AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0637700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637700 MtrunA17_Chr4g0020691 79.646 113 2 1 1 92 7 119 3.18e-59 177
Msa0637700 MtrunA17_Chr2g0284621 70.796 113 12 1 1 92 7 119 7.22e-52 159
Msa0637700 MtrunA17_Chr8g0371681 43.363 113 40 3 3 92 12 123 9.35e-22 82.4
Msa0637700 MtrunA17_Chr5g0405631 43.519 108 37 3 4 88 30 136 3.81e-21 81.3
Msa0637700 MtrunA17_Chr5g0406281 33.333 108 50 2 6 92 75 181 9.35e-15 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637700 AT2G21045.1 54.464 112 29 2 2 92 39 149 1.68e-35 119
Msa0637700 AT2G17850.1 43.750 112 39 3 4 92 32 142 5.28e-21 81.6
Msa0637700 AT5G66170.3 37.719 114 47 3 2 92 12 124 6.78e-21 80.9
Msa0637700 AT5G66170.2 37.931 116 46 4 2 92 12 126 1.91e-19 77.0
Msa0637700 AT5G66040.1 36.111 108 47 2 6 92 10 116 4.92e-15 65.5
Msa0637700 AT2G17850.3 33.793 145 40 4 3 92 31 174 2.03e-14 65.5
Msa0637700 AT4G35770.1 34.737 95 41 1 16 89 81 175 1.22e-12 60.5
Msa0637700 AT2G17850.2 57.692 52 19 2 4 53 32 82 4.32e-12 58.2

Find 26 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATAGACTTACTGAATTA+TGG 0.234240 4_3:+30032295 None:intergenic
TTCTTCTGTGCTGAACAAAT+AGG 0.302365 4_3:+30032808 None:intergenic
CAAATTCAGGCTTGTAATGC+TGG 0.378391 4_3:-30032348 Msa0637700:intron
CAGCACAGAAGAAGGGAATA+TGG 0.403977 4_3:-30032798 Msa0637700:intron
AGATGAATCTAGCAGATCTT+TGG 0.407928 4_3:+30033002 None:intergenic
TCTTCTGTGCTGAACAAATA+GGG 0.408466 4_3:+30032809 None:intergenic
GGGAGGCTACTCTGCGTGGG+TGG 0.422325 4_3:-30031049 Msa0637700:CDS
TTTGGTAGCATGGACATCTA+AGG 0.431769 4_3:+30033020 None:intergenic
GAGGAAGATCAAGTCGAGCC+TGG 0.438094 4_3:-30032326 Msa0637700:CDS
TACTCTGCGTGGGTGGATGC+TGG 0.443842 4_3:-30031042 Msa0637700:CDS
TATTTGTTCAGCACAGAAGA+AGG 0.471464 4_3:-30032806 Msa0637700:CDS
AAAGATCTGCTAGATTCATC+TGG 0.488656 4_3:-30033000 Msa0637700:CDS
ATTTAAACATATTGTTAACA+TGG 0.515720 4_3:-30031073 Msa0637700:CDS
CGTTAATAGCATTCTCAACA+TGG 0.522680 4_3:+30032834 None:intergenic
CTAGCAGATCTTTGGTAGCA+TGG 0.528750 4_3:+30033010 None:intergenic
TTTAAACATATTGTTAACAT+GGG 0.557076 4_3:-30031072 Msa0637700:CDS
AGGAAGATCAAGTCGAGCCT+GGG 0.580327 4_3:-30032325 Msa0637700:CDS
ATTTGTTCAGCACAGAAGAA+GGG 0.581761 4_3:-30032805 Msa0637700:CDS
TGAATTATGGAGATCAACCC+AGG 0.586135 4_3:+30032308 None:intergenic
AAACATATTGTTAACATGGG+GGG 0.595696 4_3:-30031069 Msa0637700:CDS
TTAAACATATTGTTAACATG+GGG 0.636631 4_3:-30031071 Msa0637700:CDS
TAAACATATTGTTAACATGG+GGG 0.658767 4_3:-30031070 Msa0637700:CDS
ATTCAGGCTTGTAATGCTGG+AGG 0.667532 4_3:-30032345 Msa0637700:intron
GTTACAACTATCTTGATGTG+AGG 0.681211 4_3:-30032978 Msa0637700:intron
CCACTGAAATAGGACTGTGG+AGG 0.719443 4_3:-30032870 Msa0637700:intron
TGTCCACTGAAATAGGACTG+TGG 0.721242 4_3:-30032873 Msa0637700:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTTACCAAAAAATT+AGG - chr4_3:30031842-30031861 Msa0637700:intron 10.0%
!!! TTTTTTAAATTATTTTTTGG+TGG + chr4_3:30032049-30032068 None:intergenic 10.0%
!!! ATTTATTTTTTGTAGTAAAA+TGG - chr4_3:30032185-30032204 Msa0637700:intron 10.0%
!!! TTTTTTTTTCAAATGATTAA+GGG + chr4_3:30032309-30032328 None:intergenic 10.0%
!!! TTTTTTTTTTCAAATGATTA+AGG + chr4_3:30032310-30032329 None:intergenic 10.0%
!! CAAAAATAAATAAAAATAGT+AGG - chr4_3:30032456-30032475 Msa0637700:intron 10.0%
!! AGTAATTAATTATTACTAAT+GGG + chr4_3:30032500-30032519 None:intergenic 10.0%
!! AAGTAATTAATTATTACTAA+TGG + chr4_3:30032501-30032520 None:intergenic 10.0%
!!! ATTGTTTTTTTATATTAAAG+AGG - chr4_3:30032869-30032888 Msa0637700:intron 10.0%
!! TATTAATTTACCAAAAAATT+AGG - chr4_3:30031842-30031861 Msa0637700:intron 10.0%
!!! TTTTTTAAATTATTTTTTGG+TGG + chr4_3:30032049-30032068 None:intergenic 10.0%
!!! ATTTATTTTTTGTAGTAAAA+TGG - chr4_3:30032185-30032204 Msa0637700:intron 10.0%
!!! TTTTTTTTTCAAATGATTAA+GGG + chr4_3:30032309-30032328 None:intergenic 10.0%
!!! TTTTTTTTTTCAAATGATTA+AGG + chr4_3:30032310-30032329 None:intergenic 10.0%
!! CAAAAATAAATAAAAATAGT+AGG - chr4_3:30032456-30032475 Msa0637700:intron 10.0%
!! AGTAATTAATTATTACTAAT+GGG + chr4_3:30032500-30032519 None:intergenic 10.0%
!! AAGTAATTAATTATTACTAA+TGG + chr4_3:30032501-30032520 None:intergenic 10.0%
!!! ATTGTTTTTTTATATTAAAG+AGG - chr4_3:30032869-30032888 Msa0637700:intron 10.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_3:30031136-30031155 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_3:30031137-30031156 None:intergenic 15.0%
!!! TAATTGAAATCCTAATTTTT+TGG + chr4_3:30031855-30031874 None:intergenic 15.0%
!! AAGAAAAAAATTGAAACTAA+CGG + chr4_3:30031898-30031917 None:intergenic 15.0%
!!! AAGAATTATTCCTTTATTTT+AGG + chr4_3:30032389-30032408 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_3:30032940-30032959 None:intergenic 15.0%
!! ATTTAAACATATTGTTAACA+TGG - chr4_3:30033001-30033020 Msa0637700:CDS 15.0%
!! TTTAAACATATTGTTAACAT+GGG - chr4_3:30033002-30033021 Msa0637700:CDS 15.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_3:30031136-30031155 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_3:30031137-30031156 None:intergenic 15.0%
!!! TAATTGAAATCCTAATTTTT+TGG + chr4_3:30031855-30031874 None:intergenic 15.0%
!! AAGAAAAAAATTGAAACTAA+CGG + chr4_3:30031898-30031917 None:intergenic 15.0%
!!! AAGAATTATTCCTTTATTTT+AGG + chr4_3:30032389-30032408 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_3:30032940-30032959 None:intergenic 15.0%
!! ATTTAAACATATTGTTAACA+TGG - chr4_3:30033001-30033020 Msa0637700:CDS 15.0%
!! TTTAAACATATTGTTAACAT+GGG - chr4_3:30033002-30033021 Msa0637700:CDS 15.0%
!! TGTATACATAAATATCTAAC+TGG - chr4_3:30031466-30031485 Msa0637700:intron 20.0%
!!! TTATAATGGATTACAAATTC+AGG - chr4_3:30031713-30031732 Msa0637700:intron 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_3:30031808-30031827 None:intergenic 20.0%
!! AGAAAAAAATTGAAACTAAC+GGG + chr4_3:30031897-30031916 None:intergenic 20.0%
!!! TTTAAATTATTTTTTGGTGG+TGG + chr4_3:30032046-30032065 None:intergenic 20.0%
!!! GATTCTAAAAAAAAATTCTG+AGG + chr4_3:30032220-30032239 None:intergenic 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_3:30032345-30032364 Msa0637700:intron 20.0%
!!! ATTCCTTTATTTTAGGAAAA+TGG + chr4_3:30032382-30032401 None:intergenic 20.0%
!! CTTTAATATATGATATGATG+TGG - chr4_3:30032962-30032981 Msa0637700:intron 20.0%
!! TTAAACATATTGTTAACATG+GGG - chr4_3:30033003-30033022 Msa0637700:CDS 20.0%
!! TGTATACATAAATATCTAAC+TGG - chr4_3:30031466-30031485 Msa0637700:intron 20.0%
!!! TTATAATGGATTACAAATTC+AGG - chr4_3:30031713-30031732 Msa0637700:intron 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_3:30031808-30031827 None:intergenic 20.0%
!! AGAAAAAAATTGAAACTAAC+GGG + chr4_3:30031897-30031916 None:intergenic 20.0%
!!! TTTAAATTATTTTTTGGTGG+TGG + chr4_3:30032046-30032065 None:intergenic 20.0%
!!! GATTCTAAAAAAAAATTCTG+AGG + chr4_3:30032220-30032239 None:intergenic 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_3:30032345-30032364 Msa0637700:intron 20.0%
!!! ATTCCTTTATTTTAGGAAAA+TGG + chr4_3:30032382-30032401 None:intergenic 20.0%
!! CTTTAATATATGATATGATG+TGG - chr4_3:30032962-30032981 Msa0637700:intron 20.0%
!! TTAAACATATTGTTAACATG+GGG - chr4_3:30033003-30033022 Msa0637700:CDS 20.0%
!! ATTCAATTTTCTACTCCTTA+TGG - chr4_3:30031324-30031343 Msa0637700:intron 25.0%
!! TTCAATTTTCTACTCCTTAT+GGG - chr4_3:30031325-30031344 Msa0637700:intron 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_3:30031581-30031600 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_3:30031658-30031677 Msa0637700:intron 25.0%
! ACACTGATGTATGATTATAA+TGG - chr4_3:30031699-30031718 Msa0637700:intron 25.0%
! GAAAAAAATTGAAACTAACG+GGG + chr4_3:30031896-30031915 None:intergenic 25.0%
!! TCTCCATTTTCCTAAAATAA+AGG - chr4_3:30032376-30032395 Msa0637700:intron 25.0%
! GTTATTGACAAATGATTAGT+GGG + chr4_3:30032832-30032851 None:intergenic 25.0%
! AGTTATTGACAAATGATTAG+TGG + chr4_3:30032833-30032852 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_3:30032936-30032955 None:intergenic 25.0%
! TAAACATATTGTTAACATGG+GGG - chr4_3:30033004-30033023 Msa0637700:CDS 25.0%
!! ATTCAATTTTCTACTCCTTA+TGG - chr4_3:30031324-30031343 Msa0637700:intron 25.0%
!! TTCAATTTTCTACTCCTTAT+GGG - chr4_3:30031325-30031344 Msa0637700:intron 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_3:30031581-30031600 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_3:30031658-30031677 Msa0637700:intron 25.0%
! ACACTGATGTATGATTATAA+TGG - chr4_3:30031699-30031718 Msa0637700:intron 25.0%
! GAAAAAAATTGAAACTAACG+GGG + chr4_3:30031896-30031915 None:intergenic 25.0%
!! TCTCCATTTTCCTAAAATAA+AGG - chr4_3:30032376-30032395 Msa0637700:intron 25.0%
! GTTATTGACAAATGATTAGT+GGG + chr4_3:30032832-30032851 None:intergenic 25.0%
! AGTTATTGACAAATGATTAG+TGG + chr4_3:30032833-30032852 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_3:30032936-30032955 None:intergenic 25.0%
! TAAACATATTGTTAACATGG+GGG - chr4_3:30033004-30033023 Msa0637700:CDS 25.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_3:30031109-30031128 Msa0637700:intron 30.0%
! TTTCTTTTGTCCACTGAAAT+AGG - chr4_3:30031194-30031213 Msa0637700:intron 30.0%
TCTACTTGGTTAACAAAATC+TGG + chr4_3:30031567-30031586 None:intergenic 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_3:30031584-30031603 Msa0637700:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_3:30031782-30031801 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_3:30031804-30031823 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - chr4_3:30032001-30032020 Msa0637700:intron 30.0%
TGCATAATATATGCAAGGTT+CGG - chr4_3:30032006-30032025 Msa0637700:intron 30.0%
ATCTCTCCAAATGAAAGAAT+TGG - chr4_3:30032546-30032565 Msa0637700:intron 30.0%
TCATCTCCAATTCTTTCATT+TGG + chr4_3:30032555-30032574 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_3:30032625-30032644 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_3:30032702-30032721 Msa0637700:intron 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_3:30032703-30032722 Msa0637700:intron 30.0%
AGAAATTTAGGCATGCTAAA+TGG + chr4_3:30032800-30032819 None:intergenic 30.0%
AAACATATTGTTAACATGGG+GGG - chr4_3:30033005-30033024 Msa0637700:CDS 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_3:30031109-30031128 Msa0637700:intron 30.0%
! TTTCTTTTGTCCACTGAAAT+AGG - chr4_3:30031194-30031213 Msa0637700:intron 30.0%
TCTACTTGGTTAACAAAATC+TGG + chr4_3:30031567-30031586 None:intergenic 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_3:30031584-30031603 Msa0637700:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_3:30031782-30031801 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_3:30031804-30031823 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - chr4_3:30032001-30032020 Msa0637700:intron 30.0%
TGCATAATATATGCAAGGTT+CGG - chr4_3:30032006-30032025 Msa0637700:intron 30.0%
ATCTCTCCAAATGAAAGAAT+TGG - chr4_3:30032546-30032565 Msa0637700:intron 30.0%
TCATCTCCAATTCTTTCATT+TGG + chr4_3:30032555-30032574 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_3:30032625-30032644 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_3:30032702-30032721 Msa0637700:intron 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_3:30032703-30032722 Msa0637700:intron 30.0%
AGAAATTTAGGCATGCTAAA+TGG + chr4_3:30032800-30032819 None:intergenic 30.0%
AAACATATTGTTAACATGGG+GGG - chr4_3:30033005-30033024 Msa0637700:CDS 30.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_3:30031075-30031094 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_3:30031074-30031093 Msa0637700:CDS 35.0%
GTTACAACTATCTTGATGTG+AGG - chr4_3:30031096-30031115 Msa0637700:intron 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_3:30031243-30031262 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_3:30031268-30031287 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_3:30031269-30031288 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_3:30031268-30031287 Msa0637700:intron 35.0%
ATTTGTTCAGCACAGAAGAA+GGG - chr4_3:30031269-30031288 Msa0637700:intron 35.0%
TGTGCTTACAAATGATCAAC+AGG - chr4_3:30031528-30031547 Msa0637700:intron 35.0%
CTTACAAATGATCAACAGGA+CGG - chr4_3:30031532-30031551 Msa0637700:intron 35.0%
TTACAAATGATCAACAGGAC+GGG - chr4_3:30031533-30031552 Msa0637700:intron 35.0%
!!! AATTATTTTTTGGTGGTGGC+CGG + chr4_3:30032042-30032061 None:intergenic 35.0%
AATGGGACTCACTTAATGAT+AGG + chr4_3:30032483-30032502 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_3:30032680-30032699 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_3:30032693-30032712 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_3:30032932-30032951 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_3:30032933-30032952 None:intergenic 35.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_3:30031075-30031094 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_3:30031074-30031093 Msa0637700:CDS 35.0%
GTTACAACTATCTTGATGTG+AGG - chr4_3:30031096-30031115 Msa0637700:intron 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_3:30031243-30031262 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_3:30031268-30031287 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_3:30031269-30031288 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_3:30031268-30031287 Msa0637700:intron 35.0%
ATTTGTTCAGCACAGAAGAA+GGG - chr4_3:30031269-30031288 Msa0637700:intron 35.0%
TGTGCTTACAAATGATCAAC+AGG - chr4_3:30031528-30031547 Msa0637700:intron 35.0%
CTTACAAATGATCAACAGGA+CGG - chr4_3:30031532-30031551 Msa0637700:intron 35.0%
TTACAAATGATCAACAGGAC+GGG - chr4_3:30031533-30031552 Msa0637700:intron 35.0%
!!! AATTATTTTTTGGTGGTGGC+CGG + chr4_3:30032042-30032061 None:intergenic 35.0%
AATGGGACTCACTTAATGAT+AGG + chr4_3:30032483-30032502 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_3:30032680-30032699 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_3:30032693-30032712 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_3:30032932-30032951 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_3:30032933-30032952 None:intergenic 35.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_3:30031057-30031076 None:intergenic 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_3:30031599-30031618 Msa0637700:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_3:30031726-30031745 Msa0637700:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_3:30031769-30031788 None:intergenic 40.0%
!!! ATTATTTTTTGGTGGTGGCC+GGG + chr4_3:30032041-30032060 None:intergenic 40.0%
TAGCTAGCGATAAACGAGTT+AGG + chr4_3:30032590-30032609 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_3:30032708-30032727 None:intergenic 40.0%
GGGTCTCGGTTAAGAAATTT+AGG + chr4_3:30032812-30032831 None:intergenic 40.0%
! GACAAATGATTAGTGGGTCT+CGG + chr4_3:30032826-30032845 None:intergenic 40.0%
TGATGTGGTAATTAACGAGC+AGG - chr4_3:30032977-30032996 Msa0637700:intron 40.0%
GATGTGGTAATTAACGAGCA+GGG - chr4_3:30032978-30032997 Msa0637700:intron 40.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_3:30031057-30031076 None:intergenic 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_3:30031599-30031618 Msa0637700:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_3:30031726-30031745 Msa0637700:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_3:30031769-30031788 None:intergenic 40.0%
!!! ATTATTTTTTGGTGGTGGCC+GGG + chr4_3:30032041-30032060 None:intergenic 40.0%
TAGCTAGCGATAAACGAGTT+AGG + chr4_3:30032590-30032609 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_3:30032708-30032727 None:intergenic 40.0%
GGGTCTCGGTTAAGAAATTT+AGG + chr4_3:30032812-30032831 None:intergenic 40.0%
! GACAAATGATTAGTGGGTCT+CGG + chr4_3:30032826-30032845 None:intergenic 40.0%
TGATGTGGTAATTAACGAGC+AGG - chr4_3:30032977-30032996 Msa0637700:intron 40.0%
GATGTGGTAATTAACGAGCA+GGG - chr4_3:30032978-30032997 Msa0637700:intron 40.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_3:30031067-30031086 None:intergenic 45.0%
TGTCCACTGAAATAGGACTG+TGG - chr4_3:30031201-30031220 Msa0637700:intron 45.0%
CAGCACAGAAGAAGGGAATA+TGG - chr4_3:30031276-30031295 Msa0637700:intron 45.0%
TTTCTACTCCTTATGGGCAG+AGG - chr4_3:30031331-30031350 Msa0637700:intron 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_3:30031729-30031748 Msa0637700:intron 45.0%
TACCAACTGAGCTAAGCTCA+CGG + chr4_3:30031979-30031998 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG - chr4_3:30031979-30031998 Msa0637700:intron 45.0%
CTCGTTTATCGCTAGCTAAG+TGG - chr4_3:30032592-30032611 Msa0637700:intron 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_3:30032711-30032730 Msa0637700:intron 45.0%
!! GTGTACGTAATGGGTCTCAT+GGG - chr4_3:30032712-30032731 Msa0637700:intron 45.0%
! TTAAAGAGGCGTAAGACGCA+CGG - chr4_3:30032883-30032902 Msa0637700:intron 45.0%
CATATTGTTAACATGGGGGG+AGG - chr4_3:30033008-30033027 Msa0637700:CDS 45.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_3:30031067-30031086 None:intergenic 45.0%
TGTCCACTGAAATAGGACTG+TGG - chr4_3:30031201-30031220 Msa0637700:intron 45.0%
CAGCACAGAAGAAGGGAATA+TGG - chr4_3:30031276-30031295 Msa0637700:intron 45.0%
TTTCTACTCCTTATGGGCAG+AGG - chr4_3:30031331-30031350 Msa0637700:intron 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_3:30031729-30031748 Msa0637700:intron 45.0%
TACCAACTGAGCTAAGCTCA+CGG + chr4_3:30031979-30031998 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG - chr4_3:30031979-30031998 Msa0637700:intron 45.0%
CTCGTTTATCGCTAGCTAAG+TGG - chr4_3:30032592-30032611 Msa0637700:intron 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_3:30032711-30032730 Msa0637700:intron 45.0%
!! GTGTACGTAATGGGTCTCAT+GGG - chr4_3:30032712-30032731 Msa0637700:intron 45.0%
! TTAAAGAGGCGTAAGACGCA+CGG - chr4_3:30032883-30032902 Msa0637700:intron 45.0%
CATATTGTTAACATGGGGGG+AGG - chr4_3:30033008-30033027 Msa0637700:CDS 45.0%
!! AATTATCTTAATTTAAATTT+AGG - chr4_3:30031870-30031889 Msa0637700:intron 5.0%
!!! TGTTTTTTTAAATTATTTTT+TGG + chr4_3:30032052-30032071 None:intergenic 5.0%
!! AAATAAAAAAAAAAACTATT+AGG - chr4_3:30032101-30032120 Msa0637700:intron 5.0%
!!! ATTTAAAAAAAATAGATTTT+GGG + chr4_3:30032133-30032152 None:intergenic 5.0%
!!! TATTTAAAAAAAATAGATTT+TGG + chr4_3:30032134-30032153 None:intergenic 5.0%
!! AATTATCTTAATTTAAATTT+AGG - chr4_3:30031870-30031889 Msa0637700:intron 5.0%
!!! TGTTTTTTTAAATTATTTTT+TGG + chr4_3:30032052-30032071 None:intergenic 5.0%
!! AAATAAAAAAAAAAACTATT+AGG - chr4_3:30032101-30032120 Msa0637700:intron 5.0%
!!! ATTTAAAAAAAATAGATTTT+GGG + chr4_3:30032133-30032152 None:intergenic 5.0%
!!! TATTTAAAAAAAATAGATTT+TGG + chr4_3:30032134-30032153 None:intergenic 5.0%
CCTCCACAGTCCTATTTCAG+TGG + chr4_3:30031207-30031226 None:intergenic 50.0%
CCACTGAAATAGGACTGTGG+AGG - chr4_3:30031204-30031223 Msa0637700:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_3:30031749-30031768 Msa0637700:intron 50.0%
ACCAACTGAGCTAAGCTCAC+GGG + chr4_3:30031978-30031997 None:intergenic 50.0%
AAGGTTCGGAGTTCGAATCC+CGG - chr4_3:30032020-30032039 Msa0637700:intron 50.0%
CCTCCACAGTCCTATTTCAG+TGG + chr4_3:30031207-30031226 None:intergenic 50.0%
CCACTGAAATAGGACTGTGG+AGG - chr4_3:30031204-30031223 Msa0637700:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_3:30031749-30031768 Msa0637700:intron 50.0%
ACCAACTGAGCTAAGCTCAC+GGG + chr4_3:30031978-30031997 None:intergenic 50.0%
AAGGTTCGGAGTTCGAATCC+CGG - chr4_3:30032020-30032039 Msa0637700:intron 50.0%
TGTAGCTGCCTCTGCCCATA+AGG + chr4_3:30031342-30031361 None:intergenic 55.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_3:30031748-30031767 Msa0637700:intron 55.0%
CCAACTGAGCTAAGCTCACG+GGG + chr4_3:30031977-30031996 None:intergenic 55.0%
TGTAGCTGCCTCTGCCCATA+AGG + chr4_3:30031342-30031361 None:intergenic 55.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_3:30031748-30031767 Msa0637700:intron 55.0%
CCAACTGAGCTAAGCTCACG+GGG + chr4_3:30031977-30031996 None:intergenic 55.0%
CCCCGTGAGCTTAGCTCAGT+TGG - chr4_3:30031974-30031993 Msa0637700:intron 60.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_3:30033032-30033051 Msa0637700:CDS 60.0%
CCCCGTGAGCTTAGCTCAGT+TGG - chr4_3:30031974-30031993 Msa0637700:intron 60.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_3:30033032-30033051 Msa0637700:CDS 60.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_3:30033021-30033040 Msa0637700:CDS 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_3:30033022-30033041 Msa0637700:CDS 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_3:30033025-30033044 Msa0637700:CDS 70.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_3:30033021-30033040 Msa0637700:CDS 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_3:30033022-30033041 Msa0637700:CDS 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_3:30033025-30033044 Msa0637700:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 30031038 30033058 30031038 ID=Msa0637700;Name=Msa0637700
chr4_3 mRNA 30031038 30033058 30031038 ID=Msa0637700-mRNA-1;Parent=Msa0637700;Name=Msa0637700-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0.66|0.5|4|0|92
chr4_3 exon 30032979 30033058 30032979 ID=Msa0637700-mRNA-1:exon:7260;Parent=Msa0637700-mRNA-1
chr4_3 exon 30032799 30032880 30032799 ID=Msa0637700-mRNA-1:exon:7259;Parent=Msa0637700-mRNA-1
chr4_3 exon 30032308 30032361 30032308 ID=Msa0637700-mRNA-1:exon:7258;Parent=Msa0637700-mRNA-1
chr4_3 exon 30031038 30031097 30031038 ID=Msa0637700-mRNA-1:exon:7257;Parent=Msa0637700-mRNA-1
chr4_3 CDS 30032979 30033058 30032979 ID=Msa0637700-mRNA-1:cds;Parent=Msa0637700-mRNA-1
chr4_3 CDS 30032799 30032880 30032799 ID=Msa0637700-mRNA-1:cds;Parent=Msa0637700-mRNA-1
chr4_3 CDS 30032308 30032361 30032308 ID=Msa0637700-mRNA-1:cds;Parent=Msa0637700-mRNA-1
chr4_3 CDS 30031038 30031097 30031038 ID=Msa0637700-mRNA-1:cds;Parent=Msa0637700-mRNA-1
Gene Sequence

>Msa0637700

CATCAAGATGTTGTTACCTTAGATGTCCATGCTACCAAAGATCTGCTAGATTCATCTGGTTACAACTATCTTGATGTGAGGACTGTGGAGGAATTCAATAAAAGCCATGTTGAGAATGCTATTAACGTACCCTATTTGTTCAGCACAGAAGAAGGGAATATGGCTTGTAATGCTGGAGGAAGATCAAGTCGAGCCTGGGTTGATCTCCATAATTCAGGATTTAAACATATTGTTAACATGGGGGGAGGCTACTCTGCGTGGGTGGATGCTGGATTT

Protein sequence

>Msa0637700

HQDVVTLDVHATKDLLDSSGYNYLDVRTVEEFNKSHVENAINVPYLFSTEEGNMACNAGGRSSRAWVDLHNSGFKHIVNMGGGYSAWVDAGF