AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1319100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319100 MtrunA17_Chr8g0349341 89.049 347 36 1 1 345 19 365 0.0 635
Msa1319100 MtrunA17_Chr8g0349321 78.963 347 71 1 1 345 19 365 0.0 574
Msa1319100 MtrunA17_Chr8g0349331 75.652 345 54 3 1 345 19 333 0.0 525
Msa1319100 MtrunA17_Chr8g0349301 84.053 301 45 2 1 299 19 318 0.0 511
Msa1319100 MtrunA17_Chr8g0344931 58.358 341 126 5 10 344 30 360 1.29e-130 377
Msa1319100 MtrunA17_Chr8g0344941 50.882 340 158 4 13 344 37 375 1.16e-117 345
Msa1319100 MtrunA17_Chr2g0301641 50.000 334 159 4 17 343 43 375 2.81e-109 324
Msa1319100 MtrunA17_Chr1g0189931 35.484 341 196 9 17 343 32 362 6.97e-55 183
Msa1319100 MtrunA17_Chr8g0341001 33.746 323 187 11 17 323 32 343 3.48e-54 181
Msa1319100 MtrunA17_Chr3g0105401 32.308 325 195 9 17 326 28 342 3.13e-53 179
Msa1319100 MtrunA17_Chr3g0077571 32.641 337 208 5 17 344 30 356 8.01e-53 178
Msa1319100 MtrunA17_Chr7g0275011 34.311 341 200 9 17 343 34 364 8.06e-53 178
Msa1319100 MtrunA17_Chr4g0046151 35.202 321 181 10 17 318 36 348 1.55e-52 177
Msa1319100 MtrunA17_Chr7g0274991 33.051 354 206 10 8 343 23 363 5.52e-52 176
Msa1319100 MtrunA17_Chr1g0189901 34.104 346 202 10 12 343 28 361 8.75e-52 175
Msa1319100 MtrunA17_Chr5g0444401 33.626 342 201 8 17 342 28 359 1.56e-51 174
Msa1319100 MtrunA17_Chr3g0120861 33.230 322 195 9 17 326 38 351 5.55e-51 173
Msa1319100 MtrunA17_Chr7g0275021 33.430 344 205 9 14 343 31 364 1.40e-50 172
Msa1319100 MtrunA17_Chr5g0438631 33.956 321 195 7 17 326 28 342 3.51e-50 171
Msa1319100 MtrunA17_Chr1g0189891 34.593 344 190 12 17 343 29 354 1.14e-49 170
Msa1319100 MtrunA17_Chr4g0008851 33.043 345 205 9 14 342 29 363 2.15e-49 169
Msa1319100 MtrunA17_Chr2g0294301 30.702 342 214 8 17 344 35 367 3.37e-49 169
Msa1319100 MtrunA17_Chr7g0275001 32.471 348 212 8 10 343 18 356 4.76e-49 168
Msa1319100 MtrunA17_Chr2g0330781 31.045 335 204 11 17 335 31 354 1.21e-48 167
Msa1319100 MtrunA17_Chr3g0086641 33.746 323 193 9 19 329 40 353 1.69e-48 167
Msa1319100 MtrunA17_Chr5g0438621 33.636 330 198 10 10 326 22 343 6.25e-48 165
Msa1319100 MtrunA17_Chr1g0182811 33.236 343 201 11 17 342 33 364 9.86e-48 165
Msa1319100 MtrunA17_Chr3g0099231 30.321 343 214 7 17 344 28 360 1.26e-47 165
Msa1319100 MtrunA17_Chr5g0405831 32.609 322 198 8 17 326 43 357 1.59e-47 164
Msa1319100 MtrunA17_Chr4g0068441 29.446 343 219 8 17 345 35 368 1.95e-47 164
Msa1319100 MtrunA17_Chr2g0320671 30.000 320 204 8 17 324 30 341 2.74e-47 163
Msa1319100 MtrunA17_Chr1g0156901 32.698 315 193 9 17 320 50 356 3.38e-47 163
Msa1319100 MtrunA17_Chr8g0371491 31.579 323 199 9 17 326 36 349 3.44e-47 163
Msa1319100 MtrunA17_Chr3g0099161 30.904 343 211 7 17 343 92 424 7.58e-47 164
Msa1319100 MtrunA17_Chr2g0283191 33.333 321 187 9 18 318 39 352 1.46e-46 162
Msa1319100 MtrunA17_Chr4g0027521 29.940 334 215 7 1 323 15 340 1.52e-46 161
Msa1319100 MtrunA17_Chr2g0294311 30.312 353 215 10 14 344 29 372 2.01e-46 161
Msa1319100 MtrunA17_Chr5g0405821 30.154 325 205 9 17 327 43 359 2.22e-46 161
Msa1319100 MtrunA17_Chr5g0438641 31.366 322 201 9 17 326 32 345 7.60e-46 159
Msa1319100 MtrunA17_Chr6g0457921 30.882 340 210 8 19 343 31 360 8.26e-46 160
Msa1319100 MtrunA17_Chr8g0370981 30.548 383 207 10 13 342 40 416 9.29e-46 161
Msa1319100 MtrunA17_Chr1g0156891 33.851 322 189 11 8 317 38 347 1.01e-45 159
Msa1319100 MtrunA17_Chr1g0156911 32.177 317 196 9 17 322 37 345 2.49e-45 158
Msa1319100 MtrunA17_Chr7g0215961 31.831 355 209 12 2 343 16 350 3.62e-45 158
Msa1319100 MtrunA17_Chr4g0060811 29.595 321 204 7 16 323 26 337 4.55e-45 158
Msa1319100 MtrunA17_Chr3g0092131 30.189 318 200 7 19 323 25 333 1.18e-44 157
Msa1319100 MtrunA17_Chr8g0380041 31.579 323 200 8 19 329 33 346 1.24e-44 156
Msa1319100 MtrunA17_Chr1g0156921 33.232 328 194 11 8 322 37 352 1.39e-44 156
Msa1319100 MtrunA17_Chr1g0156931 32.727 330 198 11 2 320 30 346 1.96e-44 156
Msa1319100 MtrunA17_Chr3g0099151 32.945 343 203 9 17 342 87 419 2.30e-44 157
Msa1319100 MtrunA17_Chr8g0374101 30.484 351 209 12 17 344 37 375 2.98e-43 153
Msa1319100 MtrunA17_Chr5g0432101 30.058 346 214 10 1 326 11 348 4.33e-43 152
Msa1319100 MtrunA17_Chr3g0131321 31.686 344 212 8 17 345 34 369 5.89e-43 152
Msa1319100 MtrunA17_Chr3g0077581 31.287 342 207 10 18 342 37 367 8.66e-43 152
Msa1319100 MtrunA17_Chr5g0434621 29.706 340 212 10 3 328 12 338 1.55e-42 150
Msa1319100 MtrunA17_Chr2g0285061 28.488 344 226 7 1 332 16 351 1.58e-42 151
Msa1319100 MtrunA17_Chr5g0396511 29.080 337 218 9 19 342 48 376 1.75e-42 151
Msa1319100 MtrunA17_Chr4g0017431 28.358 335 212 9 17 338 31 350 3.70e-42 150
Msa1319100 MtrunA17_Chr2g0284951 33.041 342 197 12 17 345 33 355 2.94e-41 148
Msa1319100 MtrunA17_Chr3g0085231 31.287 342 194 10 17 342 31 347 5.17e-40 144
Msa1319100 MtrunA17_Chr8g0371481 29.231 325 201 10 17 324 41 353 7.54e-40 144
Msa1319100 MtrunA17_Chr7g0275291 29.532 342 206 9 17 332 33 365 8.82e-40 144
Msa1319100 MtrunA17_Chr3g0142921 30.699 329 202 11 5 317 22 340 4.58e-39 142
Msa1319100 MtrunA17_Chr1g0159971 32.164 342 193 11 17 329 47 378 4.60e-39 142
Msa1319100 MtrunA17_Chr2g0283531 30.704 355 208 14 12 342 26 366 6.07e-39 142
Msa1319100 MtrunA17_Chr5g0420811 30.267 337 213 11 13 342 29 350 6.33e-39 141
Msa1319100 MtrunA17_Chr1g0160031 31.343 335 203 9 17 329 39 368 2.17e-38 140
Msa1319100 MtrunA17_Chr8g0370951 29.226 349 214 12 17 344 31 367 3.02e-38 140
Msa1319100 MtrunA17_Chr1g0157001 28.739 341 214 11 22 342 41 372 3.65e-38 140
Msa1319100 MtrunA17_Chr8g0380031 32.615 325 188 10 17 329 84 389 4.13e-38 140
Msa1319100 MtrunA17_Chr8g0371471 29.467 319 207 9 17 324 41 352 5.16e-38 139
Msa1319100 MtrunA17_Chr5g0437421 27.554 323 209 9 17 322 32 346 6.29e-38 139
Msa1319100 MtrunA17_Chr2g0285001 30.233 344 208 11 18 345 34 361 3.31e-37 137
Msa1319100 MtrunA17_Chr1g0159981 31.212 330 198 9 17 322 46 370 5.54e-37 137
Msa1319100 MtrunA17_Chr8g0381581 30.029 343 202 10 17 329 40 374 1.21e-36 136
Msa1319100 MtrunA17_Chr3g0085881 32.754 345 188 12 18 344 34 352 1.60e-36 135
Msa1319100 MtrunA17_Chr1g0160011 31.098 328 199 9 17 322 40 362 1.72e-36 135
Msa1319100 MtrunA17_Chr3g0142941 32.308 325 195 12 8 320 42 353 2.20e-36 135
Msa1319100 MtrunA17_Chr7g0254461 29.683 347 211 9 14 332 40 381 4.39e-36 134
Msa1319100 MtrunA17_Chr7g0226931 26.146 371 223 7 12 342 33 392 2.10e-35 133
Msa1319100 MtrunA17_Chr2g0284991 30.904 343 208 12 17 345 33 360 3.20e-35 132
Msa1319100 MtrunA17_Chr4g0057991 27.492 331 219 8 18 332 40 365 3.97e-35 132
Msa1319100 MtrunA17_Chr2g0283501 28.611 360 226 12 1 339 15 364 5.66e-35 131
Msa1319100 MtrunA17_Chr1g0178931 29.618 314 195 10 18 322 38 334 7.47e-35 130
Msa1319100 MtrunA17_Chr1g0159991 30.523 344 208 10 17 336 36 372 8.52e-35 130
Msa1319100 MtrunA17_Chr2g0283481 30.857 350 210 14 17 342 47 388 3.14e-34 129
Msa1319100 MtrunA17_Chr7g0226911 27.887 355 214 9 14 338 32 374 3.82e-34 129
Msa1319100 MtrunA17_Chr8g0347751 28.324 346 200 10 25 332 37 372 5.87e-34 129
Msa1319100 MtrunA17_Chr6g0450701 28.824 340 214 8 14 332 36 368 1.32e-33 127
Msa1319100 MtrunA17_Chr8g0370961 30.085 236 154 4 111 342 14 242 1.72e-33 124
Msa1319100 MtrunA17_Chr2g0283511 30.523 344 205 12 22 342 36 368 3.49e-33 126
Msa1319100 MtrunA17_Chr7g0266061 31.661 319 183 13 18 322 43 340 4.41e-33 125
Msa1319100 MtrunA17_Chr6g0450711 29.706 340 205 9 17 332 122 451 5.29e-33 127
Msa1319100 MtrunA17_Chr2g0284921 29.769 346 206 10 17 344 34 360 1.86e-32 124
Msa1319100 MtrunA17_Chr7g0271551 30.091 329 204 11 10 324 30 346 3.62e-32 123
Msa1319100 MtrunA17_Chr2g0317261 29.395 347 206 13 12 336 25 354 3.88e-32 123
Msa1319100 MtrunA17_Chr2g0317271 29.395 347 206 13 12 336 25 354 1.07e-31 122
Msa1319100 MtrunA17_Chr1g0160101 28.743 334 202 8 17 322 42 367 1.11e-31 122
Msa1319100 MtrunA17_Chr6g0450731 29.882 338 196 12 17 332 33 351 1.12e-31 122
Msa1319100 MtrunA17_Chr3g0104821 29.661 354 211 15 11 336 40 383 1.60e-31 122
Msa1319100 MtrunA17_Chr7g0273101 29.834 362 210 15 2 332 16 364 1.82e-31 122
Msa1319100 MtrunA17_Chr2g0284941 30.117 342 189 13 18 345 34 339 2.33e-31 121
Msa1319100 MtrunA17_Chr0c01g0489581 29.107 347 207 13 12 336 25 354 5.14e-31 120
Msa1319100 MtrunA17_Chr7g0226941 28.402 338 212 7 17 329 33 365 8.14e-31 120
Msa1319100 MtrunA17_Chr1g0198351 29.073 313 193 9 16 318 42 335 9.48e-31 119
Msa1319100 MtrunA17_Chr0c01g0489571 29.107 347 207 13 12 336 25 354 1.40e-30 119
Msa1319100 MtrunA17_Chr6g0450721 30.030 333 196 10 17 330 33 347 2.61e-30 118
Msa1319100 MtrunA17_Chr3g0112821 28.448 348 218 11 12 342 25 358 1.09e-29 117
Msa1319100 MtrunA17_Chr8g0352901 28.863 343 209 10 17 332 28 362 2.29e-29 116
Msa1319100 MtrunA17_Chr1g0191461 29.360 344 210 10 17 334 31 367 2.66e-29 115
Msa1319100 MtrunA17_Chr1g0178941 29.102 323 193 13 18 322 41 345 3.83e-29 115
Msa1319100 MtrunA17_Chr1g0198381 28.963 328 205 10 16 333 1 310 5.54e-29 114
Msa1319100 MtrunA17_Chr2g0301581 29.042 334 195 11 17 329 34 346 4.85e-28 112
Msa1319100 MtrunA17_Chr4g0027571 30.516 213 135 5 117 322 3 209 8.47e-28 108
Msa1319100 MtrunA17_Chr3g0093031 28.329 353 217 13 12 342 25 363 1.65e-27 110
Msa1319100 MtrunA17_Chr1g0198391 27.168 346 197 11 16 328 32 355 2.28e-27 110
Msa1319100 MtrunA17_Chr3g0112691 29.240 342 208 13 12 330 25 355 2.32e-27 110
Msa1319100 MtrunA17_Chr3g0096551 28.814 354 208 13 12 330 24 368 3.04e-27 110
Msa1319100 MtrunA17_Chr2g0301541 28.443 334 197 11 17 329 34 346 2.19e-26 107
Msa1319100 MtrunA17_Chr6g0455661 26.400 250 165 6 103 342 229 469 6.50e-23 99.4
Msa1319100 MtrunA17_Chr6g0455661 50.000 96 46 1 17 112 31 124 4.36e-19 88.2
Msa1319100 MtrunA17_Chr6g0459921 26.639 244 160 7 109 342 124 358 9.63e-22 94.7
Msa1319100 MtrunA17_Chr8g0339251 28.028 289 182 8 17 291 28 304 7.02e-21 92.0
Msa1319100 MtrunA17_Chr7g0229581 30.921 152 98 3 183 333 8 153 3.17e-20 86.3
Msa1319100 MtrunA17_Chr2g0283541 26.453 344 163 12 12 342 26 292 6.74e-20 88.6
Msa1319100 MtrunA17_Chr7g0229591 37.931 145 81 5 17 155 30 171 2.46e-19 85.1
Msa1319100 MtrunA17_Chr2g0301591 28.077 260 168 6 17 267 34 283 2.99e-18 83.6
Msa1319100 MtrunA17_Chr4g0018571 28.767 146 99 2 177 322 25 165 3.20e-18 81.3
Msa1319100 MtrunA17_Chr6g0469521 30.882 136 89 2 173 308 22 152 4.21e-16 74.7
Msa1319100 MtrunA17_Chr5g0440501 21.277 235 164 5 106 328 7 232 5.58e-16 76.6
Msa1319100 MtrunA17_Chr1g0198401 23.897 272 181 9 70 329 8 265 9.08e-16 76.3
Msa1319100 MtrunA17_Chr1g0189921 42.276 123 60 5 17 131 31 150 1.13e-15 73.6
Msa1319100 MtrunA17_Chr3g0104801 39.062 128 64 6 11 128 40 163 2.68e-15 73.2
Msa1319100 MtrunA17_Chr1g0189911 28.788 132 89 1 212 343 18 144 6.09e-14 68.6
Msa1319100 MtrunA17_Chr2g0321991 41.837 98 51 4 12 105 28 123 1.98e-13 66.6
Msa1319100 MtrunA17_Chr4g0027561 45.556 90 41 5 17 101 30 116 2.88e-13 66.6
Msa1319100 MtrunA17_Chr2g0301551 24.296 284 177 10 67 329 36 302 3.39e-13 69.3
Msa1319100 MtrunA17_Chr2g0301571 25.352 284 174 11 67 329 36 302 7.22e-13 68.6
Msa1319100 MtrunA17_Chr1g0178961 23.529 187 135 4 137 318 18 201 7.58e-13 67.0
Msa1319100 MtrunA17_Chr8g0370971 43.269 104 49 4 13 108 34 135 9.28e-13 65.9
Msa1319100 MtrunA17_Chr7g0228261 36.047 86 50 1 258 343 10 90 1.09e-12 63.5
Msa1319100 MtrunA17_Chr6g0469511 38.261 115 64 4 17 126 30 142 1.57e-12 64.3
Msa1319100 MtrunA17_Chr2g0284931 24.096 249 142 9 109 344 5 219 7.78e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319100 AT1G53920.1 51.775 338 153 5 16 344 47 383 2.48e-120 352
Msa1319100 AT5G40990.1 51.852 351 159 5 3 344 23 372 2.30e-116 342
Msa1319100 AT1G53940.2 49.271 343 164 5 11 344 33 374 2.92e-109 324
Msa1319100 AT3G14225.2 46.512 344 172 6 11 344 31 372 5.28e-103 308
Msa1319100 AT3G14225.1 46.264 348 171 7 11 344 31 376 5.50e-102 305
Msa1319100 AT1G53990.1 46.439 351 171 6 3 344 21 363 1.81e-98 296
Msa1319100 AT1G53940.1 49.627 268 126 4 11 270 33 299 1.92e-78 243
Msa1319100 AT5G15720.1 35.882 340 196 8 17 342 30 361 2.57e-59 195
Msa1319100 AT5G45960.1 37.975 316 172 10 17 316 47 354 3.12e-57 190
Msa1319100 AT1G71120.1 31.657 338 206 9 17 342 31 355 4.52e-56 187
Msa1319100 AT5G45950.1 33.438 317 187 10 17 322 40 343 1.04e-52 178
Msa1319100 AT3G04290.1 33.628 339 201 8 17 341 29 357 3.03e-52 177
Msa1319100 AT1G54030.1 31.420 331 200 9 18 343 53 361 7.43e-52 177
Msa1319100 AT5G41890.1 33.333 348 200 12 19 342 33 372 1.72e-51 175
Msa1319100 AT2G04570.1 34.688 320 189 9 17 324 28 339 2.87e-51 174
Msa1319100 AT4G26790.1 35.404 322 182 10 17 323 29 339 5.80e-51 173
Msa1319100 AT4G26790.2 35.404 322 182 10 17 323 29 339 5.80e-51 173
Msa1319100 AT5G33370.1 32.059 340 209 7 17 343 30 360 3.58e-50 171
Msa1319100 AT5G18430.1 33.623 345 201 10 14 341 25 358 4.46e-50 171
Msa1319100 AT4G28780.1 33.138 341 204 10 17 343 31 361 2.38e-49 169
Msa1319100 AT1G06990.1 32.308 325 189 10 17 323 37 348 1.33e-48 167
Msa1319100 AT2G40250.1 32.407 324 197 9 17 325 36 352 1.97e-48 167
Msa1319100 AT3G16370.1 32.047 337 198 12 17 335 30 353 2.51e-48 166
Msa1319100 AT1G71691.2 31.845 336 209 6 17 342 55 380 8.12e-48 166
Msa1319100 AT5G03820.1 31.579 323 197 11 17 324 33 346 2.62e-46 161
Msa1319100 AT3G50400.1 31.429 350 212 12 13 342 30 371 2.67e-46 161
Msa1319100 AT1G20120.1 32.915 319 196 9 17 324 78 389 4.11e-46 162
Msa1319100 AT4G18970.1 31.454 337 210 8 19 342 30 358 5.46e-46 160
Msa1319100 AT5G03820.2 31.579 323 197 11 17 324 61 374 9.44e-46 160
Msa1319100 AT1G20132.1 30.435 322 206 9 17 327 61 375 1.44e-45 160
Msa1319100 AT4G10950.2 28.947 342 222 9 17 345 71 404 1.80e-45 160
Msa1319100 AT4G18970.2 31.454 337 210 8 19 342 30 358 2.10e-45 160
Msa1319100 AT2G23540.1 30.725 345 212 10 17 342 48 384 2.33e-45 159
Msa1319100 AT1G75890.2 31.447 318 201 9 17 323 47 358 3.40e-45 158
Msa1319100 AT2G42990.1 31.307 329 206 9 17 333 28 348 3.52e-45 158
Msa1319100 AT3G14820.1 33.542 319 190 11 17 324 32 339 4.27e-45 158
Msa1319100 AT1G75890.3 31.447 318 201 9 17 323 76 387 7.18e-45 158
Msa1319100 AT5G45670.1 31.157 337 211 8 19 342 31 359 9.39e-45 157
Msa1319100 AT5G15720.2 37.218 266 150 7 17 268 30 292 1.53e-44 155
Msa1319100 AT5G03810.1 28.840 319 210 6 17 324 30 342 6.76e-44 155
Msa1319100 AT2G19010.1 30.362 359 210 12 2 345 15 348 8.27e-44 154
Msa1319100 AT1G59406.1 31.962 316 196 10 17 322 30 336 9.70e-44 154
Msa1319100 AT1G59030.1 31.962 316 196 10 17 322 30 336 9.70e-44 154
Msa1319100 AT1G58725.1 31.962 316 196 10 17 322 30 336 9.70e-44 154
Msa1319100 AT1G29660.1 31.193 327 202 9 19 332 34 350 1.29e-43 154
Msa1319100 AT1G75890.1 30.211 331 201 9 17 323 47 371 2.32e-43 154
Msa1319100 AT2G19010.2 30.362 359 210 12 2 345 45 378 2.89e-43 154
Msa1319100 AT1G29670.1 31.098 328 202 9 18 332 33 349 4.26e-43 153
Msa1319100 AT3G14220.1 31.642 335 202 13 18 342 33 350 5.20e-43 152
Msa1319100 AT5G08460.1 30.702 342 213 8 17 342 49 382 5.82e-43 153
Msa1319100 AT1G20130.2 31.118 331 197 11 17 326 184 504 7.07e-43 155
Msa1319100 AT4G10950.1 28.655 342 219 10 17 345 71 400 7.51e-43 153
Msa1319100 AT5G22810.1 30.769 325 198 12 17 324 34 348 7.87e-43 152
Msa1319100 AT5G37690.1 29.102 323 203 9 19 327 29 339 8.44e-43 152
Msa1319100 AT3G53100.1 29.688 320 203 9 17 323 29 339 1.24e-42 151
Msa1319100 AT1G20130.1 31.118 331 197 11 17 326 204 524 1.42e-42 155
Msa1319100 AT5G42170.1 30.341 323 206 10 8 322 45 356 1.69e-42 151
Msa1319100 AT1G29670.2 31.875 320 194 9 18 324 101 409 1.79e-42 153
Msa1319100 AT1G58430.1 30.794 315 196 7 17 317 35 341 2.09e-42 151
Msa1319100 AT1G58520.3 31.975 319 185 10 17 322 30 329 2.80e-42 150
Msa1319100 AT1G58525.1 31.975 319 185 10 17 322 30 329 2.80e-42 150
Msa1319100 AT2G30220.1 30.769 325 201 8 17 326 33 348 4.93e-42 150
Msa1319100 AT2G24560.1 30.183 328 199 10 17 326 34 349 6.69e-41 147
Msa1319100 AT5G15720.3 31.597 288 178 6 69 342 48 330 1.71e-40 145
Msa1319100 AT1G75900.1 28.783 337 221 9 2 326 26 355 1.77e-40 146
Msa1319100 AT2G30310.1 29.814 322 208 7 17 326 34 349 2.15e-40 145
Msa1319100 AT1G75880.1 30.503 318 202 8 17 322 52 362 3.19e-40 145
Msa1319100 AT1G28600.1 30.769 351 193 14 17 337 31 361 4.91e-40 145
Msa1319100 AT2G27360.1 32.194 351 205 14 17 342 33 375 8.85e-40 145
Msa1319100 AT1G75880.2 30.284 317 203 8 17 322 52 361 1.07e-39 144
Msa1319100 AT1G20135.1 30.312 320 187 10 17 322 29 326 1.25e-39 143
Msa1319100 AT5G63170.1 32.177 317 177 12 17 318 28 321 1.30e-39 143
Msa1319100 AT2G19060.1 30.861 337 199 12 19 342 32 347 1.42e-39 143
Msa1319100 AT1G74460.1 28.395 324 210 7 16 326 22 336 1.68e-39 143
Msa1319100 AT3G14210.1 30.029 343 205 13 15 342 34 356 3.96e-39 143
Msa1319100 AT5G55050.1 30.321 343 212 11 18 342 40 373 8.19e-39 142
Msa1319100 AT1G54000.1 30.383 339 205 13 16 342 35 354 8.71e-39 142
Msa1319100 AT1G71250.1 27.515 338 225 6 17 342 41 370 2.18e-38 140
Msa1319100 AT2G19050.1 30.088 339 197 13 19 342 33 346 2.30e-38 140
Msa1319100 AT4G01130.1 29.825 342 209 8 17 332 34 370 2.79e-38 140
Msa1319100 AT5G37690.2 27.950 322 200 9 19 327 29 331 3.35e-38 139
Msa1319100 AT1G54010.1 29.290 338 210 11 16 342 35 354 3.67e-38 140
Msa1319100 AT1G54020.2 28.060 335 215 11 16 343 32 347 7.99e-38 139
Msa1319100 AT2G31540.1 29.321 324 207 7 17 326 35 350 1.49e-37 138
Msa1319100 AT1G28580.1 29.598 348 208 12 13 333 33 370 3.22e-37 138
Msa1319100 AT1G28650.1 29.970 337 213 9 13 329 33 366 3.62e-37 137
Msa1319100 AT1G33811.1 29.462 353 222 11 9 342 23 367 9.73e-37 136
Msa1319100 AT1G75920.2 31.790 324 185 11 17 324 29 332 2.22e-36 134
Msa1319100 AT1G28590.1 29.972 357 210 14 17 345 36 380 3.49e-36 135
Msa1319100 AT1G28570.1 28.814 354 218 13 17 345 34 378 4.39e-36 135
Msa1319100 AT4G30140.1 28.529 333 208 8 19 342 35 346 6.24e-36 133
Msa1319100 AT1G28640.1 30.117 342 198 12 17 329 35 364 6.63e-36 134
Msa1319100 AT1G75910.1 29.814 322 195 10 17 324 28 332 1.15e-35 132
Msa1319100 AT3G48460.1 27.988 343 222 11 5 329 28 363 1.50e-35 133
Msa1319100 AT1G28610.2 29.661 354 203 13 17 342 31 366 2.29e-35 132
Msa1319100 AT1G31550.2 30.028 353 208 13 17 342 36 376 3.78e-35 132
Msa1319100 AT3G43550.1 31.868 273 163 9 8 268 25 286 4.33e-35 130
Msa1319100 AT5G14450.1 28.655 342 206 9 17 329 41 373 1.42e-34 130
Msa1319100 AT1G23500.1 32.110 327 190 11 17 331 35 341 1.44e-34 130
Msa1319100 AT2G03980.2 30.154 325 198 13 17 328 43 351 1.52e-34 130
Msa1319100 AT2G03980.3 30.154 325 198 13 17 328 43 351 1.52e-34 130
Msa1319100 AT2G03980.1 30.154 325 198 13 17 328 43 351 1.52e-34 130
Msa1319100 AT2G03980.4 30.154 325 198 13 17 328 43 351 1.52e-34 130
Msa1319100 AT1G54030.2 33.058 242 142 7 18 254 53 279 1.68e-34 129
Msa1319100 AT1G73610.1 30.530 321 186 11 17 323 35 332 1.00e-33 127
Msa1319100 AT3G43570.1 27.532 316 181 8 17 322 30 307 2.05e-33 126
Msa1319100 AT5G03610.1 30.031 323 198 10 12 322 38 344 2.49e-33 127
Msa1319100 AT3G26430.1 29.446 343 204 8 17 329 31 365 2.85e-33 127
Msa1319100 AT1G71691.3 32.443 262 162 5 17 268 55 311 3.85e-33 125
Msa1319100 AT1G75920.1 30.357 336 189 11 17 324 24 342 5.57e-33 125
Msa1319100 AT1G54790.3 30.028 363 210 14 1 332 18 367 9.80e-33 125
Msa1319100 AT1G31550.1 29.545 352 208 14 17 342 36 373 1.96e-32 125
Msa1319100 AT1G28660.1 28.824 340 213 9 13 329 31 364 3.23e-32 124
Msa1319100 AT3G05180.1 28.297 364 221 12 2 335 21 374 7.58e-32 123
Msa1319100 AT1G71691.1 26.667 285 191 5 68 342 3 279 1.94e-31 120
Msa1319100 AT1G75930.1 30.218 321 194 11 17 324 29 332 2.09e-31 121
Msa1319100 AT1G28670.1 29.341 334 212 9 17 329 35 365 2.16e-31 122
Msa1319100 AT2G19050.2 31.984 247 147 7 19 254 33 269 2.22e-31 120
Msa1319100 AT5G33370.2 29.818 275 175 7 8 268 20 290 2.50e-31 120
Msa1319100 AT5G45910.1 32.277 347 195 12 14 329 27 364 3.02e-31 121
Msa1319100 AT1G28660.2 29.118 340 211 10 13 329 31 363 3.08e-31 121
Msa1319100 AT1G67830.1 29.129 333 204 10 17 322 30 357 3.82e-31 121
Msa1319100 AT1G56670.1 28.235 340 218 11 4 328 29 357 5.56e-30 118
Msa1319100 AT3G09930.2 29.217 332 200 11 18 333 40 352 7.29e-30 117
Msa1319100 AT3G09930.1 29.217 332 200 11 18 333 40 352 7.29e-30 117
Msa1319100 AT1G09390.1 28.339 307 190 10 46 332 62 358 8.12e-30 117
Msa1319100 AT1G75920.4 29.934 304 179 10 37 324 19 304 7.89e-29 114
Msa1319100 AT1G75920.3 28.616 318 172 10 17 324 29 301 2.20e-28 112
Msa1319100 AT2G24560.2 28.938 273 169 9 17 271 34 299 2.05e-27 110
Msa1319100 AT5G03600.1 29.907 321 193 10 12 322 9 307 2.63e-27 109
Msa1319100 AT5G03600.2 29.907 321 193 10 12 322 44 342 4.23e-27 110
Msa1319100 AT1G54790.1 28.986 345 200 14 24 332 31 366 8.29e-27 109
Msa1319100 AT3G62280.1 30.272 294 179 9 46 322 61 345 9.31e-27 109
Msa1319100 AT4G01130.2 29.259 270 168 5 17 268 34 298 2.53e-26 107
Msa1319100 AT4G16230.1 32.857 210 123 8 9 203 21 227 6.19e-25 102
Msa1319100 AT2G04020.2 35.714 210 123 7 17 216 43 250 1.05e-24 102
Msa1319100 AT2G04020.1 36.181 199 117 6 17 207 43 239 1.09e-24 101
Msa1319100 AT3G27950.1 27.434 339 219 8 17 336 32 362 1.93e-24 102
Msa1319100 AT4G01130.3 26.761 284 182 7 75 332 1 284 3.55e-24 100
Msa1319100 AT1G53970.2 60.526 76 30 0 11 86 14 89 5.06e-24 94.7
Msa1319100 AT1G53970.1 60.526 76 30 0 11 86 14 89 5.06e-24 94.7
Msa1319100 AT2G31550.1 25.592 211 141 3 119 322 4 205 4.84e-22 93.2
Msa1319100 AT1G28600.2 34.783 184 90 7 17 180 31 204 5.16e-22 93.2
Msa1319100 AT2G36325.1 28.750 320 192 15 18 322 48 346 6.02e-22 95.5
Msa1319100 AT1G54790.2 27.493 371 198 16 24 332 31 392 1.04e-21 95.5
Msa1319100 AT1G56670.2 27.899 276 181 9 4 268 29 297 3.81e-21 92.4
Msa1319100 AT1G54020.1 23.897 272 184 8 78 343 7 261 1.37e-20 90.5
Msa1319100 AT1G54020.5 23.897 272 184 8 78 343 7 261 1.37e-20 90.5
Msa1319100 AT1G54020.3 23.897 272 184 8 78 343 7 261 1.37e-20 90.5
Msa1319100 AT3G62280.2 33.036 224 132 7 46 256 61 279 3.11e-20 89.7
Msa1319100 AT1G54020.4 25.359 209 144 5 141 343 10 212 4.39e-20 88.2
Msa1319100 AT1G28580.2 26.117 291 181 10 68 333 8 289 5.09e-20 89.4
Msa1319100 AT3G14210.2 24.896 241 158 8 112 342 1 228 1.41e-16 79.0
Msa1319100 AT4G16233.1 31.496 127 81 2 217 342 6 127 1.76e-16 75.5
Msa1319100 AT1G28610.1 33.696 184 92 8 17 180 31 204 1.39e-15 75.9
Msa1319100 AT1G28570.3 26.540 211 133 8 150 345 12 215 1.52e-15 75.5
Msa1319100 AT5G03980.1 26.190 252 161 10 93 326 66 310 3.69e-15 75.9
Msa1319100 AT1G28570.2 26.540 211 133 8 150 345 103 306 5.61e-15 75.1
Msa1319100 AT4G16220.1 45.455 99 47 5 9 103 21 116 4.28e-12 65.9

Find 68 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCCACTCCACATAAAT+TGG 0.117994 8_4:-21320460 None:intergenic
GAGATTGGAGGGAGGAAATT+TGG 0.128940 8_4:+21319465 Msa1319100:CDS
ATAAGGAACCCTTCCAAATT+TGG 0.194977 8_4:+21319693 Msa1319100:CDS
AATAGATATGGTTGAATTAA+TGG 0.240239 8_4:-21318363 None:intergenic
ATGTCGTAACCTACCAAATT+TGG 0.250255 8_4:-21319706 None:intergenic
CATGTTGCGTTGTTTGTATT+TGG 0.276431 8_4:+21317936 Msa1319100:CDS
CAATACTACTGCTGATTATC+TGG 0.284780 8_4:+21317995 Msa1319100:CDS
AGATTGGAGGGAGGAAATTT+GGG 0.288893 8_4:+21319466 Msa1319100:CDS
ACCATCAAGGCATTTGTAAA+TGG 0.295353 8_4:+21319522 Msa1319100:CDS
TCCATTTACAAATGCCTTGA+TGG 0.302148 8_4:-21319523 None:intergenic
GGAGATTCATTATTTGATAT+CGG 0.321455 8_4:+21317957 Msa1319100:CDS
AAAGTATTGAGGCAGAAATT+AGG 0.330525 8_4:+21318944 Msa1319100:CDS
ATTCAACCATATCTATTTCC+TGG 0.336634 8_4:+21318369 Msa1319100:CDS
AACAACGCAACATGTTCTTT+TGG 0.354884 8_4:-21317927 None:intergenic
ATCTATTTATTGAAGTCATA+AGG 0.388340 8_4:+21319676 Msa1319100:CDS
GTTGATTAAGTAAACAGCTT+TGG 0.391709 8_4:-21318993 None:intergenic
TTTCAGGGAATACATGAGAT+TGG 0.392735 8_4:+21319450 Msa1319100:intron
TTGAAGAAGGTTTCACCATA+TGG 0.403375 8_4:-21318029 None:intergenic
ATATTCTTACCTATGAAATC+TGG 0.406113 8_4:-21318089 None:intergenic
CTGTGGTAGTGGACCTTACA+AGG 0.416741 8_4:+21320319 Msa1319100:CDS
ATTTCCACTCCACATAAATT+GGG 0.417782 8_4:-21320459 None:intergenic
CGTGTCATTCCAGATTTCAT+AGG 0.463040 8_4:+21318080 Msa1319100:CDS
GGATTATTTCCCAATTTATG+TGG 0.464274 8_4:+21320450 Msa1319100:CDS
TTTACAAATGCCTTGATGGT+TGG 0.467592 8_4:-21319519 None:intergenic
GCCATTCATCCTACTGAAAG+TGG 0.478067 8_4:+21320422 Msa1319100:CDS
ACCTTCTTCAAGTATCCATC+TGG 0.479315 8_4:+21318041 Msa1319100:CDS
GCTGTTTACTTAATCAACAT+TGG 0.479448 8_4:+21318998 Msa1319100:CDS
TGAGAACCAGGAAATAGATA+TGG 0.483185 8_4:-21318375 None:intergenic
GGAGTAGCATGCTGTGGTAG+TGG 0.486878 8_4:+21320308 Msa1319100:CDS
CAACTGTAATATCCCTTGTA+AGG 0.490108 8_4:-21320332 None:intergenic
TGATGAAAAGGTTTGAAAGA+AGG 0.492946 8_4:+21320284 Msa1319100:intron
CTGGCAAATTACCCACCATA+TGG 0.493318 8_4:+21318014 Msa1319100:CDS
ATCCTACTGAAAGTGGTAGT+AGG 0.503174 8_4:+21320429 Msa1319100:CDS
GGTTCTCAACTATATATCAA+TGG 0.507572 8_4:+21318390 Msa1319100:CDS
TGAAGAAACCACAACTCTGC+TGG 0.512505 8_4:+21318970 Msa1319100:CDS
ATTTCCCAATTTATGTGGAG+TGG 0.520045 8_4:+21320455 Msa1319100:CDS
ACCACTTTCAGTAGGATGAA+TGG 0.524662 8_4:-21320423 None:intergenic
AGCTTTGGCCAGCAGAGTTG+TGG 0.539024 8_4:-21318978 None:intergenic
ATTCTTAACACACCATCACT+TGG 0.539789 8_4:+21319489 Msa1319100:CDS
TACAAGGGATATTACAGTTG+TGG 0.540378 8_4:+21320335 Msa1319100:CDS
CAGGGAATACATGAGATTGG+AGG 0.540491 8_4:+21319453 Msa1319100:intron
ACCAGATGGATACTTGAAGA+AGG 0.545031 8_4:-21318042 None:intergenic
GTTTACTTAATCAACATTGG+AGG 0.549518 8_4:+21319001 Msa1319100:CDS
TGAAAAGGTTTGAAAGAAGG+AGG 0.555812 8_4:+21320287 Msa1319100:intron
CGTAACCTACCAAATTTGGA+AGG 0.560332 8_4:-21319702 None:intergenic
AGGGAATACATGAGATTGGA+GGG 0.573956 8_4:+21319454 Msa1319100:intron
AAACATATGTTACCAAGTGT+TGG 0.574366 8_4:-21317903 None:intergenic
GGAATGCTAATTCCAACACT+TGG 0.575060 8_4:+21317891 None:intergenic
AAGAAGGTTTCACCATATGG+TGG 0.576872 8_4:-21318026 None:intergenic
AGTAGAAACTCATCAAGGAC+TGG 0.581951 8_4:+21318446 Msa1319100:CDS
TCAAAGAACAAATATTCAGA+AGG 0.585115 8_4:-21320398 None:intergenic
TTGATATATAGTTGAGAACC+AGG 0.593545 8_4:-21318387 None:intergenic
AGTGGAAATAAGAGTATCAC+CGG 0.594030 8_4:+21320473 Msa1319100:CDS
TAGTTTAGTGTTGTGCACTT+TGG 0.595776 8_4:-21319586 None:intergenic
AAATACGTATCAATGGTTGT+TGG 0.595900 8_4:+21319067 Msa1319100:CDS
CCATCAGAAAATCTACCAGA+TGG 0.603978 8_4:-21318056 None:intergenic
AGAAGGTTTCACCATATGGT+GGG 0.608192 8_4:-21318025 None:intergenic
AAGGGATATTACAGTTGTGG+AGG 0.618906 8_4:+21320338 Msa1319100:CDS
AGAATGTCAAGAAAGTATTG+AGG 0.633947 8_4:+21318933 Msa1319100:CDS
GAAGGAGGAGTAGCATGCTG+TGG 0.634403 8_4:+21320302 Msa1319100:CDS
AATTTAACGAAACAGATCAA+AGG 0.635768 8_4:+21319624 Msa1319100:CDS
ATCCTACTACCACTTTCAGT+AGG 0.638183 8_4:-21320431 None:intergenic
GTAACCTACCAAATTTGGAA+GGG 0.642469 8_4:-21319701 None:intergenic
GTAAGAGATTATGACTTGTG+TGG 0.643556 8_4:+21320371 Msa1319100:CDS
GCTTTAGTAGAAACTCATCA+AGG 0.663302 8_4:+21318441 Msa1319100:CDS
GTTGGAAAACAACCAAGTGA+TGG 0.678111 8_4:-21319501 None:intergenic
TGTGGTAGTGGACCTTACAA+GGG 0.691944 8_4:+21320320 Msa1319100:CDS
GAATACATGAGATTGGAGGG+AGG 0.702913 8_4:+21319457 Msa1319100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTGTTTTGATAAATTATTA+TGG - chr8_4:21318180-21318199 None:intergenic 15.0%
!! TTACGATAAAAGTTAAAATT+AGG - chr8_4:21318276-21318295 None:intergenic 15.0%
!!! TTAATTTTTTAGCTTAATTG+CGG + chr8_4:21318514-21318533 Msa1319100:intron 15.0%
!!! GATATTAGTTTTCAATATAA+TGG + chr8_4:21320181-21320200 Msa1319100:intron 15.0%
!!! TTATCTAATTCTAAAATTTG+TGG + chr8_4:21320251-21320270 Msa1319100:intron 15.0%
!!! TTTTATTTTCATCACTCAAA+CGG - chr8_4:21318133-21318152 None:intergenic 20.0%
!! AATAGATATGGTTGAATTAA+TGG - chr8_4:21318366-21318385 None:intergenic 20.0%
!!! TTTACTTGTCTAGATTTTTT+TGG + chr8_4:21318552-21318571 Msa1319100:intron 20.0%
!!! ATTTTTGGTTTTAGAAATCT+TGG - chr8_4:21318585-21318604 None:intergenic 20.0%
!!! AAATGTTACTTCATCATTTT+TGG - chr8_4:21318600-21318619 None:intergenic 20.0%
!!! TGATGAAGTAACATTTTTTT+TGG + chr8_4:21318604-21318623 Msa1319100:intron 20.0%
!! TATAGTATTTCAATACAATC+TGG - chr8_4:21318671-21318690 None:intergenic 20.0%
!! GTCAAAAAAAAAAAATTGAG+AGG - chr8_4:21318702-21318721 None:intergenic 20.0%
!! TTGACATGTCAATAAAAAAT+TGG + chr8_4:21318717-21318736 Msa1319100:intron 20.0%
!! GAAAATATATAAACACCATA+TGG - chr8_4:21318877-21318896 None:intergenic 20.0%
!!! TATGGTGTTTATATATTTTC+AGG + chr8_4:21318877-21318896 Msa1319100:intron 20.0%
!!! TTTGGATTGACTTATTTAAA+CGG + chr8_4:21319180-21319199 Msa1319100:intron 20.0%
!! ATTAAAAATAAGTAGATACG+AGG - chr8_4:21319264-21319283 None:intergenic 20.0%
!! TACATAAACACTTGTATAAT+AGG + chr8_4:21319336-21319355 Msa1319100:intron 20.0%
!! ATTAGAATAGTAGAAGATTT+AGG - chr8_4:21319398-21319417 None:intergenic 20.0%
!!! TCATTCCAATATTTAATTTC+AGG + chr8_4:21319434-21319453 Msa1319100:intron 20.0%
!!! CATTCCAATATTTAATTTCA+GGG + chr8_4:21319435-21319454 Msa1319100:intron 20.0%
!! TATTCCCTGAAATTAAATAT+TGG - chr8_4:21319442-21319461 None:intergenic 20.0%
!! ATCTATTTATTGAAGTCATA+AGG + chr8_4:21319676-21319695 Msa1319100:CDS 20.0%
!! ATATTCGACAAAATTATTGA+AGG - chr8_4:21319778-21319797 None:intergenic 20.0%
!!! TTTGAAGTCATTGATTTAAT+TGG - chr8_4:21319867-21319886 None:intergenic 20.0%
!! TGTTATGGTGTAAAAATATA+CGG - chr8_4:21320021-21320040 None:intergenic 20.0%
!! TTGATACATTAAATGTGTTA+TGG - chr8_4:21320036-21320055 None:intergenic 20.0%
!! AATTTCACAATACAAATTTG+CGG - chr8_4:21320088-21320107 None:intergenic 20.0%
!! TTAGAATATAACCTATTTGA+TGG - chr8_4:21320117-21320136 None:intergenic 20.0%
! GGAGATTCATTATTTGATAT+CGG + chr8_4:21317957-21317976 Msa1319100:CDS 25.0%
! ATATTCTTACCTATGAAATC+TGG - chr8_4:21318092-21318111 None:intergenic 25.0%
!! CCAATTTTTGCTTACATTTT+GGG - chr8_4:21318225-21318244 None:intergenic 25.0%
!! ACCAATTTTTGCTTACATTT+TGG - chr8_4:21318226-21318245 None:intergenic 25.0%
! ATCATGATCAGATTGTTAAT+TGG - chr8_4:21318313-21318332 None:intergenic 25.0%
!!! TGAAGTAACATTTTTTTTGG+CGG + chr8_4:21318607-21318626 Msa1319100:intron 25.0%
! TGTCAAATAACTAAACAACT+CGG - chr8_4:21318770-21318789 None:intergenic 25.0%
! TCATGAAAAATACGTATCAA+TGG + chr8_4:21319060-21319079 Msa1319100:CDS 25.0%
! ACTACGATATTAGAAAATAC+AGG - chr8_4:21319136-21319155 None:intergenic 25.0%
!! TTCTAATATCGTAGTTCTTT+TGG + chr8_4:21319141-21319160 Msa1319100:intron 25.0%
! GGTTATGATTAAAACATGTT+TGG + chr8_4:21319162-21319181 Msa1319100:intron 25.0%
! AATTTAACGAAACAGATCAA+AGG + chr8_4:21319624-21319643 Msa1319100:CDS 25.0%
! TAATGTATCAACCTAAACAT+TGG + chr8_4:21320045-21320064 Msa1319100:intron 25.0%
! AATGTATCAACCTAAACATT+GGG + chr8_4:21320046-21320065 Msa1319100:intron 25.0%
! ATTTCACAATACAAATTTGC+GGG - chr8_4:21320087-21320106 None:intergenic 25.0%
!! AAATTGACTTACCATCAAAT+AGG + chr8_4:21320103-21320122 Msa1319100:intron 25.0%
! TCAAAGAACAAATATTCAGA+AGG - chr8_4:21320401-21320420 None:intergenic 25.0%
AAACATATGTTACCAAGTGT+TGG - chr8_4:21317906-21317925 None:intergenic 30.0%
!! TTTTTGCTTACATTTTGGGA+CGG - chr8_4:21318221-21318240 None:intergenic 30.0%
CCCAAAATGTAAGCAAAAAT+TGG + chr8_4:21318222-21318241 Msa1319100:intron 30.0%
ATTCAACCATATCTATTTCC+TGG + chr8_4:21318369-21318388 Msa1319100:CDS 30.0%
TTGATATATAGTTGAGAACC+AGG - chr8_4:21318390-21318409 None:intergenic 30.0%
GGTTCTCAACTATATATCAA+TGG + chr8_4:21318390-21318409 Msa1319100:CDS 30.0%
! AACTAAACAACTCGGATTTT+TGG - chr8_4:21318762-21318781 None:intergenic 30.0%
ATAAGAGAGATTTGACCATA+TGG + chr8_4:21318859-21318878 Msa1319100:intron 30.0%
!! AGAATGTCAAGAAAGTATTG+AGG + chr8_4:21318933-21318952 Msa1319100:CDS 30.0%
!! AAAGTATTGAGGCAGAAATT+AGG + chr8_4:21318944-21318963 Msa1319100:CDS 30.0%
GTTGATTAAGTAAACAGCTT+TGG - chr8_4:21318996-21319015 None:intergenic 30.0%
GCTGTTTACTTAATCAACAT+TGG + chr8_4:21318998-21319017 Msa1319100:CDS 30.0%
GTTTACTTAATCAACATTGG+AGG + chr8_4:21319001-21319020 Msa1319100:CDS 30.0%
AAATACGTATCAATGGTTGT+TGG + chr8_4:21319067-21319086 Msa1319100:CDS 30.0%
GACTTATTTAAACGGTTGTT+AGG + chr8_4:21319188-21319207 Msa1319100:intron 30.0%
!! GGCTTAATTTGATGATGAAA+AGG + chr8_4:21320272-21320291 Msa1319100:intron 30.0%
TGATGAAAAGGTTTGAAAGA+AGG + chr8_4:21320284-21320303 Msa1319100:intron 30.0%
GGATTATTTCCCAATTTATG+TGG + chr8_4:21320450-21320469 Msa1319100:CDS 30.0%
ATTTCCACTCCACATAAATT+GGG - chr8_4:21320462-21320481 None:intergenic 30.0%
TATTTCCACTCCACATAAAT+TGG - chr8_4:21320463-21320482 None:intergenic 30.0%
!!! ACAGAGTTTTGAGATTGTAA+GGG - chr8_4:21320499-21320518 None:intergenic 30.0%
!!! AACAGAGTTTTGAGATTGTA+AGG - chr8_4:21320500-21320519 None:intergenic 30.0%
! AACAACGCAACATGTTCTTT+TGG - chr8_4:21317930-21317949 None:intergenic 35.0%
CATGTTGCGTTGTTTGTATT+TGG + chr8_4:21317936-21317955 Msa1319100:CDS 35.0%
! CAATACTACTGCTGATTATC+TGG + chr8_4:21317995-21318014 Msa1319100:CDS 35.0%
TTGAAGAAGGTTTCACCATA+TGG - chr8_4:21318032-21318051 None:intergenic 35.0%
TGAGAACCAGGAAATAGATA+TGG - chr8_4:21318378-21318397 None:intergenic 35.0%
GCTTTAGTAGAAACTCATCA+AGG + chr8_4:21318441-21318460 Msa1319100:CDS 35.0%
TCTAGACAAGTAAAAACACG+AGG - chr8_4:21318546-21318565 None:intergenic 35.0%
CTCAAAACTAGCTGATAAAG+AGG - chr8_4:21318633-21318652 None:intergenic 35.0%
!!! CTCTTTATCAGCTAGTTTTG+AGG + chr8_4:21318631-21318650 Msa1319100:intron 35.0%
TTTCAGGGAATACATGAGAT+TGG + chr8_4:21319450-21319469 Msa1319100:intron 35.0%
ATTCTTAACACACCATCACT+TGG + chr8_4:21319489-21319508 Msa1319100:CDS 35.0%
! TTTACAAATGCCTTGATGGT+TGG - chr8_4:21319522-21319541 None:intergenic 35.0%
! ACCATCAAGGCATTTGTAAA+TGG + chr8_4:21319522-21319541 Msa1319100:CDS 35.0%
TCCATTTACAAATGCCTTGA+TGG - chr8_4:21319526-21319545 None:intergenic 35.0%
TAGTTTAGTGTTGTGCACTT+TGG - chr8_4:21319589-21319608 None:intergenic 35.0%
ATAAGGAACCCTTCCAAATT+TGG + chr8_4:21319693-21319712 Msa1319100:CDS 35.0%
GTAACCTACCAAATTTGGAA+GGG - chr8_4:21319704-21319723 None:intergenic 35.0%
ATGTCGTAACCTACCAAATT+TGG - chr8_4:21319709-21319728 None:intergenic 35.0%
GAAGGAATAACCCAATGTTT+AGG - chr8_4:21320059-21320078 None:intergenic 35.0%
TGAAAAGGTTTGAAAGAAGG+AGG + chr8_4:21320287-21320306 Msa1319100:intron 35.0%
CAACTGTAATATCCCTTGTA+AGG - chr8_4:21320335-21320354 None:intergenic 35.0%
TACAAGGGATATTACAGTTG+TGG + chr8_4:21320335-21320354 Msa1319100:CDS 35.0%
! GTAAGAGATTATGACTTGTG+TGG + chr8_4:21320371-21320390 Msa1319100:CDS 35.0%
ATTTCCCAATTTATGTGGAG+TGG + chr8_4:21320455-21320474 Msa1319100:CDS 35.0%
!! AGTGGAAATAAGAGTATCAC+CGG + chr8_4:21320473-21320492 Msa1319100:CDS 35.0%
AGAAGGTTTCACCATATGGT+GGG - chr8_4:21318028-21318047 None:intergenic 40.0%
AAGAAGGTTTCACCATATGG+TGG - chr8_4:21318029-21318048 None:intergenic 40.0%
ACCTTCTTCAAGTATCCATC+TGG + chr8_4:21318041-21318060 Msa1319100:CDS 40.0%
ACCAGATGGATACTTGAAGA+AGG - chr8_4:21318045-21318064 None:intergenic 40.0%
CCATCAGAAAATCTACCAGA+TGG - chr8_4:21318059-21318078 None:intergenic 40.0%
! CCATCTGGTAGATTTTCTGA+TGG + chr8_4:21318056-21318075 Msa1319100:CDS 40.0%
! CGTGTCATTCCAGATTTCAT+AGG + chr8_4:21318080-21318099 Msa1319100:CDS 40.0%
AGTAGAAACTCATCAAGGAC+TGG + chr8_4:21318446-21318465 Msa1319100:CDS 40.0%
TACAATCTGGTATTGCAACC+AGG - chr8_4:21318658-21318677 None:intergenic 40.0%
AGGGAATACATGAGATTGGA+GGG + chr8_4:21319454-21319473 Msa1319100:intron 40.0%
AGATTGGAGGGAGGAAATTT+GGG + chr8_4:21319466-21319485 Msa1319100:CDS 40.0%
GTTGGAAAACAACCAAGTGA+TGG - chr8_4:21319504-21319523 None:intergenic 40.0%
!! TGGTTGTTTTCCAACCATCA+AGG + chr8_4:21319509-21319528 Msa1319100:CDS 40.0%
CGTAACCTACCAAATTTGGA+AGG - chr8_4:21319705-21319724 None:intergenic 40.0%
CAATACAAATTTGCGGGTCA+CGG - chr8_4:21320081-21320100 None:intergenic 40.0%
AAGGGATATTACAGTTGTGG+AGG + chr8_4:21320338-21320357 Msa1319100:CDS 40.0%
ACCACTTTCAGTAGGATGAA+TGG - chr8_4:21320426-21320445 None:intergenic 40.0%
ATCCTACTGAAAGTGGTAGT+AGG + chr8_4:21320429-21320448 Msa1319100:CDS 40.0%
ATCCTACTACCACTTTCAGT+AGG - chr8_4:21320434-21320453 None:intergenic 40.0%
!!! AGTTTTGAGATTGTAAGGGC+CGG - chr8_4:21320495-21320514 None:intergenic 40.0%
CTGGCAAATTACCCACCATA+TGG + chr8_4:21318014-21318033 Msa1319100:CDS 45.0%
!!! TGCTTACATTTTGGGACGGA+GGG - chr8_4:21318217-21318236 None:intergenic 45.0%
!!! TTGCTTACATTTTGGGACGG+AGG - chr8_4:21318218-21318237 None:intergenic 45.0%
! GGAGTCAATTTTGCATCAGC+TGG + chr8_4:21318411-21318430 Msa1319100:CDS 45.0%
! AATTTTGCATCAGCTGGAGC+TGG + chr8_4:21318417-21318436 Msa1319100:CDS 45.0%
! ATTTTGCATCAGCTGGAGCT+GGG + chr8_4:21318418-21318437 Msa1319100:CDS 45.0%
!!! ATCAGCTAGTTTTGAGGTCC+TGG + chr8_4:21318637-21318656 Msa1319100:intron 45.0%
TGAAGAAACCACAACTCTGC+TGG + chr8_4:21318970-21318989 Msa1319100:CDS 45.0%
CAGGGAATACATGAGATTGG+AGG + chr8_4:21319453-21319472 Msa1319100:intron 45.0%
GAATACATGAGATTGGAGGG+AGG + chr8_4:21319457-21319476 Msa1319100:CDS 45.0%
GAGATTGGAGGGAGGAAATT+TGG + chr8_4:21319465-21319484 Msa1319100:CDS 45.0%
GGAACCCTTCCAAATTTGGT+AGG + chr8_4:21319697-21319716 Msa1319100:intron 45.0%
!! TGTGGTAGTGGACCTTACAA+GGG + chr8_4:21320320-21320339 Msa1319100:CDS 45.0%
GCCATTCATCCTACTGAAAG+TGG + chr8_4:21320422-21320441 Msa1319100:CDS 45.0%
! TTTTGCATCAGCTGGAGCTG+GGG + chr8_4:21318419-21318438 Msa1319100:CDS 50.0%
ACAAATTTGCGGGTCACGGA+AGG - chr8_4:21320077-21320096 None:intergenic 50.0%
!! CTGTGGTAGTGGACCTTACA+AGG + chr8_4:21320319-21320338 Msa1319100:CDS 50.0%
! AGCTTTGGCCAGCAGAGTTG+TGG - chr8_4:21318981-21319000 None:intergenic 55.0%
GAAGGAGGAGTAGCATGCTG+TGG + chr8_4:21320302-21320321 Msa1319100:CDS 55.0%
GGAGTAGCATGCTGTGGTAG+TGG + chr8_4:21320308-21320327 Msa1319100:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 21317894 21320529 21317894 ID=Msa1319100;Name=Msa1319100
chr8_4 mRNA 21317894 21320529 21317894 ID=Msa1319100-mRNA-1;Parent=Msa1319100;Name=Msa1319100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|345
chr8_4 exon 21317894 21318101 21317894 ID=Msa1319100-mRNA-1:exon:7741;Parent=Msa1319100-mRNA-1
chr8_4 exon 21318346 21318467 21318346 ID=Msa1319100-mRNA-1:exon:7742;Parent=Msa1319100-mRNA-1
chr8_4 exon 21318899 21319111 21318899 ID=Msa1319100-mRNA-1:exon:7743;Parent=Msa1319100-mRNA-1
chr8_4 exon 21319456 21319714 21319456 ID=Msa1319100-mRNA-1:exon:7744;Parent=Msa1319100-mRNA-1
chr8_4 exon 21320294 21320529 21320294 ID=Msa1319100-mRNA-1:exon:7745;Parent=Msa1319100-mRNA-1
chr8_4 CDS 21317894 21318101 21317894 ID=Msa1319100-mRNA-1:cds;Parent=Msa1319100-mRNA-1
chr8_4 CDS 21318346 21318467 21318346 ID=Msa1319100-mRNA-1:cds;Parent=Msa1319100-mRNA-1
chr8_4 CDS 21318899 21319111 21318899 ID=Msa1319100-mRNA-1:cds;Parent=Msa1319100-mRNA-1
chr8_4 CDS 21319456 21319714 21319456 ID=Msa1319100-mRNA-1:cds;Parent=Msa1319100-mRNA-1
chr8_4 CDS 21320294 21320529 21320294 ID=Msa1319100-mRNA-1:cds;Parent=Msa1319100-mRNA-1
Gene Sequence

>Msa1319100

ATGCTAATTCCAACACTTGGTAACATATGTTTGCCAAAAGAACATGTTGCGTTGTTTGTATTTGGAGATTCATTATTTGATATCGGAAACAATAATTATATCAATACTACTGCTGATTATCTGGCAAATTACCCACCATATGGTGAAACCTTCTTCAAGTATCCATCTGGTAGATTTTCTGATGGACGTGTCATTCCAGATTTCATAGCTGAGTATGCTAAGTTACCATTAATTCAACCATATCTATTTCCTGGTTCTCAACTATATATCAATGGAGTCAATTTTGCATCAGCTGGAGCTGGGGCTTTAGTAGAAACTCATCAAGGACTGGTGATAGATCTAAAGACACAATTGAGTTATCTGAAGAATGTCAAGAAAGTATTGAGGCAGAAATTAGGAGATGAAGAAACCACAACTCTGCTGGCCAAAGCTGTTTACTTAATCAACATTGGAGGCAATGATTATTTTGTAGAAAATTCGAGCTTATACACTCATGAAAAATACGTATCAATGGTTGTTGGTAATCTTACAACTGTGATCAAAGGAATACATGAGATTGGAGGGAGGAAATTTGGGATTCTTAACACACCATCACTTGGTTGTTTTCCAACCATCAAGGCATTTGTAAATGGAACTAAATCAAGTTCTTGCATTGAAGAGTATTCAACACTTGCCAAAGTGCACAACACTAAACTATCAGTGAAACTTCAGAATTTAACGAAACAGATCAAAGGATTTAAATATTCTTATTTTGATTTCTTTGATCTATTTATTGAAGTCATAAGGAACCCTTCCAAATTTGGTTTGAAAGAAGGAGGAGTAGCATGCTGTGGTAGTGGACCTTACAAGGGATATTACAGTTGTGGAGGTAAAAGAGAAGTAAGAGATTATGACTTGTGTGGTAATCCTTCTGAATATTTGTTCTTTGATGCCATTCATCCTACTGAAAGTGGTAGTAGGATTATTTCCCAATTTATGTGGAGTGGAAATAAGAGTATCACCGGCCCTTACAATCTCAAAACTCTGTTTGAAGAATAA
Protein sequence

>Msa1319100

MLIPTLGNICLPKEHVALFVFGDSLFDIGNNNYINTTADYLANYPPYGETFFKYPSGRFSDGRVIPDFIAEYAKLPLIQPYLFPGSQLYINGVNFASAGAGALVETHQGLVIDLKTQLSYLKNVKKVLRQKLGDEETTTLLAKAVYLINIGGNDYFVENSSLYTHEKYVSMVVGNLTTVIKGIHEIGGRKFGILNTPSLGCFPTIKAFVNGTKSSSCIEEYSTLAKVHNTKLSVKLQNLTKQIKGFKYSYFDFFDLFIEVIRNPSKFGLKEGGVACCGSGPYKGYYSCGGKREVRDYDLCGNPSEYLFFDAIHPTESGSRIISQFMWSGNKSITGPYNLKTLFEE*