AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1308170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308170 MtrunA17_Chr8g0334751 90.685 365 27 3 1 364 1 359 0.0 613
Msa1308170 MtrunA17_Chr8g0334761 76.986 365 81 1 3 364 2 366 0.0 575
Msa1308170 MtrunA17_Chr2g0310441 74.324 370 82 3 3 360 2 370 0.0 530
Msa1308170 MtrunA17_Chr8g0334771 72.386 373 87 4 3 360 2 373 2.69e-178 499
Msa1308170 MtrunA17_Chr4g0073241 49.041 365 178 4 1 363 1 359 2.08e-122 357
Msa1308170 MtrunA17_Chr8g0334711 72.464 207 54 3 4 209 3 207 1.53e-93 278
Msa1308170 MtrunA17_Chr8g0334721 81.429 140 26 0 222 361 1 140 5.69e-80 242
Msa1308170 MtrunA17_Chr8g0354121 38.235 340 201 5 6 340 11 346 1.17e-75 239
Msa1308170 MtrunA17_Chr8g0334731 61.538 208 58 4 1 206 1 188 8.43e-75 230
Msa1308170 MtrunA17_Chr1g0155761 35.294 374 218 3 14 364 24 396 5.67e-72 229
Msa1308170 MtrunA17_Chr6g0483401 38.348 339 199 4 20 352 19 353 1.59e-71 227
Msa1308170 MtrunA17_Chr3g0142131 36.119 371 210 5 16 363 25 391 6.45e-71 226
Msa1308170 MtrunA17_Chr3g0081421 37.135 342 207 5 7 343 13 351 7.35e-71 226
Msa1308170 MtrunA17_Chr7g0255561 38.390 323 194 3 12 330 15 336 2.92e-69 222
Msa1308170 MtrunA17_Chr7g0255581 38.390 323 194 3 12 330 15 336 2.92e-69 222
Msa1308170 MtrunA17_Chr6g0463971 36.527 334 207 2 7 337 12 343 3.58e-69 221
Msa1308170 MtrunA17_Chr3g0081511 37.309 327 200 4 12 335 18 342 9.23e-69 221
Msa1308170 MtrunA17_Chr2g0278541 32.964 361 230 4 12 363 13 370 1.51e-66 215
Msa1308170 MtrunA17_Chr2g0284261 32.948 346 229 2 8 353 5 347 7.82e-65 210
Msa1308170 MtrunA17_Chr1g0164831 34.393 346 213 6 12 355 4 337 6.34e-63 204
Msa1308170 MtrunA17_Chr1g0160171 35.088 342 216 3 12 353 17 352 8.72e-63 205
Msa1308170 MtrunA17_Chr2g0278561 33.141 347 221 4 12 352 16 357 1.02e-62 205
Msa1308170 MtrunA17_Chr7g0271561 32.831 332 215 2 11 335 7 337 2.73e-62 204
Msa1308170 MtrunA17_Chr1g0186611 35.143 350 211 7 10 354 15 353 1.19e-61 201
Msa1308170 MtrunA17_Chr1g0182291 34.706 340 218 4 12 350 16 352 2.37e-61 201
Msa1308170 MtrunA17_Chr3g0114691 33.434 332 212 3 12 338 21 348 6.23e-61 201
Msa1308170 MtrunA17_Chr2g0278551 33.144 353 229 3 12 362 13 360 1.02e-60 200
Msa1308170 MtrunA17_Chr1g0186601 34.627 335 214 4 5 337 10 341 2.68e-60 197
Msa1308170 MtrunA17_Chr2g0290611 33.058 363 224 6 7 363 8 357 1.63e-59 196
Msa1308170 MtrunA17_Chr1g0160181 38.806 335 184 7 6 330 16 339 2.26e-59 196
Msa1308170 MtrunA17_Chr7g0263101 33.799 358 228 6 6 356 8 363 9.81e-59 194
Msa1308170 MtrunA17_Chr4g0059311 34.568 324 204 3 11 330 11 330 1.26e-58 193
Msa1308170 MtrunA17_Chr1g0186561 36.556 331 206 4 10 338 15 343 1.63e-58 193
Msa1308170 MtrunA17_Chr3g0129571 32.857 350 229 3 12 356 8 356 1.92e-58 193
Msa1308170 MtrunA17_Chr1g0186641 35.736 333 203 7 10 337 12 338 3.46e-58 192
Msa1308170 MtrunA17_Chr1g0186571 36.103 349 208 9 12 352 14 355 5.79e-57 189
Msa1308170 MtrunA17_Chr1g0171301 32.853 347 225 6 10 352 15 357 1.03e-56 189
Msa1308170 MtrunA17_Chr8g0383731 34.493 345 218 4 12 349 6 349 4.89e-56 186
Msa1308170 MtrunA17_Chr2g0332001 33.140 344 225 4 15 356 42 382 1.04e-55 187
Msa1308170 MtrunA17_Chr3g0129601 32.951 349 213 5 12 356 30 361 1.52e-54 183
Msa1308170 MtrunA17_Chr3g0114731 31.124 347 235 3 12 357 19 362 2.53e-53 181
Msa1308170 MtrunA17_Chr3g0114701 35.398 339 213 5 12 346 10 346 5.14e-53 180
Msa1308170 MtrunA17_Chr3g0126101 31.686 344 227 4 11 350 6 345 7.46e-53 178
Msa1308170 MtrunA17_Chr3g0129591 33.333 324 211 2 12 330 6 329 6.46e-52 176
Msa1308170 MtrunA17_Chr1g0184221 31.476 359 218 7 8 348 13 361 2.10e-51 175
Msa1308170 MtrunA17_Chr4g0050881 31.214 346 226 4 12 351 10 349 5.15e-51 174
Msa1308170 MtrunA17_Chr1g0160111 28.367 349 235 3 20 362 16 355 7.65e-49 168
Msa1308170 MtrunA17_Chr4g0050941 30.595 353 237 3 12 357 13 364 1.44e-48 168
Msa1308170 MtrunA17_Chr4g0051021 30.114 352 243 2 7 356 10 360 1.54e-48 168
Msa1308170 MtrunA17_Chr4g0050891 30.938 320 213 3 12 325 14 331 1.73e-47 164
Msa1308170 MtrunA17_Chr8g0334741 56.604 159 25 4 222 364 1 131 4.10e-47 156
Msa1308170 MtrunA17_Chr5g0413961 32.733 333 216 4 1 330 1 328 8.70e-47 162
Msa1308170 MtrunA17_Chr3g0114711 28.198 383 230 6 12 354 15 392 4.69e-46 162
Msa1308170 MtrunA17_Chr3g0129581 33.538 325 209 3 12 330 6 329 5.19e-46 160
Msa1308170 MtrunA17_Chr7g0227921 33.134 335 210 5 31 355 31 361 1.99e-45 159
Msa1308170 MtrunA17_Chr5g0408031 31.832 333 206 5 16 330 15 344 5.61e-44 155
Msa1308170 MtrunA17_Chr5g0407991 29.539 369 235 7 16 364 14 377 2.45e-42 151
Msa1308170 MtrunA17_Chr5g0441761 29.167 336 226 5 16 346 19 347 6.36e-42 149
Msa1308170 MtrunA17_Chr5g0408041 29.067 375 239 6 1 353 4 373 2.73e-41 149
Msa1308170 MtrunA17_Chr5g0428881 27.596 366 244 3 13 358 20 384 5.80e-41 148
Msa1308170 MtrunA17_Chr5g0413921 28.615 325 231 1 16 340 12 335 2.25e-40 145
Msa1308170 MtrunA17_Chr5g0407971 30.539 334 211 6 14 330 14 343 3.14e-39 143
Msa1308170 MtrunA17_Chr5g0413951 28.707 317 206 4 23 330 20 325 3.80e-39 142
Msa1308170 MtrunA17_Chr5g0408001 29.121 364 231 7 16 364 15 366 2.69e-38 140
Msa1308170 MtrunA17_Chr5g0413941 26.708 322 235 1 16 337 12 332 3.70e-38 139
Msa1308170 MtrunA17_Chr6g0451201 33.660 306 191 4 31 333 32 328 6.26e-38 139
Msa1308170 MtrunA17_Chr5g0413931 26.006 323 238 1 15 337 10 331 8.38e-37 136
Msa1308170 MtrunA17_Chr1g0177221 36.015 261 146 6 8 258 15 264 1.37e-36 133
Msa1308170 MtrunA17_Chr3g0126091 26.536 358 245 5 11 362 11 356 1.40e-36 135
Msa1308170 MtrunA17_Chr4g0051001 30.844 308 205 4 6 308 26 330 1.56e-36 135
Msa1308170 MtrunA17_Chr5g0404811 28.926 242 168 2 127 364 8 249 4.57e-36 131
Msa1308170 MtrunA17_Chr1g0150151 28.529 333 234 3 1 330 1 332 1.35e-35 133
Msa1308170 MtrunA17_Chr6g0451261 31.802 283 188 2 31 311 31 310 1.49e-35 137
Msa1308170 MtrunA17_Chr5g0429001 26.852 324 208 3 61 356 1 323 1.41e-34 129
Msa1308170 MtrunA17_Chr4g0050931 28.116 345 194 5 12 347 13 312 1.46e-34 129
Msa1308170 MtrunA17_Chr3g0084091 29.562 274 187 2 87 359 5 273 1.49e-34 129
Msa1308170 MtrunA17_Chr6g0451171 30.061 326 220 3 10 333 11 330 4.79e-34 129
Msa1308170 MtrunA17_Chr5g0399281 28.000 350 226 7 19 359 16 348 1.20e-33 127
Msa1308170 MtrunA17_Chr8g0369841 27.151 372 250 7 4 360 2 367 1.28e-33 128
Msa1308170 MtrunA17_Chr6g0451211 31.498 327 215 5 11 333 12 333 1.44e-33 127
Msa1308170 MtrunA17_Chr2g0278021 33.475 236 145 4 126 352 1 233 9.95e-32 120
Msa1308170 MtrunA17_Chr6g0451251 31.858 339 207 6 31 353 32 362 4.47e-30 118
Msa1308170 MtrunA17_Chr4g0056081 27.300 337 220 11 19 337 22 351 7.10e-30 117
Msa1308170 MtrunA17_Chr1g0211801 29.032 248 172 2 12 258 12 256 1.08e-29 115
Msa1308170 MtrunA17_Chr6g0451191 29.808 208 143 1 126 333 1 205 5.69e-25 101
Msa1308170 MtrunA17_Chr1g0211811 39.130 92 53 1 260 351 1 89 3.32e-18 78.6
Msa1308170 MtrunA17_Chr1g0177231 41.333 75 44 0 256 330 26 100 5.31e-15 71.2
Msa1308170 MtrunA17_Chr2g0278031 34.188 117 70 2 12 125 15 127 1.14e-14 70.1
Msa1308170 MtrunA17_Chr1g0172891 43.284 67 38 0 264 330 12 78 2.01e-13 66.2
Msa1308170 MtrunA17_Chr4g0050921 31.683 101 69 0 211 311 4 104 2.31e-13 66.6
Msa1308170 MtrunA17_Chr5g0404801 37.168 113 66 2 14 124 10 119 3.95e-13 65.9
Msa1308170 MtrunA17_Chr4g0050911 30.233 129 81 1 88 207 7 135 1.04e-12 65.5
Msa1308170 MtrunA17_Chr1g0182261 32.800 125 77 3 211 330 88 210 6.04e-12 64.7
Msa1308170 MtrunA17_Chr1g0172881 31.690 142 72 4 126 258 24 149 1.44e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308170 AT4G30420.2 50.135 371 172 5 6 364 3 372 1.15e-126 369
Msa1308170 AT4G30420.1 50.413 363 167 5 14 364 1 362 6.01e-124 362
Msa1308170 AT4G28040.1 42.899 345 178 6 5 346 1 329 1.74e-91 278
Msa1308170 AT4G28040.5 42.899 345 178 6 5 346 1 329 1.74e-91 278
Msa1308170 AT4G28040.3 42.899 345 178 6 5 346 1 329 1.74e-91 278
Msa1308170 AT4G28040.4 42.899 345 178 6 5 346 1 329 1.74e-91 278
Msa1308170 AT4G28040.2 42.899 345 178 6 5 346 1 329 1.74e-91 278
Msa1308170 AT1G75500.1 37.931 348 203 5 14 353 22 364 8.92e-71 226
Msa1308170 AT1G75500.2 37.931 348 203 5 14 353 22 364 8.92e-71 226
Msa1308170 AT4G08300.1 37.391 345 204 5 1 338 1 340 2.40e-69 222
Msa1308170 AT1G21890.1 36.193 373 216 5 1 363 1 361 1.52e-67 218
Msa1308170 AT1G44800.1 36.735 343 214 3 1 342 1 341 7.41e-66 213
Msa1308170 AT3G18200.2 34.036 332 212 3 1 330 24 350 5.08e-65 211
Msa1308170 AT3G53210.1 35.393 356 215 4 14 360 12 361 4.85e-64 208
Msa1308170 AT5G07050.1 35.613 351 210 6 12 349 18 365 1.10e-62 206
Msa1308170 AT5G64700.1 34.734 357 223 3 5 352 1 356 6.60e-61 200
Msa1308170 AT2G40900.1 35.077 325 204 3 4 327 2 320 1.39e-60 200
Msa1308170 AT1G09380.1 35.202 321 203 3 11 327 7 326 2.19e-60 199
Msa1308170 AT3G56620.1 34.769 325 206 3 4 327 2 321 6.65e-59 195
Msa1308170 AT2G39510.1 34.650 329 209 6 5 330 1 326 1.30e-58 194
Msa1308170 AT2G37460.1 34.731 334 196 9 7 330 10 331 2.91e-57 191
Msa1308170 AT1G43650.1 33.134 335 218 3 14 346 9 339 2.91e-56 187
Msa1308170 AT3G53210.2 36.396 283 166 3 87 360 27 304 2.14e-55 184
Msa1308170 AT5G13670.1 31.250 368 233 7 5 363 1 357 9.42e-55 184
Msa1308170 AT1G21890.2 36.909 317 189 3 1 308 1 315 2.87e-54 182
Msa1308170 AT1G11450.3 32.945 343 220 5 12 350 16 352 5.43e-53 179
Msa1308170 AT3G30340.1 30.841 321 211 3 36 355 35 345 1.35e-51 176
Msa1308170 AT4G01440.1 30.816 331 228 1 10 340 8 337 2.30e-51 175
Msa1308170 AT4G08290.1 32.551 341 215 6 7 337 8 343 3.75e-51 175
Msa1308170 AT1G11450.5 33.660 306 199 4 46 350 6 308 1.11e-50 172
Msa1308170 AT1G11460.1 33.127 323 210 3 12 331 16 335 6.86e-50 171
Msa1308170 AT3G28050.1 33.989 356 209 10 11 357 11 349 3.78e-49 169
Msa1308170 AT1G11450.2 33.333 303 198 4 49 350 2 301 4.85e-49 167
Msa1308170 AT4G01430.1 29.107 347 239 5 8 349 5 349 6.44e-49 169
Msa1308170 AT1G01070.1 31.437 334 222 4 1 330 5 335 3.20e-48 167
Msa1308170 AT5G40230.1 32.584 356 222 5 11 363 20 360 3.52e-48 167
Msa1308170 AT3G18200.1 33.929 224 142 2 109 330 1 220 7.00e-46 157
Msa1308170 AT1G70260.1 28.532 361 242 5 11 359 11 367 1.52e-45 160
Msa1308170 AT5G47470.1 31.322 348 217 6 16 359 34 363 1.64e-45 160
Msa1308170 AT5G47470.2 31.322 348 217 6 16 359 62 391 2.92e-45 160
Msa1308170 AT5G40240.1 31.889 323 216 3 11 330 19 340 5.69e-45 158
Msa1308170 AT5G40240.3 31.889 323 216 3 11 330 19 340 5.69e-45 158
Msa1308170 AT5G47470.3 32.288 319 204 5 16 330 62 372 6.63e-45 159
Msa1308170 AT5G40240.2 31.889 323 216 3 11 330 33 354 7.06e-45 159
Msa1308170 AT1G11450.1 34.091 264 165 4 91 350 2 260 2.79e-44 154
Msa1308170 AT4G01440.3 29.139 302 213 1 10 311 8 308 1.12e-43 154
Msa1308170 AT1G68170.1 30.726 358 234 4 13 364 4 353 3.63e-43 153
Msa1308170 AT5G45370.1 31.233 365 230 8 2 364 10 355 4.04e-43 153
Msa1308170 AT1G68170.2 30.726 358 234 4 13 364 14 363 6.01e-43 153
Msa1308170 AT4G15540.1 32.754 345 212 5 11 348 16 347 3.82e-42 150
Msa1308170 AT4G15540.2 32.754 345 212 5 11 348 16 347 3.82e-42 150
Msa1308170 AT5G45370.2 30.446 381 236 9 2 364 10 379 4.88e-42 151
Msa1308170 AT5G45370.4 30.446 381 236 9 2 364 10 379 4.88e-42 151
Msa1308170 AT2G37450.2 32.110 327 193 6 7 330 4 304 5.82e-42 150
Msa1308170 AT3G53210.3 36.653 251 143 4 14 258 12 252 1.22e-41 147
Msa1308170 AT1G01070.2 32.422 256 167 3 80 331 36 289 3.06e-40 145
Msa1308170 AT1G11450.4 31.208 298 202 3 12 308 16 311 5.46e-40 144
Msa1308170 AT4G16620.1 31.844 358 207 11 20 359 20 358 8.79e-40 144
Msa1308170 AT4G01430.2 28.889 315 217 5 8 317 5 317 5.32e-39 141
Msa1308170 AT4G01440.5 31.878 229 156 0 112 340 1 229 4.48e-38 137
Msa1308170 AT4G01440.2 31.878 229 156 0 112 340 1 229 4.48e-38 137
Msa1308170 AT3G45870.1 30.650 323 211 3 14 325 14 334 4.62e-38 140
Msa1308170 AT1G60050.1 26.796 362 249 4 8 360 9 363 1.93e-37 139
Msa1308170 AT5G40210.1 30.769 325 197 8 16 334 17 319 2.18e-36 135
Msa1308170 AT1G25270.1 28.125 320 227 2 13 330 4 322 2.50e-36 135
Msa1308170 AT5G64700.2 32.692 260 167 2 5 257 1 259 4.08e-36 132
Msa1308170 AT4G19185.1 31.118 331 209 6 16 330 25 352 4.69e-36 135
Msa1308170 AT4G01450.2 30.149 335 229 2 10 344 8 337 9.16e-35 131
Msa1308170 AT3G45870.8 29.545 308 204 3 14 310 14 319 3.71e-32 123
Msa1308170 AT2G37450.3 33.047 233 149 5 101 330 4 232 7.88e-31 118
Msa1308170 AT1G43650.2 31.967 244 162 3 14 257 9 248 1.62e-30 117
Msa1308170 AT4G19185.2 31.418 261 161 5 86 330 16 274 1.87e-30 119
Msa1308170 AT3G28080.5 29.707 239 160 5 97 330 9 244 1.97e-30 117
Msa1308170 AT3G28080.7 29.707 239 160 5 97 330 9 244 1.97e-30 117
Msa1308170 AT3G28080.8 29.707 239 160 5 97 330 9 244 1.97e-30 117
Msa1308170 AT3G28080.6 29.707 239 160 5 97 330 9 244 1.97e-30 117
Msa1308170 AT4G01450.1 28.763 299 208 2 10 308 8 301 2.69e-30 119
Msa1308170 AT5G45370.6 29.720 286 173 8 97 364 2 277 4.65e-30 116
Msa1308170 AT5G45370.5 29.720 286 173 8 97 364 2 277 4.65e-30 116
Msa1308170 AT3G28070.2 30.864 243 158 6 97 333 9 247 6.92e-30 115
Msa1308170 AT3G28100.1 29.167 240 166 3 97 333 98 336 7.28e-30 117
Msa1308170 AT3G28130.5 27.536 276 172 7 95 362 9 264 7.45e-30 115
Msa1308170 AT3G28130.1 27.536 276 172 7 95 362 9 264 7.45e-30 115
Msa1308170 AT3G28080.2 29.707 239 160 5 97 330 90 325 1.17e-29 117
Msa1308170 AT4G01430.3 29.108 213 146 3 141 349 1 212 1.40e-29 114
Msa1308170 AT3G28080.1 29.707 239 160 5 97 330 98 333 1.41e-29 117
Msa1308170 AT3G28130.2 27.536 276 172 7 95 362 95 350 2.51e-29 116
Msa1308170 AT4G08290.2 31.496 254 169 4 7 257 8 259 2.59e-29 114
Msa1308170 AT3G28070.1 30.453 243 159 6 97 333 101 339 3.34e-29 116
Msa1308170 AT4G16620.4 31.522 276 154 9 101 359 4 261 3.79e-29 114
Msa1308170 AT4G16620.2 31.522 276 154 9 101 359 4 261 3.79e-29 114
Msa1308170 AT2G37450.1 28.440 327 166 7 7 330 4 265 1.38e-28 113
Msa1308170 AT4G01440.4 28.112 249 178 1 10 258 8 255 1.02e-27 110
Msa1308170 AT4G24980.1 29.836 305 137 9 31 330 6 238 2.00e-26 106
Msa1308170 AT3G30340.2 29.464 224 156 2 36 258 35 257 1.56e-24 101
Msa1308170 AT3G45870.9 28.800 250 166 2 8 246 8 256 6.07e-24 100
Msa1308170 AT5G45370.3 28.906 256 154 8 127 364 74 319 1.66e-23 99.8
Msa1308170 AT3G28080.4 27.119 236 116 5 97 330 9 190 1.33e-22 95.1
Msa1308170 AT3G28080.9 28.095 210 143 5 126 330 1 207 3.04e-22 94.4
Msa1308170 AT3G45870.5 30.000 210 135 2 127 325 51 259 7.32e-22 95.1
Msa1308170 AT3G28080.3 27.119 236 116 5 97 330 98 279 1.01e-21 94.4
Msa1308170 AT4G01450.4 27.126 247 175 2 12 258 10 251 1.34e-21 93.2
Msa1308170 AT3G28070.5 28.505 214 143 6 126 333 1 210 1.55e-21 92.4
Msa1308170 AT4G16620.3 32.099 243 150 6 20 260 20 249 3.59e-21 92.4
Msa1308170 AT3G28130.3 25.306 245 155 7 126 362 1 225 4.44e-21 91.3
Msa1308170 AT3G28070.3 28.444 225 137 7 97 308 101 314 3.67e-20 90.5
Msa1308170 AT4G01450.3 27.228 202 142 2 12 213 10 206 1.33e-18 84.7
Msa1308170 AT3G45870.6 28.205 195 128 2 127 310 51 244 2.31e-16 78.2
Msa1308170 AT3G45870.7 28.205 195 128 2 127 310 51 244 2.31e-16 78.2
Msa1308170 AT3G45870.2 32.168 143 96 1 183 325 42 183 1.80e-15 75.5
Msa1308170 AT3G28100.2 31.061 132 89 1 97 226 98 229 1.30e-11 64.7

Find 75 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTATTCCTTAAATTTA+AGG 0.107153 8_4:+4380217 Msa1308170:CDS
GTTCCTCTTGCTTATTTATC+AGG 0.150190 8_4:+4380097 Msa1308170:CDS
CTTGGATGTCTGTCTCTTCT+TGG 0.151616 8_4:+4381282 Msa1308170:CDS
GTCTCATTAACCATAGATTT+TGG 0.153005 8_4:-4384212 None:intergenic
TATAATTGTTCCCACTATTT+TGG 0.158416 8_4:-4381139 None:intergenic
TTATTCATCACCTCACTAAT+TGG 0.166165 8_4:+4380252 Msa1308170:CDS
TGCACAAAGTGATATGTAAT+TGG 0.184770 8_4:-4383596 None:intergenic
TGGCACAAGAATGGCACTTT+TGG 0.214514 8_4:+4380015 Msa1308170:CDS
TGGTTTGTATATTGTACTTT+GGG 0.221964 8_4:+4384148 Msa1308170:CDS
ATCAACAACATAACTATTAT+TGG 0.259697 8_4:-4379965 None:intergenic
CACAATAATTTGTACTGTAT+TGG 0.284384 8_4:+4383934 Msa1308170:CDS
TTCTTGGATGCATTGTTGCT+TGG 0.293997 8_4:+4381298 Msa1308170:CDS
AGAGGAAGTGAAAATTGATT+TGG 0.299737 8_4:+4384235 Msa1308170:CDS
AATTAATCTTCCATGCATTA+AGG 0.305242 8_4:-4383678 None:intergenic
TCTTGGATGCATTGTTGCTT+GGG 0.331416 8_4:+4381299 Msa1308170:CDS
TATTCTGCATTTAGTAGCTT+TGG 0.332419 8_4:-4381201 None:intergenic
TTGATACAGTTCATACTTGC+AGG 0.337079 8_4:+4379983 Msa1308170:CDS
TTGGTTTGTATATTGTACTT+TGG 0.366744 8_4:+4384147 Msa1308170:CDS
CATGTATGTTATAGCTTGAT+AGG 0.374262 8_4:+4384107 Msa1308170:intron
GAAGATAGTTCCAAAATCTA+TGG 0.375558 8_4:+4384202 Msa1308170:CDS
TATTTCCTCATGAAGCAAAA+TGG 0.415481 8_4:-4383960 None:intergenic
TCAATCATGGCCACAACCTT+GGG 0.417804 8_4:+4381240 Msa1308170:CDS
GAGAACTATAGCCAAAATAG+TGG 0.417858 8_4:+4381128 Msa1308170:CDS
TATTCATCACCTCACTAATT+GGG 0.429304 8_4:+4380253 Msa1308170:CDS
ATCTTCCATGCATTAAGGTC+TGG 0.430798 8_4:-4383673 None:intergenic
TTTGTAATAGCAGCCTTAGT+AGG 0.434206 8_4:+4380994 Msa1308170:CDS
GGTGCAATTGGAGTGATCAT+TGG 0.438089 8_4:+4384128 Msa1308170:CDS
GTACAAATTATTGTGAAAAC+AGG 0.442998 8_4:-4383926 None:intergenic
ATCAATCATGGCCACAACCT+TGG 0.447093 8_4:+4381239 Msa1308170:CDS
TTCAAGCATGGTGCATTTCA+AGG 0.449157 8_4:+4383873 Msa1308170:CDS
TTCCTCTTGCTTATTTATCA+GGG 0.455915 8_4:+4380098 Msa1308170:CDS
TATAGCTTGATAGGTGCAAT+TGG 0.462823 8_4:+4384116 Msa1308170:intron
AGTATCTATTGCATTGTTGA+AGG 0.465625 8_4:+4381176 Msa1308170:CDS
CCTTGGGAAGTGATGAGAAT+TGG 0.468318 8_4:+4381256 Msa1308170:CDS
TGTGACTGCTGGAAGAAGAT+TGG 0.474246 8_4:-4380971 None:intergenic
TTATTCTAAGTAGAGTCATC+TGG 0.482290 8_4:-4384272 None:intergenic
CTCATCACTTCCCAAGGTTG+TGG 0.492623 8_4:-4381250 None:intergenic
CGGTATACTACAAATACCCT+TGG 0.508333 8_4:-4380049 None:intergenic
ATACTTGCAGGTCAGACTCT+TGG 0.509818 8_4:+4379995 Msa1308170:CDS
GCACAAAGTGATATGTAATT+GGG 0.510073 8_4:-4383595 None:intergenic
TTGGGATGACTTGCATAAGC+TGG 0.512749 8_4:-4383577 None:intergenic
ATTACATATCACTTTGTGCA+TGG 0.514897 8_4:+4383599 Msa1308170:CDS
GCTATTACAAATGTGACTGC+TGG 0.515370 8_4:-4380982 None:intergenic
GACTAGTAATTACCCTACTA+AGG 0.515800 8_4:-4381007 None:intergenic
TGCTGGAAGAAGATTGGAAA+TGG 0.517028 8_4:-4380965 None:intergenic
ATTACCTTCAAAATCAATCA+TGG 0.519905 8_4:+4381227 Msa1308170:CDS
GTAGAGTCATCTGGTAAAAG+AGG 0.523872 8_4:-4384263 None:intergenic
CAGCGCTACCAAGTTGAAGT+AGG 0.525332 8_4:-4383702 None:intergenic
AGTGATGAGAATTGGTTGCT+TGG 0.525946 8_4:+4381264 Msa1308170:CDS
TTGTAATAGCAGCCTTAGTA+GGG 0.526679 8_4:+4380995 Msa1308170:CDS
GGAACAATTATATGTGTAAG+TGG 0.530656 8_4:+4381150 Msa1308170:CDS
TCAGACTCTTGGCACAAGAA+TGG 0.551895 8_4:+4380006 Msa1308170:CDS
CCAATTCTCATCACTTCCCA+AGG 0.553764 8_4:-4381256 None:intergenic
GTATCTATTGCATTGTTGAA+GGG 0.561664 8_4:+4381177 Msa1308170:CDS
CTTCATGAGGAAATATACGT+TGG 0.565456 8_4:+4383968 Msa1308170:CDS
GGTATACTACAAATACCCTT+GGG 0.570670 8_4:-4380048 None:intergenic
ATTAATTCCCTACTTCAACT+TGG 0.571381 8_4:+4383694 Msa1308170:CDS
GGTTTGTATATTGTACTTTG+GGG 0.583776 8_4:+4384149 Msa1308170:CDS
ATGAGGAAATATACGTTGGA+AGG 0.583813 8_4:+4383972 Msa1308170:CDS
TACCCTGATAAATAAGCAAG+AGG 0.584882 8_4:-4380100 None:intergenic
TAGAGCCAGACCTTAATGCA+TGG 0.585991 8_4:+4383668 Msa1308170:CDS
TAATATACTGTCTTCAAGCA+TGG 0.591380 8_4:+4383861 Msa1308170:CDS
AGCGCTACCAAGTTGAAGTA+GGG 0.593953 8_4:-4383701 None:intergenic
AGAACTATAGCCAAAATAGT+GGG 0.616313 8_4:+4381129 Msa1308170:CDS
ACAACATAACTATTATTGGT+AGG 0.617442 8_4:-4379961 None:intergenic
ATCTATGGTTAATGAGACAG+AGG 0.628100 8_4:+4384217 Msa1308170:CDS
GTAAACATAGCAGAGAAGAG+AGG 0.639250 8_4:-4383902 None:intergenic
GCATGGTGCATTTCAAGGAG+AGG 0.640869 8_4:+4383878 Msa1308170:CDS
TTTGAGGAAGAAAAGATGGG+GGG 0.646206 8_4:+4379917 Msa1308170:exon
GGAAACAAACCCAATTAGTG+AGG 0.653573 8_4:-4380262 None:intergenic
AGCAAGAGGAACAAGAACAA+TGG 0.659708 8_4:-4380086 None:intergenic
TTTGGAGGGTATGAGCCCAA+GGG 0.663720 8_4:+4380033 Msa1308170:CDS
TAGTGAGGTGATGAATAACA+AGG 0.667455 8_4:-4380247 None:intergenic
AGGGTATTTGTAGTATACCG+TGG 0.700140 8_4:+4380052 Msa1308170:CDS
CAATGGTTGCAAAAGCACCA+CGG 0.718729 8_4:-4380069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCAAAATTTATATTTTGA+GGG + chr8_4:4380910-4380929 Msa1308170:CDS 10.0%
!! AAAAAAAAATCTATATTTGA+TGG - chr8_4:4381536-4381555 None:intergenic 10.0%
!!! ATACTAGTTAATATTTTATA+TGG - chr8_4:4382916-4382935 None:intergenic 10.0%
!! TTAGTTAGATTAATAATAAT+TGG - chr8_4:4384072-4384091 None:intergenic 10.0%
!!! AATCAAAATTTATATTTTGA+GGG + chr8_4:4380910-4380929 Msa1308170:CDS 10.0%
!! AAAAAAAAATCTATATTTGA+TGG - chr8_4:4381536-4381555 None:intergenic 10.0%
!!! ATACTAGTTAATATTTTATA+TGG - chr8_4:4382916-4382935 None:intergenic 10.0%
!! TTAGTTAGATTAATAATAAT+TGG - chr8_4:4384072-4384091 None:intergenic 10.0%
!! AAAATGAAGAAAAAAACAAT+AGG - chr8_4:4380181-4380200 None:intergenic 15.0%
!! ATTATTTAGTCAAACAAAAA+AGG - chr8_4:4380507-4380526 None:intergenic 15.0%
!!! TTTTTTTTGATTTGAAAGAA+TGG + chr8_4:4380619-4380638 Msa1308170:intron 15.0%
!!! ATATACTTTTATTGATGAAT+TGG + chr8_4:4380704-4380723 Msa1308170:intron 15.0%
!!! TATACTTTTATTGATGAATT+GGG + chr8_4:4380705-4380724 Msa1308170:intron 15.0%
!!! GAATCAAAATTTATATTTTG+AGG + chr8_4:4380909-4380928 Msa1308170:CDS 15.0%
!! AAATTGAATATATTACAGAA+TGG + chr8_4:4381083-4381102 Msa1308170:intron 15.0%
!! ATGTTAGAAAAGAATAATTA+AGG - chr8_4:4381643-4381662 None:intergenic 15.0%
!! GGAAAATTAATAAATAGTTA+AGG + chr8_4:4381827-4381846 Msa1308170:intron 15.0%
!!! AAAATTATATGTCGTTTTTT+TGG - chr8_4:4381996-4382015 None:intergenic 15.0%
!!! AAATTTTTTTCTTCCTAAAA+TGG + chr8_4:4382067-4382086 Msa1308170:intron 15.0%
!! AAAAAAATTTCTTCCTAAAA+TGG + chr8_4:4382230-4382249 Msa1308170:intron 15.0%
!!! TTTTTCCATATCATTTATTA+AGG - chr8_4:4382657-4382676 None:intergenic 15.0%
!! ATTTAAAGAATTGAAAAAAG+AGG + chr8_4:4382681-4382700 Msa1308170:intron 15.0%
!! ATTGTAAAACGAATATAATT+TGG + chr8_4:4382760-4382779 Msa1308170:intron 15.0%
!! TTGTAAAACGAATATAATTT+GGG + chr8_4:4382761-4382780 Msa1308170:intron 15.0%
!! TTTAATGATAATAAATCAGT+AGG + chr8_4:4383179-4383198 Msa1308170:intron 15.0%
!! AAAGGATGATATTATAAATA+TGG - chr8_4:4383468-4383487 None:intergenic 15.0%
!!! TTTAAGGATTGATTTATTAA+AGG - chr8_4:4383486-4383505 None:intergenic 15.0%
!!! TAATTAATACATTATTTTGC+AGG + chr8_4:4383820-4383839 Msa1308170:intron 15.0%
!!! AATTAATACATTATTTTGCA+GGG + chr8_4:4383821-4383840 Msa1308170:intron 15.0%
!! AAAATGAAGAAAAAAACAAT+AGG - chr8_4:4380181-4380200 None:intergenic 15.0%
!! ATTATTTAGTCAAACAAAAA+AGG - chr8_4:4380507-4380526 None:intergenic 15.0%
!!! TTTTTTTTGATTTGAAAGAA+TGG + chr8_4:4380619-4380638 Msa1308170:intron 15.0%
!!! ATATACTTTTATTGATGAAT+TGG + chr8_4:4380704-4380723 Msa1308170:intron 15.0%
!!! TATACTTTTATTGATGAATT+GGG + chr8_4:4380705-4380724 Msa1308170:intron 15.0%
!!! GAATCAAAATTTATATTTTG+AGG + chr8_4:4380909-4380928 Msa1308170:CDS 15.0%
!! AAATTGAATATATTACAGAA+TGG + chr8_4:4381083-4381102 Msa1308170:intron 15.0%
!! ATGTTAGAAAAGAATAATTA+AGG - chr8_4:4381643-4381662 None:intergenic 15.0%
!! GGAAAATTAATAAATAGTTA+AGG + chr8_4:4381827-4381846 Msa1308170:intron 15.0%
!!! AAAATTATATGTCGTTTTTT+TGG - chr8_4:4381996-4382015 None:intergenic 15.0%
!!! AAATTTTTTTCTTCCTAAAA+TGG + chr8_4:4382067-4382086 Msa1308170:intron 15.0%
!! AAAAAAATTTCTTCCTAAAA+TGG + chr8_4:4382230-4382249 Msa1308170:intron 15.0%
!!! TTTTTCCATATCATTTATTA+AGG - chr8_4:4382657-4382676 None:intergenic 15.0%
!! ATTTAAAGAATTGAAAAAAG+AGG + chr8_4:4382681-4382700 Msa1308170:intron 15.0%
!! ATTGTAAAACGAATATAATT+TGG + chr8_4:4382760-4382779 Msa1308170:intron 15.0%
!! TTGTAAAACGAATATAATTT+GGG + chr8_4:4382761-4382780 Msa1308170:intron 15.0%
!! TTTAATGATAATAAATCAGT+AGG + chr8_4:4383179-4383198 Msa1308170:intron 15.0%
!! AAAGGATGATATTATAAATA+TGG - chr8_4:4383468-4383487 None:intergenic 15.0%
!!! TTTAAGGATTGATTTATTAA+AGG - chr8_4:4383486-4383505 None:intergenic 15.0%
!!! TAATTAATACATTATTTTGC+AGG + chr8_4:4383820-4383839 Msa1308170:intron 15.0%
!!! AATTAATACATTATTTTGCA+GGG + chr8_4:4383821-4383840 Msa1308170:intron 15.0%
!! ATCAACAACATAACTATTAT+TGG - chr8_4:4379968-4379987 None:intergenic 20.0%
!! AAGAAAAAAACTACTGTATT+TGG + chr8_4:4380423-4380442 Msa1308170:intron 20.0%
!! AGAAAAAAACTACTGTATTT+GGG + chr8_4:4380424-4380443 Msa1308170:intron 20.0%
!!! GAATAGATTTTTTTTGTAAG+AGG + chr8_4:4380561-4380580 Msa1308170:intron 20.0%
!! TTTGATTGAGTAACAAAAAT+AGG - chr8_4:4381035-4381054 None:intergenic 20.0%
!! TTCAATTAAAATAAACACCT+TGG - chr8_4:4381065-4381084 None:intergenic 20.0%
!! AGAGATAAAGATCAATATAT+AGG + chr8_4:4381451-4381470 Msa1308170:intron 20.0%
!! GAGATAAAGATCAATATATA+GGG + chr8_4:4381452-4381471 Msa1308170:intron 20.0%
!!! AAATCTATATTTGATGGTTA+TGG - chr8_4:4381530-4381549 None:intergenic 20.0%
!! AAATGACTAAAAAAATCTCA+AGG - chr8_4:4381586-4381605 None:intergenic 20.0%
!! ATTGTCCTTAATAAATAGTA+TGG + chr8_4:4381778-4381797 Msa1308170:intron 20.0%
!!! CTTTTCCATACTATTTATTA+AGG - chr8_4:4381786-4381805 None:intergenic 20.0%
!!! AAAAACGACATATAATTTTC+CGG + chr8_4:4381997-4382016 Msa1308170:intron 20.0%
!!! CAAATTATATGTCGTTTTTT+TGG - chr8_4:4382043-4382062 None:intergenic 20.0%
!!! TCTTAATTATATGCCATTTT+AGG - chr8_4:4382083-4382102 None:intergenic 20.0%
!! AAATGGCATATAATTAAGAA+TGG + chr8_4:4382084-4382103 Msa1308170:intron 20.0%
!!! TCTTAATTATATGCCATTTT+AGG - chr8_4:4382083-4382102 None:intergenic 20.0%
!! AAATGGCATATAATTAAGAA+TGG + chr8_4:4382084-4382103 Msa1308170:intron 20.0%
!! ATTGTCCTTAATAAATGATA+TGG + chr8_4:4382649-4382668 Msa1308170:intron 20.0%
!! TAGCTAACTTCAATATTTAT+AGG + chr8_4:4383270-4383289 Msa1308170:intron 20.0%
!! AGCTAACTTCAATATTTATA+GGG + chr8_4:4383271-4383290 Msa1308170:intron 20.0%
!! TATGAGAAAATATGCATTTA+AGG - chr8_4:4383502-4383521 None:intergenic 20.0%
!!! CTTAACACAAATTGAATTTT+AGG + chr8_4:4384037-4384056 Msa1308170:intron 20.0%
!!! CAATAGCTTTTTTATTCAAT+TGG + chr8_4:4384318-4384337 Msa1308170:three_prime_UTR 20.0%
!!! TTTTGATAAACACATTGAAA+TGG + chr8_4:4384531-4384550 Msa1308170:three_prime_UTR 20.0%
!! ATCAACAACATAACTATTAT+TGG - chr8_4:4379968-4379987 None:intergenic 20.0%
!! AAGAAAAAAACTACTGTATT+TGG + chr8_4:4380423-4380442 Msa1308170:intron 20.0%
!! AGAAAAAAACTACTGTATTT+GGG + chr8_4:4380424-4380443 Msa1308170:intron 20.0%
!!! GAATAGATTTTTTTTGTAAG+AGG + chr8_4:4380561-4380580 Msa1308170:intron 20.0%
!! TTTGATTGAGTAACAAAAAT+AGG - chr8_4:4381035-4381054 None:intergenic 20.0%
!! TTCAATTAAAATAAACACCT+TGG - chr8_4:4381065-4381084 None:intergenic 20.0%
!! AGAGATAAAGATCAATATAT+AGG + chr8_4:4381451-4381470 Msa1308170:intron 20.0%
!! GAGATAAAGATCAATATATA+GGG + chr8_4:4381452-4381471 Msa1308170:intron 20.0%
!!! AAATCTATATTTGATGGTTA+TGG - chr8_4:4381530-4381549 None:intergenic 20.0%
!! AAATGACTAAAAAAATCTCA+AGG - chr8_4:4381586-4381605 None:intergenic 20.0%
!! ATTGTCCTTAATAAATAGTA+TGG + chr8_4:4381778-4381797 Msa1308170:intron 20.0%
!!! CTTTTCCATACTATTTATTA+AGG - chr8_4:4381786-4381805 None:intergenic 20.0%
!!! AAAAACGACATATAATTTTC+CGG + chr8_4:4381997-4382016 Msa1308170:intron 20.0%
!!! CAAATTATATGTCGTTTTTT+TGG - chr8_4:4382043-4382062 None:intergenic 20.0%
!!! TCTTAATTATATGCCATTTT+AGG - chr8_4:4382083-4382102 None:intergenic 20.0%
!! AAATGGCATATAATTAAGAA+TGG + chr8_4:4382084-4382103 Msa1308170:intron 20.0%
!!! TCTTAATTATATGCCATTTT+AGG - chr8_4:4382083-4382102 None:intergenic 20.0%
!! AAATGGCATATAATTAAGAA+TGG + chr8_4:4382084-4382103 Msa1308170:intron 20.0%
!! ATTGTCCTTAATAAATGATA+TGG + chr8_4:4382649-4382668 Msa1308170:intron 20.0%
!! TAGCTAACTTCAATATTTAT+AGG + chr8_4:4383270-4383289 Msa1308170:intron 20.0%
!! AGCTAACTTCAATATTTATA+GGG + chr8_4:4383271-4383290 Msa1308170:intron 20.0%
!! TATGAGAAAATATGCATTTA+AGG - chr8_4:4383502-4383521 None:intergenic 20.0%
!!! CTTAACACAAATTGAATTTT+AGG + chr8_4:4384037-4384056 Msa1308170:intron 20.0%
!!! CAATAGCTTTTTTATTCAAT+TGG + chr8_4:4384318-4384337 Msa1308170:three_prime_UTR 20.0%
!!! TTTTGATAAACACATTGAAA+TGG + chr8_4:4384531-4384550 Msa1308170:three_prime_UTR 20.0%
!!! TTTTTTGAGGAAGAAAAGAT+GGG + chr8_4:4379914-4379933 Msa1308170:exon 25.0%
! ACAACATAACTATTATTGGT+AGG - chr8_4:4379964-4379983 None:intergenic 25.0%
!!! GTTTTTTTCTTCATTTTGAC+AGG + chr8_4:4380184-4380203 Msa1308170:intron 25.0%
! GCTCTTATTCCTTAAATTTA+AGG + chr8_4:4380217-4380236 Msa1308170:CDS 25.0%
! GGAAAAACTCCTTAAATTTA+AGG - chr8_4:4380229-4380248 None:intergenic 25.0%
! TTCTTTGTCAAATTGATGAA+AGG - chr8_4:4380544-4380563 None:intergenic 25.0%
!! TATAATTGTTCCCACTATTT+TGG - chr8_4:4381142-4381161 None:intergenic 25.0%
! ATTACCTTCAAAATCAATCA+TGG + chr8_4:4381227-4381246 Msa1308170:CDS 25.0%
! CAAAAGGTTTATGTCAAATA+TGG + chr8_4:4381366-4381385 Msa1308170:intron 25.0%
! TAGAAAAGAATAATTAAGGC+AGG - chr8_4:4381639-4381658 None:intergenic 25.0%
! ACATAAAAATATGCAAAGTC+CGG + chr8_4:4381950-4381969 Msa1308170:intron 25.0%
!!! ATTATATGTCGTTTTTTTGG+TGG - chr8_4:4381993-4382012 None:intergenic 25.0%
!! AAAACGACATATAATTTTCC+GGG + chr8_4:4381998-4382017 Msa1308170:intron 25.0%
!!! ATTATATGTCGTTTTTTTGG+TGG - chr8_4:4381993-4382012 None:intergenic 25.0%
! TGTCATACCAACATTATTAA+TGG - chr8_4:4382211-4382230 None:intergenic 25.0%
! GAGGAAGTAATAAATAGTTA+AGG + chr8_4:4382700-4382719 Msa1308170:intron 25.0%
!! CATATAGGTGAAACAATTTT+TGG - chr8_4:4383016-4383035 None:intergenic 25.0%
! TGGTTAATAAGCTTAACAAA+AGG - chr8_4:4383068-4383087 None:intergenic 25.0%
!! TAAAATGAGCAATTTTGCAT+TGG + chr8_4:4383334-4383353 Msa1308170:intron 25.0%
! AACCTGGTGAAAATTATAAA+GGG - chr8_4:4383557-4383576 None:intergenic 25.0%
! AATTAATCTTCCATGCATTA+AGG - chr8_4:4383681-4383700 None:intergenic 25.0%
! GTACAAATTATTGTGAAAAC+AGG - chr8_4:4383929-4383948 None:intergenic 25.0%
!! CACAATAATTTGTACTGTAT+TGG + chr8_4:4383934-4383953 Msa1308170:CDS 25.0%
!!! TTGGTTTGTATATTGTACTT+TGG + chr8_4:4384147-4384166 Msa1308170:CDS 25.0%
!! TGGTTTGTATATTGTACTTT+GGG + chr8_4:4384148-4384167 Msa1308170:CDS 25.0%
! TTCAAAAACAAAATTGCATC+AGG + chr8_4:4384374-4384393 Msa1308170:three_prime_UTR 25.0%
!!! TTTTTTGAGGAAGAAAAGAT+GGG + chr8_4:4379914-4379933 Msa1308170:exon 25.0%
! ACAACATAACTATTATTGGT+AGG - chr8_4:4379964-4379983 None:intergenic 25.0%
!!! GTTTTTTTCTTCATTTTGAC+AGG + chr8_4:4380184-4380203 Msa1308170:intron 25.0%
! GCTCTTATTCCTTAAATTTA+AGG + chr8_4:4380217-4380236 Msa1308170:CDS 25.0%
! GGAAAAACTCCTTAAATTTA+AGG - chr8_4:4380229-4380248 None:intergenic 25.0%
! TTCTTTGTCAAATTGATGAA+AGG - chr8_4:4380544-4380563 None:intergenic 25.0%
!! TATAATTGTTCCCACTATTT+TGG - chr8_4:4381142-4381161 None:intergenic 25.0%
! ATTACCTTCAAAATCAATCA+TGG + chr8_4:4381227-4381246 Msa1308170:CDS 25.0%
! CAAAAGGTTTATGTCAAATA+TGG + chr8_4:4381366-4381385 Msa1308170:intron 25.0%
! TAGAAAAGAATAATTAAGGC+AGG - chr8_4:4381639-4381658 None:intergenic 25.0%
! ACATAAAAATATGCAAAGTC+CGG + chr8_4:4381950-4381969 Msa1308170:intron 25.0%
!!! ATTATATGTCGTTTTTTTGG+TGG - chr8_4:4381993-4382012 None:intergenic 25.0%
!! AAAACGACATATAATTTTCC+GGG + chr8_4:4381998-4382017 Msa1308170:intron 25.0%
!!! ATTATATGTCGTTTTTTTGG+TGG - chr8_4:4381993-4382012 None:intergenic 25.0%
! TGTCATACCAACATTATTAA+TGG - chr8_4:4382211-4382230 None:intergenic 25.0%
! GAGGAAGTAATAAATAGTTA+AGG + chr8_4:4382700-4382719 Msa1308170:intron 25.0%
!! CATATAGGTGAAACAATTTT+TGG - chr8_4:4383016-4383035 None:intergenic 25.0%
! TGGTTAATAAGCTTAACAAA+AGG - chr8_4:4383068-4383087 None:intergenic 25.0%
!! TAAAATGAGCAATTTTGCAT+TGG + chr8_4:4383334-4383353 Msa1308170:intron 25.0%
! AACCTGGTGAAAATTATAAA+GGG - chr8_4:4383557-4383576 None:intergenic 25.0%
! AATTAATCTTCCATGCATTA+AGG - chr8_4:4383681-4383700 None:intergenic 25.0%
! GTACAAATTATTGTGAAAAC+AGG - chr8_4:4383929-4383948 None:intergenic 25.0%
!! CACAATAATTTGTACTGTAT+TGG + chr8_4:4383934-4383953 Msa1308170:CDS 25.0%
!!! TTGGTTTGTATATTGTACTT+TGG + chr8_4:4384147-4384166 Msa1308170:CDS 25.0%
!! TGGTTTGTATATTGTACTTT+GGG + chr8_4:4384148-4384167 Msa1308170:CDS 25.0%
! TTCAAAAACAAAATTGCATC+AGG + chr8_4:4384374-4384393 Msa1308170:three_prime_UTR 25.0%
!!! GTTTTTTGAGGAAGAAAAGA+TGG + chr8_4:4379913-4379932 Msa1308170:exon 30.0%
!! TTTTTGAGGAAGAAAAGATG+GGG + chr8_4:4379915-4379934 Msa1308170:exon 30.0%
TTCCTCTTGCTTATTTATCA+GGG + chr8_4:4380098-4380117 Msa1308170:CDS 30.0%
AACAAGAAACTAAAGAGAAG+TGG - chr8_4:4380136-4380155 None:intergenic 30.0%
TTATTCATCACCTCACTAAT+TGG + chr8_4:4380252-4380271 Msa1308170:CDS 30.0%
TATTCATCACCTCACTAATT+GGG + chr8_4:4380253-4380272 Msa1308170:CDS 30.0%
GTAAATTACTAGAGAGAGAA+TGG - chr8_4:4380286-4380305 None:intergenic 30.0%
CTAAATTATCAGCACAGTTA+TGG - chr8_4:4380462-4380481 None:intergenic 30.0%
!!! TAAAGTTTTGAGTGACTATG+TGG + chr8_4:4380789-4380808 Msa1308170:intron 30.0%
ACTATGTGGTGCTTATATAA+TGG + chr8_4:4380803-4380822 Msa1308170:intron 30.0%
CTCAATCAAAATTCAAACCA+AGG + chr8_4:4381045-4381064 Msa1308170:intron 30.0%
AGAACTATAGCCAAAATAGT+GGG + chr8_4:4381129-4381148 Msa1308170:CDS 30.0%
GGAACAATTATATGTGTAAG+TGG + chr8_4:4381150-4381169 Msa1308170:CDS 30.0%
AGTATCTATTGCATTGTTGA+AGG + chr8_4:4381176-4381195 Msa1308170:CDS 30.0%
GTATCTATTGCATTGTTGAA+GGG + chr8_4:4381177-4381196 Msa1308170:CDS 30.0%
TATTCTGCATTTAGTAGCTT+TGG - chr8_4:4381204-4381223 None:intergenic 30.0%
CATAAAAATATGCAAAGTCC+GGG + chr8_4:4381951-4381970 Msa1308170:intron 30.0%
ATAAAAATATGCAAAGTCCG+GGG + chr8_4:4381952-4381971 Msa1308170:intron 30.0%
! AAACGACATATAATTTTCCG+GGG + chr8_4:4381999-4382018 Msa1308170:intron 30.0%
CAAACAGATGGAGTAATAAA+AGG + chr8_4:4382143-4382162 Msa1308170:intron 30.0%
ATTAATGGCTTCTCAATGAT+GGG - chr8_4:4382196-4382215 None:intergenic 30.0%
TATTAATGGCTTCTCAATGA+TGG - chr8_4:4382197-4382216 None:intergenic 30.0%
TGAGAAGCCATTAATAATGT+TGG + chr8_4:4382201-4382220 Msa1308170:intron 30.0%
CAAACAGATGGAGTAATAAA+AGG + chr8_4:4382143-4382162 Msa1308170:intron 30.0%
TTAATGGCTTCTCAAATGAT+GGG - chr8_4:4382366-4382385 None:intergenic 30.0%
ATTAATGGCTTCTCAAATGA+TGG - chr8_4:4382367-4382386 None:intergenic 30.0%
TGAGAAGCCATTAATAATGT+TGG + chr8_4:4382201-4382220 Msa1308170:intron 30.0%
AGTGGAACCAACATTATTAA+TGG - chr8_4:4382382-4382401 None:intergenic 30.0%
!! TTAATAATGTTGGTTCCACT+AGG + chr8_4:4382382-4382401 Msa1308170:intron 30.0%
! GCATGTGTTGTTAGTAATTT+AGG + chr8_4:4382512-4382531 Msa1308170:intron 30.0%
TTCCAAAGCGACATATAATT+TGG + chr8_4:4382794-4382813 Msa1308170:intron 30.0%
TCCAAAGCGACATATAATTT+GGG + chr8_4:4382795-4382814 Msa1308170:intron 30.0%
CCTAATTCATCGTTACAAAA+TGG - chr8_4:4383121-4383140 None:intergenic 30.0%
! CCATTTTGTAACGATGAATT+AGG + chr8_4:4383118-4383137 Msa1308170:intron 30.0%
AAAATTATAAAGGGAGGCAA+AGG - chr8_4:4383548-4383567 None:intergenic 30.0%
GAACCTGGTGAAAATTATAA+AGG - chr8_4:4383558-4383577 None:intergenic 30.0%
GCACAAAGTGATATGTAATT+GGG - chr8_4:4383598-4383617 None:intergenic 30.0%
TGCACAAAGTGATATGTAAT+TGG - chr8_4:4383599-4383618 None:intergenic 30.0%
ATTACATATCACTTTGTGCA+TGG + chr8_4:4383599-4383618 Msa1308170:CDS 30.0%
ATTAATTCCCTACTTCAACT+TGG + chr8_4:4383694-4383713 Msa1308170:CDS 30.0%
!! ATTATTTTGCAGGGAGTTAT+GGG + chr8_4:4383830-4383849 Msa1308170:intron 30.0%
TAATATACTGTCTTCAAGCA+TGG + chr8_4:4383861-4383880 Msa1308170:CDS 30.0%
TATTTCCTCATGAAGCAAAA+TGG - chr8_4:4383963-4383982 None:intergenic 30.0%
CATGTATGTTATAGCTTGAT+AGG + chr8_4:4384107-4384126 Msa1308170:intron 30.0%
GGTTTGTATATTGTACTTTG+GGG + chr8_4:4384149-4384168 Msa1308170:CDS 30.0%
GAAGATAGTTCCAAAATCTA+TGG + chr8_4:4384202-4384221 Msa1308170:CDS 30.0%
! GTCTCATTAACCATAGATTT+TGG - chr8_4:4384215-4384234 None:intergenic 30.0%
AGAGGAAGTGAAAATTGATT+TGG + chr8_4:4384235-4384254 Msa1308170:CDS 30.0%
TTATTCTAAGTAGAGTCATC+TGG - chr8_4:4384275-4384294 None:intergenic 30.0%
!!! GTTTTTTGAGGAAGAAAAGA+TGG + chr8_4:4379913-4379932 Msa1308170:exon 30.0%
!! TTTTTGAGGAAGAAAAGATG+GGG + chr8_4:4379915-4379934 Msa1308170:exon 30.0%
TTCCTCTTGCTTATTTATCA+GGG + chr8_4:4380098-4380117 Msa1308170:CDS 30.0%
AACAAGAAACTAAAGAGAAG+TGG - chr8_4:4380136-4380155 None:intergenic 30.0%
TTATTCATCACCTCACTAAT+TGG + chr8_4:4380252-4380271 Msa1308170:CDS 30.0%
TATTCATCACCTCACTAATT+GGG + chr8_4:4380253-4380272 Msa1308170:CDS 30.0%
GTAAATTACTAGAGAGAGAA+TGG - chr8_4:4380286-4380305 None:intergenic 30.0%
CTAAATTATCAGCACAGTTA+TGG - chr8_4:4380462-4380481 None:intergenic 30.0%
!!! TAAAGTTTTGAGTGACTATG+TGG + chr8_4:4380789-4380808 Msa1308170:intron 30.0%
ACTATGTGGTGCTTATATAA+TGG + chr8_4:4380803-4380822 Msa1308170:intron 30.0%
CTCAATCAAAATTCAAACCA+AGG + chr8_4:4381045-4381064 Msa1308170:intron 30.0%
AGAACTATAGCCAAAATAGT+GGG + chr8_4:4381129-4381148 Msa1308170:CDS 30.0%
GGAACAATTATATGTGTAAG+TGG + chr8_4:4381150-4381169 Msa1308170:CDS 30.0%
AGTATCTATTGCATTGTTGA+AGG + chr8_4:4381176-4381195 Msa1308170:CDS 30.0%
GTATCTATTGCATTGTTGAA+GGG + chr8_4:4381177-4381196 Msa1308170:CDS 30.0%
TATTCTGCATTTAGTAGCTT+TGG - chr8_4:4381204-4381223 None:intergenic 30.0%
CATAAAAATATGCAAAGTCC+GGG + chr8_4:4381951-4381970 Msa1308170:intron 30.0%
ATAAAAATATGCAAAGTCCG+GGG + chr8_4:4381952-4381971 Msa1308170:intron 30.0%
! AAACGACATATAATTTTCCG+GGG + chr8_4:4381999-4382018 Msa1308170:intron 30.0%
CAAACAGATGGAGTAATAAA+AGG + chr8_4:4382143-4382162 Msa1308170:intron 30.0%
ATTAATGGCTTCTCAATGAT+GGG - chr8_4:4382196-4382215 None:intergenic 30.0%
TATTAATGGCTTCTCAATGA+TGG - chr8_4:4382197-4382216 None:intergenic 30.0%
TGAGAAGCCATTAATAATGT+TGG + chr8_4:4382201-4382220 Msa1308170:intron 30.0%
CAAACAGATGGAGTAATAAA+AGG + chr8_4:4382143-4382162 Msa1308170:intron 30.0%
TTAATGGCTTCTCAAATGAT+GGG - chr8_4:4382366-4382385 None:intergenic 30.0%
ATTAATGGCTTCTCAAATGA+TGG - chr8_4:4382367-4382386 None:intergenic 30.0%
TGAGAAGCCATTAATAATGT+TGG + chr8_4:4382201-4382220 Msa1308170:intron 30.0%
AGTGGAACCAACATTATTAA+TGG - chr8_4:4382382-4382401 None:intergenic 30.0%
!! TTAATAATGTTGGTTCCACT+AGG + chr8_4:4382382-4382401 Msa1308170:intron 30.0%
! GCATGTGTTGTTAGTAATTT+AGG + chr8_4:4382512-4382531 Msa1308170:intron 30.0%
TTCCAAAGCGACATATAATT+TGG + chr8_4:4382794-4382813 Msa1308170:intron 30.0%
TCCAAAGCGACATATAATTT+GGG + chr8_4:4382795-4382814 Msa1308170:intron 30.0%
CCTAATTCATCGTTACAAAA+TGG - chr8_4:4383121-4383140 None:intergenic 30.0%
! CCATTTTGTAACGATGAATT+AGG + chr8_4:4383118-4383137 Msa1308170:intron 30.0%
AAAATTATAAAGGGAGGCAA+AGG - chr8_4:4383548-4383567 None:intergenic 30.0%
GAACCTGGTGAAAATTATAA+AGG - chr8_4:4383558-4383577 None:intergenic 30.0%
GCACAAAGTGATATGTAATT+GGG - chr8_4:4383598-4383617 None:intergenic 30.0%
TGCACAAAGTGATATGTAAT+TGG - chr8_4:4383599-4383618 None:intergenic 30.0%
ATTACATATCACTTTGTGCA+TGG + chr8_4:4383599-4383618 Msa1308170:CDS 30.0%
ATTAATTCCCTACTTCAACT+TGG + chr8_4:4383694-4383713 Msa1308170:CDS 30.0%
!! ATTATTTTGCAGGGAGTTAT+GGG + chr8_4:4383830-4383849 Msa1308170:intron 30.0%
TAATATACTGTCTTCAAGCA+TGG + chr8_4:4383861-4383880 Msa1308170:CDS 30.0%
TATTTCCTCATGAAGCAAAA+TGG - chr8_4:4383963-4383982 None:intergenic 30.0%
CATGTATGTTATAGCTTGAT+AGG + chr8_4:4384107-4384126 Msa1308170:intron 30.0%
GGTTTGTATATTGTACTTTG+GGG + chr8_4:4384149-4384168 Msa1308170:CDS 30.0%
GAAGATAGTTCCAAAATCTA+TGG + chr8_4:4384202-4384221 Msa1308170:CDS 30.0%
! GTCTCATTAACCATAGATTT+TGG - chr8_4:4384215-4384234 None:intergenic 30.0%
AGAGGAAGTGAAAATTGATT+TGG + chr8_4:4384235-4384254 Msa1308170:CDS 30.0%
TTATTCTAAGTAGAGTCATC+TGG - chr8_4:4384275-4384294 None:intergenic 30.0%
!!! TAAGCATCGAGTGTTTTTTG+AGG + chr8_4:4379901-4379920 Msa1308170:five_prime_UTR 35.0%
!! TTTTGAGGAAGAAAAGATGG+GGG + chr8_4:4379916-4379935 Msa1308170:exon 35.0%
TTGATACAGTTCATACTTGC+AGG + chr8_4:4379983-4380002 Msa1308170:CDS 35.0%
GGTATACTACAAATACCCTT+GGG - chr8_4:4380051-4380070 None:intergenic 35.0%
GTTCCTCTTGCTTATTTATC+AGG + chr8_4:4380097-4380116 Msa1308170:CDS 35.0%
TACCCTGATAAATAAGCAAG+AGG - chr8_4:4380103-4380122 None:intergenic 35.0%
!! CATTTTGACAGGAGAAATTC+TGG + chr8_4:4380195-4380214 Msa1308170:intron 35.0%
TAGTGAGGTGATGAATAACA+AGG - chr8_4:4380250-4380269 None:intergenic 35.0%
TTTGTAATAGCAGCCTTAGT+AGG + chr8_4:4380994-4381013 Msa1308170:CDS 35.0%
TTGTAATAGCAGCCTTAGTA+GGG + chr8_4:4380995-4381014 Msa1308170:CDS 35.0%
GACTAGTAATTACCCTACTA+AGG - chr8_4:4381010-4381029 None:intergenic 35.0%
GAGAACTATAGCCAAAATAG+TGG + chr8_4:4381128-4381147 Msa1308170:CDS 35.0%
! GGCAATTTTTCTCATTTTGC+AGG + chr8_4:4381320-4381339 Msa1308170:CDS 35.0%
ATCGATACTCTGACATCAAA+AGG + chr8_4:4381350-4381369 Msa1308170:intron 35.0%
ACACGTCATATAACTTGAGA+CGG - chr8_4:4381683-4381702 None:intergenic 35.0%
!!! ATATGTCGTTTTTTTGGTGG+CGG - chr8_4:4381990-4382009 None:intergenic 35.0%
!!! ATATGTCGTTTTTTTGGTGG+CGG - chr8_4:4381990-4382009 None:intergenic 35.0%
! TACTCCATCTGTTTGAAGTT+GGG - chr8_4:4382138-4382157 None:intergenic 35.0%
! TTACTCCATCTGTTTGAAGT+TGG - chr8_4:4382139-4382158 None:intergenic 35.0%
! TACTCCATCTGTTTGAAGTT+GGG - chr8_4:4382138-4382157 None:intergenic 35.0%
! TTACTCCATCTGTTTGAAGT+TGG - chr8_4:4382139-4382158 None:intergenic 35.0%
! TTTTTCTGTCTATGTCCTAG+TGG - chr8_4:4382400-4382419 None:intergenic 35.0%
ACAAATGCTAACATGTGATC+TGG + chr8_4:4382487-4382506 Msa1308170:intron 35.0%
! TCCCAAATTATATGTCGCTT+TGG - chr8_4:4382799-4382818 None:intergenic 35.0%
AAGCGACATATAATTTGGGA+CGG + chr8_4:4382799-4382818 Msa1308170:intron 35.0%
GTTAACTCTCTGATTCTTAG+AGG + chr8_4:4382941-4382960 Msa1308170:intron 35.0%
ATTCTTAGAGGAAAAGACTC+TGG + chr8_4:4382953-4382972 Msa1308170:intron 35.0%
AGGAAAAGACTCTGGTAATT+CGG + chr8_4:4382961-4382980 Msa1308170:intron 35.0%
TTCACCTATATGTCAAACTC+AGG + chr8_4:4383024-4383043 Msa1308170:intron 35.0%
AGAACCTGAGTTTGACATAT+AGG - chr8_4:4383031-4383050 None:intergenic 35.0%
AGCTAAATCACTAGGTTAAC+TGG + chr8_4:4383092-4383111 Msa1308170:intron 35.0%
TTCCTTAACATATGCCTTTG+AGG + chr8_4:4383425-4383444 Msa1308170:intron 35.0%
TCCTTAACATATGCCTTTGA+GGG + chr8_4:4383426-4383445 Msa1308170:intron 35.0%
CTGGTGAAAATTATAAAGGG+AGG - chr8_4:4383554-4383573 None:intergenic 35.0%
! CTCCCTTTATAATTTTCACC+AGG + chr8_4:4383552-4383571 Msa1308170:intron 35.0%
!! CATTATTTTGCAGGGAGTTA+TGG + chr8_4:4383829-4383848 Msa1308170:intron 35.0%
CTTCATGAGGAAATATACGT+TGG + chr8_4:4383968-4383987 Msa1308170:CDS 35.0%
ATGAGGAAATATACGTTGGA+AGG + chr8_4:4383972-4383991 Msa1308170:CDS 35.0%
TATAGCTTGATAGGTGCAAT+TGG + chr8_4:4384116-4384135 Msa1308170:intron 35.0%
ATCTATGGTTAATGAGACAG+AGG + chr8_4:4384217-4384236 Msa1308170:CDS 35.0%
!!! TAAGCATCGAGTGTTTTTTG+AGG + chr8_4:4379901-4379920 Msa1308170:five_prime_UTR 35.0%
!! TTTTGAGGAAGAAAAGATGG+GGG + chr8_4:4379916-4379935 Msa1308170:exon 35.0%
TTGATACAGTTCATACTTGC+AGG + chr8_4:4379983-4380002 Msa1308170:CDS 35.0%
GGTATACTACAAATACCCTT+GGG - chr8_4:4380051-4380070 None:intergenic 35.0%
GTTCCTCTTGCTTATTTATC+AGG + chr8_4:4380097-4380116 Msa1308170:CDS 35.0%
TACCCTGATAAATAAGCAAG+AGG - chr8_4:4380103-4380122 None:intergenic 35.0%
!! CATTTTGACAGGAGAAATTC+TGG + chr8_4:4380195-4380214 Msa1308170:intron 35.0%
TAGTGAGGTGATGAATAACA+AGG - chr8_4:4380250-4380269 None:intergenic 35.0%
TTTGTAATAGCAGCCTTAGT+AGG + chr8_4:4380994-4381013 Msa1308170:CDS 35.0%
TTGTAATAGCAGCCTTAGTA+GGG + chr8_4:4380995-4381014 Msa1308170:CDS 35.0%
GACTAGTAATTACCCTACTA+AGG - chr8_4:4381010-4381029 None:intergenic 35.0%
GAGAACTATAGCCAAAATAG+TGG + chr8_4:4381128-4381147 Msa1308170:CDS 35.0%
! GGCAATTTTTCTCATTTTGC+AGG + chr8_4:4381320-4381339 Msa1308170:CDS 35.0%
ATCGATACTCTGACATCAAA+AGG + chr8_4:4381350-4381369 Msa1308170:intron 35.0%
ACACGTCATATAACTTGAGA+CGG - chr8_4:4381683-4381702 None:intergenic 35.0%
!!! ATATGTCGTTTTTTTGGTGG+CGG - chr8_4:4381990-4382009 None:intergenic 35.0%
!!! ATATGTCGTTTTTTTGGTGG+CGG - chr8_4:4381990-4382009 None:intergenic 35.0%
! TACTCCATCTGTTTGAAGTT+GGG - chr8_4:4382138-4382157 None:intergenic 35.0%
! TTACTCCATCTGTTTGAAGT+TGG - chr8_4:4382139-4382158 None:intergenic 35.0%
! TACTCCATCTGTTTGAAGTT+GGG - chr8_4:4382138-4382157 None:intergenic 35.0%
! TTACTCCATCTGTTTGAAGT+TGG - chr8_4:4382139-4382158 None:intergenic 35.0%
! TTTTTCTGTCTATGTCCTAG+TGG - chr8_4:4382400-4382419 None:intergenic 35.0%
ACAAATGCTAACATGTGATC+TGG + chr8_4:4382487-4382506 Msa1308170:intron 35.0%
! TCCCAAATTATATGTCGCTT+TGG - chr8_4:4382799-4382818 None:intergenic 35.0%
AAGCGACATATAATTTGGGA+CGG + chr8_4:4382799-4382818 Msa1308170:intron 35.0%
GTTAACTCTCTGATTCTTAG+AGG + chr8_4:4382941-4382960 Msa1308170:intron 35.0%
ATTCTTAGAGGAAAAGACTC+TGG + chr8_4:4382953-4382972 Msa1308170:intron 35.0%
AGGAAAAGACTCTGGTAATT+CGG + chr8_4:4382961-4382980 Msa1308170:intron 35.0%
TTCACCTATATGTCAAACTC+AGG + chr8_4:4383024-4383043 Msa1308170:intron 35.0%
AGAACCTGAGTTTGACATAT+AGG - chr8_4:4383031-4383050 None:intergenic 35.0%
AGCTAAATCACTAGGTTAAC+TGG + chr8_4:4383092-4383111 Msa1308170:intron 35.0%
TTCCTTAACATATGCCTTTG+AGG + chr8_4:4383425-4383444 Msa1308170:intron 35.0%
TCCTTAACATATGCCTTTGA+GGG + chr8_4:4383426-4383445 Msa1308170:intron 35.0%
CTGGTGAAAATTATAAAGGG+AGG - chr8_4:4383554-4383573 None:intergenic 35.0%
! CTCCCTTTATAATTTTCACC+AGG + chr8_4:4383552-4383571 Msa1308170:intron 35.0%
!! CATTATTTTGCAGGGAGTTA+TGG + chr8_4:4383829-4383848 Msa1308170:intron 35.0%
CTTCATGAGGAAATATACGT+TGG + chr8_4:4383968-4383987 Msa1308170:CDS 35.0%
ATGAGGAAATATACGTTGGA+AGG + chr8_4:4383972-4383991 Msa1308170:CDS 35.0%
TATAGCTTGATAGGTGCAAT+TGG + chr8_4:4384116-4384135 Msa1308170:intron 35.0%
ATCTATGGTTAATGAGACAG+AGG + chr8_4:4384217-4384236 Msa1308170:CDS 35.0%
TTTGAGGAAGAAAAGATGGG+GGG + chr8_4:4379917-4379936 Msa1308170:exon 40.0%
! ACAAGAATGGCACTTTTGGA+GGG + chr8_4:4380019-4380038 Msa1308170:CDS 40.0%
CGGTATACTACAAATACCCT+TGG - chr8_4:4380052-4380071 None:intergenic 40.0%
! AGGGTATTTGTAGTATACCG+TGG + chr8_4:4380052-4380071 Msa1308170:CDS 40.0%
AGCAAGAGGAACAAGAACAA+TGG - chr8_4:4380089-4380108 None:intergenic 40.0%
GGAAACAAACCCAATTAGTG+AGG - chr8_4:4380265-4380284 None:intergenic 40.0%
CTACTGTATTTGGGCTGATT+TGG + chr8_4:4380433-4380452 Msa1308170:intron 40.0%
ATGCTCGCTTTATAGACACA+CGG + chr8_4:4380761-4380780 Msa1308170:intron 40.0%
TGCTGGAAGAAGATTGGAAA+TGG - chr8_4:4380968-4380987 None:intergenic 40.0%
GCTATTACAAATGTGACTGC+TGG - chr8_4:4380985-4381004 None:intergenic 40.0%
!! GTGGCCATGATTGATTTTGA+AGG - chr8_4:4381234-4381253 None:intergenic 40.0%
AGTGATGAGAATTGGTTGCT+TGG + chr8_4:4381264-4381283 Msa1308170:CDS 40.0%
TTCTTGGATGCATTGTTGCT+TGG + chr8_4:4381298-4381317 Msa1308170:CDS 40.0%
! TCTTGGATGCATTGTTGCTT+GGG + chr8_4:4381299-4381318 Msa1308170:CDS 40.0%
AAGACCCAACTTCAAACAGA+TGG + chr8_4:4382131-4382150 Msa1308170:intron 40.0%
AAGACCCAACTTCAAACAGA+TGG + chr8_4:4382131-4382150 Msa1308170:intron 40.0%
GTCAGTCTATACTTACCTCA+CGG - chr8_4:4382994-4383013 None:intergenic 40.0%
AACAAAAGGATGAGTCGTTC+AGG - chr8_4:4383054-4383073 None:intergenic 40.0%
ACCAGATGAGCTAAATCACT+AGG + chr8_4:4383084-4383103 Msa1308170:intron 40.0%
! ACCTAGTGATTTAGCTCATC+TGG - chr8_4:4383088-4383107 None:intergenic 40.0%
!! CTCTACTAGCTCTACACATA+TGG - chr8_4:4383215-4383234 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr8_4:4383294-4383313 Msa1308170:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr8_4:4383295-4383314 Msa1308170:intron 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr8_4:4383312-4383331 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+AGG - chr8_4:4383442-4383461 None:intergenic 40.0%
ATCTTCCATGCATTAAGGTC+TGG - chr8_4:4383676-4383695 None:intergenic 40.0%
TTCAAGCATGGTGCATTTCA+AGG + chr8_4:4383873-4383892 Msa1308170:CDS 40.0%
GTAAACATAGCAGAGAAGAG+AGG - chr8_4:4383905-4383924 None:intergenic 40.0%
GTAGAGTCATCTGGTAAAAG+AGG - chr8_4:4384266-4384285 None:intergenic 40.0%
TTTGAGGAAGAAAAGATGGG+GGG + chr8_4:4379917-4379936 Msa1308170:exon 40.0%
! ACAAGAATGGCACTTTTGGA+GGG + chr8_4:4380019-4380038 Msa1308170:CDS 40.0%
CGGTATACTACAAATACCCT+TGG - chr8_4:4380052-4380071 None:intergenic 40.0%
! AGGGTATTTGTAGTATACCG+TGG + chr8_4:4380052-4380071 Msa1308170:CDS 40.0%
AGCAAGAGGAACAAGAACAA+TGG - chr8_4:4380089-4380108 None:intergenic 40.0%
GGAAACAAACCCAATTAGTG+AGG - chr8_4:4380265-4380284 None:intergenic 40.0%
CTACTGTATTTGGGCTGATT+TGG + chr8_4:4380433-4380452 Msa1308170:intron 40.0%
ATGCTCGCTTTATAGACACA+CGG + chr8_4:4380761-4380780 Msa1308170:intron 40.0%
TGCTGGAAGAAGATTGGAAA+TGG - chr8_4:4380968-4380987 None:intergenic 40.0%
GCTATTACAAATGTGACTGC+TGG - chr8_4:4380985-4381004 None:intergenic 40.0%
!! GTGGCCATGATTGATTTTGA+AGG - chr8_4:4381234-4381253 None:intergenic 40.0%
AGTGATGAGAATTGGTTGCT+TGG + chr8_4:4381264-4381283 Msa1308170:CDS 40.0%
TTCTTGGATGCATTGTTGCT+TGG + chr8_4:4381298-4381317 Msa1308170:CDS 40.0%
! TCTTGGATGCATTGTTGCTT+GGG + chr8_4:4381299-4381318 Msa1308170:CDS 40.0%
AAGACCCAACTTCAAACAGA+TGG + chr8_4:4382131-4382150 Msa1308170:intron 40.0%
AAGACCCAACTTCAAACAGA+TGG + chr8_4:4382131-4382150 Msa1308170:intron 40.0%
GTCAGTCTATACTTACCTCA+CGG - chr8_4:4382994-4383013 None:intergenic 40.0%
AACAAAAGGATGAGTCGTTC+AGG - chr8_4:4383054-4383073 None:intergenic 40.0%
ACCAGATGAGCTAAATCACT+AGG + chr8_4:4383084-4383103 Msa1308170:intron 40.0%
! ACCTAGTGATTTAGCTCATC+TGG - chr8_4:4383088-4383107 None:intergenic 40.0%
!! CTCTACTAGCTCTACACATA+TGG - chr8_4:4383215-4383234 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr8_4:4383294-4383313 Msa1308170:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr8_4:4383295-4383314 Msa1308170:intron 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr8_4:4383312-4383331 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+AGG - chr8_4:4383442-4383461 None:intergenic 40.0%
ATCTTCCATGCATTAAGGTC+TGG - chr8_4:4383676-4383695 None:intergenic 40.0%
TTCAAGCATGGTGCATTTCA+AGG + chr8_4:4383873-4383892 Msa1308170:CDS 40.0%
GTAAACATAGCAGAGAAGAG+AGG - chr8_4:4383905-4383924 None:intergenic 40.0%
GTAGAGTCATCTGGTAAAAG+AGG - chr8_4:4384266-4384285 None:intergenic 40.0%
ATACTTGCAGGTCAGACTCT+TGG + chr8_4:4379995-4380014 Msa1308170:CDS 45.0%
TCAGACTCTTGGCACAAGAA+TGG + chr8_4:4380006-4380025 Msa1308170:CDS 45.0%
! TGGCACAAGAATGGCACTTT+TGG + chr8_4:4380015-4380034 Msa1308170:CDS 45.0%
! CACAAGAATGGCACTTTTGG+AGG + chr8_4:4380018-4380037 Msa1308170:CDS 45.0%
!! CAATGGTTGCAAAAGCACCA+CGG - chr8_4:4380072-4380091 None:intergenic 45.0%
TGTGACTGCTGGAAGAAGAT+TGG - chr8_4:4380974-4380993 None:intergenic 45.0%
ATCAATCATGGCCACAACCT+TGG + chr8_4:4381239-4381258 Msa1308170:CDS 45.0%
TCAATCATGGCCACAACCTT+GGG + chr8_4:4381240-4381259 Msa1308170:CDS 45.0%
CCAATTCTCATCACTTCCCA+AGG - chr8_4:4381259-4381278 None:intergenic 45.0%
CCTTGGGAAGTGATGAGAAT+TGG + chr8_4:4381256-4381275 Msa1308170:CDS 45.0%
CTTGGATGTCTGTCTCTTCT+TGG + chr8_4:4381282-4381301 Msa1308170:CDS 45.0%
ATAACTTGAGACGGAGTGAG+TGG - chr8_4:4381674-4381693 None:intergenic 45.0%
!! ATGGCTTCTCAATGATGGGT+GGG - chr8_4:4382192-4382211 None:intergenic 45.0%
! AATGGCTTCTCAATGATGGG+TGG - chr8_4:4382193-4382212 None:intergenic 45.0%
!! TGGCTTCTCAAATGATGGGT+GGG - chr8_4:4382362-4382381 None:intergenic 45.0%
! ATGGCTTCTCAAATGATGGG+TGG - chr8_4:4382363-4382382 None:intergenic 45.0%
! CGACATATAATTTGGGACGG+AGG + chr8_4:4382802-4382821 Msa1308170:intron 45.0%
GACTCTGGTAATTCGGAGTT+CGG + chr8_4:4382968-4382987 Msa1308170:intron 45.0%
GTTCCTTAACATGTGCCCTT+AGG - chr8_4:4383313-4383332 None:intergenic 45.0%
! GCCCTCAAAGGCATATGTTA+AGG - chr8_4:4383430-4383449 None:intergenic 45.0%
! TTGGGATGACTTGCATAAGC+TGG - chr8_4:4383580-4383599 None:intergenic 45.0%
TAGAGCCAGACCTTAATGCA+TGG + chr8_4:4383668-4383687 Msa1308170:CDS 45.0%
! AGCGCTACCAAGTTGAAGTA+GGG - chr8_4:4383704-4383723 None:intergenic 45.0%
AGCGCTGTATATGCTGTATG+TGG + chr8_4:4383718-4383737 Msa1308170:intron 45.0%
GGTGCAATTGGAGTGATCAT+TGG + chr8_4:4384128-4384147 Msa1308170:CDS 45.0%
ATACTTGCAGGTCAGACTCT+TGG + chr8_4:4379995-4380014 Msa1308170:CDS 45.0%
TCAGACTCTTGGCACAAGAA+TGG + chr8_4:4380006-4380025 Msa1308170:CDS 45.0%
! TGGCACAAGAATGGCACTTT+TGG + chr8_4:4380015-4380034 Msa1308170:CDS 45.0%
! CACAAGAATGGCACTTTTGG+AGG + chr8_4:4380018-4380037 Msa1308170:CDS 45.0%
!! CAATGGTTGCAAAAGCACCA+CGG - chr8_4:4380072-4380091 None:intergenic 45.0%
TGTGACTGCTGGAAGAAGAT+TGG - chr8_4:4380974-4380993 None:intergenic 45.0%
ATCAATCATGGCCACAACCT+TGG + chr8_4:4381239-4381258 Msa1308170:CDS 45.0%
TCAATCATGGCCACAACCTT+GGG + chr8_4:4381240-4381259 Msa1308170:CDS 45.0%
CCAATTCTCATCACTTCCCA+AGG - chr8_4:4381259-4381278 None:intergenic 45.0%
CCTTGGGAAGTGATGAGAAT+TGG + chr8_4:4381256-4381275 Msa1308170:CDS 45.0%
CTTGGATGTCTGTCTCTTCT+TGG + chr8_4:4381282-4381301 Msa1308170:CDS 45.0%
ATAACTTGAGACGGAGTGAG+TGG - chr8_4:4381674-4381693 None:intergenic 45.0%
!! ATGGCTTCTCAATGATGGGT+GGG - chr8_4:4382192-4382211 None:intergenic 45.0%
! AATGGCTTCTCAATGATGGG+TGG - chr8_4:4382193-4382212 None:intergenic 45.0%
!! TGGCTTCTCAAATGATGGGT+GGG - chr8_4:4382362-4382381 None:intergenic 45.0%
! ATGGCTTCTCAAATGATGGG+TGG - chr8_4:4382363-4382382 None:intergenic 45.0%
! CGACATATAATTTGGGACGG+AGG + chr8_4:4382802-4382821 Msa1308170:intron 45.0%
GACTCTGGTAATTCGGAGTT+CGG + chr8_4:4382968-4382987 Msa1308170:intron 45.0%
GTTCCTTAACATGTGCCCTT+AGG - chr8_4:4383313-4383332 None:intergenic 45.0%
! GCCCTCAAAGGCATATGTTA+AGG - chr8_4:4383430-4383449 None:intergenic 45.0%
! TTGGGATGACTTGCATAAGC+TGG - chr8_4:4383580-4383599 None:intergenic 45.0%
TAGAGCCAGACCTTAATGCA+TGG + chr8_4:4383668-4383687 Msa1308170:CDS 45.0%
! AGCGCTACCAAGTTGAAGTA+GGG - chr8_4:4383704-4383723 None:intergenic 45.0%
AGCGCTGTATATGCTGTATG+TGG + chr8_4:4383718-4383737 Msa1308170:intron 45.0%
GGTGCAATTGGAGTGATCAT+TGG + chr8_4:4384128-4384147 Msa1308170:CDS 45.0%
!! ATTAATTAAATAATTGAAAA+AGG + chr8_4:4381806-4381825 Msa1308170:intron 5.0%
!! AAATAACATTAATAATTTAT+TGG + chr8_4:4381862-4381881 Msa1308170:intron 5.0%
!! ATTAATTAAATAATTGAAAA+AGG + chr8_4:4381806-4381825 Msa1308170:intron 5.0%
!! AAATAACATTAATAATTTAT+TGG + chr8_4:4381862-4381881 Msa1308170:intron 5.0%
GATGGGGGGAGGTTTAAACA+TGG + chr8_4:4379931-4379950 Msa1308170:exon 50.0%
!! TTTTGGAGGGTATGAGCCCA+AGG + chr8_4:4380032-4380051 Msa1308170:CDS 50.0%
! TTTGGAGGGTATGAGCCCAA+GGG + chr8_4:4380033-4380052 Msa1308170:CDS 50.0%
CTCATCACTTCCCAAGGTTG+TGG - chr8_4:4381253-4381272 None:intergenic 50.0%
!!! TCGTTTTTTTGGTGGCGGCT+GGG - chr8_4:4381985-4382004 None:intergenic 50.0%
! ATTTTCCGGGGTTCGAATCC+CGG + chr8_4:4382011-4382030 Msa1308170:intron 50.0%
!! TGGCTTCTCAATGATGGGTG+GGG - chr8_4:4382191-4382210 None:intergenic 50.0%
!! GGCTTCTCAAATGATGGGTG+GGG - chr8_4:4382361-4382380 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr8_4:4383307-4383326 Msa1308170:intron 50.0%
GACTTGCATAAGCTGGAACC+TGG - chr8_4:4383573-4383592 None:intergenic 50.0%
! CAGCGCTACCAAGTTGAAGT+AGG - chr8_4:4383705-4383724 None:intergenic 50.0%
GCATGGTGCATTTCAAGGAG+AGG + chr8_4:4383878-4383897 Msa1308170:CDS 50.0%
!!! GGCTGCCATTTTGCTTCATG+AGG + chr8_4:4383955-4383974 Msa1308170:CDS 50.0%
GATGGGGGGAGGTTTAAACA+TGG + chr8_4:4379931-4379950 Msa1308170:exon 50.0%
!! TTTTGGAGGGTATGAGCCCA+AGG + chr8_4:4380032-4380051 Msa1308170:CDS 50.0%
! TTTGGAGGGTATGAGCCCAA+GGG + chr8_4:4380033-4380052 Msa1308170:CDS 50.0%
CTCATCACTTCCCAAGGTTG+TGG - chr8_4:4381253-4381272 None:intergenic 50.0%
!!! TCGTTTTTTTGGTGGCGGCT+GGG - chr8_4:4381985-4382004 None:intergenic 50.0%
! ATTTTCCGGGGTTCGAATCC+CGG + chr8_4:4382011-4382030 Msa1308170:intron 50.0%
!! TGGCTTCTCAATGATGGGTG+GGG - chr8_4:4382191-4382210 None:intergenic 50.0%
!! GGCTTCTCAAATGATGGGTG+GGG - chr8_4:4382361-4382380 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr8_4:4383307-4383326 Msa1308170:intron 50.0%
GACTTGCATAAGCTGGAACC+TGG - chr8_4:4383573-4383592 None:intergenic 50.0%
! CAGCGCTACCAAGTTGAAGT+AGG - chr8_4:4383705-4383724 None:intergenic 50.0%
GCATGGTGCATTTCAAGGAG+AGG + chr8_4:4383878-4383897 Msa1308170:CDS 50.0%
!!! GGCTGCCATTTTGCTTCATG+AGG + chr8_4:4383955-4383974 Msa1308170:CDS 50.0%
GAGGAAGAAAAGATGGGGGG+AGG + chr8_4:4379920-4379939 Msa1308170:exon 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr8_4:4381913-4381932 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr8_4:4381910-4381929 Msa1308170:intron 55.0%
!!! GTCGTTTTTTTGGTGGCGGC+TGG - chr8_4:4381986-4382005 None:intergenic 55.0%
!!! TCGTTTTTTTGGTGGCGGCC+GGG - chr8_4:4382032-4382051 None:intergenic 55.0%
!!! GTCGTTTTTTTGGTGGCGGC+CGG - chr8_4:4381986-4382005 None:intergenic 55.0%
TAATTCGGAGTTCGGCCGTG+AGG + chr8_4:4382976-4382995 Msa1308170:intron 55.0%
GAGGAAGAAAAGATGGGGGG+AGG + chr8_4:4379920-4379939 Msa1308170:exon 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr8_4:4381913-4381932 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr8_4:4381910-4381929 Msa1308170:intron 55.0%
!!! GTCGTTTTTTTGGTGGCGGC+TGG - chr8_4:4381986-4382005 None:intergenic 55.0%
!!! TCGTTTTTTTGGTGGCGGCC+GGG - chr8_4:4382032-4382051 None:intergenic 55.0%
!!! GTCGTTTTTTTGGTGGCGGC+CGG - chr8_4:4381986-4382005 None:intergenic 55.0%
TAATTCGGAGTTCGGCCGTG+AGG + chr8_4:4382976-4382995 Msa1308170:intron 55.0%
GGCGGCTGGGATTCGAACCC+CGG - chr8_4:4381972-4381991 None:intergenic 70.0%
GGCGGCTGGGATTCGAACCC+CGG - chr8_4:4381972-4381991 None:intergenic 70.0%
GGCGGCCGGGATTCGAACCC+CGG - chr8_4:4382019-4382038 None:intergenic 75.0%
GGCGGCCGGGATTCGAACCC+CGG - chr8_4:4382019-4382038 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 4379879 4384555 4379879 ID=Msa1308170;Name=Msa1308170
chr8_4 mRNA 4379879 4384555 4379879 ID=Msa1308170-mRNA-1;Parent=Msa1308170;Name=Msa1308170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=53|1|1|1|1|1|7|266|364
chr8_4 exon 4379879 4380119 4379879 ID=Msa1308170-mRNA-1:exon:1292;Parent=Msa1308170-mRNA-1
chr8_4 exon 4380206 4380274 4380206 ID=Msa1308170-mRNA-1:exon:1293;Parent=Msa1308170-mRNA-1
chr8_4 exon 4380900 4381016 4380900 ID=Msa1308170-mRNA-1:exon:1294;Parent=Msa1308170-mRNA-1
chr8_4 exon 4381101 4381341 4381101 ID=Msa1308170-mRNA-1:exon:1295;Parent=Msa1308170-mRNA-1
chr8_4 exon 4383574 4383732 4383574 ID=Msa1308170-mRNA-1:exon:1296;Parent=Msa1308170-mRNA-1
chr8_4 exon 4383842 4383993 4383842 ID=Msa1308170-mRNA-1:exon:1297;Parent=Msa1308170-mRNA-1
chr8_4 exon 4384121 4384555 4384121 ID=Msa1308170-mRNA-1:exon:1298;Parent=Msa1308170-mRNA-1
chr8_4 five_prime_UTR 4379879 4379931 4379879 ID=Msa1308170-mRNA-1:five_prime_utr;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4379932 4380119 4379932 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4380206 4380274 4380206 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4380900 4381016 4380900 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4381101 4381341 4381101 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4383574 4383732 4383574 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4383842 4383993 4383842 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 CDS 4384121 4384289 4384121 ID=Msa1308170-mRNA-1:cds;Parent=Msa1308170-mRNA-1
chr8_4 three_prime_UTR 4384290 4384555 4384290 ID=Msa1308170-mRNA-1:three_prime_utr;Parent=Msa1308170-mRNA-1
Gene Sequence

>Msa1308170

ATGGGGGGAGGTTTAAACATGGAGTACTACCTACCAATAATAGTTATGTTGTTGATACAGTTCATACTTGCAGGTCAGACTCTTGGCACAAGAATGGCACTTTTGGAGGGTATGAGCCCAAGGGTATTTGTAGTATACCGTGGTGCTTTTGCAACCATTGTTCTTGTTCCTCTTGCTTATTTATCAGGGAGAAATTCTGGCTCTTATTCCTTAAATTTAAGGAGTTTTTCCTTGTTATTCATCACCTCACTAATTGGCATTACATTGAATCAAAATTTATATTTTGAGGGTCTATATCTTTCTTCTTCTTCAGCTGCAAGTGCCATTTCCAATCTTCTTCCAGCAGTCACATTTGTAATAGCAGCCTTAGTAGGAATGGAGAAAATGAATATTCGAAGTATGAGAACTATAGCCAAAATAGTGGGAACAATTATATGTGTAAGTGGAGCAGTATCTATTGCATTGTTGAAGGGTCCAAAGCTACTAAATGCAGAATACGAATTACCTTCAAAATCAATCATGGCCACAACCTTGGGAAGTGATGAGAATTGGTTGCTTGGATGTCTGTCTCTTCTTGGATGCATTGTTGCTTGGGCAATTTTTCTCATTTTGCAGGTTCCAGCTTATGCAAGTCATCCCAATTACATATCACTTTGTGCATGGATGTGTTTCATGTCAACATTACAATCAGCATTAGTGACACTATTCTTAGAGCCAGACCTTAATGCATGGAAGATTAATTCCCTACTTCAACTTGGTAGCGCTGTATATGCTGGAGTTATGGGATCTGCAGTAATATACTGTCTTCAAGCATGGTGCATTTCAAGGAGAGGACCTCTCTTCTCTGCTATGTTTACTCCTGTTTTCACAATAATTTGTACTGTATTGGCTGCCATTTTGCTTCATGAGGAAATATACGTTGGAAGCTTGATAGGTGCAATTGGAGTGATCATTGGTTTGTATATTGTACTTTGGGGTAAAGCTGAAGAAGTAGTTGATGTTAAAGAGAAGATAGTTCCAAAATCTATGGTTAATGAGACAGAGGAAGTGAAAATTGATTTGGAAGAACCTCTTTTACCAGATGACTCTACTTAG
Protein sequence

>Msa1308170

MGGGLNMEYYLPIIVMLLIQFILAGQTLGTRMALLEGMSPRVFVVYRGAFATIVLVPLAYLSGRNSGSYSLNLRSFSLLFITSLIGITLNQNLYFEGLYLSSSSAASAISNLLPAVTFVIAALVGMEKMNIRSMRTIAKIVGTIICVSGAVSIALLKGPKLLNAEYELPSKSIMATTLGSDENWLLGCLSLLGCIVAWAIFLILQVPAYASHPNYISLCAWMCFMSTLQSALVTLFLEPDLNAWKINSLLQLGSAVYAGVMGSAVIYCLQAWCISRRGPLFSAMFTPVFTIICTVLAAILLHEEIYVGSLIGAIGVIIGLYIVLWGKAEEVVDVKEKIVPKSMVNETEEVKIDLEEPLLPDDST*