Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311230 | XP_003626874.1 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 3.38e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311230 | G7LEC6 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 1.61e-113 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184780 | Msa1311230 | 0.814300 | 1.652341e-51 | -8.615850e-47 |
| Msa0477080 | Msa1311230 | 0.807779 | 4.277988e-50 | -8.615850e-47 |
| Msa0352330 | Msa1311230 | 0.800892 | 1.164201e-48 | -8.615850e-47 |
| Msa1182880 | Msa1311230 | 0.924870 | 3.946792e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311230 | MtrunA17_Chr8g0338581 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 3.11e-117 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311230 | AT4G00695.4 | 50.485 | 103 | 49 | 2 | 24 | 124 | 12 | 114 | 3.75e-26 | 97.8 |
| Msa1311230 | AT4G00695.3 | 50.485 | 103 | 49 | 2 | 24 | 124 | 12 | 114 | 3.75e-26 | 97.8 |
| Msa1311230 | AT1G80245.2 | 50.000 | 102 | 50 | 1 | 24 | 124 | 12 | 113 | 4.97e-26 | 96.7 |
| Msa1311230 | AT1G80245.7 | 50.000 | 102 | 50 | 1 | 24 | 124 | 12 | 113 | 4.97e-26 | 96.7 |
| Msa1311230 | AT1G80245.1 | 50.000 | 102 | 50 | 1 | 24 | 124 | 12 | 113 | 4.97e-26 | 96.7 |
| Msa1311230 | AT1G80245.3 | 50.000 | 102 | 50 | 1 | 24 | 124 | 12 | 113 | 4.97e-26 | 96.7 |
| Msa1311230 | AT4G00695.1 | 50.485 | 103 | 49 | 2 | 24 | 124 | 12 | 114 | 5.16e-26 | 96.7 |
| Msa1311230 | AT4G00695.2 | 50.485 | 103 | 49 | 2 | 24 | 124 | 12 | 114 | 5.16e-26 | 96.7 |
| Msa1311230 | AT4G00695.5 | 50.485 | 103 | 49 | 2 | 24 | 124 | 12 | 114 | 5.16e-26 | 96.7 |
Find 51 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGGCGGGACTCGAATTT+AGG | 0.200940 | 8_4:-7933974 | None:intergenic |
| ATGGATAGGTTGTAAGAATT+TGG | 0.227310 | 8_4:+7936327 | Msa1311230:CDS |
| AATCATTGAATTATGAATAA+AGG | 0.269151 | 8_4:+7934319 | Msa1311230:exon |
| TATACATACCCTTGGAGAAT+TGG | 0.327914 | 8_4:-7937453 | None:intergenic |
| GGGAGAGGGTGAACTGTATA+AGG | 0.341805 | 8_4:-7938659 | None:intergenic |
| AGAGGCGGGACTCGAATTTA+GGG | 0.345138 | 8_4:-7933973 | None:intergenic |
| GCAGTAGATTTCACCATATC+TGG | 0.347004 | 8_4:-7937339 | None:intergenic |
| TTTACTGATAGAAGAGAAAA+GGG | 0.348373 | 8_4:-7933908 | None:intergenic |
| TCAATTAAAGCAAAGAGTTC+AGG | 0.349489 | 8_4:+7934292 | Msa1311230:five_prime_UTR |
| CGCATCTCTTGTACCAGATA+TGG | 0.369462 | 8_4:+7937326 | Msa1311230:CDS |
| GTTTAAAATTATTCTCTTCA+AGG | 0.378418 | 8_4:+7938719 | Msa1311230:CDS |
| ATTTGATAGATGTCAATATC+AGG | 0.381970 | 8_4:-7938969 | None:intergenic |
| GAGACTTACAATTTCAGATT+CGG | 0.388675 | 8_4:-7934434 | None:intergenic |
| AGTTACCCGCCTCATCCATT+TGG | 0.398642 | 8_4:+7934012 | Msa1311230:five_prime_UTR |
| TTAGTTACTTCCTATATCAA+TGG | 0.406551 | 8_4:+7938920 | Msa1311230:three_prime_UTR |
| AAATGAATGTCCATTGATAT+AGG | 0.416944 | 8_4:-7938930 | None:intergenic |
| TGCTTCTTTCGTTTGGGAGA+GGG | 0.420868 | 8_4:-7938673 | None:intergenic |
| CAATGGCTCTAAGCATCTTA+AGG | 0.428592 | 8_4:-7936363 | None:intergenic |
| ATGCGTCGACGAACTCCAAA+TGG | 0.438753 | 8_4:-7934027 | None:intergenic |
| AAAAGTCTATAAGAAAAGAT+TGG | 0.454041 | 8_4:+7934342 | Msa1311230:CDS |
| CTTAAGATGCTTAGAGCCAT+TGG | 0.457826 | 8_4:+7936364 | Msa1311230:CDS |
| CATGTGTATATTAGCCAATA+AGG | 0.471832 | 8_4:-7938818 | None:intergenic |
| TTGCTTCTTTCGTTTGGGAG+AGG | 0.474026 | 8_4:-7938674 | None:intergenic |
| AGAAGAGAAAGAAGAAGAGA+TGG | 0.476328 | 8_4:-7933880 | None:intergenic |
| CTAGGGTTCAAGATGTGGAT+TGG | 0.488800 | 8_4:+7934398 | Msa1311230:CDS |
| GAAAATGTTGATAATTAAGC+GGG | 0.490779 | 8_4:+7936300 | Msa1311230:CDS |
| TGAAAATGTTGATAATTAAG+CGG | 0.503682 | 8_4:+7936299 | Msa1311230:CDS |
| TGATAAAATTACTGAGACTA+GGG | 0.512323 | 8_4:+7934381 | Msa1311230:CDS |
| CCTCGTTGTTACAGTTCAGT+AGG | 0.513300 | 8_4:-7937380 | None:intergenic |
| AAAATATAGGCACTTCAGTA+AGG | 0.521267 | 8_4:-7938768 | None:intergenic |
| AGTAGTTTCAGCAAATATGT+TGG | 0.529356 | 8_4:+7938891 | Msa1311230:three_prime_UTR |
| TGAGACTAGGGTTCAAGATG+TGG | 0.532204 | 8_4:+7934393 | Msa1311230:CDS |
| GAGCAACATGTGAGAGAGGC+GGG | 0.540609 | 8_4:-7933987 | None:intergenic |
| GGCACTTCAGTAAGGAGGAT+GGG | 0.551297 | 8_4:-7938760 | None:intergenic |
| TGATAATTAAGCGGGCAGAA+TGG | 0.576973 | 8_4:+7936308 | Msa1311230:CDS |
| GATATACAACCAATTCTCCA+AGG | 0.584555 | 8_4:+7937444 | Msa1311230:CDS |
| CGACGAACTCCAAATGGATG+AGG | 0.587496 | 8_4:-7934021 | None:intergenic |
| AGGCACTTCAGTAAGGAGGA+TGG | 0.587678 | 8_4:-7938761 | None:intergenic |
| ATTAAGCGGGCAGAATGGAT+AGG | 0.595837 | 8_4:+7936313 | Msa1311230:CDS |
| GAAGAGCTAAGTACAAGTGT+TGG | 0.600284 | 8_4:+7937417 | Msa1311230:CDS |
| AAAACTTAGGAATATAAGAG+AGG | 0.600950 | 8_4:+7933931 | Msa1311230:five_prime_UTR |
| GTGATAAAATTACTGAGACT+AGG | 0.604234 | 8_4:+7934380 | Msa1311230:CDS |
| GATGGAAAATCTCAAAGCAG+AGG | 0.605458 | 8_4:+7937296 | Msa1311230:CDS |
| GAACTCCAAATGGATGAGGC+GGG | 0.610948 | 8_4:-7934017 | None:intergenic |
| CGAACTCCAAATGGATGAGG+CGG | 0.624911 | 8_4:-7934018 | None:intergenic |
| CTTAGAGCAACATGTGAGAG+AGG | 0.638024 | 8_4:-7933991 | None:intergenic |
| ATATAGGCACTTCAGTAAGG+AGG | 0.643100 | 8_4:-7938765 | None:intergenic |
| AGAGCAACATGTGAGAGAGG+CGG | 0.649017 | 8_4:-7933988 | None:intergenic |
| ATATACAACCAATTCTCCAA+GGG | 0.656648 | 8_4:+7937445 | Msa1311230:CDS |
| AGAGGGTGAACTGTATAAGG+AGG | 0.665742 | 8_4:-7938656 | None:intergenic |
| CCTACTGAACTGTAACAACG+AGG | 0.770769 | 8_4:+7937380 | Msa1311230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATCTATAACAAA+CGG | - | chr8_4:7937569-7937588 | None:intergenic | 10.0% |
| !!! | TATAATCTCTAAATTATTTT+AGG | - | chr8_4:7937604-7937623 | None:intergenic | 10.0% |
| !!! | AAAAAATAGATTTTTTTTAG+AGG | - | chr8_4:7937788-7937807 | None:intergenic | 10.0% |
| !!! | ATTAAAATAAAAAGCATAAT+TGG | - | chr8_4:7938617-7938636 | None:intergenic | 10.0% |
| !! | TGTAAGTTAACAAATAAAAA+GGG | - | chr8_4:7934253-7934272 | None:intergenic | 15.0% |
| !! | TTGTAAGTTAACAAATAAAA+AGG | - | chr8_4:7934254-7934273 | None:intergenic | 15.0% |
| !! | AATCATTGAATTATGAATAA+AGG | + | chr8_4:7934319-7934338 | Msa1311230:exon | 15.0% |
| !!! | AATATTTTTATGTTCTCTTT+TGG | + | chr8_4:7935967-7935986 | Msa1311230:intron | 15.0% |
| !! | AGTAACTAGTTATTATAAAT+TGG | + | chr8_4:7936087-7936106 | Msa1311230:intron | 15.0% |
| !! | AAGAATAATAAATGTTGTAT+TGG | - | chr8_4:7936521-7936540 | None:intergenic | 15.0% |
| !!! | TTTTATCCATCTATTTTTTA+CGG | + | chr8_4:7936777-7936796 | Msa1311230:intron | 15.0% |
| !! | TAATATTTCATAATGTTCTT+TGG | + | chr8_4:7936908-7936927 | Msa1311230:intron | 15.0% |
| !!! | AGATTTAGAATTGAATTTAA+TGG | + | chr8_4:7937136-7937155 | Msa1311230:intron | 15.0% |
| !!! | TATTTTAATCTATAACAAAC+GGG | - | chr8_4:7937568-7937587 | None:intergenic | 15.0% |
| !!! | AACAAATAATTTAGTTTGTT+TGG | + | chr8_4:7937694-7937713 | Msa1311230:intron | 15.0% |
| !! | TATAAACATTAACATCAATT+GGG | + | chr8_4:7938528-7938547 | Msa1311230:intron | 15.0% |
| !! | TTCTATCAGTAAAAAAACTT+AGG | + | chr8_4:7933918-7933937 | Msa1311230:five_prime_UTR | 20.0% |
| !! | TAAGTTAACAAATAAAAAGG+GGG | - | chr8_4:7934251-7934270 | None:intergenic | 20.0% |
| !! | GTAAGTTAACAAATAAAAAG+GGG | - | chr8_4:7934252-7934271 | None:intergenic | 20.0% |
| !! | AAAAGTCTATAAGAAAAGAT+TGG | + | chr8_4:7934342-7934361 | Msa1311230:CDS | 20.0% |
| !! | ATAAGTTGTTTATCTAAACA+CGG | - | chr8_4:7934712-7934731 | None:intergenic | 20.0% |
| !! | TATCTTATTGAAAATAGCTT+AGG | + | chr8_4:7934867-7934886 | Msa1311230:intron | 20.0% |
| !!! | AGATTTTGAAATTAATGAGT+TGG | + | chr8_4:7935251-7935270 | Msa1311230:intron | 20.0% |
| !! | TTCTATCATAAACCATATTT+CGG | - | chr8_4:7935278-7935297 | None:intergenic | 20.0% |
| !!! | ATAGATTTGCTGTTATATTT+TGG | + | chr8_4:7935831-7935850 | Msa1311230:intron | 20.0% |
| !!! | TAGATTTGCTGTTATATTTT+GGG | + | chr8_4:7935832-7935851 | Msa1311230:intron | 20.0% |
| !!! | TATTGTTATTTCATGTTTTG+AGG | + | chr8_4:7935892-7935911 | Msa1311230:intron | 20.0% |
| !! | CTAGTTATTATAAATTGGTT+TGG | + | chr8_4:7936092-7936111 | Msa1311230:intron | 20.0% |
| !!! | CTAATTTTTTGTTTTCATCT+TGG | + | chr8_4:7936206-7936225 | Msa1311230:intron | 20.0% |
| !!! | TGAAAATGTTGATAATTAAG+CGG | + | chr8_4:7936299-7936318 | Msa1311230:CDS | 20.0% |
| !! | TCCACTAACTATAATTAATA+AGG | + | chr8_4:7936589-7936608 | Msa1311230:intron | 20.0% |
| !! | CCACTAACTATAATTAATAA+GGG | + | chr8_4:7936590-7936609 | Msa1311230:intron | 20.0% |
| !!! | ATTAATAGTGTTGATTTCAA+TGG | - | chr8_4:7936642-7936661 | None:intergenic | 20.0% |
| !! | ACTATTAGCTAGATAATATA+TGG | + | chr8_4:7937207-7937226 | Msa1311230:intron | 20.0% |
| !! | GATATTGTATATTGTCTTAT+TGG | + | chr8_4:7937527-7937546 | Msa1311230:intron | 20.0% |
| !!! | TTTTTAAAAGCTGTAACAAA+CGG | + | chr8_4:7937873-7937892 | Msa1311230:intron | 20.0% |
| !! | CTATAAACATTAACATCAAT+TGG | + | chr8_4:7938527-7938546 | Msa1311230:intron | 20.0% |
| !! | ATAAACATTAACATCAATTG+GGG | + | chr8_4:7938529-7938548 | Msa1311230:intron | 20.0% |
| !!! | GTTTAAAATTATTCTCTTCA+AGG | + | chr8_4:7938719-7938738 | Msa1311230:CDS | 20.0% |
| ! | TTTACTGATAGAAGAGAAAA+GGG | - | chr8_4:7933911-7933930 | None:intergenic | 25.0% |
| !! | TTTTACTGATAGAAGAGAAA+AGG | - | chr8_4:7933912-7933931 | None:intergenic | 25.0% |
| ! | AAAACTTAGGAATATAAGAG+AGG | + | chr8_4:7933931-7933950 | Msa1311230:five_prime_UTR | 25.0% |
| !! | AATGTCTAATTTTCAGTTGT+GGG | - | chr8_4:7934184-7934203 | None:intergenic | 25.0% |
| !! | AAATGTCTAATTTTCAGTTG+TGG | - | chr8_4:7934185-7934204 | None:intergenic | 25.0% |
| !! | AAGATTGGAAACTTTTATTG+AGG | + | chr8_4:7934357-7934376 | Msa1311230:CDS | 25.0% |
| !! | AGATTGGAAACTTTTATTGA+GGG | + | chr8_4:7934358-7934377 | Msa1311230:CDS | 25.0% |
| ! | TGATAAAATTACTGAGACTA+GGG | + | chr8_4:7934381-7934400 | Msa1311230:CDS | 25.0% |
| ! | ACAGCTTATTCATATTTCAT+AGG | - | chr8_4:7934772-7934791 | None:intergenic | 25.0% |
| ! | TGCTAGAAAATTCATTAGTA+TGG | + | chr8_4:7935008-7935027 | Msa1311230:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+TGG | + | chr8_4:7935055-7935074 | Msa1311230:intron | 25.0% |
| ! | ATGACAATATTAGAGAGTTT+GGG | + | chr8_4:7935056-7935075 | Msa1311230:intron | 25.0% |
| ! | AAACTAGAAGAGAAACTATT+AGG | + | chr8_4:7935226-7935245 | Msa1311230:intron | 25.0% |
| ! | TGGTTTATGATAGAATTTGA+TGG | + | chr8_4:7935283-7935302 | Msa1311230:intron | 25.0% |
| ! | TTGTAATCTAGAAGTAATGA+AGG | + | chr8_4:7935394-7935413 | Msa1311230:intron | 25.0% |
| ! | TGTAATCTAGAAGTAATGAA+GGG | + | chr8_4:7935395-7935414 | Msa1311230:intron | 25.0% |
| ! | CAAAATTATCAGTAGAACAT+TGG | - | chr8_4:7935459-7935478 | None:intergenic | 25.0% |
| !! | TGTATGTTTTGTGAATATCA+AGG | + | chr8_4:7935507-7935526 | Msa1311230:intron | 25.0% |
| ! | TTGGGATAAAATTGCATATA+TGG | + | chr8_4:7935850-7935869 | Msa1311230:intron | 25.0% |
| ! | GATAAAATTGCATATATGGA+TGG | + | chr8_4:7935854-7935873 | Msa1311230:intron | 25.0% |
| ! | TTTATAAACGAGAAGAGAAT+AGG | - | chr8_4:7936030-7936049 | None:intergenic | 25.0% |
| !!! | GAAAATGTTGATAATTAAGC+GGG | + | chr8_4:7936300-7936319 | Msa1311230:CDS | 25.0% |
| ! | GACAAAGAAGTTTATAAAAG+AGG | - | chr8_4:7936472-7936491 | None:intergenic | 25.0% |
| !! | GTTGTATTGGTATTGTAAAA+GGG | - | chr8_4:7936508-7936527 | None:intergenic | 25.0% |
| !! | TGTTGTATTGGTATTGTAAA+AGG | - | chr8_4:7936509-7936528 | None:intergenic | 25.0% |
| ! | CCCTTATTAATTATAGTTAG+TGG | - | chr8_4:7936593-7936612 | None:intergenic | 25.0% |
| !! | GAGTATAATGGTATTTTGTT+TGG | + | chr8_4:7936712-7936731 | Msa1311230:intron | 25.0% |
| ! | AATCAATTCTTGAAGTACAT+GGG | - | chr8_4:7936884-7936903 | None:intergenic | 25.0% |
| ! | TAATCAATTCTTGAAGTACA+TGG | - | chr8_4:7936885-7936904 | None:intergenic | 25.0% |
| ! | CAATATTTCGTAATCATTGA+AGG | + | chr8_4:7936972-7936991 | Msa1311230:intron | 25.0% |
| ! | AGCTAGATAATATATGGTTA+TGG | + | chr8_4:7937213-7937232 | Msa1311230:intron | 25.0% |
| ! | CTCAATAAAGCTATAACAAA+CGG | + | chr8_4:7937945-7937964 | Msa1311230:intron | 25.0% |
| ! | TCAATAAAGCTATAACAAAC+GGG | + | chr8_4:7937946-7937965 | Msa1311230:intron | 25.0% |
| !! | AATTGATAGCTAAATTCAAG+TGG | - | chr8_4:7938101-7938120 | None:intergenic | 25.0% |
| !! | TTTGGTCTCTTCTTTTTATA+TGG | - | chr8_4:7938156-7938175 | None:intergenic | 25.0% |
| ! | TTAGTTACTTCCTATATCAA+TGG | + | chr8_4:7938920-7938939 | Msa1311230:three_prime_UTR | 25.0% |
| ! | AAATGAATGTCCATTGATAT+AGG | - | chr8_4:7938933-7938952 | None:intergenic | 25.0% |
| ! | ATTTGATAGATGTCAATATC+AGG | - | chr8_4:7938972-7938991 | None:intergenic | 25.0% |
| GAAGACAATATGTGATATGA+GGG | - | chr8_4:7934082-7934101 | None:intergenic | 30.0% | |
| TGAAGACAATATGTGATATG+AGG | - | chr8_4:7934083-7934102 | None:intergenic | 30.0% | |
| TTGAATGAGACAACAAAGAA+TGG | - | chr8_4:7934120-7934139 | None:intergenic | 30.0% | |
| ATTCAATTGAACTTCACTAG+TGG | + | chr8_4:7934134-7934153 | Msa1311230:intron | 30.0% | |
| ! | CATTTTTCCTTTCTTTCCTT+CGG | + | chr8_4:7934200-7934219 | Msa1311230:intron | 30.0% |
| TCAATTAAAGCAAAGAGTTC+AGG | + | chr8_4:7934292-7934311 | Msa1311230:five_prime_UTR | 30.0% | |
| GTGATAAAATTACTGAGACT+AGG | + | chr8_4:7934380-7934399 | Msa1311230:CDS | 30.0% | |
| GAGACTTACAATTTCAGATT+CGG | - | chr8_4:7934437-7934456 | None:intergenic | 30.0% | |
| CATTATATTGAAAACGTGTC+TGG | + | chr8_4:7934515-7934534 | Msa1311230:intron | 30.0% | |
| ! | GCTGCTTTCATAAATTATGT+TGG | + | chr8_4:7934843-7934862 | Msa1311230:intron | 30.0% |
| !! | TCACTTTAAAATAAGCTACC+CGG | + | chr8_4:7934933-7934952 | Msa1311230:intron | 30.0% |
| ! | AAAATAGTCTTAGGTGGTTT+GGG | + | chr8_4:7935107-7935126 | Msa1311230:intron | 30.0% |
| ! | CACCTATAGATTTTGTAGTA+AGG | + | chr8_4:7935148-7935167 | Msa1311230:intron | 30.0% |
| CTCCTTACTACAAAATCTAT+AGG | - | chr8_4:7935153-7935172 | None:intergenic | 30.0% | |
| GTAGAACATTGGATAAACAA+GGG | - | chr8_4:7935448-7935467 | None:intergenic | 30.0% | |
| AGTAGAACATTGGATAAACA+AGG | - | chr8_4:7935449-7935468 | None:intergenic | 30.0% | |
| CATACAAAACCTTATACCTA+AGG | - | chr8_4:7935493-7935512 | None:intergenic | 30.0% | |
| GATACGCAATTTAGTACAAA+GGG | - | chr8_4:7935585-7935604 | None:intergenic | 30.0% | |
| ! | TTCTTTGCTCATTTTACTTG+TGG | + | chr8_4:7935726-7935745 | Msa1311230:intron | 30.0% |
| ! | ATATATGGATGGATTCTCTT+TGG | + | chr8_4:7935865-7935884 | Msa1311230:intron | 30.0% |
| ! | TATATGGATGGATTCTCTTT+GGG | + | chr8_4:7935866-7935885 | Msa1311230:intron | 30.0% |
| ATAACTAAACTAGCAATGAC+TGG | - | chr8_4:7936178-7936197 | None:intergenic | 30.0% | |
| ! | TCATGCAAGTTCTTATCTTT+TGG | + | chr8_4:7936236-7936255 | Msa1311230:intron | 30.0% |
| ! | GGTATTCACATTTGAAACTT+TGG | + | chr8_4:7936257-7936276 | Msa1311230:intron | 30.0% |
| ATGGATAGGTTGTAAGAATT+TGG | + | chr8_4:7936327-7936346 | Msa1311230:CDS | 30.0% | |
| ! | AAAAGCATAAAGCATACCAA+TGG | - | chr8_4:7936383-7936402 | None:intergenic | 30.0% |
| TGATCGAAATGCAACAAATA+GGG | - | chr8_4:7936558-7936577 | None:intergenic | 30.0% | |
| ATGATCGAAATGCAACAAAT+AGG | - | chr8_4:7936559-7936578 | None:intergenic | 30.0% | |
| TTAGTACCCAAATCTCAAAT+GGG | + | chr8_4:7936669-7936688 | Msa1311230:intron | 30.0% | |
| CAAGATAGAAACACAAGATT+TGG | - | chr8_4:7936753-7936772 | None:intergenic | 30.0% | |
| ! | ATCTTGTGTTTCTATCTTGT+TGG | + | chr8_4:7936754-7936773 | Msa1311230:intron | 30.0% |
| AGACAACCGTAAAAAATAGA+TGG | - | chr8_4:7936786-7936805 | None:intergenic | 30.0% | |
| GTTGTATCTTATGAAATCCT+GGG | + | chr8_4:7936930-7936949 | Msa1311230:intron | 30.0% | |
| GTATTTATGCAATAGTCACT+CGG | - | chr8_4:7937032-7937051 | None:intergenic | 30.0% | |
| TAATAGTTACTACATGCAAG+TGG | - | chr8_4:7937194-7937213 | None:intergenic | 30.0% | |
| ATATACAACCAATTCTCCAA+GGG | + | chr8_4:7937445-7937464 | Msa1311230:CDS | 30.0% | |
| ! | TCTTATTGGTTGTCTGATTT+AGG | + | chr8_4:7937541-7937560 | Msa1311230:intron | 30.0% |
| ! | CTTATTGGTTGTCTGATTTA+GGG | + | chr8_4:7937542-7937561 | Msa1311230:intron | 30.0% |
| TTTAGAGGAGAGAGAAAATA+TGG | - | chr8_4:7937773-7937792 | None:intergenic | 30.0% | |
| AATGTGCAAATTATTGTCCA+TGG | + | chr8_4:7937974-7937993 | Msa1311230:intron | 30.0% | |
| ATTGTCCATGGATATATCTA+TGG | + | chr8_4:7937986-7938005 | Msa1311230:intron | 30.0% | |
| ATACTCCATAGATATATCCA+TGG | - | chr8_4:7937994-7938013 | None:intergenic | 30.0% | |
| ATGGATATATCTATGGAGTA+TGG | + | chr8_4:7937993-7938012 | Msa1311230:intron | 30.0% | |
| CTAGAGCTATATTACCAATA+TGG | + | chr8_4:7938025-7938044 | Msa1311230:intron | 30.0% | |
| CATATTCTCGATATCCATAT+TGG | - | chr8_4:7938042-7938061 | None:intergenic | 30.0% | |
| !! | ATATGGTTCTAAACTTCTAG+TGG | - | chr8_4:7938139-7938158 | None:intergenic | 30.0% |
| TTAGTTTCAAAGCAAACAAG+GGG | - | chr8_4:7938339-7938358 | None:intergenic | 30.0% | |
| CTTAGTTTCAAAGCAAACAA+GGG | - | chr8_4:7938340-7938359 | None:intergenic | 30.0% | |
| TCTTAGTTTCAAAGCAAACA+AGG | - | chr8_4:7938341-7938360 | None:intergenic | 30.0% | |
| !!! | AGCATTTCTTGACGTTTTTT+CGG | - | chr8_4:7938394-7938413 | None:intergenic | 30.0% |
| TTCACACCAACTATAGATTA+CGG | - | chr8_4:7938419-7938438 | None:intergenic | 30.0% | |
| ! | ACTTTTTGCTTCTTTCGTTT+GGG | - | chr8_4:7938682-7938701 | None:intergenic | 30.0% |
| ! | AACTTTTTGCTTCTTTCGTT+TGG | - | chr8_4:7938683-7938702 | None:intergenic | 30.0% |
| AAAATATAGGCACTTCAGTA+AGG | - | chr8_4:7938771-7938790 | None:intergenic | 30.0% | |
| ! | TGTTTCTGCAGCAAAAATAT+AGG | - | chr8_4:7938784-7938803 | None:intergenic | 30.0% |
| CATGTGTATATTAGCCAATA+AGG | - | chr8_4:7938821-7938840 | None:intergenic | 30.0% | |
| AGTAGTTTCAGCAAATATGT+TGG | + | chr8_4:7938891-7938910 | Msa1311230:three_prime_UTR | 30.0% | |
| AGAAGAGAAAGAAGAAGAGA+TGG | - | chr8_4:7933883-7933902 | None:intergenic | 35.0% | |
| !! | AAAAGCTTTAAAGCTCAACC+GGG | - | chr8_4:7934954-7934973 | None:intergenic | 35.0% |
| !! | CAAAAGCTTTAAAGCTCAAC+CGG | - | chr8_4:7934955-7934974 | None:intergenic | 35.0% |
| !! | AGATGGTGGAAAATAGTCTT+AGG | + | chr8_4:7935098-7935117 | Msa1311230:intron | 35.0% |
| ! | GAAAATAGTCTTAGGTGGTT+TGG | + | chr8_4:7935106-7935125 | Msa1311230:intron | 35.0% |
| AGTAAGGAGAGTAGATCAAA+TGG | + | chr8_4:7935164-7935183 | Msa1311230:intron | 35.0% | |
| ! | TAATGAGTTGGACCGAAATA+TGG | + | chr8_4:7935263-7935282 | Msa1311230:intron | 35.0% |
| ! | AAGTCTTTTCCCAATAAGTG+GGG | - | chr8_4:7935332-7935351 | None:intergenic | 35.0% |
| ! | CAAGTCTTTTCCCAATAAGT+GGG | - | chr8_4:7935333-7935352 | None:intergenic | 35.0% |
| !! | TTTTGTGAGCTACTTTCCTT+AGG | + | chr8_4:7935474-7935493 | Msa1311230:intron | 35.0% |
| ! | AGCTACTTTCCTTAGGTATA+AGG | + | chr8_4:7935481-7935500 | Msa1311230:intron | 35.0% |
| CGATACGCAATTTAGTACAA+AGG | - | chr8_4:7935586-7935605 | None:intergenic | 35.0% | |
| TTGTACTAAATTGCGTATCG+CGG | + | chr8_4:7935586-7935605 | Msa1311230:intron | 35.0% | |
| TCTATAGCGCTGTAATATAG+AGG | - | chr8_4:7935635-7935654 | None:intergenic | 35.0% | |
| TTGACGACACTAGTGAATAT+TGG | + | chr8_4:7935672-7935691 | Msa1311230:intron | 35.0% | |
| AAAAATTGCTCCATGGTGAA+GGG | - | chr8_4:7935708-7935727 | None:intergenic | 35.0% | |
| AGCAAAGAAAAATTGCTCCA+TGG | - | chr8_4:7935715-7935734 | None:intergenic | 35.0% | |
| AGAAATGCCAATGATGTCAT+GGG | + | chr8_4:7935806-7935825 | Msa1311230:intron | 35.0% | |
| TCTATATCCCATGACATCAT+TGG | - | chr8_4:7935816-7935835 | None:intergenic | 35.0% | |
| ! | ATATGGATGGATTCTCTTTG+GGG | + | chr8_4:7935867-7935886 | Msa1311230:intron | 35.0% |
| ! | ATCTCTCAGAGTATTATCAG+TGG | - | chr8_4:7935927-7935946 | None:intergenic | 35.0% |
| !! | TCTCTTTTGGTGTACTTTGT+AGG | + | chr8_4:7935980-7935999 | Msa1311230:intron | 35.0% |
| !! | TGGTTTGGTAATAGTGTATG+TGG | + | chr8_4:7936107-7936126 | Msa1311230:intron | 35.0% |
| ! | GGTTTGGTAATAGTGTATGT+GGG | + | chr8_4:7936108-7936127 | Msa1311230:intron | 35.0% |
| ! | TTCACATTTGAAACTTTGGC+AGG | + | chr8_4:7936261-7936280 | Msa1311230:intron | 35.0% |
| AATTTCAAATGTACTCCCTC+CGG | + | chr8_4:7936432-7936451 | Msa1311230:intron | 35.0% | |
| ! | AACAAATAGGGGTATGTTAG+TGG | - | chr8_4:7936546-7936565 | None:intergenic | 35.0% |
| GATCGAAATGCAACAAATAG+GGG | - | chr8_4:7936557-7936576 | None:intergenic | 35.0% | |
| ! | CATTTGAGATTTGGGTACTA+AGG | - | chr8_4:7936670-7936689 | None:intergenic | 35.0% |
| CTTAGTACCCAAATCTCAAA+TGG | + | chr8_4:7936668-7936687 | Msa1311230:intron | 35.0% | |
| GGTTGTATCTTATGAAATCC+TGG | + | chr8_4:7936929-7936948 | Msa1311230:intron | 35.0% | |
| GCATAAATACATTGAACTGC+TGG | + | chr8_4:7937042-7937061 | Msa1311230:intron | 35.0% | |
| CAATTTGTGCAGTACAAATC+AGG | - | chr8_4:7937095-7937114 | None:intergenic | 35.0% | |
| AACTCTTACTATCATGTGCA+TGG | + | chr8_4:7937160-7937179 | Msa1311230:intron | 35.0% | |
| GATATACAACCAATTCTCCA+AGG | + | chr8_4:7937444-7937463 | Msa1311230:CDS | 35.0% | |
| TATACATACCCTTGGAGAAT+TGG | - | chr8_4:7937456-7937475 | None:intergenic | 35.0% | |
| ! | GAATATGATCCATCTTTTCG+TGG | + | chr8_4:7938055-7938074 | Msa1311230:intron | 35.0% |
| ! | ACTGAAAGACTTGTTTGCTT+TGG | - | chr8_4:7938174-7938193 | None:intergenic | 35.0% |
| AAAGGAACAGAAAAGATGGA+TGG | - | chr8_4:7938297-7938316 | None:intergenic | 35.0% | |
| TAGTTTCAAAGCAAACAAGG+GGG | - | chr8_4:7938338-7938357 | None:intergenic | 35.0% | |
| TGCTTACCGTAATCTATAGT+TGG | + | chr8_4:7938410-7938429 | Msa1311230:intron | 35.0% | |
| ! | CTGATTTTCTGTGACCTTAT+TGG | + | chr8_4:7938804-7938823 | Msa1311230:three_prime_UTR | 35.0% |
| GAGACAACAAAGAATGGTTC+TGG | - | chr8_4:7934114-7934133 | None:intergenic | 40.0% | |
| TTCCTTTCTTTCCTTCGGTT+TGG | + | chr8_4:7934205-7934224 | Msa1311230:intron | 40.0% | |
| !! | CAATAAAAGCACCAAACCGA+AGG | - | chr8_4:7934219-7934238 | None:intergenic | 40.0% |
| TTAAACGTAATCACGCGTGT+TGG | - | chr8_4:7934579-7934598 | None:intergenic | 40.0% | |
| ACTTAGACAAACACGTACAC+CGG | - | chr8_4:7934656-7934675 | None:intergenic | 40.0% | |
| AGTGCATGTCACATCATTGT+TGG | + | chr8_4:7934673-7934692 | Msa1311230:intron | 40.0% | |
| ! | TGTCACATCATTGTTGGTTG+TGG | + | chr8_4:7934679-7934698 | Msa1311230:intron | 40.0% |
| !!! | CGGTTGAGCTTTAAAGCTTT+TGG | + | chr8_4:7934953-7934972 | Msa1311230:intron | 40.0% |
| GCACCTTATAGTAGAGAAGA+TGG | + | chr8_4:7935081-7935100 | Msa1311230:intron | 40.0% | |
| CCACCATCTTCTCTACTATA+AGG | - | chr8_4:7935087-7935106 | None:intergenic | 40.0% | |
| CCTTATAGTAGAGAAGATGG+TGG | + | chr8_4:7935084-7935103 | Msa1311230:intron | 40.0% | |
| ! | TGGTGGAAAATAGTCTTAGG+TGG | + | chr8_4:7935101-7935120 | Msa1311230:intron | 40.0% |
| AAGGAGAGTAGATCAAATGG+AGG | + | chr8_4:7935167-7935186 | Msa1311230:intron | 40.0% | |
| AGTTAGATCAGTAGAGACAG+AGG | + | chr8_4:7935192-7935211 | Msa1311230:intron | 40.0% | |
| ! | CCAAGTCTTTTCCCAATAAG+TGG | - | chr8_4:7935334-7935353 | None:intergenic | 40.0% |
| CCACTTATTGGGAAAAGACT+TGG | + | chr8_4:7935331-7935350 | Msa1311230:intron | 40.0% | |
| ! | GGAAAAGACTTGGTTGTTGT+TGG | + | chr8_4:7935341-7935360 | Msa1311230:intron | 40.0% |
| TACAAAGGGTTGCCAAATAG+CGG | - | chr8_4:7935571-7935590 | None:intergenic | 40.0% | |
| TCACTAGTGTCGTCAAATAG+CGG | - | chr8_4:7935668-7935687 | None:intergenic | 40.0% | |
| AAAATTGCTCCATGGTGAAG+GGG | - | chr8_4:7935707-7935726 | None:intergenic | 40.0% | |
| GAAAAATTGCTCCATGGTGA+AGG | - | chr8_4:7935709-7935728 | None:intergenic | 40.0% | |
| GAGAAATGCCAATGATGTCA+TGG | + | chr8_4:7935805-7935824 | Msa1311230:intron | 40.0% | |
| TGATAATTAAGCGGGCAGAA+TGG | + | chr8_4:7936308-7936327 | Msa1311230:CDS | 40.0% | |
| !! | CAATGGCTCTAAGCATCTTA+AGG | - | chr8_4:7936366-7936385 | None:intergenic | 40.0% |
| CTTAAGATGCTTAGAGCCAT+TGG | + | chr8_4:7936364-7936383 | Msa1311230:CDS | 40.0% | |
| ! | AGGTGTCCCATTTGAGATTT+GGG | - | chr8_4:7936678-7936697 | None:intergenic | 40.0% |
| TCGTAATCATTGAAGGTCTC+TGG | + | chr8_4:7936979-7936998 | Msa1311230:intron | 40.0% | |
| ATTGAACTGCTGGAGTATGA+AGG | + | chr8_4:7937052-7937071 | Msa1311230:intron | 40.0% | |
| TTGTGCAGTACAAATCAGGA+AGG | - | chr8_4:7937091-7937110 | None:intergenic | 40.0% | |
| ! | TCAAAACAAGTGCTGCGTAA+AGG | - | chr8_4:7937278-7937297 | None:intergenic | 40.0% |
| !!! | TTACGCAGCACTTGTTTTGA+TGG | + | chr8_4:7937278-7937297 | Msa1311230:intron | 40.0% |
| GATGGAAAATCTCAAAGCAG+AGG | + | chr8_4:7937296-7937315 | Msa1311230:CDS | 40.0% | |
| GCAGTAGATTTCACCATATC+TGG | - | chr8_4:7937342-7937361 | None:intergenic | 40.0% | |
| GAAGAGCTAAGTACAAGTGT+TGG | + | chr8_4:7937417-7937436 | Msa1311230:CDS | 40.0% | |
| GAGCTTAGTATACATACCCT+TGG | - | chr8_4:7937464-7937483 | None:intergenic | 40.0% | |
| ACTTCTTCTCCACGAAAAGA+TGG | - | chr8_4:7938067-7938086 | None:intergenic | 40.0% | |
| GCTTTCAGGAGACAATTCTA+AGG | - | chr8_4:7938214-7938233 | None:intergenic | 40.0% | |
| ACTCTTGTAGTCATGCTTTC+AGG | - | chr8_4:7938228-7938247 | None:intergenic | 40.0% | |
| GTGGAAAGGAACAGAAAAGA+TGG | - | chr8_4:7938301-7938320 | None:intergenic | 40.0% | |
| !!! | TGACGTTTTTTCGGTCACTA+AGG | - | chr8_4:7938385-7938404 | None:intergenic | 40.0% |
| ATCAATTGGGGACAGAGTAA+GGG | + | chr8_4:7938541-7938560 | Msa1311230:intron | 40.0% | |
| CGAAAGAAGCAAAAAGTTGC+TGG | + | chr8_4:7938685-7938704 | Msa1311230:CDS | 40.0% | |
| ATATAGGCACTTCAGTAAGG+AGG | - | chr8_4:7938768-7938787 | None:intergenic | 40.0% | |
| CTTAGAGCAACATGTGAGAG+AGG | - | chr8_4:7933994-7934013 | None:intergenic | 45.0% | |
| GTGATATGAGGGAAGAACGA+TGG | - | chr8_4:7934071-7934090 | None:intergenic | 45.0% | |
| CACCAAACCGAAGGAAAGAA+AGG | - | chr8_4:7934210-7934229 | None:intergenic | 45.0% | |
| TGAGACTAGGGTTCAAGATG+TGG | + | chr8_4:7934393-7934412 | Msa1311230:CDS | 45.0% | |
| CTAGGGTTCAAGATGTGGAT+TGG | + | chr8_4:7934398-7934417 | Msa1311230:CDS | 45.0% | |
| TGTTGGTATCAGACAACCAC+GGG | - | chr8_4:7934562-7934581 | None:intergenic | 45.0% | |
| ! | GTGTTGGTATCAGACAACCA+CGG | - | chr8_4:7934563-7934582 | None:intergenic | 45.0% |
| !! | AATAAGTGGGGTTGGCTACA+TGG | - | chr8_4:7935320-7935339 | None:intergenic | 45.0% |
| ATGTAGCCAACCCCACTTAT+TGG | + | chr8_4:7935319-7935338 | Msa1311230:intron | 45.0% | |
| TGTAGCCAACCCCACTTATT+GGG | + | chr8_4:7935320-7935339 | Msa1311230:intron | 45.0% | |
| ! | CTTTTCCCAATAAGTGGGGT+TGG | - | chr8_4:7935328-7935347 | None:intergenic | 45.0% |
| GAAGTAATGAAGGGAACCTG+TGG | + | chr8_4:7935404-7935423 | Msa1311230:intron | 45.0% | |
| CTAATGCTGCACTTAACCAC+AGG | - | chr8_4:7935423-7935442 | None:intergenic | 45.0% | |
| TAGCGGTTGCAGTAGAACAT+GGG | - | chr8_4:7935554-7935573 | None:intergenic | 45.0% | |
| ATAGCGGTTGCAGTAGAACA+TGG | - | chr8_4:7935555-7935574 | None:intergenic | 45.0% | |
| GTTCTACTGCAACCGCTATT+TGG | + | chr8_4:7935556-7935575 | Msa1311230:intron | 45.0% | |
| AGTGTATGTGGGTTTGACCA+CGG | + | chr8_4:7936119-7936138 | Msa1311230:intron | 45.0% | |
| GTATATGCGCAAATGTGGAC+TGG | + | chr8_4:7936141-7936160 | Msa1311230:intron | 45.0% | |
| ATTAAGCGGGCAGAATGGAT+AGG | + | chr8_4:7936313-7936332 | Msa1311230:CDS | 45.0% | |
| AGAGGACACCTAATTTGAGC+CGG | - | chr8_4:7936454-7936473 | None:intergenic | 45.0% | |
| ! | GAGGTGTCCCATTTGAGATT+TGG | - | chr8_4:7936679-7936698 | None:intergenic | 45.0% |
| ATGGGACACCTCATATGAGA+CGG | + | chr8_4:7936687-7936706 | Msa1311230:intron | 45.0% | |
| ! | TATGAGACGGGGGAGTATAA+TGG | + | chr8_4:7936700-7936719 | Msa1311230:intron | 45.0% |
| ATGAAATCCTGGGTCTATCC+TGG | + | chr8_4:7936940-7936959 | Msa1311230:intron | 45.0% | |
| GAAATATTGCGACACAGTCC+AGG | - | chr8_4:7936961-7936980 | None:intergenic | 45.0% | |
| TATGCAATAGTCACTCGGTC+TGG | - | chr8_4:7937027-7937046 | None:intergenic | 45.0% | |
| CGCATCTCTTGTACCAGATA+TGG | + | chr8_4:7937326-7937345 | Msa1311230:CDS | 45.0% | |
| CCTCGTTGTTACAGTTCAGT+AGG | - | chr8_4:7937383-7937402 | None:intergenic | 45.0% | |
| CCTACTGAACTGTAACAACG+AGG | + | chr8_4:7937380-7937399 | Msa1311230:CDS | 45.0% | |
| AAAGATGGATGGCAAGAGGA+GGG | - | chr8_4:7938286-7938305 | None:intergenic | 45.0% | |
| AAAAGATGGATGGCAAGAGG+AGG | - | chr8_4:7938287-7938306 | None:intergenic | 45.0% | |
| CAGAAAAGATGGATGGCAAG+AGG | - | chr8_4:7938290-7938309 | None:intergenic | 45.0% | |
| TATCAGCAGTGAGAGTGGAA+AGG | - | chr8_4:7938315-7938334 | None:intergenic | 45.0% | |
| CATCAATTGGGGACAGAGTA+AGG | + | chr8_4:7938540-7938559 | Msa1311230:intron | 45.0% | |
| AGAGGGTGAACTGTATAAGG+AGG | - | chr8_4:7938659-7938678 | None:intergenic | 45.0% | |
| TGCTTCTTTCGTTTGGGAGA+GGG | - | chr8_4:7938676-7938695 | None:intergenic | 45.0% | |
| TTGCTTCTTTCGTTTGGGAG+AGG | - | chr8_4:7938677-7938696 | None:intergenic | 45.0% | |
| AGAGGCGGGACTCGAATTTA+GGG | - | chr8_4:7933976-7933995 | None:intergenic | 50.0% | |
| AGAGCAACATGTGAGAGAGG+CGG | - | chr8_4:7933991-7934010 | None:intergenic | 50.0% | |
| AGTTACCCGCCTCATCCATT+TGG | + | chr8_4:7934012-7934031 | Msa1311230:five_prime_UTR | 50.0% | |
| GAACTCCAAATGGATGAGGC+GGG | - | chr8_4:7934020-7934039 | None:intergenic | 50.0% | |
| CGAACTCCAAATGGATGAGG+CGG | - | chr8_4:7934021-7934040 | None:intergenic | 50.0% | |
| CGACGAACTCCAAATGGATG+AGG | - | chr8_4:7934024-7934043 | None:intergenic | 50.0% | |
| ! | ATGCGTCGACGAACTCCAAA+TGG | - | chr8_4:7934030-7934049 | None:intergenic | 50.0% |
| TTGAAAACGTGTCTGGTGCC+CGG | + | chr8_4:7934522-7934541 | Msa1311230:intron | 50.0% | |
| TCAATGAGCTAGTGCGTGAC+CGG | + | chr8_4:7934634-7934653 | Msa1311230:intron | 50.0% | |
| TGCGTATCGCGGAACAATAG+CGG | + | chr8_4:7935597-7935616 | Msa1311230:intron | 50.0% | |
| CCACATTTGCGCATATACCG+TGG | - | chr8_4:7936139-7936158 | None:intergenic | 50.0% | |
| CCACGGTATATGCGCAAATG+TGG | + | chr8_4:7936136-7936155 | Msa1311230:intron | 50.0% | |
| TACTCCCTCCGGCTCAAATT+AGG | + | chr8_4:7936443-7936462 | Msa1311230:intron | 50.0% | |
| GACACCTAATTTGAGCCGGA+GGG | - | chr8_4:7936450-7936469 | None:intergenic | 50.0% | |
| TGGGACACCTCATATGAGAC+GGG | + | chr8_4:7936688-7936707 | Msa1311230:intron | 50.0% | |
| ATACTCCCCCGTCTCATATG+AGG | - | chr8_4:7936698-7936717 | None:intergenic | 50.0% | |
| TGAAGGTCTCTGGTCTATCC+TGG | + | chr8_4:7936989-7937008 | Msa1311230:intron | 50.0% | |
| TTGGGGACAGAGTAAGGGAA+AGG | + | chr8_4:7938546-7938565 | Msa1311230:intron | 50.0% | |
| TGGGGACAGAGTAAGGGAAA+GGG | + | chr8_4:7938547-7938566 | Msa1311230:intron | 50.0% | |
| GGGAGAGGGTGAACTGTATA+AGG | - | chr8_4:7938662-7938681 | None:intergenic | 50.0% | |
| GGCACTTCAGTAAGGAGGAT+GGG | - | chr8_4:7938763-7938782 | None:intergenic | 50.0% | |
| AGGCACTTCAGTAAGGAGGA+TGG | - | chr8_4:7938764-7938783 | None:intergenic | 50.0% | |
| GAGAGGCGGGACTCGAATTT+AGG | - | chr8_4:7933977-7933996 | None:intergenic | 55.0% | |
| GAGCAACATGTGAGAGAGGC+GGG | - | chr8_4:7933990-7934009 | None:intergenic | 55.0% | |
| TCGACGCATCTGTCTGCAAC+AGG | + | chr8_4:7934041-7934060 | Msa1311230:five_prime_UTR | 55.0% | |
| !! | ACGGGAGAAGTGTTCGACAC+CGG | - | chr8_4:7934544-7934563 | None:intergenic | 55.0% |
| GCGTATCGCGGAACAATAGC+GGG | + | chr8_4:7935598-7935617 | Msa1311230:intron | 55.0% | |
| ATGTGTGTGCCCCTTCACCA+TGG | + | chr8_4:7935695-7935714 | Msa1311230:intron | 55.0% | |
| GGACACCTAATTTGAGCCGG+AGG | - | chr8_4:7936451-7936470 | None:intergenic | 55.0% | |
| GGGACACCTCATATGAGACG+GGG | + | chr8_4:7936689-7936708 | Msa1311230:intron | 55.0% | |
| GGACACCTCATATGAGACGG+GGG | + | chr8_4:7936690-7936709 | Msa1311230:intron | 55.0% | |
| ACACAGTCCAGGATAGACCC+AGG | - | chr8_4:7936950-7936969 | None:intergenic | 55.0% | |
| GTCTGGACACAACACAGTCC+AGG | - | chr8_4:7937010-7937029 | None:intergenic | 55.0% | |
| !! | CGGGAGAAGTGTTCGACACC+GGG | - | chr8_4:7934543-7934562 | None:intergenic | 60.0% |
| ! | GGTGTCGAACACTTCTCCCG+TGG | + | chr8_4:7934543-7934562 | Msa1311230:intron | 60.0% |
| !! | GGGGGTATCAGCAGTGAGAG+TGG | - | chr8_4:7938320-7938339 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 7933871 | 7939010 | 7933871 | ID=Msa1311230;Name=Msa1311230 |
| chr8_4 | mRNA | 7933871 | 7939010 | 7933871 | ID=Msa1311230-mRNA-1;Parent=Msa1311230;Name=Msa1311230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=235|1|1|1|0.75|0.6|5|251|168 |
| chr8_4 | exon | 7933871 | 7934062 | 7933871 | ID=Msa1311230-mRNA-1:exon:2906;Parent=Msa1311230-mRNA-1 |
| chr8_4 | exon | 7934288 | 7934447 | 7934288 | ID=Msa1311230-mRNA-1:exon:2907;Parent=Msa1311230-mRNA-1 |
| chr8_4 | exon | 7936283 | 7936385 | 7936283 | ID=Msa1311230-mRNA-1:exon:2908;Parent=Msa1311230-mRNA-1 |
| chr8_4 | exon | 7937286 | 7937466 | 7937286 | ID=Msa1311230-mRNA-1:exon:2909;Parent=Msa1311230-mRNA-1 |
| chr8_4 | exon | 7938654 | 7939010 | 7938654 | ID=Msa1311230-mRNA-1:exon:2910;Parent=Msa1311230-mRNA-1 |
| chr8_4 | five_prime_UTR | 7933871 | 7934062 | 7933871 | ID=Msa1311230-mRNA-1:five_prime_utr;Parent=Msa1311230-mRNA-1 |
| chr8_4 | five_prime_UTR | 7934288 | 7934330 | 7934288 | ID=Msa1311230-mRNA-1:five_prime_utr;Parent=Msa1311230-mRNA-1 |
| chr8_4 | CDS | 7934331 | 7934447 | 7934331 | ID=Msa1311230-mRNA-1:cds;Parent=Msa1311230-mRNA-1 |
| chr8_4 | CDS | 7936283 | 7936385 | 7936283 | ID=Msa1311230-mRNA-1:cds;Parent=Msa1311230-mRNA-1 |
| chr8_4 | CDS | 7937286 | 7937466 | 7937286 | ID=Msa1311230-mRNA-1:cds;Parent=Msa1311230-mRNA-1 |
| chr8_4 | CDS | 7938654 | 7938759 | 7938654 | ID=Msa1311230-mRNA-1:cds;Parent=Msa1311230-mRNA-1 |
| chr8_4 | three_prime_UTR | 7938760 | 7939010 | 7938760 | ID=Msa1311230-mRNA-1:three_prime_utr;Parent=Msa1311230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
