Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311410 | sp|Q41649|FKB15_VICFA | 92.481 | 133 | 10 | 0 | 14 | 146 | 16 | 148 | 7.64e-88 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311410 | G7LF65 | 96.689 | 151 | 2 | 1 | 1 | 148 | 1 | 151 | 4.59e-99 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1273460 | Msa1311410 | 0.946079 | 9.134521e-105 | -8.615850e-47 |
| Msa0411160 | Msa1311410 | 0.802379 | 5.770390e-49 | -8.615850e-47 |
| Msa0411190 | Msa1311410 | 0.811323 | 7.414190e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311410 | MtrunA17_Chr8g0339171 | 96.689 | 151 | 2 | 1 | 1 | 148 | 1 | 151 | 8.83e-103 | 290 |
| Msa1311410 | MtrunA17_Chr7g0234801 | 58.140 | 86 | 36 | 0 | 47 | 132 | 52 | 137 | 4.72e-28 | 107 |
| Msa1311410 | MtrunA17_Chr8g0339141 | 59.302 | 86 | 35 | 0 | 47 | 132 | 58 | 143 | 5.38e-27 | 105 |
| Msa1311410 | MtrunA17_Chr8g0377771 | 58.140 | 86 | 36 | 0 | 47 | 132 | 56 | 141 | 4.01e-26 | 102 |
| Msa1311410 | MtrunA17_Chr7g0255551 | 50.000 | 86 | 43 | 0 | 47 | 132 | 39 | 124 | 7.51e-25 | 99.0 |
| Msa1311410 | MtrunA17_Chr4g0052911 | 47.525 | 101 | 42 | 2 | 43 | 132 | 137 | 237 | 3.97e-23 | 90.9 |
| Msa1311410 | MtrunA17_Chr5g0435521 | 42.718 | 103 | 52 | 2 | 50 | 145 | 35 | 137 | 1.77e-20 | 82.8 |
| Msa1311410 | MtrunA17_Chr8g0382711 | 40.000 | 110 | 55 | 2 | 43 | 141 | 104 | 213 | 4.60e-20 | 82.4 |
| Msa1311410 | MtrunA17_Chr5g0396231 | 52.632 | 95 | 38 | 4 | 43 | 134 | 409 | 499 | 1.44e-19 | 84.0 |
| Msa1311410 | MtrunA17_Chr8g0352971 | 50.575 | 87 | 41 | 2 | 48 | 132 | 18 | 104 | 1.32e-18 | 80.9 |
| Msa1311410 | MtrunA17_Chr4g0014351 | 41.573 | 89 | 52 | 0 | 47 | 135 | 781 | 869 | 2.76e-15 | 71.6 |
| Msa1311410 | MtrunA17_Chr4g0033841 | 38.000 | 100 | 58 | 2 | 47 | 142 | 130 | 229 | 3.02e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311410 | AT5G48580.1 | 75.714 | 140 | 34 | 0 | 4 | 143 | 9 | 148 | 7.96e-75 | 220 |
| Msa1311410 | AT3G25220.1 | 79.070 | 129 | 27 | 0 | 20 | 148 | 25 | 153 | 2.37e-72 | 214 |
| Msa1311410 | AT3G25230.1 | 61.628 | 86 | 33 | 0 | 47 | 132 | 57 | 142 | 1.86e-28 | 109 |
| Msa1311410 | AT3G25230.2 | 61.628 | 86 | 33 | 0 | 47 | 132 | 57 | 142 | 2.31e-28 | 109 |
| Msa1311410 | AT5G48570.1 | 58.621 | 87 | 36 | 0 | 47 | 133 | 65 | 151 | 6.15e-27 | 105 |
| Msa1311410 | AT5G45680.1 | 47.059 | 102 | 43 | 2 | 43 | 133 | 105 | 206 | 3.17e-24 | 93.6 |
| Msa1311410 | AT4G39710.1 | 43.564 | 101 | 46 | 2 | 43 | 132 | 108 | 208 | 9.36e-21 | 84.7 |
| Msa1311410 | AT4G39710.3 | 43.564 | 101 | 46 | 2 | 43 | 132 | 108 | 208 | 9.36e-21 | 84.7 |
| Msa1311410 | AT3G55520.2 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 9.05e-20 | 81.3 |
| Msa1311410 | AT3G55520.3 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 9.05e-20 | 81.3 |
| Msa1311410 | AT3G55520.1 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 9.05e-20 | 81.3 |
| Msa1311410 | AT4G25340.1 | 46.364 | 110 | 52 | 4 | 26 | 134 | 373 | 476 | 5.70e-19 | 82.4 |
| Msa1311410 | AT5G05420.1 | 47.312 | 93 | 46 | 3 | 43 | 134 | 52 | 142 | 1.05e-18 | 77.4 |
| Msa1311410 | AT3G12340.3 | 43.478 | 92 | 50 | 2 | 44 | 134 | 287 | 377 | 3.97e-15 | 71.2 |
| Msa1311410 | AT3G12340.2 | 43.478 | 92 | 50 | 2 | 44 | 134 | 287 | 377 | 3.97e-15 | 71.2 |
| Msa1311410 | AT3G12340.1 | 43.478 | 92 | 50 | 2 | 44 | 134 | 408 | 498 | 4.88e-15 | 71.2 |
| Msa1311410 | AT2G43560.1 | 40.449 | 89 | 49 | 2 | 47 | 131 | 124 | 212 | 2.46e-13 | 65.1 |
| Msa1311410 | AT2G43560.2 | 40.449 | 89 | 49 | 2 | 47 | 131 | 68 | 156 | 2.61e-13 | 63.9 |
| Msa1311410 | AT4G39710.2 | 47.059 | 51 | 27 | 0 | 43 | 93 | 108 | 158 | 1.21e-11 | 59.7 |
Find 43 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGATGTATTTAATTTAT+AGG | 0.154503 | 8_4:+8200541 | None:intergenic |
| CTTGACATCAGCCTCTTTCT+TGG | 0.250787 | 8_4:+8204892 | None:intergenic |
| AGGATGGGACCAAGGATTAT+TGG | 0.270346 | 8_4:-8201584 | Msa1311410:CDS |
| TCGTAATGAAAGCATTATTA+AGG | 0.285758 | 8_4:+8200621 | None:intergenic |
| TATAGACAAATCAAAATAAA+TGG | 0.286191 | 8_4:-8200685 | Msa1311410:exon |
| ATAGATGTATTTAATTTATA+GGG | 0.318439 | 8_4:+8200542 | None:intergenic |
| TAAATGGAAGACTAGACTTT+TGG | 0.334745 | 8_4:-8200669 | Msa1311410:three_prime_UTR |
| CCACCAAGCTCAAAATCAAT+TGG | 0.361034 | 8_4:+8202803 | None:intergenic |
| TTAATTTCTTGCAATTCAAT+TGG | 0.396652 | 8_4:-8200462 | Msa1311410:three_prime_UTR |
| GGATGGGACCAAGGATTATT+GGG | 0.400650 | 8_4:-8201583 | Msa1311410:CDS |
| ACCAACATCATGTGAAGTTC+AGG | 0.407504 | 8_4:-8203876 | Msa1311410:CDS |
| GGTTCCCCACCCACTATTCC+AGG | 0.437359 | 8_4:-8201499 | Msa1311410:intron |
| GGAGTTGCAGATTGGCGTTA+AGG | 0.447428 | 8_4:-8204870 | Msa1311410:intron |
| AAAACTCGGCTACGGAGAGC+AGG | 0.460344 | 8_4:-8201521 | Msa1311410:CDS |
| ACCAAGTGTTTCTCTCTCGT+TGG | 0.463274 | 8_4:+8205189 | None:intergenic |
| TGATAAATTACCTGGAATAG+TGG | 0.463707 | 8_4:+8201489 | None:intergenic |
| GTCATTGCATCAACATTACT+AGG | 0.477757 | 8_4:-8205108 | Msa1311410:intron |
| CTTAGTTTCTGCCAAGAAAG+AGG | 0.478701 | 8_4:-8204903 | Msa1311410:intron |
| ATATTTGACACTGAGCTTGT+GGG | 0.497294 | 8_4:-8200752 | Msa1311410:CDS |
| ATAAAGTGAAAGTACACTAT+CGG | 0.499659 | 8_4:-8203841 | Msa1311410:CDS |
| CACCAAGCTCAAAATCAATT+GGG | 0.508101 | 8_4:+8202804 | None:intergenic |
| TATATTTGACACTGAGCTTG+TGG | 0.517324 | 8_4:-8200753 | Msa1311410:CDS |
| TAAAGTGAAAGTACACTATC+GGG | 0.529261 | 8_4:-8203840 | Msa1311410:intron |
| GACACATTCCCAATAATCCT+TGG | 0.533580 | 8_4:+8201575 | None:intergenic |
| GATGTCAAGGAGTTGCAGAT+TGG | 0.543834 | 8_4:-8204878 | Msa1311410:CDS |
| GCCTGAACTTCACATGATGT+TGG | 0.549979 | 8_4:+8203875 | None:intergenic |
| ATTACCTGGAATAGTGGGTG+GGG | 0.550486 | 8_4:+8201495 | None:intergenic |
| TTCTTGGCAGGATGGGACCA+AGG | 0.556888 | 8_4:-8201592 | Msa1311410:intron |
| CAAGAAAGAGGCTGATGTCA+AGG | 0.559351 | 8_4:-8204891 | Msa1311410:CDS |
| CTGAAAATACCAGCAAAACT+CGG | 0.565715 | 8_4:-8201535 | Msa1311410:CDS |
| TAATAATGCTTTCATTACGA+AGG | 0.566466 | 8_4:-8200618 | Msa1311410:three_prime_UTR |
| GATAAATTACCTGGAATAGT+GGG | 0.572820 | 8_4:+8201490 | None:intergenic |
| GGATTATTGGGAATGTGTCT+TGG | 0.579154 | 8_4:-8201571 | Msa1311410:CDS |
| AATTACCTGGAATAGTGGGT+GGG | 0.589735 | 8_4:+8201494 | None:intergenic |
| AAATTACCTGGAATAGTGGG+TGG | 0.601549 | 8_4:+8201493 | None:intergenic |
| TGTTATCTAACTCTTAAGTG+AGG | 0.609860 | 8_4:-8200592 | Msa1311410:three_prime_UTR |
| ATACCAGCAAAACTCGGCTA+CGG | 0.614446 | 8_4:-8201529 | Msa1311410:CDS |
| AGAATCGAAAACAGTTCCAT+CGG | 0.618562 | 8_4:+8202844 | None:intergenic |
| GGTGGTGGTCAAGTGATCAA+AGG | 0.629184 | 8_4:-8202785 | Msa1311410:intron |
| TTGCAGGGAAAACTCACCGA+TGG | 0.633072 | 8_4:-8202860 | Msa1311410:intron |
| AAACTCGGCTACGGAGAGCA+GGG | 0.633671 | 8_4:-8201520 | Msa1311410:CDS |
| TGTGAAGTTCAGGCACACAA+AGG | 0.672019 | 8_4:-8203866 | Msa1311410:CDS |
| TCCAACGAGAGAGAAACACT+TGG | 0.700023 | 8_4:-8205190 | Msa1311410:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAGTAATATAATATTAAA+CGG | + | chr8_4:8204458-8204477 | None:intergenic | 10.0% |
| !! | AAAAATAAATTTCTCATAAT+AGG | - | chr8_4:8204705-8204724 | Msa1311410:intron | 10.0% |
| !!! | ATAGATGTATTTAATTTATA+GGG | + | chr8_4:8205091-8205110 | None:intergenic | 10.0% |
| !! | AATTAACATAAATATGGAAA+TGG | + | chr8_4:8201205-8201224 | None:intergenic | 15.0% |
| !! | AAATGTTCATGAATTTAATA+AGG | - | chr8_4:8201989-8202008 | Msa1311410:intron | 15.0% |
| !!! | TTGTTTTAAAATAATTATGC+TGG | - | chr8_4:8202204-8202223 | Msa1311410:intron | 15.0% |
| !!! | TGCTCAAATTTTATTTAATT+AGG | + | chr8_4:8203141-8203160 | None:intergenic | 15.0% |
| !! | TAAGATTTCATGATAAAATA+TGG | + | chr8_4:8203648-8203667 | None:intergenic | 15.0% |
| !!! | TTAATTGTCAAAGTAATTTT+GGG | + | chr8_4:8203686-8203705 | None:intergenic | 15.0% |
| !!! | TTTAATTGTCAAAGTAATTT+TGG | + | chr8_4:8203687-8203706 | None:intergenic | 15.0% |
| !!! | TAATGTTATGGATTATTTAT+TGG | + | chr8_4:8203711-8203730 | None:intergenic | 15.0% |
| !!! | TTTGTTTTATTACAAATTTC+TGG | - | chr8_4:8203965-8203984 | Msa1311410:intron | 15.0% |
| !! | TAATAAACAGTTAAATAACT+TGG | - | chr8_4:8204240-8204259 | Msa1311410:intron | 15.0% |
| !!! | TATACAAAATAATCTCATTT+TGG | - | chr8_4:8204652-8204671 | Msa1311410:intron | 15.0% |
| !! | TATAGACAAATCAAAATAAA+TGG | - | chr8_4:8204945-8204964 | Msa1311410:intron | 15.0% |
| !!! | GATAGATGTATTTAATTTAT+AGG | + | chr8_4:8205092-8205111 | None:intergenic | 15.0% |
| !! | ATAGAAATTGATGAATTGAA+GGG | + | chr8_4:8200666-8200685 | None:intergenic | 20.0% |
| !!! | TAGCTCAGTTTTTTTTTTTT+TGG | - | chr8_4:8200799-8200818 | Msa1311410:intron | 20.0% |
| !! | CACACAAATTAACATAAATA+TGG | + | chr8_4:8201211-8201230 | None:intergenic | 20.0% |
| !!! | ATTTATGTTAATTTGTGTGT+TGG | - | chr8_4:8201212-8201231 | Msa1311410:intron | 20.0% |
| !!! | TTTATGTTAATTTGTGTGTT+GGG | - | chr8_4:8201213-8201232 | Msa1311410:intron | 20.0% |
| !!! | TTTTTTTGTTGAGATTAGAA+TGG | - | chr8_4:8201581-8201600 | Msa1311410:CDS | 20.0% |
| !!! | TTTTTTGTTGAGATTAGAAT+GGG | - | chr8_4:8201582-8201601 | Msa1311410:CDS | 20.0% |
| !! | AATAGCTTATGCATTATTAT+TGG | + | chr8_4:8201659-8201678 | None:intergenic | 20.0% |
| !! | TAAATAACACAGTATCAAAA+TGG | + | chr8_4:8202572-8202591 | None:intergenic | 20.0% |
| !! | CAAGTCAAAATTTAATATGA+AGG | + | chr8_4:8202747-8202766 | None:intergenic | 20.0% |
| !!! | GTTTTGTTACTTTGAATTTT+TGG | - | chr8_4:8202889-8202908 | Msa1311410:intron | 20.0% |
| !! | TAAATTTAAATCCTTCTTGA+TGG | + | chr8_4:8203308-8203327 | None:intergenic | 20.0% |
| !!! | AATTTTCTTAACATCCAAAA+GGG | + | chr8_4:8203515-8203534 | None:intergenic | 20.0% |
| !!! | AAATTTTCTTAACATCCAAA+AGG | + | chr8_4:8203516-8203535 | None:intergenic | 20.0% |
| !!! | TATTTTGAAAGCTTTCTAAT+TGG | - | chr8_4:8203621-8203640 | Msa1311410:intron | 20.0% |
| !!! | TTTTTACATAAACTCATAAC+AGG | + | chr8_4:8204689-8204708 | None:intergenic | 20.0% |
| !!! | CATTGATAAATTTTGTTAGT+TGG | + | chr8_4:8204810-8204829 | None:intergenic | 20.0% |
| !!! | ATTTTGATTTGTCTATAGTT+CGG | + | chr8_4:8204942-8204961 | None:intergenic | 20.0% |
| !! | TTAATTTCTTGCAATTCAAT+TGG | - | chr8_4:8205168-8205187 | Msa1311410:five_prime_UTR | 20.0% |
| ! | TAGAAATTGATGAATTGAAG+GGG | + | chr8_4:8200665-8200684 | None:intergenic | 25.0% |
| ! | GATAGAAATTGATGAATTGA+AGG | + | chr8_4:8200667-8200686 | None:intergenic | 25.0% |
| !! | AAATAGACACTTTTGATCAA+AGG | + | chr8_4:8201079-8201098 | None:intergenic | 25.0% |
| !!! | TGATCAAAAGTGTCTATTTT+TGG | - | chr8_4:8201080-8201099 | Msa1311410:intron | 25.0% |
| !!! | TTGGTATTTTTAAGTTGTGT+TGG | - | chr8_4:8201099-8201118 | Msa1311410:intron | 25.0% |
| ! | CTTCTTCAACATTCAAAAAA+GGG | + | chr8_4:8201138-8201157 | None:intergenic | 25.0% |
| ! | ACTTCTTCAACATTCAAAAA+AGG | + | chr8_4:8201139-8201158 | None:intergenic | 25.0% |
| ! | ATTGTTATGTAACTGATACA+TGG | - | chr8_4:8201279-8201298 | Msa1311410:intron | 25.0% |
| !! | TATGTTTTCATGACCTAATT+TGG | - | chr8_4:8201445-8201464 | Msa1311410:intron | 25.0% |
| !! | ATGTTTTCATGACCTAATTT+GGG | - | chr8_4:8201446-8201465 | Msa1311410:intron | 25.0% |
| ! | ATAAACAATGAGCAATAAAG+AGG | + | chr8_4:8201712-8201731 | None:intergenic | 25.0% |
| !! | ATAAAGTGAAAGTACACTAT+CGG | - | chr8_4:8201789-8201808 | Msa1311410:intron | 25.0% |
| ! | AAGGAACTAAAAGAAAATGA+AGG | - | chr8_4:8201894-8201913 | Msa1311410:intron | 25.0% |
| ! | AGGAACTAAAAGAAAATGAA+GGG | - | chr8_4:8201895-8201914 | Msa1311410:intron | 25.0% |
| !!! | ATGTTAGTCTTTAGAGTAAA+AGG | - | chr8_4:8202016-8202035 | Msa1311410:intron | 25.0% |
| ! | AAATTTCAAATAGACGAGAA+TGG | + | chr8_4:8202074-8202093 | None:intergenic | 25.0% |
| ! | CTCTAAATATATATGATGTG+AGG | - | chr8_4:8202102-8202121 | Msa1311410:intron | 25.0% |
| ! | TGAGGCATACATATAAATAT+AGG | - | chr8_4:8202120-8202139 | Msa1311410:intron | 25.0% |
| ! | ATTATATTCAGTTTCTCCAT+GGG | + | chr8_4:8202154-8202173 | None:intergenic | 25.0% |
| ! | TATTATATTCAGTTTCTCCA+TGG | + | chr8_4:8202155-8202174 | None:intergenic | 25.0% |
| ! | TATGTAGCCTTTCAAATTAA+AGG | + | chr8_4:8202235-8202254 | None:intergenic | 25.0% |
| ! | TCTCATTAAAAACTGGAATA+AGG | + | chr8_4:8202337-8202356 | None:intergenic | 25.0% |
| !! | TATTCCAGTTTTTAATGAGA+TGG | - | chr8_4:8202337-8202356 | Msa1311410:intron | 25.0% |
| !! | ATTCCAGTTTTTAATGAGAT+GGG | - | chr8_4:8202338-8202357 | Msa1311410:intron | 25.0% |
| ! | AAAATTTCTCCAAACAACAT+AGG | + | chr8_4:8202387-8202406 | None:intergenic | 25.0% |
| ! | ACTGCAAAATTAAAGCTAAA+AGG | - | chr8_4:8202955-8202974 | Msa1311410:intron | 25.0% |
| ! | AATAGCAGATCAAAATTGTA+AGG | - | chr8_4:8203596-8203615 | Msa1311410:intron | 25.0% |
| ! | AAATAATCCATAACATTACC+AGG | - | chr8_4:8203713-8203732 | Msa1311410:intron | 25.0% |
| ! | CATAAAATCTGGAGAAATAT+AGG | + | chr8_4:8203848-8203867 | None:intergenic | 25.0% |
| !!! | TTGCTATCATTTAAGTTTTC+TGG | - | chr8_4:8203871-8203890 | Msa1311410:CDS | 25.0% |
| ! | GTTATACTAAACTATAGCAT+GGG | + | chr8_4:8203907-8203926 | None:intergenic | 25.0% |
| ! | AGTTATACTAAACTATAGCA+TGG | + | chr8_4:8203908-8203927 | None:intergenic | 25.0% |
| !! | ATAGTTTAGTATAACTTGCA+TGG | - | chr8_4:8203912-8203931 | Msa1311410:intron | 25.0% |
| !!! | TACAAATTTCTGGTTTATGA+CGG | - | chr8_4:8203975-8203994 | Msa1311410:intron | 25.0% |
| !!! | CTCTTTCATATTTCAAGTTA+GGG | - | chr8_4:8204213-8204232 | Msa1311410:intron | 25.0% |
| !! | TCTTCAACTAACATTTTATG+TGG | + | chr8_4:8204400-8204419 | None:intergenic | 25.0% |
| ! | TCATTCATTGTATGACTTTA+AGG | + | chr8_4:8204592-8204611 | None:intergenic | 25.0% |
| !! | TACAATGAATGATTTGTGAT+TGG | - | chr8_4:8204600-8204619 | Msa1311410:intron | 25.0% |
| !!! | ATAATCTCATTTTGGAAATG+AGG | - | chr8_4:8204660-8204679 | Msa1311410:intron | 25.0% |
| ! | AAGCAATACAAGCTAAAAAA+TGG | + | chr8_4:8204769-8204788 | None:intergenic | 25.0% |
| !!! | TCGTAATGAAAGCATTATTA+AGG | + | chr8_4:8205012-8205031 | None:intergenic | 25.0% |
| ! | TAATAATGCTTTCATTACGA+AGG | - | chr8_4:8205012-8205031 | Msa1311410:intron | 25.0% |
| ! | TTTGAATGTTGAAGAAGTAC+TGG | - | chr8_4:8201141-8201160 | Msa1311410:intron | 30.0% |
| ! | TTTTCTTCGTTCCAACAATT+GGG | + | chr8_4:8201253-8201272 | None:intergenic | 30.0% |
| CATTTCATTCCAACAAAAAG+TGG | + | chr8_4:8201309-8201328 | None:intergenic | 30.0% | |
| TTCTGTAGTTATAGTTTCCT+TGG | - | chr8_4:8201358-8201377 | Msa1311410:intron | 30.0% | |
| TCTGTAGTTATAGTTTCCTT+GGG | - | chr8_4:8201359-8201378 | Msa1311410:intron | 30.0% | |
| ! | ACTGTTCACTGATTGTTAAT+AGG | - | chr8_4:8201509-8201528 | Msa1311410:CDS | 30.0% |
| ! | TAAAGTGAAAGTACACTATC+GGG | - | chr8_4:8201790-8201809 | Msa1311410:intron | 30.0% |
| GGAACTAAAAGAAAATGAAG+GGG | - | chr8_4:8201896-8201915 | Msa1311410:intron | 30.0% | |
| !!! | ATTTTGAAGTTTCCCCTATT+TGG | + | chr8_4:8201973-8201992 | None:intergenic | 30.0% |
| GTTCATGAATTTAATAAGGC+AGG | - | chr8_4:8201993-8202012 | Msa1311410:intron | 30.0% | |
| ATAGAGAACATGTTGTCAAT+GGG | + | chr8_4:8202281-8202300 | None:intergenic | 30.0% | |
| TTACCCATCTCATTAAAAAC+TGG | + | chr8_4:8202344-8202363 | None:intergenic | 30.0% | |
| AACATAGGAAATTAACCATC+AGG | + | chr8_4:8202372-8202391 | None:intergenic | 30.0% | |
| GGTTAATTTCCTATGTTGTT+TGG | - | chr8_4:8202375-8202394 | Msa1311410:intron | 30.0% | |
| ! | TATTTGTTAGGTTACTACCA+AGG | + | chr8_4:8202471-8202490 | None:intergenic | 30.0% |
| TGTGATTGTGAGTATGTTAT+AGG | + | chr8_4:8202531-8202550 | None:intergenic | 30.0% | |
| ! | AATTGATAGCTGTCAACATA+AGG | + | chr8_4:8202604-8202623 | None:intergenic | 30.0% |
| !!! | AAATTTTGACTTGTCTTTGC+AGG | - | chr8_4:8202754-8202773 | Msa1311410:intron | 30.0% |
| !!! | AATTTTGACTTGTCTTTGCA+GGG | - | chr8_4:8202755-8202774 | Msa1311410:intron | 30.0% |
| ! | CTTAAGATTTTACTCCCTTT+TGG | - | chr8_4:8203498-8203517 | Msa1311410:intron | 30.0% |
| TTACACCATATCAATACGAA+TGG | - | chr8_4:8203534-8203553 | Msa1311410:intron | 30.0% | |
| TACACCATATCAATACGAAT+GGG | - | chr8_4:8203535-8203554 | Msa1311410:intron | 30.0% | |
| AAATGACAGACGTATCTAAT+GGG | - | chr8_4:8203779-8203798 | Msa1311410:intron | 30.0% | |
| GATAGCAAGAACATAAAATC+TGG | + | chr8_4:8203859-8203878 | None:intergenic | 30.0% | |
| !! | ACAAATTTCTGGTTTATGAC+GGG | - | chr8_4:8203976-8203995 | Msa1311410:intron | 30.0% |
| CAATCATGTAATCATCTATC+TGG | + | chr8_4:8204009-8204028 | None:intergenic | 30.0% | |
| GATAAATTACCTGGAATAGT+GGG | + | chr8_4:8204143-8204162 | None:intergenic | 30.0% | |
| TGATAAATTACCTGGAATAG+TGG | + | chr8_4:8204144-8204163 | None:intergenic | 30.0% | |
| TATCAGCTTGATAAATTACC+TGG | + | chr8_4:8204152-8204171 | None:intergenic | 30.0% | |
| CCTAACTTGAAATATGAAAG+AGG | + | chr8_4:8204215-8204234 | None:intergenic | 30.0% | |
| !! | CCTCTTTCATATTTCAAGTT+AGG | - | chr8_4:8204212-8204231 | Msa1311410:intron | 30.0% |
| GCTAAAAAATGGAATAGTGA+TGG | + | chr8_4:8204758-8204777 | None:intergenic | 30.0% | |
| ! | AGTTGGTATGTATAAAATGC+AGG | + | chr8_4:8204793-8204812 | None:intergenic | 30.0% |
| ! | TAAATGGAAGACTAGACTTT+TGG | - | chr8_4:8204961-8204980 | Msa1311410:intron | 30.0% |
| TGTTATCTAACTCTTAAGTG+AGG | - | chr8_4:8205038-8205057 | Msa1311410:intron | 30.0% | |
| GTCATTGCATCAACATTACT+AGG | - | chr8_4:8200522-8200541 | Msa1311410:three_prime_UTR | 35.0% | |
| GTGATGTGTTATGTGAACAA+TGG | + | chr8_4:8200584-8200603 | None:intergenic | 35.0% | |
| ! | CTTTTCTTCGTTCCAACAAT+TGG | + | chr8_4:8201254-8201273 | None:intergenic | 35.0% |
| CTGTAGTTATAGTTTCCTTG+GGG | - | chr8_4:8201360-8201379 | Msa1311410:intron | 35.0% | |
| TGTAGTTATAGTTTCCTTGG+GGG | - | chr8_4:8201361-8201380 | Msa1311410:intron | 35.0% | |
| ! | ACCTAATTTGGGTTAAAGTG+CGG | - | chr8_4:8201457-8201476 | Msa1311410:intron | 35.0% |
| !! | GATGTTGGTTTATACTGCAA+TGG | + | chr8_4:8201743-8201762 | None:intergenic | 35.0% |
| CTAAAAGAAAATGAAGGGGA+AGG | - | chr8_4:8201900-8201919 | Msa1311410:intron | 35.0% | |
| !! | TACTTTAAGACCGTCCAAAT+AGG | - | chr8_4:8201956-8201975 | Msa1311410:intron | 35.0% |
| !! | ACTTTAAGACCGTCCAAATA+GGG | - | chr8_4:8201957-8201976 | Msa1311410:intron | 35.0% |
| AATGGATGAAAGGTTACAAG+AGG | + | chr8_4:8202056-8202075 | None:intergenic | 35.0% | |
| AATAGACGAGAATGGATGAA+AGG | + | chr8_4:8202066-8202085 | None:intergenic | 35.0% | |
| AGCCTTTCAAATTAAAGGAG+AGG | + | chr8_4:8202230-8202249 | None:intergenic | 35.0% | |
| CATAGAGAACATGTTGTCAA+TGG | + | chr8_4:8202282-8202301 | None:intergenic | 35.0% | |
| CATTGACAACATGTTCTCTA+TGG | - | chr8_4:8202280-8202299 | Msa1311410:intron | 35.0% | |
| CTCAATGGCTAGTATTTGTT+AGG | + | chr8_4:8202483-8202502 | None:intergenic | 35.0% | |
| AATTCCCATTGTTCTCTCAA+TGG | + | chr8_4:8202498-8202517 | None:intergenic | 35.0% | |
| TTGAGAGAACAATGGGAATT+TGG | - | chr8_4:8202498-8202517 | Msa1311410:intron | 35.0% | |
| AGAACAATGGGAATTTGGTA+AGG | - | chr8_4:8202503-8202522 | Msa1311410:intron | 35.0% | |
| CACAGTATCAAAATGGCTTT+AGG | + | chr8_4:8202565-8202584 | None:intergenic | 35.0% | |
| CAGCTATCAATTATTTCGAG+TGG | - | chr8_4:8202612-8202631 | Msa1311410:intron | 35.0% | |
| AGAATCGAAAACAGTTCCAT+CGG | + | chr8_4:8202789-8202808 | None:intergenic | 35.0% | |
| !! | AACCCAATTGATTTTGAGCT+TGG | - | chr8_4:8202824-8202843 | Msa1311410:CDS | 35.0% |
| CACCAAGCTCAAAATCAATT+GGG | + | chr8_4:8202829-8202848 | None:intergenic | 35.0% | |
| ATCATTGTAGCACATGGAAA+AGG | - | chr8_4:8203039-8203058 | Msa1311410:intron | 35.0% | |
| AAGTTCTTTGAATTTCTCCC+CGG | - | chr8_4:8203082-8203101 | Msa1311410:intron | 35.0% | |
| !! | AATGGCTGATTTGTAACATG+TGG | - | chr8_4:8203113-8203132 | Msa1311410:intron | 35.0% |
| ! | GTTTTGTCTGTAGTTTCTCT+AGG | + | chr8_4:8203286-8203305 | None:intergenic | 35.0% |
| TACAGACAAAACCATCAAGA+AGG | - | chr8_4:8203294-8203313 | Msa1311410:intron | 35.0% | |
| ! | CAAGCTTTATCCCATTAAGT+GGG | - | chr8_4:8203382-8203401 | Msa1311410:intron | 35.0% |
| ! | AAGCTTTATCCCATTAAGTG+GGG | - | chr8_4:8203383-8203402 | Msa1311410:intron | 35.0% |
| ! | TAAAGCCTTTTCCAACAAAG+GGG | + | chr8_4:8203466-8203485 | None:intergenic | 35.0% |
| ! | CTAAAGCCTTTTCCAACAAA+GGG | + | chr8_4:8203467-8203486 | None:intergenic | 35.0% |
| ! | TGTTCCCATTCGTATTGATA+TGG | + | chr8_4:8203542-8203561 | None:intergenic | 35.0% |
| ATCAATACGAATGGGAACAA+TGG | - | chr8_4:8203543-8203562 | Msa1311410:intron | 35.0% | |
| AGCATACAGTTCACATTCTT+TGG | + | chr8_4:8203574-8203593 | None:intergenic | 35.0% | |
| ! | GATCAATCCTGGTAATGTTA+TGG | + | chr8_4:8203723-8203742 | None:intergenic | 35.0% |
| TGTATTTGACTGATCAATCC+TGG | + | chr8_4:8203734-8203753 | None:intergenic | 35.0% | |
| GATCAGTCAAATACAAACAC+AGG | - | chr8_4:8203739-8203758 | Msa1311410:intron | 35.0% | |
| GAAATGACAGACGTATCTAA+TGG | - | chr8_4:8203778-8203797 | Msa1311410:intron | 35.0% | |
| TAAACTATAGCATGGGTATC+TGG | + | chr8_4:8203900-8203919 | None:intergenic | 35.0% | |
| CTGAAAATACCAGCAAAACT+CGG | - | chr8_4:8204095-8204114 | Msa1311410:intron | 35.0% | |
| AATCTGGAAGTTCAGGAAAA+CGG | + | chr8_4:8204270-8204289 | None:intergenic | 35.0% | |
| GTAGAATAATCTGGAAGTTC+AGG | + | chr8_4:8204277-8204296 | None:intergenic | 35.0% | |
| TTCCAGATTATTCTACAGTC+TGG | - | chr8_4:8204281-8204300 | Msa1311410:intron | 35.0% | |
| TACCAGACTGTAGAATAATC+TGG | + | chr8_4:8204286-8204305 | None:intergenic | 35.0% | |
| CTGAATTACATTAGCAGCTT+TGG | - | chr8_4:8204349-8204368 | Msa1311410:intron | 35.0% | |
| CAACAATTGTGATTGATCGA+AGG | + | chr8_4:8204535-8204554 | None:intergenic | 35.0% | |
| TATATTTGACACTGAGCTTG+TGG | - | chr8_4:8204877-8204896 | Msa1311410:CDS | 35.0% | |
| ATATTTGACACTGAGCTTGT+GGG | - | chr8_4:8204878-8204897 | Msa1311410:CDS | 35.0% | |
| ! | GCTTTCGTGAGAATTTTCAT+TGG | - | chr8_4:8205131-8205150 | Msa1311410:CDS | 35.0% |
| CTTAGTTTCTGCCAAGAAAG+AGG | - | chr8_4:8200727-8200746 | Msa1311410:CDS | 40.0% | |
| !! | CTTTTGATCAAAGGTGTGTC+CGG | + | chr8_4:8201070-8201089 | None:intergenic | 40.0% |
| CCAACAATTGGGAATCATCA+AGG | + | chr8_4:8201242-8201261 | None:intergenic | 40.0% | |
| ! | CCTTGATGATTCCCAATTGT+TGG | - | chr8_4:8201239-8201258 | Msa1311410:intron | 40.0% |
| !!! | CATGGACATCCACTTTTTGT+TGG | - | chr8_4:8201297-8201316 | Msa1311410:intron | 40.0% |
| AATACTCTTTCTAACCCCCA+AGG | + | chr8_4:8201378-8201397 | None:intergenic | 40.0% | |
| AAATTAGCTGCATCGTAGGT+CGG | + | chr8_4:8201633-8201652 | None:intergenic | 40.0% | |
| GTGAAAATTAGCTGCATCGT+AGG | + | chr8_4:8201637-8201656 | None:intergenic | 40.0% | |
| ACCAACATCATGTGAAGTTC+AGG | - | chr8_4:8201754-8201773 | Msa1311410:intron | 40.0% | |
| AAGCTTAAGCAGTAACCTCT+AGG | - | chr8_4:8201846-8201865 | Msa1311410:intron | 40.0% | |
| AGCTTAAGCAGTAACCTCTA+GGG | - | chr8_4:8201847-8201866 | Msa1311410:intron | 40.0% | |
| TCTAGGGAATGTTTGTGAGA+GGG | - | chr8_4:8201863-8201882 | Msa1311410:intron | 40.0% | |
| !! | CTTTAAGACCGTCCAAATAG+GGG | - | chr8_4:8201958-8201977 | Msa1311410:intron | 40.0% |
| TGAAGTTTCCCCTATTTGGA+CGG | + | chr8_4:8201969-8201988 | None:intergenic | 40.0% | |
| AATATAGGCACAACATCCCA+TGG | - | chr8_4:8202135-8202154 | Msa1311410:intron | 40.0% | |
| !! | GGCCTCTCCTTTAATTTGAA+AGG | - | chr8_4:8202225-8202244 | Msa1311410:intron | 40.0% |
| ACTTACTTCTTGATCCTCCT+TGG | - | chr8_4:8202451-8202470 | Msa1311410:intron | 40.0% | |
| TTGTTAGGTTACTACCAAGG+AGG | + | chr8_4:8202468-8202487 | None:intergenic | 40.0% | |
| ACTAGCCATTGAGAGAACAA+TGG | - | chr8_4:8202490-8202509 | Msa1311410:intron | 40.0% | |
| CTAGCCATTGAGAGAACAAT+GGG | - | chr8_4:8202491-8202510 | Msa1311410:intron | 40.0% | |
| GATAGCTGTCAACATAAGGT+AGG | + | chr8_4:8202600-8202619 | None:intergenic | 40.0% | |
| TGTTCTTGTGATGACTGATC+AGG | - | chr8_4:8202685-8202704 | Msa1311410:intron | 40.0% | |
| GTTCTTGTGATGACTGATCA+GGG | - | chr8_4:8202686-8202705 | Msa1311410:intron | 40.0% | |
| TTCTTGTGATGACTGATCAG+GGG | - | chr8_4:8202687-8202706 | Msa1311410:intron | 40.0% | |
| CCACCAAGCTCAAAATCAAT+TGG | + | chr8_4:8202830-8202849 | None:intergenic | 40.0% | |
| !! | CCAATTGATTTTGAGCTTGG+TGG | - | chr8_4:8202827-8202846 | Msa1311410:CDS | 40.0% |
| !! | ATTGATTTTGAGCTTGGTGG+TGG | - | chr8_4:8202830-8202849 | Msa1311410:CDS | 40.0% |
| TTCCATGTGCTACAATGATC+TGG | + | chr8_4:8203038-8203057 | None:intergenic | 40.0% | |
| !! | AATCAGCCATTTTCCTTGTC+CGG | + | chr8_4:8203104-8203123 | None:intergenic | 40.0% |
| AATTTACCCTCTCCTTACAC+AGG | + | chr8_4:8203226-8203245 | None:intergenic | 40.0% | |
| TGTGTAAGGAGAGGGTAAAT+TGG | - | chr8_4:8203225-8203244 | Msa1311410:intron | 40.0% | |
| TAAGGAGAGGGTAAATTGGA+TGG | - | chr8_4:8203229-8203248 | Msa1311410:intron | 40.0% | |
| TTGTCTGTAGTTTCTCTAGG+TGG | + | chr8_4:8203283-8203302 | None:intergenic | 40.0% | |
| TTGTTGCCTGTCTTGAATCA+TGG | + | chr8_4:8203346-8203365 | None:intergenic | 40.0% | |
| CCACTTAATGGGATAAAGCT+TGG | + | chr8_4:8203384-8203403 | None:intergenic | 40.0% | |
| ! | CCAAGCTTTATCCCATTAAG+TGG | - | chr8_4:8203381-8203400 | Msa1311410:intron | 40.0% |
| TTTATCCCATTAAGTGGGGT+CGG | - | chr8_4:8203387-8203406 | Msa1311410:intron | 40.0% | |
| ! | CGGCTAACACGATTTAAGAT+AGG | - | chr8_4:8203407-8203426 | Msa1311410:intron | 40.0% |
| CAACAAAGGGGTTGACTAAA+TGG | + | chr8_4:8203454-8203473 | None:intergenic | 40.0% | |
| CATTTAGTCAACCCCTTTGT+TGG | - | chr8_4:8203452-8203471 | Msa1311410:intron | 40.0% | |
| ! | GCTAAAGCCTTTTCCAACAA+AGG | + | chr8_4:8203468-8203487 | None:intergenic | 40.0% |
| ATGATTGTTCCTCCTCTTCT+TGG | - | chr8_4:8204022-8204041 | Msa1311410:intron | 40.0% | |
| GACACATTCCCAATAATCCT+TGG | + | chr8_4:8204058-8204077 | None:intergenic | 40.0% | |
| GGATTATTGGGAATGTGTCT+TGG | - | chr8_4:8204059-8204078 | Msa1311410:intron | 40.0% | |
| !! | AATTACCTGGAATAGTGGGT+GGG | + | chr8_4:8204139-8204158 | None:intergenic | 40.0% |
| ! | AAATTACCTGGAATAGTGGG+TGG | + | chr8_4:8204140-8204159 | None:intergenic | 40.0% |
| ATCTGGAAGTTCAGGAAAAC+GGG | + | chr8_4:8204269-8204288 | None:intergenic | 40.0% | |
| !!! | GCAGCTTTGGTTTTGATTGT+TGG | - | chr8_4:8204362-8204381 | Msa1311410:intron | 40.0% |
| !!! | TGGTTTTGATTGTTGGCTCT+AGG | - | chr8_4:8204369-8204388 | Msa1311410:intron | 40.0% |
| TCCAACGAGAGAGAAACACT+TGG | - | chr8_4:8200440-8200459 | Msa1311410:three_prime_UTR | 45.0% | |
| ACCAAGTGTTTCTCTCTCGT+TGG | + | chr8_4:8200444-8200463 | None:intergenic | 45.0% | |
| CTTGACATCAGCCTCTTTCT+TGG | + | chr8_4:8200741-8200760 | None:intergenic | 45.0% | |
| CAAGAAAGAGGCTGATGTCA+AGG | - | chr8_4:8200739-8200758 | Msa1311410:CDS | 45.0% | |
| GATGTCAAGGAGTTGCAGAT+TGG | - | chr8_4:8200752-8200771 | Msa1311410:CDS | 45.0% | |
| GTCAATGTTGTCTCAGACAC+CGG | - | chr8_4:8201048-8201067 | Msa1311410:intron | 45.0% | |
| GCCGCACTTTAACCCAAATT+AGG | + | chr8_4:8201461-8201480 | None:intergenic | 45.0% | |
| ATCTTGTGACCTTGCTAGCA+AGG | + | chr8_4:8201489-8201508 | None:intergenic | 45.0% | |
| AATTAGCTGCATCGTAGGTC+GGG | + | chr8_4:8201632-8201651 | None:intergenic | 45.0% | |
| GCCTGAACTTCACATGATGT+TGG | + | chr8_4:8201758-8201777 | None:intergenic | 45.0% | |
| TGTGAAGTTCAGGCACACAA+AGG | - | chr8_4:8201764-8201783 | Msa1311410:intron | 45.0% | |
| CTCTCACAAACATTCCCTAG+AGG | + | chr8_4:8201864-8201883 | None:intergenic | 45.0% | |
| ! | CTCTAGGGAATGTTTGTGAG+AGG | - | chr8_4:8201862-8201881 | Msa1311410:intron | 45.0% |
| CTAGGGAATGTTTGTGAGAG+GGG | - | chr8_4:8201864-8201883 | Msa1311410:intron | 45.0% | |
| GGAAGGAAAGAGAAGAGGAT+GGG | - | chr8_4:8201917-8201936 | Msa1311410:intron | 45.0% | |
| GTGGTCAGCTAAATGCTTTG+AGG | - | chr8_4:8202631-8202650 | Msa1311410:intron | 45.0% | |
| CGTTGAACTAGCTGTTGTGT+TGG | - | chr8_4:8202921-8202940 | Msa1311410:intron | 45.0% | |
| TGCCAGATCATTGTAGCACA+TGG | - | chr8_4:8203033-8203052 | Msa1311410:intron | 45.0% | |
| TTTGAATTTCTCCCCGGACA+AGG | - | chr8_4:8203088-8203107 | Msa1311410:intron | 45.0% | |
| !! | ATCAGCCATTTTCCTTGTCC+GGG | + | chr8_4:8203103-8203122 | None:intergenic | 45.0% |
| GCTTAGTAGAAGCCTGTGTA+AGG | - | chr8_4:8203211-8203230 | Msa1311410:intron | 45.0% | |
| TAGAAGCCTGTGTAAGGAGA+GGG | - | chr8_4:8203217-8203236 | Msa1311410:intron | 45.0% | |
| GAGAGGGTAAATTGGATGGA+GGG | - | chr8_4:8203233-8203252 | Msa1311410:intron | 45.0% | |
| GTCAACCCCTTTGTTGGAAA+AGG | - | chr8_4:8203458-8203477 | Msa1311410:intron | 45.0% | |
| TGACAGACGTATCTAATGGG+AGG | - | chr8_4:8203782-8203801 | Msa1311410:intron | 45.0% | |
| ACTATAGCATGGGTATCTGG+CGG | + | chr8_4:8203897-8203916 | None:intergenic | 45.0% | |
| AGGATGGGACCAAGGATTAT+TGG | - | chr8_4:8204046-8204065 | Msa1311410:intron | 45.0% | |
| GGATGGGACCAAGGATTATT+GGG | - | chr8_4:8204047-8204066 | Msa1311410:intron | 45.0% | |
| ATACCAGCAAAACTCGGCTA+CGG | - | chr8_4:8204101-8204120 | Msa1311410:intron | 45.0% | |
| !! | ATTACCTGGAATAGTGGGTG+GGG | + | chr8_4:8204138-8204157 | None:intergenic | 45.0% |
| GGAGTTGCAGATTGGCGTTA+AGG | - | chr8_4:8200760-8200779 | Msa1311410:CDS | 50.0% | |
| CGGCAAAAACCTTGCTAGCA+AGG | - | chr8_4:8201477-8201496 | Msa1311410:intron | 50.0% | |
| GGAATGTTTGTGAGAGGGGA+AGG | - | chr8_4:8201868-8201887 | Msa1311410:intron | 50.0% | |
| TTGTGAGAGGGGAAGGATCA+AGG | - | chr8_4:8201875-8201894 | Msa1311410:intron | 50.0% | |
| GAAGGGGAAGGAAAGAGAAG+AGG | - | chr8_4:8201912-8201931 | Msa1311410:intron | 50.0% | |
| GGGAAGGAAAGAGAAGAGGA+TGG | - | chr8_4:8201916-8201935 | Msa1311410:intron | 50.0% | |
| AGATGGGTAATGTCGCCTGA+TGG | - | chr8_4:8202354-8202373 | Msa1311410:intron | 50.0% | |
| TTGCAGGGAAAACTCACCGA+TGG | - | chr8_4:8202770-8202789 | Msa1311410:intron | 50.0% | |
| ! | GGTGGTGGTCAAGTGATCAA+AGG | - | chr8_4:8202845-8202864 | Msa1311410:CDS | 50.0% |
| TTCTCCCCGGACAAGGAAAA+TGG | - | chr8_4:8203095-8203114 | Msa1311410:intron | 50.0% | |
| !! | TCAGCCATTTTCCTTGTCCG+GGG | + | chr8_4:8203102-8203121 | None:intergenic | 50.0% |
| GTAGAAGCCTGTGTAAGGAG+AGG | - | chr8_4:8203216-8203235 | Msa1311410:intron | 50.0% | |
| GGAGAGGGTAAATTGGATGG+AGG | - | chr8_4:8203232-8203251 | Msa1311410:intron | 50.0% | |
| CACCTGCCATGATTCAAGAC+AGG | - | chr8_4:8203337-8203356 | Msa1311410:intron | 50.0% | |
| TGCCTGTCTTGAATCATGGC+AGG | + | chr8_4:8203342-8203361 | None:intergenic | 50.0% | |
| GTTAGCCGACCCCACTTAAT+GGG | + | chr8_4:8203395-8203414 | None:intergenic | 50.0% | |
| TGTTAGCCGACCCCACTTAA+TGG | + | chr8_4:8203396-8203415 | None:intergenic | 50.0% | |
| TTGTTCCTCCTCTTCTTGGC+AGG | - | chr8_4:8204026-8204045 | Msa1311410:intron | 50.0% | |
| ! | TGACACTGAGTTGAACCTGC+AGG | - | chr8_4:8204842-8204861 | Msa1311410:intron | 50.0% |
| TCCTCCTCTTCTTGGCAGGA+TGG | - | chr8_4:8204030-8204049 | Msa1311410:intron | 55.0% | |
| CCTCCTCTTCTTGGCAGGAT+GGG | - | chr8_4:8204031-8204050 | Msa1311410:intron | 55.0% | |
| TTCTTGGCAGGATGGGACCA+AGG | - | chr8_4:8204038-8204057 | Msa1311410:intron | 55.0% | |
| ! | TCTCCGTAGCCGAGTTTTGC+TGG | + | chr8_4:8204107-8204126 | None:intergenic | 55.0% |
| AAAACTCGGCTACGGAGAGC+AGG | - | chr8_4:8204109-8204128 | Msa1311410:intron | 55.0% | |
| AAACTCGGCTACGGAGAGCA+GGG | - | chr8_4:8204110-8204129 | Msa1311410:intron | 55.0% | |
| ! | CACTGAGTTGAACCTGCAGG+CGG | - | chr8_4:8204845-8204864 | Msa1311410:intron | 55.0% |
| ! | ATAAGTGTTGCACCGCCTGC+AGG | + | chr8_4:8204860-8204879 | None:intergenic | 55.0% |
| CCCATCCTGCCAAGAAGAGG+AGG | + | chr8_4:8204034-8204053 | None:intergenic | 60.0% | |
| GGTCCCATCCTGCCAAGAAG+AGG | + | chr8_4:8204037-8204056 | None:intergenic | 60.0% | |
| GGTTCCCCACCCACTATTCC+AGG | - | chr8_4:8204131-8204150 | Msa1311410:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 8200439 | 8205213 | 8200439 | ID=Msa1311410;Name=Msa1311410 |
| chr8_4 | mRNA | 8200439 | 8205213 | 8200439 | ID=Msa1311410-mRNA-1;Parent=Msa1311410;Name=Msa1311410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53|1|1|1|1|1|6|264|148 |
| chr8_4 | exon | 8200439 | 8200788 | 8200439 | ID=Msa1311410-mRNA-1:exon:3075;Parent=Msa1311410-mRNA-1 |
| chr8_4 | exon | 8201500 | 8201604 | 8201500 | ID=Msa1311410-mRNA-1:exon:3074;Parent=Msa1311410-mRNA-1 |
| chr8_4 | exon | 8202786 | 8202876 | 8202786 | ID=Msa1311410-mRNA-1:exon:3073;Parent=Msa1311410-mRNA-1 |
| chr8_4 | exon | 8203841 | 8203903 | 8203841 | ID=Msa1311410-mRNA-1:exon:3072;Parent=Msa1311410-mRNA-1 |
| chr8_4 | exon | 8204871 | 8204920 | 8204871 | ID=Msa1311410-mRNA-1:exon:3071;Parent=Msa1311410-mRNA-1 |
| chr8_4 | exon | 8205109 | 8205213 | 8205109 | ID=Msa1311410-mRNA-1:exon:3070;Parent=Msa1311410-mRNA-1 |
| chr8_4 | five_prime_UTR | 8205161 | 8205213 | 8205161 | ID=Msa1311410-mRNA-1:five_prime_utr;Parent=Msa1311410-mRNA-1 |
| chr8_4 | CDS | 8205109 | 8205160 | 8205109 | ID=Msa1311410-mRNA-1:cds;Parent=Msa1311410-mRNA-1 |
| chr8_4 | CDS | 8204871 | 8204920 | 8204871 | ID=Msa1311410-mRNA-1:cds;Parent=Msa1311410-mRNA-1 |
| chr8_4 | CDS | 8203841 | 8203903 | 8203841 | ID=Msa1311410-mRNA-1:cds;Parent=Msa1311410-mRNA-1 |
| chr8_4 | CDS | 8202786 | 8202876 | 8202786 | ID=Msa1311410-mRNA-1:cds;Parent=Msa1311410-mRNA-1 |
| chr8_4 | CDS | 8201500 | 8201604 | 8201500 | ID=Msa1311410-mRNA-1:cds;Parent=Msa1311410-mRNA-1 |
| chr8_4 | CDS | 8200703 | 8200788 | 8200703 | ID=Msa1311410-mRNA-1:cds;Parent=Msa1311410-mRNA-1 |
| chr8_4 | three_prime_UTR | 8200439 | 8200702 | 8200439 | ID=Msa1311410-mRNA-1:three_prime_utr;Parent=Msa1311410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
