Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230600 | XP_003626947.1 | 97.351 | 151 | 1 | 1 | 1 | 148 | 1 | 151 | 9.38e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230600 | sp|Q41649|FKB15_VICFA | 93.233 | 133 | 9 | 0 | 14 | 146 | 16 | 148 | 9.93e-89 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230600 | G7LF65 | 97.351 | 151 | 1 | 1 | 1 | 148 | 1 | 151 | 4.48e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0656050 | Msa1230600 | 0.819158 | 1.345290e-52 | -8.615850e-47 |
| Msa0812590 | Msa1230600 | 0.839481 | 1.544379e-57 | -8.615850e-47 |
| Msa1230600 | Msa1311800 | 0.800308 | 1.531555e-48 | -8.615850e-47 |
| Msa0377600 | Msa1230600 | 0.824574 | 7.496538e-54 | -8.615850e-47 |
| Msa0527170 | Msa1230600 | 0.998895 | 7.618319e-281 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230600 | MtrunA17_Chr8g0339171 | 97.351 | 151 | 1 | 1 | 1 | 148 | 1 | 151 | 8.63e-104 | 293 |
| Msa1230600 | MtrunA17_Chr7g0234801 | 58.140 | 86 | 36 | 0 | 47 | 132 | 52 | 137 | 5.42e-28 | 107 |
| Msa1230600 | MtrunA17_Chr8g0339141 | 59.302 | 86 | 35 | 0 | 47 | 132 | 58 | 143 | 6.30e-27 | 105 |
| Msa1230600 | MtrunA17_Chr8g0377771 | 58.140 | 86 | 36 | 0 | 47 | 132 | 56 | 141 | 4.34e-26 | 102 |
| Msa1230600 | MtrunA17_Chr7g0255551 | 50.000 | 86 | 43 | 0 | 47 | 132 | 39 | 124 | 7.81e-25 | 99.0 |
| Msa1230600 | MtrunA17_Chr4g0052911 | 47.525 | 101 | 42 | 2 | 43 | 132 | 137 | 237 | 3.73e-23 | 90.9 |
| Msa1230600 | MtrunA17_Chr5g0435521 | 42.718 | 103 | 52 | 2 | 50 | 145 | 35 | 137 | 1.81e-20 | 82.8 |
| Msa1230600 | MtrunA17_Chr8g0382711 | 31.481 | 162 | 82 | 3 | 9 | 141 | 52 | 213 | 3.84e-20 | 82.4 |
| Msa1230600 | MtrunA17_Chr5g0396231 | 43.165 | 139 | 60 | 6 | 11 | 134 | 365 | 499 | 1.05e-19 | 84.3 |
| Msa1230600 | MtrunA17_Chr8g0352971 | 50.575 | 87 | 41 | 2 | 48 | 132 | 18 | 104 | 1.43e-18 | 80.9 |
| Msa1230600 | MtrunA17_Chr4g0014351 | 41.573 | 89 | 52 | 0 | 47 | 135 | 781 | 869 | 2.43e-15 | 72.0 |
| Msa1230600 | MtrunA17_Chr4g0033841 | 38.000 | 100 | 58 | 2 | 47 | 142 | 130 | 229 | 2.67e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230600 | AT5G48580.1 | 75.714 | 140 | 34 | 0 | 4 | 143 | 9 | 148 | 3.28e-75 | 221 |
| Msa1230600 | AT3G25220.1 | 79.845 | 129 | 26 | 0 | 20 | 148 | 25 | 153 | 2.71e-73 | 216 |
| Msa1230600 | AT3G25230.1 | 61.628 | 86 | 33 | 0 | 47 | 132 | 57 | 142 | 2.43e-28 | 109 |
| Msa1230600 | AT3G25230.2 | 61.628 | 86 | 33 | 0 | 47 | 132 | 57 | 142 | 2.90e-28 | 108 |
| Msa1230600 | AT5G48570.1 | 58.621 | 87 | 36 | 0 | 47 | 133 | 65 | 151 | 7.93e-27 | 105 |
| Msa1230600 | AT5G45680.1 | 47.059 | 102 | 43 | 2 | 43 | 133 | 105 | 206 | 3.14e-24 | 93.6 |
| Msa1230600 | AT4G39710.1 | 34.375 | 160 | 75 | 4 | 2 | 132 | 50 | 208 | 5.57e-21 | 85.1 |
| Msa1230600 | AT4G39710.3 | 34.375 | 160 | 75 | 4 | 2 | 132 | 50 | 208 | 5.57e-21 | 85.1 |
| Msa1230600 | AT3G55520.2 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 1.03e-19 | 81.3 |
| Msa1230600 | AT3G55520.3 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 1.03e-19 | 81.3 |
| Msa1230600 | AT3G55520.1 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 1.03e-19 | 81.3 |
| Msa1230600 | AT4G25340.1 | 46.364 | 110 | 52 | 4 | 26 | 134 | 373 | 476 | 7.86e-19 | 82.0 |
| Msa1230600 | AT5G05420.1 | 47.312 | 93 | 46 | 3 | 43 | 134 | 52 | 142 | 1.01e-18 | 77.4 |
| Msa1230600 | AT3G12340.3 | 43.478 | 92 | 50 | 2 | 44 | 134 | 287 | 377 | 3.56e-15 | 71.6 |
| Msa1230600 | AT3G12340.2 | 43.478 | 92 | 50 | 2 | 44 | 134 | 287 | 377 | 3.56e-15 | 71.6 |
| Msa1230600 | AT3G12340.1 | 43.478 | 92 | 50 | 2 | 44 | 134 | 408 | 498 | 4.38e-15 | 71.6 |
| Msa1230600 | AT2G43560.1 | 40.449 | 89 | 49 | 2 | 47 | 131 | 124 | 212 | 2.36e-13 | 65.1 |
| Msa1230600 | AT2G43560.2 | 40.449 | 89 | 49 | 2 | 47 | 131 | 68 | 156 | 2.58e-13 | 63.9 |
| Msa1230600 | AT4G39710.2 | 32.000 | 100 | 50 | 1 | 12 | 93 | 59 | 158 | 1.03e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGATGTATTTAATTTAT+AGG | 0.174496 | 8_2:+6652658 | None:intergenic |
| TTTAGACAAATCAAAATTAA+TGG | 0.209015 | 8_2:-6652800 | Msa1230600:exon |
| ATAAATTAAATACATCTATT+TGG | 0.214425 | 8_2:-6652655 | Msa1230600:three_prime_UTR |
| AGGATGGGACCAAGGATTAT+TGG | 0.270076 | 8_2:-6653717 | Msa1230600:CDS |
| CAAGCTCGGTGTCAAATATA+AGG | 0.271808 | 8_2:+6652871 | None:intergenic |
| CGTGACATCAGCCTCTTTCT+TGG | 0.287375 | 8_2:+6657124 | None:intergenic |
| TGGTAATGAAAGCATTATTA+AGG | 0.297295 | 8_2:+6652735 | None:intergenic |
| ATAGATGTATTTAATTTATA+GGG | 0.299832 | 8_2:+6652659 | None:intergenic |
| TTAATGGAAGACTAGACTTT+TGG | 0.305728 | 8_2:-6652784 | Msa1230600:three_prime_UTR |
| ACCAACATCATGTGAAGTTC+AGG | 0.407504 | 8_2:-6656194 | Msa1230600:CDS |
| GGATGGGACCAAGGATTATT+GGG | 0.407821 | 8_2:-6653716 | Msa1230600:CDS |
| GTGATAAATACCTGGAATAG+TGG | 0.410355 | 8_2:+6653622 | None:intergenic |
| CCACCAAGCTCAAAATCAAT+TGG | 0.428908 | 8_2:+6655024 | None:intergenic |
| GGTTCCCCACCCACTATTCC+AGG | 0.429923 | 8_2:-6653632 | Msa1230600:intron |
| GGAGTTGCAGATTGGCGTTA+AGG | 0.461491 | 8_2:-6657102 | Msa1230600:intron |
| ACCAAGTGTTTCTCTCTCGT+TGG | 0.463274 | 8_2:+6657421 | None:intergenic |
| AAAACTTGGCTATGGAGAGC+AGG | 0.467684 | 8_2:-6653654 | Msa1230600:CDS |
| GTCATTGCATCAACATTACT+AGG | 0.477757 | 8_2:-6657340 | Msa1230600:intron |
| GTCGTTCACTCCCACAAGCT+CGG | 0.479973 | 8_2:+6652857 | None:intergenic |
| TTAATTTCTTGCAATTGAGT+TGG | 0.481555 | 8_2:-6652578 | Msa1230600:three_prime_UTR |
| CTGAAAATACCAGCAAAACT+TGG | 0.484203 | 8_2:-6653668 | Msa1230600:CDS |
| ATATTTGACACCGAGCTTGT+GGG | 0.490987 | 8_2:-6652867 | Msa1230600:CDS |
| ATAAAGTGAAAGTACACTAT+CGG | 0.499659 | 8_2:-6656159 | Msa1230600:CDS |
| ATACCAGCAAAACTTGGCTA+TGG | 0.519186 | 8_2:-6653662 | Msa1230600:CDS |
| TATATTTGACACCGAGCTTG+TGG | 0.522619 | 8_2:-6652868 | Msa1230600:CDS |
| TTCTTTGCAGGATGGGACCA+AGG | 0.523846 | 8_2:-6653725 | Msa1230600:intron |
| TAAAGTGAAAGTACACTATC+GGG | 0.529261 | 8_2:-6656158 | Msa1230600:intron |
| AAGCTCGGTGTCAAATATAA+GGG | 0.529495 | 8_2:+6652872 | None:intergenic |
| CTAAGTTTCTGCCAAGAAAG+AGG | 0.532780 | 8_2:-6657135 | Msa1230600:intron |
| GACACATTCCCAATAATCCT+TGG | 0.533580 | 8_2:+6653708 | None:intergenic |
| GCCTGAACTTCACATGATGT+TGG | 0.549979 | 8_2:+6656193 | None:intergenic |
| AATACCTGGAATAGTGGGTG+GGG | 0.552424 | 8_2:+6653628 | None:intergenic |
| GATGTCACGGAGTTGCAGAT+TGG | 0.562827 | 8_2:-6657110 | Msa1230600:CDS |
| TAATAATGCTTTCATTACCA+AGG | 0.566466 | 8_2:-6652732 | Msa1230600:three_prime_UTR |
| GGATTATTGGGAATGTGTCT+TGG | 0.579154 | 8_2:-6653704 | Msa1230600:CDS |
| CAAGAAAGAGGCTGATGTCA+CGG | 0.579757 | 8_2:-6657123 | Msa1230600:CDS |
| AGAGTTAGACAATGAAACCT+TGG | 0.585805 | 8_2:+6652715 | None:intergenic |
| AAATACCTGGAATAGTGGGT+GGG | 0.603802 | 8_2:+6653627 | None:intergenic |
| AGAATCAAATACAGTTCCAT+CGG | 0.607844 | 8_2:+6655065 | None:intergenic |
| AAACTTGGCTATGGAGAGCA+GGG | 0.608629 | 8_2:-6653653 | Msa1230600:CDS |
| TGATAAATACCTGGAATAGT+GGG | 0.608996 | 8_2:+6653623 | None:intergenic |
| TAAATACCTGGAATAGTGGG+TGG | 0.614273 | 8_2:+6653626 | None:intergenic |
| GGTGGTGGTCAAGTGATCAA+AGG | 0.629184 | 8_2:-6655006 | Msa1230600:intron |
| TTGCAGGGAAAACTCACCGA+TGG | 0.633072 | 8_2:-6655081 | Msa1230600:intron |
| TTTCATTGTCTAACTCTGTG+AGG | 0.662564 | 8_2:-6652709 | Msa1230600:three_prime_UTR |
| TGTGAAGTTCAGGCACACAA+AGG | 0.672019 | 8_2:-6656184 | Msa1230600:CDS |
| GAATGTGTCTTGGTGAGAAG+CGG | 0.678965 | 8_2:-6653694 | Msa1230600:CDS |
| TCCAACGAGAGAGAAACACT+TGG | 0.700023 | 8_2:-6657422 | Msa1230600:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTGAGATTATAA+CGG | - | chr8_2:6653613-6653632 | Msa1230600:intron | 10.0% |
| !! | AATGTTCATAAAATTTAATA+AGG | - | chr8_2:6654068-6654087 | Msa1230600:intron | 10.0% |
| !!! | TTAGTTTTATTACAAATTTT+TGG | - | chr8_2:6656177-6656196 | Msa1230600:CDS | 10.0% |
| !! | ATTAATAAATTTAGTTAGTT+AGG | + | chr8_2:6657030-6657049 | None:intergenic | 10.0% |
| !! | TAACTAAATTTATTAATGTA+TGG | - | chr8_2:6657033-6657052 | Msa1230600:intron | 10.0% |
| !!! | ATAGATGTATTTAATTTATA+GGG | + | chr8_2:6657322-6657341 | None:intergenic | 10.0% |
| !!! | AATAGATGTATTTAATTTAT+AGG | + | chr8_2:6657323-6657342 | None:intergenic | 10.0% |
| !! | ATAAATTAAATACATCTATT+TGG | - | chr8_2:6657323-6657342 | Msa1230600:intron | 10.0% |
| !!! | CAGATTTTGAATAAAATAAA+TGG | - | chr8_2:6652926-6652945 | Msa1230600:intron | 15.0% |
| !! | AATTAACATAAATATGGAAA+TGG | + | chr8_2:6653262-6653281 | None:intergenic | 15.0% |
| !!! | TTTTTTATTGAGATTATAAC+GGG | - | chr8_2:6653614-6653633 | Msa1230600:intron | 15.0% |
| !!! | TATTTTGTGTATAAGAAAAT+GGG | - | chr8_2:6653711-6653730 | Msa1230600:CDS | 15.0% |
| !!! | TGTTAGTCTAAAATTTAATA+AGG | - | chr8_2:6654096-6654115 | Msa1230600:intron | 15.0% |
| !!! | TTGTTTTAAAATAATTATGC+TGG | - | chr8_2:6654312-6654331 | Msa1230600:intron | 15.0% |
| !! | TTGCTCAAATTTAATTAATT+TGG | + | chr8_2:6655269-6655288 | None:intergenic | 15.0% |
| !!! | AAATTTTATGGATTTTTTGT+CGG | + | chr8_2:6655922-6655941 | None:intergenic | 15.0% |
| !! | GTAAAACAATGTTAAAATAA+CGG | - | chr8_2:6656947-6656966 | Msa1230600:intron | 15.0% |
| !! | AAATTTATTAATGTATGGTT+AGG | - | chr8_2:6657038-6657057 | Msa1230600:intron | 15.0% |
| !! | AATTTATTAATGTATGGTTA+GGG | - | chr8_2:6657039-6657058 | Msa1230600:intron | 15.0% |
| !! | TTTAGACAAATCAAAATTAA+TGG | - | chr8_2:6657178-6657197 | Msa1230600:intron | 15.0% |
| !! | ATAGAAATTGATGAATTGAA+GGG | + | chr8_2:6652782-6652801 | None:intergenic | 20.0% |
| !!! | TTTTGAATGTTGAAGAATTA+AGG | - | chr8_2:6653197-6653216 | Msa1230600:intron | 20.0% |
| !! | TTTGAATGTTGAAGAATTAA+GGG | - | chr8_2:6653198-6653217 | Msa1230600:intron | 20.0% |
| !! | CACACAAATTAACATAAATA+TGG | + | chr8_2:6653268-6653287 | None:intergenic | 20.0% |
| !! | TGTAATTATAGTTTCTTTGA+GGG | - | chr8_2:6653413-6653432 | Msa1230600:intron | 20.0% |
| !!! | CTATTTTGTGTATAAGAAAA+TGG | - | chr8_2:6653710-6653729 | Msa1230600:CDS | 20.0% |
| !! | AACCAAAAGAAAAAAAATGA+AGG | - | chr8_2:6653966-6653985 | Msa1230600:intron | 20.0% |
| !! | ACCAAAAGAAAAAAAATGAA+GGG | - | chr8_2:6653967-6653986 | Msa1230600:intron | 20.0% |
| !! | TTCATAAAATTTAATAAGGC+AGG | - | chr8_2:6654072-6654091 | Msa1230600:intron | 20.0% |
| !! | TCATAAAATTTAATAAGGCA+GGG | - | chr8_2:6654073-6654092 | Msa1230600:intron | 20.0% |
| !! | CTCTAAATATATATGATATG+AGG | - | chr8_2:6654210-6654229 | Msa1230600:intron | 20.0% |
| !!! | TATGTAGGTTTTCAAATTAA+AGG | + | chr8_2:6654343-6654362 | None:intergenic | 20.0% |
| !! | TCTCATTAAATACTACTATA+AGG | + | chr8_2:6654434-6654453 | None:intergenic | 20.0% |
| !! | ATAGTAGTATTTAATGAGAT+TGG | - | chr8_2:6654435-6654454 | Msa1230600:intron | 20.0% |
| !! | AAATATTTAATTGTCTTTGC+AGG | - | chr8_2:6654881-6654900 | Msa1230600:intron | 20.0% |
| !! | AATATTTAATTGTCTTTGCA+GGG | - | chr8_2:6654882-6654901 | Msa1230600:intron | 20.0% |
| !! | TCTACTAAGCATAATAATAT+AGG | + | chr8_2:6655328-6655347 | None:intergenic | 20.0% |
| !! | TATTTAATCTAAATCCTTGA+TGG | + | chr8_2:6655412-6655431 | None:intergenic | 20.0% |
| !! | CTTAACTATTAAATCATATC+TGG | + | chr8_2:6655443-6655462 | None:intergenic | 20.0% |
| !! | ATGATTTAATAGTTAAGACA+TGG | - | chr8_2:6655446-6655465 | Msa1230600:intron | 20.0% |
| !!! | AATTTTCTTAACATCCAAAA+GGG | + | chr8_2:6655553-6655572 | None:intergenic | 20.0% |
| !!! | AAATTTTCTTAACATCCAAA+AGG | + | chr8_2:6655554-6655573 | None:intergenic | 20.0% |
| !! | CAAAAAATCCATAAAATTTC+CGG | - | chr8_2:6655923-6655942 | Msa1230600:intron | 20.0% |
| !! | AAAAAATCCATAAAATTTCC+GGG | - | chr8_2:6655924-6655943 | Msa1230600:intron | 20.0% |
| !!! | CTGATTTACATTATTAGTTT+TGG | - | chr8_2:6656560-6656579 | Msa1230600:intron | 20.0% |
| !!! | GATTATTTTGTATTCAATGT+CGG | + | chr8_2:6656862-6656881 | None:intergenic | 20.0% |
| !!! | AAAATAATCTCATTTTGTGA+AGG | - | chr8_2:6656873-6656892 | Msa1230600:intron | 20.0% |
| !! | AATAAATTTCTCAAAATAGC+AGG | - | chr8_2:6656925-6656944 | Msa1230600:intron | 20.0% |
| !!! | ATTTTGATTTGTCTAAAGTT+CGG | + | chr8_2:6657175-6657194 | None:intergenic | 20.0% |
| ! | TAGAAATTGATGAATTGAAG+GGG | + | chr8_2:6652781-6652800 | None:intergenic | 25.0% |
| ! | GATAGAAATTGATGAATTGA+AGG | + | chr8_2:6652783-6652802 | None:intergenic | 25.0% |
| !!! | TTGGTATTTTTAAGTTGCTT+TGG | - | chr8_2:6653162-6653181 | Msa1230600:intron | 25.0% |
| ! | GTGTAATTATAGTTTCTTTG+AGG | - | chr8_2:6653412-6653431 | Msa1230600:intron | 25.0% |
| !! | TATGTTTTCATAACGTGATT+TGG | - | chr8_2:6653503-6653522 | Msa1230600:intron | 25.0% |
| !! | ATGTTTTCATAACGTGATTT+GGG | - | chr8_2:6653504-6653523 | Msa1230600:intron | 25.0% |
| !! | AATGTTGACTGATTGTTAAT+AGG | - | chr8_2:6653567-6653586 | Msa1230600:intron | 25.0% |
| !! | ATAAAGTGAAAGTACACTAT+CGG | - | chr8_2:6653819-6653838 | Msa1230600:intron | 25.0% |
| ! | CCAAAAGAAAAAAAATGAAG+GGG | - | chr8_2:6653968-6653987 | Msa1230600:intron | 25.0% |
| !! | AGTCTAAAATTTAATAAGGC+AGG | - | chr8_2:6654100-6654119 | Msa1230600:intron | 25.0% |
| !! | GTCTAAAATTTAATAAGGCA+GGG | - | chr8_2:6654101-6654120 | Msa1230600:intron | 25.0% |
| !!! | TGTTAGTCTTTTAGAGTTAA+AGG | - | chr8_2:6654124-6654143 | Msa1230600:intron | 25.0% |
| ! | AATGGATGAAAAGTTACAAA+AGG | + | chr8_2:6654164-6654183 | None:intergenic | 25.0% |
| ! | ACATAAAAATTTCTCCAAAC+AGG | + | chr8_2:6654489-6654508 | None:intergenic | 25.0% |
| ! | ATTGCAAAATGAAAGCTAAA+AGG | - | chr8_2:6655083-6655102 | Msa1230600:intron | 25.0% |
| ! | AGGATATAAACTAGTTCAAA+AGG | + | chr8_2:6655308-6655327 | None:intergenic | 25.0% |
| ! | GTTAAAATAGCAGATCATAA+TGG | - | chr8_2:6655631-6655650 | Msa1230600:intron | 25.0% |
| ! | AATTGACAGACATTTCTAAT+GGG | - | chr8_2:6655989-6656008 | Msa1230600:intron | 25.0% |
| ! | CATAAAATCTGGCAAAATAT+GGG | + | chr8_2:6656057-6656076 | None:intergenic | 25.0% |
| ! | ACATAAAATCTGGCAAAATA+TGG | + | chr8_2:6656058-6656077 | None:intergenic | 25.0% |
| ! | GATAACAAGAACATAAAATC+TGG | + | chr8_2:6656068-6656087 | None:intergenic | 25.0% |
| ! | TTGTTATCATTTAAGCTTTC+TGG | - | chr8_2:6656080-6656099 | Msa1230600:intron | 25.0% |
| ! | TCATCATATAATCATCTATC+TGG | + | chr8_2:6656221-6656240 | None:intergenic | 25.0% |
| !! | TTGAAATATGAAAGAGGTTT+TGG | + | chr8_2:6656418-6656437 | None:intergenic | 25.0% |
| ! | ACTAACTTGAAATATGAAAG+AGG | + | chr8_2:6656424-6656443 | None:intergenic | 25.0% |
| !!! | TGGTTTTGATTATCTGTTTT+AGG | - | chr8_2:6656580-6656599 | Msa1230600:intron | 25.0% |
| !! | TATGCCACTTAAAATATTAG+TGG | - | chr8_2:6656604-6656623 | Msa1230600:intron | 25.0% |
| !!! | TCTTCCACTAATATTTTAAG+TGG | + | chr8_2:6656611-6656630 | None:intergenic | 25.0% |
| !! | AATGTTCTTTTATGTCAATG+TGG | - | chr8_2:6656638-6656657 | Msa1230600:intron | 25.0% |
| ! | GTGAGTAATATGGTATTAAA+CGG | + | chr8_2:6656670-6656689 | None:intergenic | 25.0% |
| ! | GAAAAGTTATGTGAGTAATA+TGG | + | chr8_2:6656680-6656699 | None:intergenic | 25.0% |
| ! | CTAAATAAACTCATAATACG+AGG | + | chr8_2:6656902-6656921 | None:intergenic | 25.0% |
| ! | AGCAATACATGCTAAAAAAT+GGG | + | chr8_2:6656988-6657007 | None:intergenic | 25.0% |
| ! | AAGCAATACATGCTAAAAAA+TGG | + | chr8_2:6656989-6657008 | None:intergenic | 25.0% |
| !!! | TTTTAGCATGTATTGCTTTT+CGG | - | chr8_2:6656991-6657010 | Msa1230600:intron | 25.0% |
| !!! | TGGTAATGAAAGCATTATTA+AGG | + | chr8_2:6657246-6657265 | None:intergenic | 25.0% |
| ! | TAATAATGCTTTCATTACCA+AGG | - | chr8_2:6657246-6657265 | Msa1230600:intron | 25.0% |
| ! | TTAATTTCTTGCAATTGAGT+TGG | - | chr8_2:6657400-6657419 | Msa1230600:five_prime_UTR | 25.0% |
| GTGATGTGTTATGTGAAAAA+TGG | + | chr8_2:6652700-6652719 | None:intergenic | 30.0% | |
| AAATAGACACGTTTGATCAA+AGG | + | chr8_2:6653142-6653161 | None:intergenic | 30.0% | |
| ! | TGATCAAACGTGTCTATTTT+TGG | - | chr8_2:6653143-6653162 | Msa1230600:intron | 30.0% |
| ! | TTTTCTTCGTTCCAACAATT+GGG | + | chr8_2:6653300-6653319 | None:intergenic | 30.0% |
| ATTGTTATGTAACCGATACA+TGG | - | chr8_2:6653326-6653345 | Msa1230600:intron | 30.0% | |
| !! | ATGAAAATTTGCTGCATCAT+AGG | + | chr8_2:6653668-6653687 | None:intergenic | 30.0% |
| ! | TAAAGTGAAAGTACACTATC+GGG | - | chr8_2:6653820-6653839 | Msa1230600:intron | 30.0% |
| !!! | CCCCTTCATTTTTTTTCTTT+TGG | + | chr8_2:6653971-6653990 | None:intergenic | 30.0% |
| AAGAAAAAAAATGAAGGGGA+AGG | - | chr8_2:6653972-6653991 | Msa1230600:intron | 30.0% | |
| AGAAAAAAAATGAAGGGGAA+GGG | - | chr8_2:6653973-6653992 | Msa1230600:intron | 30.0% | |
| ATTTGGAGGGTCTTAAAATA+AGG | + | chr8_2:6654034-6654053 | None:intergenic | 30.0% | |
| !!! | TATTTTAAGACCCTCCAAAT+AGG | - | chr8_2:6654034-6654053 | Msa1230600:intron | 30.0% |
| !!! | ATTTTAAGACCCTCCAAATA+GGG | - | chr8_2:6654035-6654054 | Msa1230600:intron | 30.0% |
| !!! | ATTTTGAAGTTTCCCCTATT+TGG | + | chr8_2:6654051-6654070 | None:intergenic | 30.0% |
| AAATTGCAAATAGACGAGAA+TGG | + | chr8_2:6654182-6654201 | None:intergenic | 30.0% | |
| ! | AGGTTTTCAAATTAAAGGAC+AGG | + | chr8_2:6654338-6654357 | None:intergenic | 30.0% |
| ! | CATTGATTATATGTTCCCTA+TGG | - | chr8_2:6654388-6654407 | Msa1230600:intron | 30.0% |
| AGGATAGGAAATTAATCATC+AGG | + | chr8_2:6654469-6654488 | None:intergenic | 30.0% | |
| GATTAATTTCCTATCCTGTT+TGG | - | chr8_2:6654472-6654491 | Msa1230600:intron | 30.0% | |
| AAAATTTCTCCAAACAGGAT+AGG | + | chr8_2:6654484-6654503 | None:intergenic | 30.0% | |
| AGTATTCATTGCTCTCTAAA+CGG | + | chr8_2:6654621-6654640 | None:intergenic | 30.0% | |
| TTTAGAGAGCAATGAATACT+TGG | - | chr8_2:6654621-6654640 | Msa1230600:intron | 30.0% | |
| CACAGATAACACAATCAAAA+TGG | + | chr8_2:6654695-6654714 | None:intergenic | 30.0% | |
| TCAGTTATACTTATATCGAG+TGG | - | chr8_2:6654739-6654758 | Msa1230600:intron | 30.0% | |
| CAAAATTCTTCAAAGCATGT+AGG | + | chr8_2:6654765-6654784 | None:intergenic | 30.0% | |
| CATCACAAGAACAAATGAAA+TGG | + | chr8_2:6654803-6654822 | None:intergenic | 30.0% | |
| AGAATCAAATACAGTTCCAT+CGG | + | chr8_2:6654916-6654935 | None:intergenic | 30.0% | |
| !! | AATCCAATTGATTTTGAGCT+TGG | - | chr8_2:6654951-6654970 | Msa1230600:intron | 30.0% |
| ! | CTTAAGATTTTACTCCCTTT+TGG | - | chr8_2:6655536-6655555 | Msa1230600:intron | 30.0% |
| GAATTGACAGACATTTCTAA+TGG | - | chr8_2:6655988-6656007 | Msa1230600:intron | 30.0% | |
| ! | ATGGTTTACTATAACTTGCA+TGG | - | chr8_2:6656121-6656140 | Msa1230600:intron | 30.0% |
| ! | TGGTTTACTATAACTTGCAT+GGG | - | chr8_2:6656122-6656141 | Msa1230600:intron | 30.0% |
| TGATAAATACCTGGAATAGT+GGG | + | chr8_2:6656358-6656377 | None:intergenic | 30.0% | |
| TTACTAACGTGATAAATACC+TGG | + | chr8_2:6656367-6656386 | None:intergenic | 30.0% | |
| TTATCCAACAGCTAAATATC+TGG | - | chr8_2:6656451-6656470 | Msa1230600:intron | 30.0% | |
| ATATCCAGATATTTAGCTGT+TGG | + | chr8_2:6656458-6656477 | None:intergenic | 30.0% | |
| ! | TTACTCACATAACTTTTCGA+AGG | - | chr8_2:6656682-6656701 | Msa1230600:intron | 30.0% |
| CAACAATTGTGATTGATTGA+AGG | + | chr8_2:6656748-6656767 | None:intergenic | 30.0% | |
| ! | ATGTCGGAGTAAAAATGTTT+TGG | + | chr8_2:6656846-6656865 | None:intergenic | 30.0% |
| ! | ATAATCTCATTTTGTGAAGG+AGG | - | chr8_2:6656876-6656895 | Msa1230600:intron | 30.0% |
| ATACATGCTAAAAAATGGGA+TGG | + | chr8_2:6656984-6657003 | None:intergenic | 30.0% | |
| ! | TTAATGGAAGACTAGACTTT+TGG | - | chr8_2:6657194-6657213 | Msa1230600:intron | 30.0% |
| GTCATTGCATCAACATTACT+AGG | - | chr8_2:6652638-6652657 | Msa1230600:three_prime_UTR | 35.0% | |
| !! | TGTTGATGATTCCCAATTGT+TGG | - | chr8_2:6653286-6653305 | Msa1230600:intron | 35.0% |
| ! | CTTTTCTTCGTTCCAACAAT+TGG | + | chr8_2:6653301-6653320 | None:intergenic | 35.0% |
| AAAAGTGGATGTCCATGTAT+CGG | + | chr8_2:6653341-6653360 | None:intergenic | 35.0% | |
| !!! | ACATCCACTTTTTGTTGGAA+TGG | - | chr8_2:6653349-6653368 | Msa1230600:intron | 35.0% |
| CAATCCATTCCAACAAAAAG+TGG | + | chr8_2:6653356-6653375 | None:intergenic | 35.0% | |
| ! | TTATAGTTTCTTTGAGGGTC+AGG | - | chr8_2:6653418-6653437 | Msa1230600:intron | 35.0% |
| !! | AATTTGCTGCATCATAGGTA+GGG | + | chr8_2:6653663-6653682 | None:intergenic | 35.0% |
| !! | AAATTTGCTGCATCATAGGT+AGG | + | chr8_2:6653664-6653683 | None:intergenic | 35.0% |
| AAGCATAAAGAGTAACCTCA+AGG | - | chr8_2:6653905-6653924 | Msa1230600:intron | 35.0% | |
| AGCATAAAGAGTAACCTCAA+GGG | - | chr8_2:6653906-6653925 | Msa1230600:intron | 35.0% | |
| ATGTTGGAAATGTTTGTGAG+AGG | - | chr8_2:6653930-6653949 | Msa1230600:intron | 35.0% | |
| TGTTGGAAATGTTTGTGAGA+GGG | - | chr8_2:6653931-6653950 | Msa1230600:intron | 35.0% | |
| GAAAAAAAATGAAGGGGAAG+GGG | - | chr8_2:6653974-6653993 | Msa1230600:intron | 35.0% | |
| !!! | TTTTAAGACCCTCCAAATAG+GGG | - | chr8_2:6654036-6654055 | Msa1230600:intron | 35.0% |
| ATTACATGCACAACATCTCA+TGG | - | chr8_2:6654243-6654262 | Msa1230600:intron | 35.0% | |
| AGTTCATCATCAGAACCATA+GGG | + | chr8_2:6654406-6654425 | None:intergenic | 35.0% | |
| TAGTTCATCATCAGAACCAT+AGG | + | chr8_2:6654407-6654426 | None:intergenic | 35.0% | |
| AATTTCTTCTTGATCCTCCT+TGG | - | chr8_2:6654546-6654565 | Msa1230600:intron | 35.0% | |
| TCAAAATGTATATGCCACCA+AGG | + | chr8_2:6654566-6654585 | None:intergenic | 35.0% | |
| GTATTCATTGCTCTCTAAAC+GGG | + | chr8_2:6654620-6654639 | None:intergenic | 35.0% | |
| AGAGCAATGAATACTTGGTA+AGG | - | chr8_2:6654626-6654645 | Msa1230600:intron | 35.0% | |
| TGTGATTGTGAGCAAGTTAT+AGG | + | chr8_2:6654654-6654673 | None:intergenic | 35.0% | |
| ! | AACTTGCTCACAATCACAAT+CGG | - | chr8_2:6654656-6654675 | Msa1230600:intron | 35.0% |
| TTCTTGTGATGACTGATGAA+GGG | - | chr8_2:6654812-6654831 | Msa1230600:intron | 35.0% | |
| AAAAGAACGAGAGTTATGTG+TGG | + | chr8_2:6655009-6655028 | None:intergenic | 35.0% | |
| ! | CTCTCGTTCTTTTGAATTTC+TGG | - | chr8_2:6655016-6655035 | Msa1230600:CDS | 35.0% |
| GTCTCCTATGACAAGTAAAA+TGG | - | chr8_2:6655223-6655242 | Msa1230600:intron | 35.0% | |
| !! | TCAGCCATTTTACTTGTCAT+AGG | + | chr8_2:6655230-6655249 | None:intergenic | 35.0% |
| !!! | AAAAGCCTTTTTCGACAAAG+GGG | + | chr8_2:6655499-6655518 | None:intergenic | 35.0% |
| !!! | CAAAAGCCTTTTTCGACAAA+GGG | + | chr8_2:6655500-6655519 | None:intergenic | 35.0% |
| ACACCATATCAATCTGAGAA+TGG | - | chr8_2:6655574-6655593 | Msa1230600:intron | 35.0% | |
| CACCATATCAATCTGAGAAT+GGG | - | chr8_2:6655575-6655594 | Msa1230600:intron | 35.0% | |
| TTCCCATTCTCAGATTGATA+TGG | + | chr8_2:6655580-6655599 | None:intergenic | 35.0% | |
| AACATATAGTTCACGCTCTT+TGG | + | chr8_2:6655614-6655633 | None:intergenic | 35.0% | |
| AGCAAAAGTTTACCTCACAA+AGG | - | chr8_2:6655686-6655705 | Msa1230600:intron | 35.0% | |
| GCAAAAGTTTACCTCACAAA+GGG | - | chr8_2:6655687-6655706 | Msa1230600:intron | 35.0% | |
| ! | TTCTCTTTTGGCAGAAAACA+AGG | + | chr8_2:6655777-6655796 | None:intergenic | 35.0% |
| ! | GATCTATCCCGGAAATTTTA+TGG | + | chr8_2:6655934-6655953 | None:intergenic | 35.0% |
| !!! | TGCTTTTTCTGCGTTTGTAT+AGG | + | chr8_2:6655960-6655979 | None:intergenic | 35.0% |
| GTTATAGTAAACCATACCGT+GGG | + | chr8_2:6656116-6656135 | None:intergenic | 35.0% | |
| AGTTATAGTAAACCATACCG+TGG | + | chr8_2:6656117-6656136 | None:intergenic | 35.0% | |
| CTGAAAATACCAGCAAAACT+TGG | - | chr8_2:6656310-6656329 | Msa1230600:intron | 35.0% | |
| GTGATAAATACCTGGAATAG+TGG | + | chr8_2:6656359-6656378 | None:intergenic | 35.0% | |
| AATATGGCAGTTGAGGAAAA+CGG | + | chr8_2:6656481-6656500 | None:intergenic | 35.0% | |
| TACCAAACTGTAGACCAATA+TGG | + | chr8_2:6656497-6656516 | None:intergenic | 35.0% | |
| ! | GGTAGACGAGTATTTTATCT+TGG | - | chr8_2:6656513-6656532 | Msa1230600:intron | 35.0% |
| ATACCTTACAAGTCATACAG+TGG | - | chr8_2:6656799-6656818 | Msa1230600:intron | 35.0% | |
| ! | TATCCACTGTATGACTTGTA+AGG | + | chr8_2:6656805-6656824 | None:intergenic | 35.0% |
| TACAGTGGATACTTTGTGAT+TGG | - | chr8_2:6656814-6656833 | Msa1230600:intron | 35.0% | |
| !! | AAGCTCGGTGTCAAATATAA+GGG | + | chr8_2:6657109-6657128 | None:intergenic | 35.0% |
| AGAGTTAGACAATGAAACCT+TGG | + | chr8_2:6657266-6657285 | None:intergenic | 35.0% | |
| TTTCATTGTCTAACTCTGTG+AGG | - | chr8_2:6657269-6657288 | Msa1230600:intron | 35.0% | |
| ! | GCTTTCGTGAGAATTTTCAT+TGG | - | chr8_2:6657365-6657384 | Msa1230600:CDS | 35.0% |
| CTAAGTTTCTGCCAAGAAAG+AGG | - | chr8_2:6652843-6652862 | Msa1230600:CDS | 40.0% | |
| !!! | CATGGACATCCACTTTTTGT+TGG | - | chr8_2:6653344-6653363 | Msa1230600:intron | 40.0% |
| ACCAACATCATGTGAAGTTC+AGG | - | chr8_2:6653784-6653803 | Msa1230600:intron | 40.0% | |
| ACATTTCCAACATTCCCTTG+AGG | + | chr8_2:6653923-6653942 | None:intergenic | 40.0% | |
| GTTGGAAATGTTTGTGAGAG+GGG | - | chr8_2:6653932-6653951 | Msa1230600:intron | 40.0% | |
| AGAAGATGGGAGTAGTTAGT+TGG | - | chr8_2:6654008-6654027 | Msa1230600:intron | 40.0% | |
| TGAAGTTTCCCCTATTTGGA+GGG | + | chr8_2:6654047-6654066 | None:intergenic | 40.0% | |
| TTGAAGTTTCCCCTATTTGG+AGG | + | chr8_2:6654048-6654067 | None:intergenic | 40.0% | |
| GCTTCTGCATATGCTTATGT+AGG | + | chr8_2:6654358-6654377 | None:intergenic | 40.0% | |
| AAATGTATATGCCACCAAGG+AGG | + | chr8_2:6654563-6654582 | None:intergenic | 40.0% | |
| AACTGATTGACGTCAACAGA+AGG | + | chr8_2:6654725-6654744 | None:intergenic | 40.0% | |
| GTTCTTGTGATGACTGATGA+AGG | - | chr8_2:6654811-6654830 | Msa1230600:intron | 40.0% | |
| CCACCAAGCTCAAAATCAAT+TGG | + | chr8_2:6654957-6654976 | None:intergenic | 40.0% | |
| !! | CCAATTGATTTTGAGCTTGG+TGG | - | chr8_2:6654954-6654973 | Msa1230600:intron | 40.0% |
| !! | ATTGATTTTGAGCTTGGTGG+TGG | - | chr8_2:6654957-6654976 | Msa1230600:intron | 40.0% |
| TAATGAAATAGCTGCTGTGC+TGG | - | chr8_2:6655049-6655068 | Msa1230600:CDS | 40.0% | |
| !! | TGGCTGATTTGTAACATGTG+AGG | - | chr8_2:6655243-6655262 | Msa1230600:intron | 40.0% |
| GCTTAGTAGAAACCTGTGTA+AGG | - | chr8_2:6655338-6655357 | Msa1230600:intron | 40.0% | |
| TAGTAGAAACCTGTGTAAGG+AGG | - | chr8_2:6655341-6655360 | Msa1230600:intron | 40.0% | |
| AGTAGAAACCTGTGTAAGGA+GGG | - | chr8_2:6655342-6655361 | Msa1230600:intron | 40.0% | |
| GCTTTGCATGTAGTTTCTCT+GGG | + | chr8_2:6655390-6655409 | None:intergenic | 40.0% | |
| AACTACATGCAAAGCCATCA+AGG | - | chr8_2:6655395-6655414 | Msa1230600:intron | 40.0% | |
| !!! | GCAAAAGCCTTTTTCGACAA+AGG | + | chr8_2:6655501-6655520 | None:intergenic | 40.0% |
| ! | TTTTGGCAGAAAACAAGGAG+TGG | + | chr8_2:6655772-6655791 | None:intergenic | 40.0% |
| CCAAAAGAGAATCCAACGAT+GGG | - | chr8_2:6655786-6655805 | Msa1230600:intron | 40.0% | |
| CTTCGTGATGTTATTACTCG+CGG | - | chr8_2:6655824-6655843 | Msa1230600:intron | 40.0% | |
| TGTATAGGACTGATCTATCC+CGG | + | chr8_2:6655945-6655964 | None:intergenic | 40.0% | |
| TGACAGACATTTCTAATGGG+AGG | - | chr8_2:6655992-6656011 | Msa1230600:intron | 40.0% | |
| GACACATTCCCAATAATCCT+TGG | + | chr8_2:6656273-6656292 | None:intergenic | 40.0% | |
| GGATTATTGGGAATGTGTCT+TGG | - | chr8_2:6656274-6656293 | Msa1230600:intron | 40.0% | |
| ATACCAGCAAAACTTGGCTA+TGG | - | chr8_2:6656316-6656335 | Msa1230600:intron | 40.0% | |
| !! | AAATACCTGGAATAGTGGGT+GGG | + | chr8_2:6656354-6656373 | None:intergenic | 40.0% |
| ! | TAAATACCTGGAATAGTGGG+TGG | + | chr8_2:6656355-6656374 | None:intergenic | 40.0% |
| ! | GTTTTCCTCAACTGCCATAT+TGG | - | chr8_2:6656480-6656499 | Msa1230600:intron | 40.0% |
| ! | TGCCATATTGGTCTACAGTT+TGG | - | chr8_2:6656492-6656511 | Msa1230600:intron | 40.0% |
| !! | CAAGCTCGGTGTCAAATATA+AGG | + | chr8_2:6657110-6657129 | None:intergenic | 40.0% |
| TATATTTGACACCGAGCTTG+TGG | - | chr8_2:6657110-6657129 | Msa1230600:CDS | 40.0% | |
| ATATTTGACACCGAGCTTGT+GGG | - | chr8_2:6657111-6657130 | Msa1230600:CDS | 40.0% | |
| TCCAACGAGAGAGAAACACT+TGG | - | chr8_2:6652556-6652575 | Msa1230600:three_prime_UTR | 45.0% | |
| ACCAAGTGTTTCTCTCTCGT+TGG | + | chr8_2:6652560-6652579 | None:intergenic | 45.0% | |
| CAAGAAAGAGGCTGATGTCA+CGG | - | chr8_2:6652855-6652874 | Msa1230600:CDS | 45.0% | |
| CACATGTGTCAGTGTCATGT+TGG | - | chr8_2:6653082-6653101 | Msa1230600:intron | 45.0% | |
| ! | GTCATGTTGGTGTCTCATGT+TGG | - | chr8_2:6653095-6653114 | Msa1230600:intron | 45.0% |
| ! | TTGATCAAAGGTGTGTCTGG+TGG | + | chr8_2:6653130-6653149 | None:intergenic | 45.0% |
| ! | CGTTTGATCAAAGGTGTGTC+TGG | + | chr8_2:6653133-6653152 | None:intergenic | 45.0% |
| CAGTAAAAGCCTTGCTAGCA+AGG | - | chr8_2:6653535-6653554 | Msa1230600:intron | 45.0% | |
| GCCTGAACTTCACATGATGT+TGG | + | chr8_2:6653788-6653807 | None:intergenic | 45.0% | |
| TGTGAAGTTCAGGCACACAA+AGG | - | chr8_2:6653794-6653813 | Msa1230600:intron | 45.0% | |
| GAGTAACCTCAAGGGAATGT+TGG | - | chr8_2:6653914-6653933 | Msa1230600:intron | 45.0% | |
| GAAATGTTTGTGAGAGGGGA+AGG | - | chr8_2:6653936-6653955 | Msa1230600:intron | 45.0% | |
| TTGTGAGAGGGGAAGGATTA+AGG | - | chr8_2:6653943-6653962 | Msa1230600:intron | 45.0% | |
| AAAAATGAAGGGGAAGGGGA+AGG | - | chr8_2:6653978-6653997 | Msa1230600:intron | 45.0% | |
| AAAATGAAGGGGAAGGGGAA+GGG | - | chr8_2:6653979-6653998 | Msa1230600:intron | 45.0% | |
| TTCTTCTTGATCCTCCTTGG+TGG | - | chr8_2:6654549-6654568 | Msa1230600:intron | 45.0% | |
| GTCTGTCAGGTTACATGTGA+AGG | + | chr8_2:6654593-6654612 | None:intergenic | 45.0% | |
| GATTGACGTCAACAGAAGGT+AGG | + | chr8_2:6654721-6654740 | None:intergenic | 45.0% | |
| TGCCAGATCATTGTAGCTCA+CGG | - | chr8_2:6655161-6655180 | Msa1230600:intron | 45.0% | |
| TTCCGTGAGCTACAATGATC+TGG | + | chr8_2:6655166-6655185 | None:intergenic | 45.0% | |
| ATCATTGTAGCTCACGGAAG+AGG | - | chr8_2:6655167-6655186 | Msa1230600:intron | 45.0% | |
| TCATTGTAGCTCACGGAAGA+GGG | - | chr8_2:6655168-6655187 | Msa1230600:intron | 45.0% | |
| AACAACTACCCTCCTTACAC+AGG | + | chr8_2:6655353-6655372 | None:intergenic | 45.0% | |
| TTGCATGTAGTTTCTCTGGG+TGG | + | chr8_2:6655387-6655406 | None:intergenic | 45.0% | |
| GGCTTTGCATGTAGTTTCTC+TGG | + | chr8_2:6655391-6655410 | None:intergenic | 45.0% | |
| GTCAACCCCTTTGTCGAAAA+AGG | - | chr8_2:6655491-6655510 | Msa1230600:intron | 45.0% | |
| GCCAAAAGAGAATCCAACGA+TGG | - | chr8_2:6655785-6655804 | Msa1230600:intron | 45.0% | |
| ! | CCCATCGTTGGATTCTCTTT+TGG | + | chr8_2:6655789-6655808 | None:intergenic | 45.0% |
| !! | TTCTGGCCTTTTGATACCCA+CGG | - | chr8_2:6656097-6656116 | Msa1230600:intron | 45.0% |
| ACCATACCGTGGGTATCAAA+AGG | + | chr8_2:6656106-6656125 | None:intergenic | 45.0% | |
| CTTGCATGGGTGTATTTACG+CGG | - | chr8_2:6656135-6656154 | Msa1230600:intron | 45.0% | |
| AGGATGGGACCAAGGATTAT+TGG | - | chr8_2:6656261-6656280 | Msa1230600:intron | 45.0% | |
| GGATGGGACCAAGGATTATT+GGG | - | chr8_2:6656262-6656281 | Msa1230600:intron | 45.0% | |
| GAATGTGTCTTGGTGAGAAG+CGG | - | chr8_2:6656284-6656303 | Msa1230600:intron | 45.0% | |
| ! | TCTCCATAGCCAAGTTTTGC+TGG | + | chr8_2:6656322-6656341 | None:intergenic | 45.0% |
| AAAACTTGGCTATGGAGAGC+AGG | - | chr8_2:6656324-6656343 | Msa1230600:intron | 45.0% | |
| AAACTTGGCTATGGAGAGCA+GGG | - | chr8_2:6656325-6656344 | Msa1230600:intron | 45.0% | |
| !! | AATACCTGGAATAGTGGGTG+GGG | + | chr8_2:6656353-6656372 | None:intergenic | 45.0% |
| GTAGACCAATATGGCAGTTG+AGG | + | chr8_2:6656488-6656507 | None:intergenic | 45.0% | |
| !! | TGACATTGACTTGAACCTGC+AGG | - | chr8_2:6657075-6657094 | Msa1230600:intron | 45.0% |
| CGTGACATCAGCCTCTTTCT+TGG | + | chr8_2:6652857-6652876 | None:intergenic | 50.0% | |
| GATGTCACGGAGTTGCAGAT+TGG | - | chr8_2:6652868-6652887 | Msa1230600:CDS | 50.0% | |
| GGAGTTGCAGATTGGCGTTA+AGG | - | chr8_2:6652876-6652895 | Msa1230600:CDS | 50.0% | |
| ATCTCGTGACCTTGCTAGCA+AGG | + | chr8_2:6653547-6653566 | None:intergenic | 50.0% | |
| GCTGCATCATAGGTAGGGAT+TGG | + | chr8_2:6653658-6653677 | None:intergenic | 50.0% | |
| AAATGAAGGGGAAGGGGAAG+GGG | - | chr8_2:6653980-6653999 | Msa1230600:intron | 50.0% | |
| CTAAACGGGTAGTGTCTGTC+AGG | + | chr8_2:6654606-6654625 | None:intergenic | 50.0% | |
| TTGCAGGGAAAACTCACCGA+TGG | - | chr8_2:6654897-6654916 | Msa1230600:intron | 50.0% | |
| ! | GGTGGTGGTCAAGTGATCAA+AGG | - | chr8_2:6654972-6654991 | Msa1230600:intron | 50.0% |
| CGGAAGAGGGTTGTTGATGT+TGG | - | chr8_2:6655181-6655200 | Msa1230600:intron | 50.0% | |
| CTGTTCGTGATCCCTTTGTG+AGG | + | chr8_2:6655701-6655720 | None:intergenic | 50.0% | |
| GGCAGAAAACAAGGAGTGGT+GGG | + | chr8_2:6655768-6655787 | None:intergenic | 50.0% | |
| TGGCAGAAAACAAGGAGTGG+TGG | + | chr8_2:6655769-6655788 | None:intergenic | 50.0% | |
| ! | GCCTTTTGATACCCACGGTA+TGG | - | chr8_2:6656102-6656121 | Msa1230600:intron | 50.0% |
| TTGCTCCTCCTCTTCTTTGC+AGG | - | chr8_2:6656241-6656260 | Msa1230600:intron | 50.0% | |
| TCCTCCTCTTCTTTGCAGGA+TGG | - | chr8_2:6656245-6656264 | Msa1230600:intron | 50.0% | |
| CCTCCTCTTCTTTGCAGGAT+GGG | - | chr8_2:6656246-6656265 | Msa1230600:intron | 50.0% | |
| TTCTTTGCAGGATGGGACCA+AGG | - | chr8_2:6656253-6656272 | Msa1230600:intron | 50.0% | |
| !! | CATTGACTTGAACCTGCAGG+TGG | - | chr8_2:6657078-6657097 | Msa1230600:intron | 50.0% |
| GGAAGGGGAGGGAAGAAGAT+GGG | - | chr8_2:6653995-6654014 | Msa1230600:intron | 55.0% | |
| CGACAAAGGGGTTGACTGCA+TGG | + | chr8_2:6655487-6655506 | None:intergenic | 55.0% | |
| ACGCGAAGTCTTCCCATCGT+TGG | + | chr8_2:6655801-6655820 | None:intergenic | 55.0% | |
| CCCATCCTGCAAAGAAGAGG+AGG | + | chr8_2:6656249-6656268 | None:intergenic | 55.0% | |
| GGTCCCATCCTGCAAAGAAG+AGG | + | chr8_2:6656252-6656271 | None:intergenic | 55.0% | |
| GTCGTTCACTCCCACAAGCT+CGG | + | chr8_2:6657124-6657143 | None:intergenic | 55.0% | |
| GGGAAGGGGAGGGAAGAAGA+TGG | - | chr8_2:6653994-6654013 | Msa1230600:intron | 60.0% | |
| GGTTCCCCACCCACTATTCC+AGG | - | chr8_2:6656346-6656365 | Msa1230600:intron | 60.0% | |
| ATAAGGGTCGCACCACCTGC+AGG | + | chr8_2:6657093-6657112 | None:intergenic | 60.0% | |
| TGAAGGGGAAGGGGAAGGGG+AGG | - | chr8_2:6653983-6654002 | Msa1230600:intron | 65.0% | |
| GAAGGGGAAGGGGAAGGGGA+GGG | - | chr8_2:6653984-6654003 | Msa1230600:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 6652555 | 6657445 | 6652555 | ID=Msa1230600;Name=Msa1230600 |
| chr8_2 | mRNA | 6652555 | 6657445 | 6652555 | ID=Msa1230600-mRNA-1;Parent=Msa1230600;Name=Msa1230600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=53|1|1|1|1|1|6|263|148 |
| chr8_2 | exon | 6652555 | 6652903 | 6652555 | ID=Msa1230600-mRNA-1:exon:2506;Parent=Msa1230600-mRNA-1 |
| chr8_2 | exon | 6653633 | 6653737 | 6653633 | ID=Msa1230600-mRNA-1:exon:2505;Parent=Msa1230600-mRNA-1 |
| chr8_2 | exon | 6655007 | 6655097 | 6655007 | ID=Msa1230600-mRNA-1:exon:2504;Parent=Msa1230600-mRNA-1 |
| chr8_2 | exon | 6656159 | 6656221 | 6656159 | ID=Msa1230600-mRNA-1:exon:2503;Parent=Msa1230600-mRNA-1 |
| chr8_2 | exon | 6657103 | 6657152 | 6657103 | ID=Msa1230600-mRNA-1:exon:2502;Parent=Msa1230600-mRNA-1 |
| chr8_2 | exon | 6657341 | 6657445 | 6657341 | ID=Msa1230600-mRNA-1:exon:2501;Parent=Msa1230600-mRNA-1 |
| chr8_2 | five_prime_UTR | 6657393 | 6657445 | 6657393 | ID=Msa1230600-mRNA-1:five_prime_utr;Parent=Msa1230600-mRNA-1 |
| chr8_2 | CDS | 6657341 | 6657392 | 6657341 | ID=Msa1230600-mRNA-1:cds;Parent=Msa1230600-mRNA-1 |
| chr8_2 | CDS | 6657103 | 6657152 | 6657103 | ID=Msa1230600-mRNA-1:cds;Parent=Msa1230600-mRNA-1 |
| chr8_2 | CDS | 6656159 | 6656221 | 6656159 | ID=Msa1230600-mRNA-1:cds;Parent=Msa1230600-mRNA-1 |
| chr8_2 | CDS | 6655007 | 6655097 | 6655007 | ID=Msa1230600-mRNA-1:cds;Parent=Msa1230600-mRNA-1 |
| chr8_2 | CDS | 6653633 | 6653737 | 6653633 | ID=Msa1230600-mRNA-1:cds;Parent=Msa1230600-mRNA-1 |
| chr8_2 | CDS | 6652818 | 6652903 | 6652818 | ID=Msa1230600-mRNA-1:cds;Parent=Msa1230600-mRNA-1 |
| chr8_2 | three_prime_UTR | 6652555 | 6652817 | 6652555 | ID=Msa1230600-mRNA-1:three_prime_utr;Parent=Msa1230600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
