Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312510 | XP_003627048.1 | 98.580 | 493 | 7 | 0 | 1 | 493 | 1 | 493 | 0.0 | 998 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312510 | sp|Q9SEK2|HXK1_TOBAC | 72.874 | 494 | 133 | 1 | 1 | 493 | 1 | 494 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312510 | G7LGP4 | 98.580 | 493 | 7 | 0 | 1 | 493 | 1 | 493 | 0.0 | 998 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0687870 | Msa1312510 | 0.809034 | 2.309391e-50 | -8.615850e-47 |
| Msa0705000 | Msa1312510 | 0.809193 | 2.135518e-50 | -8.615850e-47 |
| Msa0705040 | Msa1312510 | 0.805677 | 1.189215e-49 | -8.615850e-47 |
| Msa1312510 | Msa1401390 | 0.832465 | 9.307964e-56 | -8.615850e-47 |
| Msa1180660 | Msa1312510 | 0.984313 | 3.374632e-160 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312510 | MtrunA17_Chr8g0340741 | 98.580 | 493 | 7 | 0 | 1 | 493 | 1 | 493 | 0.0 | 998 |
| Msa1312510 | MtrunA17_Chr8g0389821 | 74.310 | 471 | 119 | 2 | 25 | 494 | 26 | 495 | 0.0 | 735 |
| Msa1312510 | MtrunA17_Chr6g0487071 | 70.043 | 464 | 138 | 1 | 32 | 494 | 30 | 493 | 0.0 | 679 |
| Msa1312510 | MtrunA17_Chr1g0156571 | 57.837 | 453 | 188 | 3 | 40 | 491 | 42 | 492 | 0.0 | 522 |
| Msa1312510 | MtrunA17_Chr5g0396421 | 56.263 | 471 | 193 | 5 | 29 | 489 | 29 | 496 | 3.52e-173 | 496 |
| Msa1312510 | MtrunA17_Chr4g0054541 | 58.861 | 158 | 63 | 1 | 227 | 384 | 5 | 160 | 1.83e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312510 | AT2G19860.1 | 71.717 | 495 | 139 | 1 | 1 | 494 | 1 | 495 | 0.0 | 728 |
| Msa1312510 | AT4G29130.1 | 73.077 | 494 | 132 | 1 | 1 | 493 | 1 | 494 | 0.0 | 728 |
| Msa1312510 | AT2G19860.2 | 73.316 | 386 | 102 | 1 | 110 | 494 | 1 | 386 | 0.0 | 586 |
| Msa1312510 | AT1G47840.1 | 53.524 | 454 | 206 | 5 | 40 | 491 | 43 | 493 | 3.06e-163 | 471 |
| Msa1312510 | AT1G50460.1 | 52.008 | 473 | 213 | 6 | 26 | 487 | 26 | 495 | 1.39e-162 | 470 |
| Msa1312510 | AT3G20040.1 | 49.190 | 494 | 242 | 4 | 1 | 487 | 1 | 492 | 1.16e-153 | 447 |
| Msa1312510 | AT1G50460.3 | 50.493 | 406 | 187 | 6 | 93 | 487 | 17 | 419 | 1.72e-128 | 380 |
| Msa1312510 | AT4G37840.1 | 44.770 | 478 | 234 | 8 | 22 | 486 | 22 | 482 | 7.11e-124 | 371 |
| Msa1312510 | AT1G50460.2 | 54.985 | 331 | 146 | 3 | 26 | 355 | 26 | 354 | 8.53e-122 | 361 |
| Msa1312510 | AT1G47840.2 | 58.176 | 318 | 129 | 4 | 40 | 355 | 43 | 358 | 2.16e-119 | 355 |
| Msa1312510 | AT1G47845.1 | 46.575 | 146 | 75 | 3 | 278 | 422 | 40 | 183 | 9.05e-34 | 126 |
Find 131 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAAATCACCATGCCATTT+TGG | 0.192144 | 8_4:+9520064 | None:intergenic |
| AACTGAAGGATAGATGATTT+TGG | 0.210035 | 8_4:+9522580 | None:intergenic |
| TGAAAGTTCCATTCATATTA+AGG | 0.249236 | 8_4:-9519646 | Msa1312510:intron |
| TAGACTGCTGGGGTCAAAAT+TGG | 0.268648 | 8_4:+9518316 | None:intergenic |
| GAATAGTCATACTCAGTTAA+TGG | 0.280021 | 8_4:+9519896 | None:intergenic |
| AAGCAAACATCCATTTCTTC+TGG | 0.328497 | 8_4:-9520535 | Msa1312510:CDS |
| GAAATGGATGTTTGCTTGAC+AGG | 0.331885 | 8_4:+9520541 | None:intergenic |
| CTAATTTCTACATTGCTGTT+AGG | 0.337570 | 8_4:-9518198 | Msa1312510:three_prime_UTR |
| GTCAATCTTTCCTAGACTGC+TGG | 0.345017 | 8_4:+9518304 | None:intergenic |
| TTAGCAATTATCATGTTATT+CGG | 0.345905 | 8_4:-9518373 | Msa1312510:exon |
| CTCTAAAATCTCCTTCAGTT+TGG | 0.351523 | 8_4:+9518889 | None:intergenic |
| TGAAGAAAGTGAAGATTTCA+AGG | 0.377653 | 8_4:-9520608 | Msa1312510:CDS |
| GATGTCCCGACCATCAAATT+TGG | 0.377775 | 8_4:+9520811 | None:intergenic |
| TTCGTTGATAATCTTCCTAC+AGG | 0.388159 | 8_4:-9522172 | Msa1312510:CDS |
| TTCCTCCAAATTTGATGGTC+GGG | 0.401839 | 8_4:-9520816 | Msa1312510:CDS |
| CGCAATTGTACCTGTTCACC+AGG | 0.404155 | 8_4:+9519851 | None:intergenic |
| GTGCTCAAGCAATACCAAAA+TGG | 0.408539 | 8_4:-9520078 | Msa1312510:CDS |
| CTTCTGGGAACCTTATCAAC+TGG | 0.409863 | 8_4:-9520519 | Msa1312510:CDS |
| GTCGTTTACATAGGTTGGTC+AGG | 0.410193 | 8_4:-9520388 | Msa1312510:intron |
| GATACAGTCGGGACATTAGC+TGG | 0.411737 | 8_4:-9520175 | Msa1312510:CDS |
| GAGTTTAAACCCTGGTGAAC+AGG | 0.414005 | 8_4:-9519861 | Msa1312510:intron |
| TCGTAGAGTACTATACAAAA+TGG | 0.414429 | 8_4:-9519711 | Msa1312510:CDS |
| CATGGTGATTTGCCCAAGTC+TGG | 0.418240 | 8_4:-9520055 | Msa1312510:CDS |
| GATAATATCTGGAATGTACT+TGG | 0.418293 | 8_4:-9519744 | Msa1312510:CDS |
| ACATGGAGTGGGGAAACTTC+CGG | 0.420382 | 8_4:-9519931 | Msa1312510:CDS |
| CACGTACGCTGCATTTGTTC+CGG | 0.422595 | 8_4:+9520105 | None:intergenic |
| TGATATGAACATAACAGCTT+TGG | 0.423547 | 8_4:-9520322 | Msa1312510:intron |
| TCAAACGATGGTTCAGGAAC+TGG | 0.426928 | 8_4:-9518438 | Msa1312510:CDS |
| GACATGCACACATATACTTT+AGG | 0.427494 | 8_4:-9518284 | Msa1312510:three_prime_UTR |
| AATTTGTACCTTAATATGAA+TGG | 0.430233 | 8_4:+9519638 | None:intergenic |
| GTCAATTCCTCCAAATTTGA+TGG | 0.432250 | 8_4:-9520821 | Msa1312510:CDS |
| GATAAGGTTCCCAGAAGAAA+TGG | 0.432980 | 8_4:+9520525 | None:intergenic |
| AACCTTATCAACTGGACAAA+AGG | 0.439588 | 8_4:-9520511 | Msa1312510:CDS |
| TCAATCTTTCCTAGACTGCT+GGG | 0.445171 | 8_4:+9518305 | None:intergenic |
| CACGCTGGTCTTGCTTCTGA+TGG | 0.450067 | 8_4:-9522223 | Msa1312510:CDS |
| AGCGATATTGAAGGAATTTG+AGG | 0.455513 | 8_4:-9522308 | Msa1312510:CDS |
| TAGTACATTGCAGAATTCTC+AGG | 0.457342 | 8_4:+9518218 | None:intergenic |
| ACTCACCATTTCTCCAGACT+TGG | 0.457826 | 8_4:+9520042 | None:intergenic |
| ACCAACGTTGAAGCTGAAAC+AGG | 0.462199 | 8_4:-9522272 | Msa1312510:CDS |
| CGTGGGAATTCTGAAGAAGT+TGG | 0.463666 | 8_4:-9518616 | Msa1312510:CDS |
| AGCAAACATCCATTTCTTCT+GGG | 0.478280 | 8_4:-9520534 | Msa1312510:CDS |
| GTGGCGTGTGCGACGGTGAT+CGG | 0.481181 | 8_4:-9522409 | Msa1312510:CDS |
| GGTGCTCGTCTTTCTGCAGC+TGG | 0.483516 | 8_4:-9518642 | Msa1312510:CDS |
| ACAAAATGGCTGAAGAAGCT+TGG | 0.486720 | 8_4:-9519697 | Msa1312510:CDS |
| GTGGGAATTCTGAAGAAGTT+GGG | 0.490235 | 8_4:-9518615 | Msa1312510:CDS |
| ATCGTTGAGCACTCAAACGA+TGG | 0.493326 | 8_4:-9518450 | Msa1312510:CDS |
| CCTAGCTCCCTCTTTCTACC+TGG | 0.503608 | 8_4:+9520580 | None:intergenic |
| GAGCACTCAAACGATGGTTC+AGG | 0.504238 | 8_4:-9518444 | Msa1312510:CDS |
| CCAGGTAGAAAGAGGGAGCT+AGG | 0.506646 | 8_4:-9520580 | Msa1312510:CDS |
| TTGCTTGACAGGAAAGGAAA+AGG | 0.507613 | 8_4:+9520552 | None:intergenic |
| CTCATATAGTCCACCATCCA+TGG | 0.513083 | 8_4:+9518548 | None:intergenic |
| CGGAACAAATGCAGCGTACG+TGG | 0.515444 | 8_4:-9520104 | Msa1312510:CDS |
| TTTGCCCAAGTCTGGAGAAA+TGG | 0.519733 | 8_4:-9520047 | Msa1312510:intron |
| TACCTCGCTGGAAGTGAGAA+AGG | 0.524646 | 8_4:-9518700 | Msa1312510:CDS |
| AGCTACGGCGGCGTGTGTGG+TGG | 0.531377 | 8_4:-9522386 | Msa1312510:CDS |
| ATGATAATTGCTAAACATCA+AGG | 0.533118 | 8_4:+9518382 | None:intergenic |
| TGACATCCTTGTTTGTATGT+CGG | 0.537032 | 8_4:+9520149 | None:intergenic |
| AAAAGCAATAGCGATATTGA+AGG | 0.541074 | 8_4:-9522317 | Msa1312510:CDS |
| CTTTCTGCAGCTGGTATCGT+GGG | 0.541549 | 8_4:-9518633 | Msa1312510:CDS |
| TGCAGAAAGACGAGCACCAC+GGG | 0.544093 | 8_4:+9518647 | None:intergenic |
| AGGTTCCTCCAGGTAGAAAG+AGG | 0.544405 | 8_4:-9520588 | Msa1312510:CDS |
| GGATGTTTGCTTGACAGGAA+AGG | 0.545412 | 8_4:+9520546 | None:intergenic |
| GAAGATTTCAAGGTTCCTCC+AGG | 0.545754 | 8_4:-9520598 | Msa1312510:CDS |
| CGTGTATTACGTGTGCAACT+TGG | 0.548240 | 8_4:-9520883 | Msa1312510:CDS |
| AATACCATAAAAGAGTTGCT+TGG | 0.548770 | 8_4:-9518495 | Msa1312510:CDS |
| ATTCCTCCAAATTTGATGGT+CGG | 0.548843 | 8_4:-9520817 | Msa1312510:CDS |
| AAAGGTGGTGGCGTGTGCGA+CGG | 0.549544 | 8_4:-9522416 | Msa1312510:CDS |
| CGGAGCTACGGCGGCGTGTG+TGG | 0.553770 | 8_4:-9522389 | Msa1312510:CDS |
| GAGAGAGTGTGCGTGTACTT+TGG | 0.554033 | 8_4:-9522493 | Msa1312510:five_prime_UTR |
| ACGTGAAGAAATCGAAGCGA+TGG | 0.554895 | 8_4:-9522342 | Msa1312510:CDS |
| TCTTTCTGCAGCTGGTATCG+TGG | 0.555070 | 8_4:-9518634 | Msa1312510:CDS |
| TTAATGGAAGGTGTGATGAC+CGG | 0.556688 | 8_4:+9519912 | None:intergenic |
| ATAAAAGAGTTGCTTGGTGA+AGG | 0.558125 | 8_4:-9518489 | Msa1312510:CDS |
| GTAGGTTATCAACATGGAGT+GGG | 0.559686 | 8_4:-9519942 | Msa1312510:intron |
| CTCACCATTTCTCCAGACTT+GGG | 0.559699 | 8_4:+9520043 | None:intergenic |
| TGCAATATTGTTGCTACCCG+TGG | 0.560003 | 8_4:-9518663 | Msa1312510:CDS |
| GGCGGCGTGTGTGGTGGCGA+CGG | 0.562436 | 8_4:-9522380 | Msa1312510:CDS |
| TGCGACGGTGATCGGAGCTA+CGG | 0.565242 | 8_4:-9522401 | Msa1312510:CDS |
| TTAGATATCTGATACCTCGC+TGG | 0.567298 | 8_4:-9518712 | Msa1312510:intron |
| ATAGGTTGGTCAGGATGTTG+TGG | 0.569173 | 8_4:-9520379 | Msa1312510:intron |
| GTCCCGACCATCAAATTTGG+AGG | 0.570166 | 8_4:+9520814 | None:intergenic |
| ACCTGTTTCAGCTTCAACGT+TGG | 0.570181 | 8_4:+9522271 | None:intergenic |
| AGATACAATCACCGTTGGCG+AGG | 0.574332 | 8_4:-9518589 | Msa1312510:CDS |
| TGATGCATGGCAGACATGTC+AGG | 0.576522 | 8_4:+9518944 | None:intergenic |
| ATAATATCTGGAATGTACTT+GGG | 0.581117 | 8_4:-9519743 | Msa1312510:CDS |
| CGTGAAGAAATCGAAGCGAT+GGG | 0.582816 | 8_4:-9522341 | Msa1312510:CDS |
| AATAGGTCAATGATACAGTC+GGG | 0.583803 | 8_4:-9520186 | Msa1312510:intron |
| ATAATAAATAAATAAACTGA+AGG | 0.584838 | 8_4:+9522566 | None:intergenic |
| GCTGGTCTTGCTTCTGATGG+TGG | 0.587614 | 8_4:-9522220 | Msa1312510:CDS |
| CAATAGGTCAATGATACAGT+CGG | 0.587691 | 8_4:-9520187 | Msa1312510:intron |
| ATTCTTCTGACCCTCGCCAA+CGG | 0.592171 | 8_4:+9518578 | None:intergenic |
| AGCGGATGAGTCATGATGCA+TGG | 0.597968 | 8_4:+9518931 | None:intergenic |
| GTGCAACTTGGTGGCAAGGA+TGG | 0.599780 | 8_4:-9520871 | Msa1312510:CDS |
| GATACAATCACCGTTGGCGA+GGG | 0.600193 | 8_4:-9518588 | Msa1312510:CDS |
| GTATTACGTGTGCAACTTGG+TGG | 0.603393 | 8_4:-9520880 | Msa1312510:CDS |
| TCAGAAGAATGTGATAGCCA+TGG | 0.609370 | 8_4:-9518565 | Msa1312510:CDS |
| TGTGGTCAAAACCAAACTGA+AGG | 0.613018 | 8_4:-9518900 | Msa1312510:CDS |
| AGTCATACTCAGTTAATGGA+AGG | 0.616474 | 8_4:+9519900 | None:intergenic |
| GTGCTCAACGATAACACTAT+CGG | 0.618331 | 8_4:+9518461 | None:intergenic |
| GGAAAAGATACAATCACCGT+TGG | 0.621544 | 8_4:-9518594 | Msa1312510:CDS |
| TTTGACCACATTGAGATCAG+CGG | 0.628149 | 8_4:+9518913 | None:intergenic |
| GGTTCCTCCAGGTAGAAAGA+GGG | 0.629047 | 8_4:-9520587 | Msa1312510:CDS |
| TGTAGGTTATCAACATGGAG+TGG | 0.631248 | 8_4:-9519943 | Msa1312510:intron |
| TCGTTGATAATCTTCCTACA+GGG | 0.639680 | 8_4:-9522171 | Msa1312510:intron |
| ACAGGTTGCTGATGCAATGA+CGG | 0.641090 | 8_4:-9522254 | Msa1312510:CDS |
| TCCCTCTCTGTTTAGGAACG+AGG | 0.652781 | 8_4:-9520947 | Msa1312510:intron |
| AGCTCCCTCTTTCTACCTGG+AGG | 0.653342 | 8_4:+9520583 | None:intergenic |
| ACGTGTGCAACTTGGTGGCA+AGG | 0.654572 | 8_4:-9520875 | Msa1312510:CDS |
| ATGACGGTGGAGATGCACGC+TGG | 0.657627 | 8_4:-9522238 | Msa1312510:CDS |
| GTGAAGAAATCGAAGCGATG+GGG | 0.658037 | 8_4:-9522340 | Msa1312510:CDS |
| CAAGCAATACCAAAATGGCA+TGG | 0.658759 | 8_4:-9520073 | Msa1312510:CDS |
| CAATCTTTCCTAGACTGCTG+GGG | 0.658971 | 8_4:+9518306 | None:intergenic |
| TAGGTTATCAACATGGAGTG+GGG | 0.662335 | 8_4:-9519941 | Msa1312510:CDS |
| GACGGTGATCGGAGCTACGG+CGG | 0.662578 | 8_4:-9522398 | Msa1312510:CDS |
| AGAAAAGCAATTGAGAGACA+AGG | 0.664902 | 8_4:-9520348 | Msa1312510:CDS |
| ATTTGGAGGAATTGACACCT+CGG | 0.667035 | 8_4:+9520828 | None:intergenic |
| AATGTGATAGCCATGGATGG+TGG | 0.667416 | 8_4:-9518558 | Msa1312510:CDS |
| TCTCTGTTTAGGAACGAGGA+AGG | 0.672788 | 8_4:-9520943 | Msa1312510:intron |
| CTCATCCGCTGATCTCAATG+TGG | 0.677334 | 8_4:-9518918 | Msa1312510:CDS |
| CACCTTTCTCACTTCCAGCG+AGG | 0.678787 | 8_4:+9518698 | None:intergenic |
| ACTGATGTAGGTTATCAACA+TGG | 0.683335 | 8_4:-9519948 | Msa1312510:intron |
| GCAATTGTACCTGTTCACCA+GGG | 0.688661 | 8_4:+9519852 | None:intergenic |
| CTGCAGAAAGACGAGCACCA+CGG | 0.694987 | 8_4:+9518646 | None:intergenic |
| GATGCTGAGAGTTTAAACCC+TGG | 0.699870 | 8_4:-9519869 | Msa1312510:CDS |
| AAGAATGTGATAGCCATGGA+TGG | 0.701522 | 8_4:-9518561 | Msa1312510:CDS |
| TGGAGGCCGACATACAAACA+AGG | 0.703627 | 8_4:-9520155 | Msa1312510:CDS |
| CTCGCTGGAAGTGAGAAAGG+TGG | 0.705226 | 8_4:-9518697 | Msa1312510:CDS |
| CACGAAAGTTAGTTCCTCCG+AGG | 0.708493 | 8_4:+9520902 | None:intergenic |
| ACAGTCGGGACATTAGCTGG+AGG | 0.724132 | 8_4:-9520172 | Msa1312510:CDS |
| GGTTGCTGATGCAATGACGG+TGG | 0.729595 | 8_4:-9522251 | Msa1312510:CDS |
| TGTCAGTCGAGAATTTACCG+AGG | 0.797194 | 8_4:-9520845 | Msa1312510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATAAATAAACTGA+AGG | + | chr8_4:9518219-9518238 | None:intergenic | 10.0% |
| !!! | AAAATATTTTAATACTTTTC+AGG | + | chr8_4:9519802-9519821 | None:intergenic | 10.0% |
| !! | AAACTAAGTATAAAATGTAA+AGG | + | chr8_4:9520370-9520389 | None:intergenic | 15.0% |
| !!! | TTTTGTATCAACTATTTTTT+TGG | - | chr8_4:9522433-9522452 | Msa1312510:exon | 15.0% |
| !!! | TTTTATCAAATAAATACCAG+TGG | + | chr8_4:9518870-9518889 | None:intergenic | 20.0% |
| !!! | TTCTTTGTTTGTTTATAAGT+TGG | - | chr8_4:9518997-9519016 | Msa1312510:intron | 20.0% |
| !! | TTAAATGTTATGATAAGTGA+CGG | - | chr8_4:9519222-9519241 | Msa1312510:intron | 20.0% |
| !! | TTTATTGAATTTAGCTGTTA+TGG | - | chr8_4:9519329-9519348 | Msa1312510:intron | 20.0% |
| !! | TGTTTATTTAAGCTGTTTAT+CGG | - | chr8_4:9519356-9519375 | Msa1312510:intron | 20.0% |
| !! | ATATATAGACACATAAAAAG+TGG | + | chr8_4:9519568-9519587 | None:intergenic | 20.0% |
| !!! | AGATGTAATTGTTTTTCTAA+TGG | - | chr8_4:9519672-9519691 | Msa1312510:CDS | 20.0% |
| !! | CTATAAAAATTCAAAATGCT+CGG | + | chr8_4:9519779-9519798 | None:intergenic | 20.0% |
| !! | AAGAGTAAATAGTAATTGTT+AGG | + | chr8_4:9520042-9520061 | None:intergenic | 20.0% |
| !!! | TGAATCACATTTTTATAGAA+TGG | + | chr8_4:9520109-9520128 | None:intergenic | 20.0% |
| !! | ATTCTATAAAAATGTGATTC+AGG | - | chr8_4:9520108-9520127 | Msa1312510:CDS | 20.0% |
| !!! | TTCTGGAGTATAATTATTTT+TGG | - | chr8_4:9520541-9520560 | Msa1312510:CDS | 20.0% |
| !! | ATTAATAGCCTCATTTATTA+AGG | + | chr8_4:9520975-9520994 | None:intergenic | 20.0% |
| !! | AATTTGTACCTTAATATGAA+TGG | + | chr8_4:9521147-9521166 | None:intergenic | 20.0% |
| !! | TGATAAATCAAGTGAATTTA+AGG | - | chr8_4:9521505-9521524 | Msa1312510:intron | 20.0% |
| !! | GATAAATCAAGTGAATTTAA+GGG | - | chr8_4:9521506-9521525 | Msa1312510:intron | 20.0% |
| !! | TATAAAATTCTTGAATTCCT+TGG | - | chr8_4:9521729-9521748 | Msa1312510:intron | 20.0% |
| !!! | TCTTTTTGGAAAACATTTAT+CGG | + | chr8_4:9521943-9521962 | None:intergenic | 20.0% |
| !!! | TTTCCAAAAAGACTTTTTTT+AGG | - | chr8_4:9521951-9521970 | Msa1312510:intron | 20.0% |
| !!! | TTCCAAAAAGACTTTTTTTA+GGG | - | chr8_4:9521952-9521971 | Msa1312510:intron | 20.0% |
| !! | AAACAAAAAAGAATGAAGTT+AGG | + | chr8_4:9522031-9522050 | None:intergenic | 20.0% |
| !! | TTAGCAATTATCATGTTATT+CGG | - | chr8_4:9522409-9522428 | Msa1312510:CDS | 20.0% |
| !!! | ATCTTTTTGGGTTTTAATGT+CGG | + | chr8_4:9518343-9518362 | None:intergenic | 25.0% |
| ! | ACATTAAAACCCAAAAAGAT+GGG | - | chr8_4:9518343-9518362 | Msa1312510:three_prime_UTR | 25.0% |
| ! | TAGATCAACATGATTAAGAT+TGG | + | chr8_4:9518652-9518671 | None:intergenic | 25.0% |
| ! | GAGATTTATTTAGAGAATGT+TGG | - | chr8_4:9519035-9519054 | Msa1312510:intron | 25.0% |
| !! | GTAATTGTTGATAAAGTAGA+CGG | - | chr8_4:9519158-9519177 | Msa1312510:intron | 25.0% |
| ! | TCATTCAAACTTCAATAAGA+AGG | + | chr8_4:9519396-9519415 | None:intergenic | 25.0% |
| ! | TAACAATAAATGAGCACAAA+TGG | + | chr8_4:9519427-9519446 | None:intergenic | 25.0% |
| !!! | ATAAACTGATTTTGTACTAG+AGG | - | chr8_4:9519447-9519466 | Msa1312510:intron | 25.0% |
| ! | AGTTATGAAATGTGACTAAT+GGG | + | chr8_4:9519716-9519735 | None:intergenic | 25.0% |
| ! | GATTAAAGCAAATAACTTTC+TGG | + | chr8_4:9520066-9520085 | None:intergenic | 25.0% |
| !! | GCGTTTTCAATTAATTTTTC+TGG | - | chr8_4:9520524-9520543 | Msa1312510:CDS | 25.0% |
| ! | TTATATATTCAGCATCCAAT+AGG | - | chr8_4:9520579-9520598 | Msa1312510:CDS | 25.0% |
| ! | CTTATTTGCCTTAATAAATG+AGG | - | chr8_4:9520964-9520983 | Msa1312510:intron | 25.0% |
| !!! | ACTTTTGAGAAGATAATATC+TGG | - | chr8_4:9521027-9521046 | Msa1312510:intron | 25.0% |
| !! | ATAATATCTGGAATGTACTT+GGG | - | chr8_4:9521039-9521058 | Msa1312510:intron | 25.0% |
| ! | TGAAAGTTCCATTCATATTA+AGG | - | chr8_4:9521136-9521155 | Msa1312510:intron | 25.0% |
| ! | TTTCTGATAATCTAATTGAG+AGG | - | chr8_4:9521270-9521289 | Msa1312510:intron | 25.0% |
| ! | ATAATCTAATTGAGAGGTTA+TGG | - | chr8_4:9521276-9521295 | Msa1312510:intron | 25.0% |
| !! | TTATGCTTTATATCCTGTTT+TGG | - | chr8_4:9521314-9521333 | Msa1312510:intron | 25.0% |
| ! | CTTGATTTATCATTGTTAAG+TGG | + | chr8_4:9521497-9521516 | None:intergenic | 25.0% |
| !!! | TAGAATTTTAAAGTTCGATG+TGG | - | chr8_4:9521991-9522010 | Msa1312510:intron | 25.0% |
| ! | ATGATAATTGCTAAACATCA+AGG | + | chr8_4:9522403-9522422 | None:intergenic | 25.0% |
| ! | GAGCAAATATTGCAAAAAAA+AGG | + | chr8_4:9522524-9522543 | None:intergenic | 25.0% |
| !! | GATGATTTTGGGAAGATTTT+AGG | + | chr8_4:9518193-9518212 | None:intergenic | 30.0% |
| ! | ACTGAAGGATAGATGATTTT+GGG | + | chr8_4:9518204-9518223 | None:intergenic | 30.0% |
| ! | AACTGAAGGATAGATGATTT+TGG | + | chr8_4:9518205-9518224 | None:intergenic | 30.0% |
| GACATTAAAACCCAAAAAGA+TGG | - | chr8_4:9518342-9518361 | Msa1312510:three_prime_UTR | 30.0% | |
| AAAAGCAATAGCGATATTGA+AGG | - | chr8_4:9518465-9518484 | Msa1312510:CDS | 30.0% | |
| !! | TATAAGTTGGCTTTGTATCA+TGG | - | chr8_4:9519010-9519029 | Msa1312510:intron | 30.0% |
| ! | ACGAATGTTGATAAAGTAGA+TGG | - | chr8_4:9519275-9519294 | Msa1312510:intron | 30.0% |
| CAGTTATGAAATGTGACTAA+TGG | + | chr8_4:9519717-9519736 | None:intergenic | 30.0% | |
| TGAAGAAAGTGAAGATTTCA+AGG | - | chr8_4:9520174-9520193 | Msa1312510:CDS | 30.0% | |
| TGTAAAGGTGAAAGAATAAC+TGG | + | chr8_4:9520355-9520374 | None:intergenic | 30.0% | |
| !!! | AGTTTTGTTGTCGTTTACAT+AGG | - | chr8_4:9520385-9520404 | Msa1312510:intron | 30.0% |
| TGATATGAACATAACAGCTT+TGG | - | chr8_4:9520460-9520479 | Msa1312510:intron | 30.0% | |
| TCAATATATGAGACTGATGT+AGG | - | chr8_4:9520822-9520841 | Msa1312510:CDS | 30.0% | |
| GAATAGTCATACTCAGTTAA+TGG | + | chr8_4:9520889-9520908 | None:intergenic | 30.0% | |
| CATGTATGGTTGAAAATTTC+AGG | + | chr8_4:9521004-9521023 | None:intergenic | 30.0% | |
| TTCTCAAAAGTCTACATGTA+TGG | + | chr8_4:9521018-9521037 | None:intergenic | 30.0% | |
| ! | GATAATATCTGGAATGTACT+TGG | - | chr8_4:9521038-9521057 | Msa1312510:intron | 30.0% |
| ! | TCGTAGAGTACTATACAAAA+TGG | - | chr8_4:9521071-9521090 | Msa1312510:intron | 30.0% |
| !! | AATGGAACTTTCAGTTTTGA+AGG | + | chr8_4:9521129-9521148 | None:intergenic | 30.0% |
| ATAGTAACATTCGTGATTGT+TGG | - | chr8_4:9521204-9521223 | Msa1312510:intron | 30.0% | |
| ! | GAGGTTATGGAGAATTTTTA+TGG | - | chr8_4:9521289-9521308 | Msa1312510:intron | 30.0% |
| ! | AAAGTGAATTTTCTGACCTT+AGG | - | chr8_4:9521368-9521387 | Msa1312510:intron | 30.0% |
| ! | AGTTTTCACTATCTTCTGTT+TGG | + | chr8_4:9521656-9521675 | None:intergenic | 30.0% |
| ! | TATAAGAAGCACATTAACCA+AGG | + | chr8_4:9521749-9521768 | None:intergenic | 30.0% |
| TCGATGATAATACTGGTAAA+GGG | + | chr8_4:9521777-9521796 | None:intergenic | 30.0% | |
| TTCGATGATAATACTGGTAA+AGG | + | chr8_4:9521778-9521797 | None:intergenic | 30.0% | |
| AAGAACTTCGATGATAATAC+TGG | + | chr8_4:9521784-9521803 | None:intergenic | 30.0% | |
| ! | GACCCTAAAAAAAGTCTTTT+TGG | + | chr8_4:9521957-9521976 | None:intergenic | 30.0% |
| AATACCATAAAAGAGTTGCT+TGG | - | chr8_4:9522287-9522306 | Msa1312510:CDS | 30.0% | |
| ! | CTAATTTCTACATTGCTGTT+AGG | - | chr8_4:9522584-9522603 | Msa1312510:five_prime_UTR | 30.0% |
| AAAACCCAAAAAGATGGGAA+AGG | - | chr8_4:9518348-9518367 | Msa1312510:three_prime_UTR | 35.0% | |
| AGCGATATTGAAGGAATTTG+AGG | - | chr8_4:9518474-9518493 | Msa1312510:CDS | 35.0% | |
| !! | TTCGTTGATAATCTTCCTAC+AGG | - | chr8_4:9518610-9518629 | Msa1312510:CDS | 35.0% |
| !! | TCGTTGATAATCTTCCTACA+GGG | - | chr8_4:9518611-9518630 | Msa1312510:CDS | 35.0% |
| TCAAAAAAGTGATACCCTGT+AGG | + | chr8_4:9518628-9518647 | None:intergenic | 35.0% | |
| TCGGCTATACGAATGAAATT+AGG | + | chr8_4:9518739-9518758 | None:intergenic | 35.0% | |
| ! | GATTGTGAACATTTGTTGCT+TGG | - | chr8_4:9519521-9519540 | Msa1312510:intron | 35.0% |
| GAAGTTGCTAGTTGACAATT+GGG | - | chr8_4:9519642-9519661 | Msa1312510:intron | 35.0% | |
| ! | GGAAGGACTATTTTATGCAT+TGG | - | chr8_4:9519856-9519875 | Msa1312510:intron | 35.0% |
| ! | CTATTTTATGCATTGGACCT+CGG | - | chr8_4:9519863-9519882 | Msa1312510:CDS | 35.0% |
| GTCAATTCCTCCAAATTTGA+TGG | - | chr8_4:9519961-9519980 | Msa1312510:intron | 35.0% | |
| ! | ATTCCTCCAAATTTGATGGT+CGG | - | chr8_4:9519965-9519984 | Msa1312510:intron | 35.0% |
| GGTCATGTTTCTCATACAAA+TGG | + | chr8_4:9520088-9520107 | None:intergenic | 35.0% | |
| AAGCAAACATCCATTTCTTC+TGG | - | chr8_4:9520247-9520266 | Msa1312510:intron | 35.0% | |
| AGCAAACATCCATTTCTTCT+GGG | - | chr8_4:9520248-9520267 | Msa1312510:intron | 35.0% | |
| AACCTTATCAACTGGACAAA+AGG | - | chr8_4:9520271-9520290 | Msa1312510:intron | 35.0% | |
| CATCAAAGCAATTAGGATTC+AGG | + | chr8_4:9520322-9520341 | None:intergenic | 35.0% | |
| !! | GGAAAAGCATCAAAGCAATT+AGG | + | chr8_4:9520329-9520348 | None:intergenic | 35.0% |
| AGGTGAAAGAATAACTGGAA+AGG | + | chr8_4:9520350-9520369 | None:intergenic | 35.0% | |
| ! | TTGTTGTCGTTTACATAGGT+TGG | - | chr8_4:9520389-9520408 | Msa1312510:intron | 35.0% |
| AGAAAAGCAATTGAGAGACA+AGG | - | chr8_4:9520434-9520453 | Msa1312510:intron | 35.0% | |
| CAATAGGTCAATGATACAGT+CGG | - | chr8_4:9520595-9520614 | Msa1312510:CDS | 35.0% | |
| AATAGGTCAATGATACAGTC+GGG | - | chr8_4:9520596-9520615 | Msa1312510:CDS | 35.0% | |
| ! | TGACATCCTTGTTTGTATGT+CGG | + | chr8_4:9520636-9520655 | None:intergenic | 35.0% |
| !!! | GTCATTGCTGCTGTTATTTT+AGG | - | chr8_4:9520652-9520671 | Msa1312510:CDS | 35.0% |
| ACTGATGTAGGTTATCAACA+TGG | - | chr8_4:9520834-9520853 | Msa1312510:CDS | 35.0% | |
| AGTCATACTCAGTTAATGGA+AGG | + | chr8_4:9520885-9520904 | None:intergenic | 35.0% | |
| AATGTTACTATGCATGCAAG+TGG | + | chr8_4:9521195-9521214 | None:intergenic | 35.0% | |
| TTTCTCCTCATAACTTGAGA+TGG | - | chr8_4:9521247-9521266 | Msa1312510:intron | 35.0% | |
| AGAAACCATCTCAAGTTATG+AGG | + | chr8_4:9521255-9521274 | None:intergenic | 35.0% | |
| ! | TCTTTTTCCAGTACCTTCTT+AGG | - | chr8_4:9521441-9521460 | Msa1312510:intron | 35.0% |
| GTTTGGAGAGAAATTGAACT+TGG | + | chr8_4:9521639-9521658 | None:intergenic | 35.0% | |
| TTGTGTAAGCAATATTCGCA+TGG | + | chr8_4:9521699-9521718 | None:intergenic | 35.0% | |
| CGATGATAATACTGGTAAAG+GGG | + | chr8_4:9521776-9521795 | None:intergenic | 35.0% | |
| !! | CTCTAAAATCTCCTTCAGTT+TGG | + | chr8_4:9521896-9521915 | None:intergenic | 35.0% |
| ! | CAAACTGAAGGAGATTTTAG+AGG | - | chr8_4:9521894-9521913 | Msa1312510:intron | 35.0% |
| TCGATGTGGTAAACTTTCAT+TGG | - | chr8_4:9522005-9522024 | Msa1312510:intron | 35.0% | |
| ! | TTCACCAAGCAACTCTTTTA+TGG | + | chr8_4:9522294-9522313 | None:intergenic | 35.0% |
| ! | ATAAAAGAGTTGCTTGGTGA+AGG | - | chr8_4:9522293-9522312 | Msa1312510:CDS | 35.0% |
| GACATGCACACATATACTTT+AGG | - | chr8_4:9522498-9522517 | Msa1312510:five_prime_UTR | 35.0% | |
| TAGTACATTGCAGAATTCTC+AGG | + | chr8_4:9522567-9522586 | None:intergenic | 35.0% | |
| ! | ACCACCTTTCCCATCTTTTT+GGG | + | chr8_4:9518355-9518374 | None:intergenic | 40.0% |
| !! | AGGCTTTGAAACATGTACAC+CGG | - | chr8_4:9518776-9518795 | Msa1312510:intron | 40.0% |
| ! | CACCACTGGTATTTGAAACA+TGG | - | chr8_4:9518817-9518836 | Msa1312510:intron | 40.0% |
| GTCCATGTTTCAAATACCAG+TGG | + | chr8_4:9518822-9518841 | None:intergenic | 40.0% | |
| ! | GGTATTTGAAACATGGACAC+CGG | - | chr8_4:9518824-9518843 | Msa1312510:intron | 40.0% |
| CATATGTGTCTGTGTCATGT+TGG | - | chr8_4:9518909-9518928 | Msa1312510:CDS | 40.0% | |
| CGAAGTTGCTAGTTGACAAT+TGG | - | chr8_4:9519641-9519660 | Msa1312510:intron | 40.0% | |
| CTTTACATCCCTCTCTGTTT+AGG | - | chr8_4:9519828-9519847 | Msa1312510:intron | 40.0% | |
| ATTTGGAGGAATTGACACCT+CGG | + | chr8_4:9519957-9519976 | None:intergenic | 40.0% | |
| ! | TTCCTCCAAATTTGATGGTC+GGG | - | chr8_4:9519966-9519985 | Msa1312510:intron | 40.0% |
| TTGCTTGACAGGAAAGGAAA+AGG | + | chr8_4:9520233-9520252 | None:intergenic | 40.0% | |
| GAAATGGATGTTTGCTTGAC+AGG | + | chr8_4:9520244-9520263 | None:intergenic | 40.0% | |
| GATAAGGTTCCCAGAAGAAA+TGG | + | chr8_4:9520260-9520279 | None:intergenic | 40.0% | |
| !! | AGCCTTTTGTCCAGTTGATA+AGG | + | chr8_4:9520276-9520295 | None:intergenic | 40.0% |
| CGACTGTATCATTGACCTAT+TGG | + | chr8_4:9520597-9520616 | None:intergenic | 40.0% | |
| !!! | GCTGCTGTTATTTTAGGTAC+CGG | - | chr8_4:9520658-9520677 | Msa1312510:intron | 40.0% |
| GTGCTCAAGCAATACCAAAA+TGG | - | chr8_4:9520704-9520723 | Msa1312510:intron | 40.0% | |
| CAAGCAATACCAAAATGGCA+TGG | - | chr8_4:9520709-9520728 | Msa1312510:intron | 40.0% | |
| TGTAGGTTATCAACATGGAG+TGG | - | chr8_4:9520839-9520858 | Msa1312510:CDS | 40.0% | |
| GTAGGTTATCAACATGGAGT+GGG | - | chr8_4:9520840-9520859 | Msa1312510:CDS | 40.0% | |
| TAGGTTATCAACATGGAGTG+GGG | - | chr8_4:9520841-9520860 | Msa1312510:CDS | 40.0% | |
| ! | TTAATGGAAGGTGTGATGAC+CGG | + | chr8_4:9520873-9520892 | None:intergenic | 40.0% |
| ACAAAATGGCTGAAGAAGCT+TGG | - | chr8_4:9521085-9521104 | Msa1312510:intron | 40.0% | |
| !!! | GCTGAAGAAGCTTGGTTTTT+TGG | - | chr8_4:9521093-9521112 | Msa1312510:intron | 40.0% |
| GTAACATTCGTGATTGTTGG+TGG | - | chr8_4:9521207-9521226 | Msa1312510:intron | 40.0% | |
| !!! | TTATATCCTGTTTTGGCCTC+TGG | - | chr8_4:9521321-9521340 | Msa1312510:intron | 40.0% |
| !! | TGGCCTCATTTTAGTGTTCA+GGG | - | chr8_4:9521416-9521435 | Msa1312510:intron | 40.0% |
| ATGCCCTGAACACTAAAATG+AGG | + | chr8_4:9521422-9521441 | None:intergenic | 40.0% | |
| ! | GATGATTCCTAAGAAGGTAC+TGG | + | chr8_4:9521451-9521470 | None:intergenic | 40.0% |
| ! | GCTCTAGATGATTCCTAAGA+AGG | + | chr8_4:9521457-9521476 | None:intergenic | 40.0% |
| ACCATAAGAATTTGACGTGC+AGG | - | chr8_4:9521812-9521831 | Msa1312510:intron | 40.0% | |
| TCCTGCACGTCAAATTCTTA+TGG | + | chr8_4:9521816-9521835 | None:intergenic | 40.0% | |
| TTTGACCACATTGAGATCAG+CGG | + | chr8_4:9521872-9521891 | None:intergenic | 40.0% | |
| TGTGGTCAAAACCAAACTGA+AGG | - | chr8_4:9521882-9521901 | Msa1312510:intron | 40.0% | |
| TTAGATATCTGATACCTCGC+TGG | - | chr8_4:9522070-9522089 | Msa1312510:intron | 40.0% | |
| ! | GTGGGAATTCTGAAGAAGTT+GGG | - | chr8_4:9522167-9522186 | Msa1312510:intron | 40.0% |
| GGAAAAGATACAATCACCGT+TGG | - | chr8_4:9522188-9522207 | Msa1312510:CDS | 40.0% | |
| TCAGAAGAATGTGATAGCCA+TGG | - | chr8_4:9522217-9522236 | Msa1312510:CDS | 40.0% | |
| AAGAATGTGATAGCCATGGA+TGG | - | chr8_4:9522221-9522240 | Msa1312510:CDS | 40.0% | |
| GTGCTCAACGATAACACTAT+CGG | + | chr8_4:9522324-9522343 | None:intergenic | 40.0% | |
| TCAATCTTTCCTAGACTGCT+GGG | + | chr8_4:9522480-9522499 | None:intergenic | 40.0% | |
| ACCCAAAAAGATGGGAAAGG+TGG | - | chr8_4:9518351-9518370 | Msa1312510:three_prime_UTR | 45.0% | |
| ! | CACCACCTTTCCCATCTTTT+TGG | + | chr8_4:9518356-9518375 | None:intergenic | 45.0% |
| CAAAAAGATGGGAAAGGTGG+TGG | - | chr8_4:9518354-9518373 | Msa1312510:three_prime_UTR | 45.0% | |
| ACGTGAAGAAATCGAAGCGA+TGG | - | chr8_4:9518440-9518459 | Msa1312510:CDS | 45.0% | |
| CGTGAAGAAATCGAAGCGAT+GGG | - | chr8_4:9518441-9518460 | Msa1312510:CDS | 45.0% | |
| GTGAAGAAATCGAAGCGATG+GGG | - | chr8_4:9518442-9518461 | Msa1312510:CDS | 45.0% | |
| ACCAACGTTGAAGCTGAAAC+AGG | - | chr8_4:9518510-9518529 | Msa1312510:CDS | 45.0% | |
| ACCTGTTTCAGCTTCAACGT+TGG | + | chr8_4:9518514-9518533 | None:intergenic | 45.0% | |
| ACAGGTTGCTGATGCAATGA+CGG | - | chr8_4:9518528-9518547 | Msa1312510:CDS | 45.0% | |
| ! | AAAGCCTTATCCCACCAAGT+GGG | + | chr8_4:9518763-9518782 | None:intergenic | 45.0% |
| ! | GACTTGTTTAGTGTCGTGTC+CGG | + | chr8_4:9518846-9518865 | None:intergenic | 45.0% |
| GACACTAAACAAGTCACCAC+TGG | - | chr8_4:9518851-9518870 | Msa1312510:intron | 45.0% | |
| TCGATGCTAGAGAGTTGTTG+AGG | - | chr8_4:9518962-9518981 | Msa1312510:intron | 45.0% | |
| TCCTCGTTCCTAAACAGAGA+GGG | + | chr8_4:9519839-9519858 | None:intergenic | 45.0% | |
| TTCCTCGTTCCTAAACAGAG+AGG | + | chr8_4:9519840-9519859 | None:intergenic | 45.0% | |
| TCTCTGTTTAGGAACGAGGA+AGG | - | chr8_4:9519839-9519858 | Msa1312510:intron | 45.0% | |
| ! | TTTTATGCATTGGACCTCGG+AGG | - | chr8_4:9519866-9519885 | Msa1312510:CDS | 45.0% |
| CGTGTATTACGTGTGCAACT+TGG | - | chr8_4:9519899-9519918 | Msa1312510:CDS | 45.0% | |
| GTATTACGTGTGCAACTTGG+TGG | - | chr8_4:9519902-9519921 | Msa1312510:CDS | 45.0% | |
| TGTCAGTCGAGAATTTACCG+AGG | - | chr8_4:9519937-9519956 | Msa1312510:CDS | 45.0% | |
| GATGTCCCGACCATCAAATT+TGG | + | chr8_4:9519974-9519993 | None:intergenic | 45.0% | |
| GAAGATTTCAAGGTTCCTCC+AGG | - | chr8_4:9520184-9520203 | Msa1312510:CDS | 45.0% | |
| GGATGTTTGCTTGACAGGAA+AGG | + | chr8_4:9520239-9520258 | None:intergenic | 45.0% | |
| ! | CTTCTGGGAACCTTATCAAC+TGG | - | chr8_4:9520263-9520282 | Msa1312510:intron | 45.0% |
| !! | GTCGTTTACATAGGTTGGTC+AGG | - | chr8_4:9520394-9520413 | Msa1312510:intron | 45.0% |
| !! | ATAGGTTGGTCAGGATGTTG+TGG | - | chr8_4:9520403-9520422 | Msa1312510:intron | 45.0% |
| !! | GGCAAATCACCATGCCATTT+TGG | + | chr8_4:9520721-9520740 | None:intergenic | 45.0% |
| TTTGCCCAAGTCTGGAGAAA+TGG | - | chr8_4:9520735-9520754 | Msa1312510:intron | 45.0% | |
| CTCACCATTTCTCCAGACTT+GGG | + | chr8_4:9520742-9520761 | None:intergenic | 45.0% | |
| ACTCACCATTTCTCCAGACT+TGG | + | chr8_4:9520743-9520762 | None:intergenic | 45.0% | |
| GATGCTGAGAGTTTAAACCC+TGG | - | chr8_4:9520913-9520932 | Msa1312510:CDS | 45.0% | |
| GAGTTTAAACCCTGGTGAAC+AGG | - | chr8_4:9520921-9520940 | Msa1312510:CDS | 45.0% | |
| GCAATTGTACCTGTTCACCA+GGG | + | chr8_4:9520933-9520952 | None:intergenic | 45.0% | |
| AAACTATCCTGCCTCGTTGA+AGG | + | chr8_4:9521394-9521413 | None:intergenic | 45.0% | |
| !! | AACGAGGCAGGATAGTTTTG+TGG | - | chr8_4:9521396-9521415 | Msa1312510:intron | 45.0% |
| !! | GTGGCCTCATTTTAGTGTTC+AGG | - | chr8_4:9521415-9521434 | Msa1312510:intron | 45.0% |
| TGCAATATTGTTGCTACCCG+TGG | - | chr8_4:9522119-9522138 | Msa1312510:intron | 45.0% | |
| ! | CGTGGGAATTCTGAAGAAGT+TGG | - | chr8_4:9522166-9522185 | Msa1312510:intron | 45.0% |
| AATGTGATAGCCATGGATGG+TGG | - | chr8_4:9522224-9522243 | Msa1312510:CDS | 45.0% | |
| CTCATATAGTCCACCATCCA+TGG | + | chr8_4:9522237-9522256 | None:intergenic | 45.0% | |
| ATCGTTGAGCACTCAAACGA+TGG | - | chr8_4:9522332-9522351 | Msa1312510:CDS | 45.0% | |
| TCAAACGATGGTTCAGGAAC+TGG | - | chr8_4:9522344-9522363 | Msa1312510:CDS | 45.0% | |
| TAGACTGCTGGGGTCAAAAT+TGG | + | chr8_4:9522469-9522488 | None:intergenic | 45.0% | |
| !! | AATTTTGACCCCAGCAGTCT+AGG | - | chr8_4:9522468-9522487 | Msa1312510:five_prime_UTR | 45.0% |
| CAATCTTTCCTAGACTGCTG+GGG | + | chr8_4:9522479-9522498 | None:intergenic | 45.0% | |
| GTCAATCTTTCCTAGACTGC+TGG | + | chr8_4:9522481-9522500 | None:intergenic | 45.0% | |
| !!! | TTTTATTTTTATATTTTGAT+TGG | + | chr8_4:9518244-9518263 | None:intergenic | 5.0% |
| !!! | TTTAAAATTTCTATAAAAAA+AGG | - | chr8_4:9519100-9519119 | Msa1312510:intron | 5.0% |
| !! | TTAAAATTTCTATAAAAAAA+GGG | - | chr8_4:9519101-9519120 | Msa1312510:intron | 5.0% |
| ! | GAGAGAGTGTGCGTGTACTT+TGG | - | chr8_4:9518289-9518308 | Msa1312510:three_prime_UTR | 50.0% |
| TTCGTATAGCCGATCCCACT+TGG | - | chr8_4:9518746-9518765 | Msa1312510:intron | 50.0% | |
| TATAGCCGATCCCACTTGGT+GGG | - | chr8_4:9518750-9518769 | Msa1312510:intron | 50.0% | |
| CTTATCCCACCAAGTGGGAT+CGG | + | chr8_4:9518758-9518777 | None:intergenic | 50.0% | |
| ! | CAAAGCCTTATCCCACCAAG+TGG | + | chr8_4:9518764-9518783 | None:intergenic | 50.0% |
| GACGTGTTTAGTGTCGTGTC+CGG | + | chr8_4:9518798-9518817 | None:intergenic | 50.0% | |
| GACACTAAACACGTCACCAC+TGG | - | chr8_4:9518803-9518822 | Msa1312510:intron | 50.0% | |
| TCCCTCTCTGTTTAGGAACG+AGG | - | chr8_4:9519835-9519854 | Msa1312510:intron | 50.0% | |
| CACGAAAGTTAGTTCCTCCG+AGG | + | chr8_4:9519883-9519902 | None:intergenic | 50.0% | |
| GTCCCGACCATCAAATTTGG+AGG | + | chr8_4:9519971-9519990 | None:intergenic | 50.0% | |
| AGGTTCCTCCAGGTAGAAAG+AGG | - | chr8_4:9520194-9520213 | Msa1312510:intron | 50.0% | |
| GGTTCCTCCAGGTAGAAAGA+GGG | - | chr8_4:9520195-9520214 | Msa1312510:intron | 50.0% | |
| GATACAGTCGGGACATTAGC+TGG | - | chr8_4:9520607-9520626 | Msa1312510:CDS | 50.0% | |
| TGGAGGCCGACATACAAACA+AGG | - | chr8_4:9520627-9520646 | Msa1312510:CDS | 50.0% | |
| CACGTACGCTGCATTTGTTC+CGG | + | chr8_4:9520680-9520699 | None:intergenic | 50.0% | |
| ! | CATGGTGATTTGCCCAAGTC+TGG | - | chr8_4:9520727-9520746 | Msa1312510:intron | 50.0% |
| ACATGGAGTGGGGAAACTTC+CGG | - | chr8_4:9520851-9520870 | Msa1312510:CDS | 50.0% | |
| CGCAATTGTACCTGTTCACC+AGG | + | chr8_4:9520934-9520953 | None:intergenic | 50.0% | |
| !!! | ATCCTGTTTTGGCCTCTGGT+TGG | - | chr8_4:9521325-9521344 | Msa1312510:intron | 50.0% |
| AAGTAGTCTGCTCCAACCAG+AGG | + | chr8_4:9521340-9521359 | None:intergenic | 50.0% | |
| TGATGCATGGCAGACATGTC+AGG | + | chr8_4:9521841-9521860 | None:intergenic | 50.0% | |
| AGCGGATGAGTCATGATGCA+TGG | + | chr8_4:9521854-9521873 | None:intergenic | 50.0% | |
| CTCATCCGCTGATCTCAATG+TGG | - | chr8_4:9521864-9521883 | Msa1312510:intron | 50.0% | |
| TACCTCGCTGGAAGTGAGAA+AGG | - | chr8_4:9522082-9522101 | Msa1312510:intron | 50.0% | |
| TCTTTCTGCAGCTGGTATCG+TGG | - | chr8_4:9522148-9522167 | Msa1312510:intron | 50.0% | |
| CTTTCTGCAGCTGGTATCGT+GGG | - | chr8_4:9522149-9522168 | Msa1312510:intron | 50.0% | |
| AGATACAATCACCGTTGGCG+AGG | - | chr8_4:9522193-9522212 | Msa1312510:CDS | 50.0% | |
| GATACAATCACCGTTGGCGA+GGG | - | chr8_4:9522194-9522213 | Msa1312510:CDS | 50.0% | |
| ATTCTTCTGACCCTCGCCAA+CGG | + | chr8_4:9522207-9522226 | None:intergenic | 50.0% | |
| GAGCACTCAAACGATGGTTC+AGG | - | chr8_4:9522338-9522357 | Msa1312510:CDS | 50.0% | |
| GGTTGCTGATGCAATGACGG+TGG | - | chr8_4:9518531-9518550 | Msa1312510:CDS | 55.0% | |
| !! | CACGCTGGTCTTGCTTCTGA+TGG | - | chr8_4:9518559-9518578 | Msa1312510:CDS | 55.0% |
| !! | GCTGGTCTTGCTTCTGATGG+TGG | - | chr8_4:9518562-9518581 | Msa1312510:CDS | 55.0% |
| GTATAGCCGATCCCACTTGG+TGG | - | chr8_4:9518749-9518768 | Msa1312510:intron | 55.0% | |
| ! | CGATCCCACTTGGTGGGATA+AGG | - | chr8_4:9518756-9518775 | Msa1312510:intron | 55.0% |
| ! | ACGTGTGCAACTTGGTGGCA+AGG | - | chr8_4:9519907-9519926 | Msa1312510:CDS | 55.0% |
| ! | GTGCAACTTGGTGGCAAGGA+TGG | - | chr8_4:9519911-9519930 | Msa1312510:CDS | 55.0% |
| AGCTCCCTCTTTCTACCTGG+AGG | + | chr8_4:9520202-9520221 | None:intergenic | 55.0% | |
| CCTAGCTCCCTCTTTCTACC+TGG | + | chr8_4:9520205-9520224 | None:intergenic | 55.0% | |
| CCAGGTAGAAAGAGGGAGCT+AGG | - | chr8_4:9520202-9520221 | Msa1312510:intron | 55.0% | |
| ACAGTCGGGACATTAGCTGG+AGG | - | chr8_4:9520610-9520629 | Msa1312510:CDS | 55.0% | |
| CGGAACAAATGCAGCGTACG+TGG | - | chr8_4:9520678-9520697 | Msa1312510:intron | 55.0% | |
| CTCCAACCAGAGGCCAAAAC+AGG | + | chr8_4:9521330-9521349 | None:intergenic | 55.0% | |
| CTGACCTTAGGCCTTCAACG+AGG | - | chr8_4:9521380-9521399 | Msa1312510:intron | 55.0% | |
| CACCTTTCTCACTTCCAGCG+AGG | + | chr8_4:9522087-9522106 | None:intergenic | 55.0% | |
| CTCGCTGGAAGTGAGAAAGG+TGG | - | chr8_4:9522085-9522104 | Msa1312510:intron | 55.0% | |
| TGCAGAAAGACGAGCACCAC+GGG | + | chr8_4:9522138-9522157 | None:intergenic | 55.0% | |
| CTGCAGAAAGACGAGCACCA+CGG | + | chr8_4:9522139-9522158 | None:intergenic | 55.0% | |
| ! | AAAGGTGGTGGCGTGTGCGA+CGG | - | chr8_4:9518366-9518385 | Msa1312510:three_prime_UTR | 60.0% |
| TGCGACGGTGATCGGAGCTA+CGG | - | chr8_4:9518381-9518400 | Msa1312510:exon | 60.0% | |
| ATGACGGTGGAGATGCACGC+TGG | - | chr8_4:9518544-9518563 | Msa1312510:CDS | 60.0% | |
| CCTGCCTCGTTGAAGGCCTA+AGG | + | chr8_4:9521387-9521406 | None:intergenic | 60.0% | |
| CCTTAGGCCTTCAACGAGGC+AGG | - | chr8_4:9521384-9521403 | Msa1312510:intron | 60.0% | |
| GGTGCTCGTCTTTCTGCAGC+TGG | - | chr8_4:9522140-9522159 | Msa1312510:intron | 60.0% | |
| GTGGCGTGTGCGACGGTGAT+CGG | - | chr8_4:9518373-9518392 | Msa1312510:exon | 65.0% | |
| GACGGTGATCGGAGCTACGG+CGG | - | chr8_4:9518384-9518403 | Msa1312510:exon | 65.0% | |
| AGCTACGGCGGCGTGTGTGG+TGG | - | chr8_4:9518396-9518415 | Msa1312510:CDS | 70.0% | |
| CGGAGCTACGGCGGCGTGTG+TGG | - | chr8_4:9518393-9518412 | Msa1312510:CDS | 75.0% | |
| ! | GGCGGCGTGTGTGGTGGCGA+CGG | - | chr8_4:9518402-9518421 | Msa1312510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 9518178 | 9522626 | 9518178 | ID=Msa1312510;Name=Msa1312510 |
| chr8_4 | mRNA | 9518178 | 9522626 | 9518178 | ID=Msa1312510-mRNA-1;Parent=Msa1312510;Name=Msa1312510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=183|1|1|1|1|1|9|214|494 |
| chr8_4 | exon | 9518178 | 9518730 | 9518178 | ID=Msa1312510-mRNA-1:exon:3539;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9518889 | 9518970 | 9518889 | ID=Msa1312510-mRNA-1:exon:3538;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9519647 | 9519777 | 9519647 | ID=Msa1312510-mRNA-1:exon:3537;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9519862 | 9519960 | 9519862 | ID=Msa1312510-mRNA-1:exon:3536;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9520048 | 9520203 | 9520048 | ID=Msa1312510-mRNA-1:exon:3535;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9520323 | 9520397 | 9520323 | ID=Msa1312510-mRNA-1:exon:3534;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9520492 | 9520674 | 9520492 | ID=Msa1312510-mRNA-1:exon:3533;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9520807 | 9520954 | 9520807 | ID=Msa1312510-mRNA-1:exon:3532;Parent=Msa1312510-mRNA-1 |
| chr8_4 | exon | 9522172 | 9522626 | 9522172 | ID=Msa1312510-mRNA-1:exon:3531;Parent=Msa1312510-mRNA-1 |
| chr8_4 | five_prime_UTR | 9522444 | 9522626 | 9522444 | ID=Msa1312510-mRNA-1:five_prime_utr;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9522172 | 9522443 | 9522172 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9520807 | 9520954 | 9520807 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9520492 | 9520674 | 9520492 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9520323 | 9520397 | 9520323 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9520048 | 9520203 | 9520048 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9519862 | 9519960 | 9519862 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9519647 | 9519777 | 9519647 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9518889 | 9518970 | 9518889 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | CDS | 9518392 | 9518730 | 9518392 | ID=Msa1312510-mRNA-1:cds;Parent=Msa1312510-mRNA-1 |
| chr8_4 | three_prime_UTR | 9518178 | 9518391 | 9518178 | ID=Msa1312510-mRNA-1:three_prime_utr;Parent=Msa1312510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
