AlfalfaGEDB | Msa1401390

M. sativa cultivar zhongmu-4 / Msa1401390

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF11891.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401390	XP_003607364.1	97.194	392	4	5	1	389	1	388	0.0	744

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401390	sp\|Q94CJ5\|RER4_ARATH	76.157	281	67	0	109	389	103	383	8.05e-162	462

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401390	G7JRM8	97.194	392	4	5	1	389	1	388	0.0	744

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037410	Msa1401390	0.835999	1.209967e-56	-8.615850e-47
Msa0074030	Msa1401390	0.803950	2.728793e-49	-8.615850e-47
Msa0081070	Msa1401390	0.802708	4.934528e-49	-8.615850e-47
Msa0116130	Msa1401390	0.839688	1.364516e-57	-8.615850e-47
Msa0116670	Msa1401390	0.830518	2.807983e-55	-8.615850e-47
Msa0118710	Msa1401390	0.815574	8.621976e-52	-8.615850e-47
Msa0137610	Msa1401390	-0.803064	4.166735e-49	-8.615850e-47
Msa0138920	Msa1401390	0.811254	7.675022e-51	-8.615850e-47
Msa0167480	Msa1401390	0.806410	8.337722e-50	-8.615850e-47
Msa0173530	Msa1401390	0.827772	1.300720e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401390	MtrunA17_Chr4g0039291	97.194	392	4	5	1	389	1	388	0.0	744
Msa1401390	MtrunA17_Chr4g0020011	72.598	281	77	0	109	389	97	377	4.52e-152	434
Msa1401390	MtrunA17_Chr3g0090071	64.158	279	98	1	111	389	111	387	2.40e-130	379
Msa1401390	MtrunA17_Chr3g0114241	34.828	290	176	5	110	389	430	716	7.55e-49	176
Msa1401390	MtrunA17_Chr2g0320711	31.502	273	174	5	125	389	168	435	7.12e-34	130
Msa1401390	MtrunA17_Chr7g0240091	31.884	276	171	7	124	389	180	448	2.89e-30	120
Msa1401390	MtrunA17_Chr7g0245291	30.472	233	145	4	159	389	108	325	1.69e-24	103
Msa1401390	MtrunA17_Chr7g0245261	31.633	196	123	3	159	352	101	287	3.43e-21	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401390	AT5G12470.1	76.157	281	67	0	109	389	103	383	8.18e-163	462
Msa1401390	AT3G56140.2	35.211	284	175	4	114	389	207	489	1.23e-52	183
Msa1401390	AT3G56140.1	35.211	284	175	4	114	389	426	708	2.47e-51	183
Msa1401390	AT3G56140.3	35.211	284	175	4	114	389	426	708	2.47e-51	183
Msa1401390	AT2G40400.2	34.375	288	180	4	110	389	413	699	6.01e-51	182
Msa1401390	AT2G40400.1	34.375	288	180	4	110	389	413	699	6.01e-51	182
Msa1401390	AT2G40400.3	34.034	238	149	3	110	339	413	650	5.96e-38	145
Msa1401390	AT5G22790.1	30.035	283	188	5	114	389	154	433	1.36e-31	124
Msa1401390	AT2G37860.3	29.964	277	175	7	124	389	164	432	6.40e-29	117
Msa1401390	AT2G37860.4	29.964	277	175	7	124	389	164	432	6.40e-29	117

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Find 128 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCGGCGGATTGAATG+AGG	0.564436	tig0022515:+22923	Msa1401390:CDS
AACAATGACGGACATGGACA+CGG	0.598016	tig0022515:+22873	Msa1401390:CDS
AACCTCTCAACTACAGACGC+CGG	0.638287	tig0022515:-23029	None:intergenic
AAGACCTGGAATGCATTATC+TGG	0.259642	tig0022515:-24832	None:intergenic
AAGGAATGGGGATGGGTTTC+AGG	0.239677	tig0022515:-27050	None:intergenic
AAGGAGTGATACGGAGACGG+AGG	0.622593	tig0022515:-22722	None:intergenic
AATGACGGACATGGACACGG+AGG	0.724089	tig0022515:+22876	Msa1401390:CDS
AATGACGGAGGAAAGAGCGG+CGG	0.719319	tig0022515:+22912	Msa1401390:CDS
AATTATTGAACAGAGGCTTT+TGG	0.323263	tig0022515:+26463	Msa1401390:CDS
ACCACTTGGAGTCAGTGCAG+GGG	0.698840	tig0022515:+24783	Msa1401390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATGAGAAGAAAGAGAAT+GGG	-	tig0022515:22655-22674	None:intergenic	30.0%
ATAGTGTAAGAATGAAACCT+TGG	-	tig0022515:23180-23199	None:intergenic	30.0%
AATGGAATTAAAGCTTGACA+AGG	+	tig0022515:23289-23308	Msa1401390:intron	30.0%
ATATGAAGCAGATTGAGATT+TGG	+	tig0022515:23556-23575	Msa1401390:intron	30.0%
TATGAAGCAGATTGAGATTT+GGG	+	tig0022515:23557-23576	Msa1401390:intron	30.0%
GGGATTGAATAGTTTGAATA+TGG	+	tig0022515:23741-23760	Msa1401390:intron	30.0%
GAGTTGTATGATTATTGAGT+AGG	+	tig0022515:23820-23839	Msa1401390:intron	30.0%
TGATTATTGAGTAGGAAGAT+TGG	+	tig0022515:23828-23847	Msa1401390:intron	30.0%
GATTATTGAGTAGGAAGATT+GGG	+	tig0022515:23829-23848	Msa1401390:intron	30.0%
TGAGAATATTCATACCACAT+CGG	-	tig0022515:24030-24049	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022515	gene	22527	27130	22527	ID=Msa1401390;Name=Msa1401390
tig0022515	mRNA	22527	27130	22527	ID=Msa1401390-mRNA-1;Parent=Msa1401390;Name=Msa1401390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=88\|1\|1\|1\|1\|1\|8\|433\|389
tig0022515	exon	22527	23181	22527	ID=Msa1401390-mRNA-1:exon:18318;Parent=Msa1401390-mRNA-1
tig0022515	exon	23966	24034	23966	ID=Msa1401390-mRNA-1:exon:18319;Parent=Msa1401390-mRNA-1
tig0022515	exon	24718	24849	24718	ID=Msa1401390-mRNA-1:exon:18320;Parent=Msa1401390-mRNA-1
tig0022515	exon	24956	25009	24956	ID=Msa1401390-mRNA-1:exon:18321;Parent=Msa1401390-mRNA-1
tig0022515	exon	25105	25149	25105	ID=Msa1401390-mRNA-1:exon:18322;Parent=Msa1401390-mRNA-1
tig0022515	exon	26012	26151	26012	ID=Msa1401390-mRNA-1:exon:18323;Parent=Msa1401390-mRNA-1
tig0022515	exon	26445	26570	26445	ID=Msa1401390-mRNA-1:exon:18324;Parent=Msa1401390-mRNA-1
tig0022515	exon	26661	27130	26661	ID=Msa1401390-mRNA-1:exon:18325;Parent=Msa1401390-mRNA-1
tig0022515	five_prime_UTR	22527	22614	22527	ID=Msa1401390-mRNA-1:five_prime_utr;Parent=Msa1401390-mRNA-1
tig0022515	CDS	22615	23181	22615	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	23966	24034	23966	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	24718	24849	24718	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	24956	25009	24956	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	25105	25149	25105	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	26012	26151	26012	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	26445	26570	26445	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	CDS	26661	26697	26661	ID=Msa1401390-mRNA-1:cds;Parent=Msa1401390-mRNA-1
tig0022515	three_prime_UTR	26698	27130	26698	ID=Msa1401390-mRNA-1:three_prime_utr;Parent=Msa1401390-mRNA-1

Gene Sequence

>Msa1401390

ATGTCGTCGATCGCTTTTTCCTTCGTTCCTCCTTCTTCCCATTCTCTTTCTTCTCATTCTCCTTCCACTCCTAAATCCCTCCCTTCTTTTTCTTTCCCTCCACTTTCCCTCCGTCTCCGTATCACTCCTTCTCCTTCTCCTTCTTTCCGTATCAACCACCGCACAGATCCTCTCTTCATTCTCCATTCCACCGATTCCGCCGTACCTTCTTTCGACGGTGGAGATTCATTCGGAGGACACGGTGGAGATGACGGAAAAAACAATGACGGACATGGACACGGAGGAGACGGAGAAAGCAATGACGGAGGAAAGAGCGGCGGATTGAATGAGGCGTTGTTGTTGTTGGCGCAAGCGGGGAGGTCGTTGGAGAGTGTGCCGGCTGACTTAGCTTCGGCTATCAAGGAAGGTAAGATTCCGGCGTCTGTAGTTGAGAGGTTTTTGGAGCTTGAGAAGTCTCCGTTTATGCGGTGGTTGCTTCAGTTTGGTGGTTTTAAAGAGCGTCTTCTTGCTGATGATCTTTTTCTTGCTAAGGTTGGATTTGAATGCGGCGTCGGCGTTTTCACCAAGACTGCTGCTGAGTATGATCGCCGGAGAGAGAAATTTTTCGATGAGCTGGAAATTGTGTTCGCCGATGTGGTCATGGCTATAATCGCAGATTTCATGCTAGTTTATTTACCTGCACCTACGGTTTCTCTTAGACCACCACTTGGAGTCAGTGCAGGGGCTATTACTAAGTTTTTCCACAACTGCCCAGATAATGCATTCCAGGTTGCTCTCTCTGGATCATCATATTCTTTCTTGCAAAGAGTTGGTGCAATTGTGCGTATTGGGTCCAAGCTTTTTGCAGTTGGATCTGCTTCGTCACTGGTTGGGACAGTTGTGACTAATGCCGCAATTAATGCAAAGAAGGCTGTTAATAAGGATTCTGCAGAGGAAATTGAAAATGTTCCCATATTTTCTACCAGTGCTGCTTATGGTGTTTATATGGCAGTTTCTAGCAACCTCAGGTACCAAGTTCTTTCTGGAATTATTGAACAGAGGCTTTTGGAACCTTTGTTGCACCAGCACAAGCTTGTACTTAGTGCTCTTTGCTTTGCTGTTCGAACCGGCAATACGTATTTGGGTTCATTATTATGGGTGGATTATGCACGTTGGATAGGGGTTCAGTAG

Protein sequence

>Msa1401390

MSSIAFSFVPPSSHSLSSHSPSTPKSLPSFSFPPLSLRLRITPSPSPSFRINHRTDPLFILHSTDSAVPSFDGGDSFGGHGGDDGKNNDGHGHGGDGESNDGGKSGGLNEALLLLAQAGRSLESVPADLASAIKEGKIPASVVERFLELEKSPFMRWLLQFGGFKERLLADDLFLAKVGFECGVGVFTKTAAEYDRRREKFFDELEIVFADVVMAIIADFMLVYLPAPTVSLRPPLGVSAGAITKFFHNCPDNAFQVALSGSSYSFLQRVGAIVRIGSKLFAVGSASSLVGTVVTNAAINAKKAVNKDSAEEIENVPIFSTSAAYGVYMAVSSNLRYQVLSGIIEQRLLEPLLHQHKLVLSALCFAVRTGNTYLGSLLWVDYARWIGVQ*