AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687870 MtrunA17_Chr4g0039291 97.449 392 3 5 1 389 1 388 0.0 748
Msa0687870 MtrunA17_Chr4g0020011 72.954 281 76 0 109 389 97 377 1.31e-153 438
Msa0687870 MtrunA17_Chr3g0090071 64.516 279 97 1 111 389 111 387 5.59e-132 384
Msa0687870 MtrunA17_Chr3g0114241 34.828 290 176 5 110 389 430 716 3.98e-49 177
Msa0687870 MtrunA17_Chr2g0320711 31.502 273 174 5 125 389 168 435 2.43e-34 132
Msa0687870 MtrunA17_Chr7g0240091 31.884 276 171 7 124 389 180 448 1.15e-30 122
Msa0687870 MtrunA17_Chr7g0245291 30.472 233 145 4 159 389 108 325 7.46e-25 103
Msa0687870 MtrunA17_Chr7g0245261 31.633 196 123 3 159 352 101 287 1.85e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687870 AT5G12470.1 76.512 281 66 0 109 389 103 383 2.42e-164 466
Msa0687870 AT3G56140.2 35.211 284 175 4 114 389 207 489 4.17e-53 184
Msa0687870 AT3G56140.1 35.714 280 171 4 118 389 430 708 8.73e-52 184
Msa0687870 AT3G56140.3 35.714 280 171 4 118 389 430 708 8.73e-52 184
Msa0687870 AT2G40400.2 34.375 288 180 4 110 389 413 699 1.77e-51 183
Msa0687870 AT2G40400.1 34.375 288 180 4 110 389 413 699 1.77e-51 183
Msa0687870 AT2G40400.3 34.034 238 149 3 110 339 413 650 2.14e-38 146
Msa0687870 AT5G22790.1 30.035 283 188 5 114 389 154 433 4.54e-32 125
Msa0687870 AT2G37860.3 29.964 277 175 7 124 389 164 432 2.79e-29 118
Msa0687870 AT2G37860.4 29.964 277 175 7 124 389 164 432 2.79e-29 118
Msa0687870 AT3G08640.1 29.752 242 155 5 150 389 94 322 9.17e-22 95.5
Msa0687870 AT3G08630.1 28.879 232 144 5 163 389 104 319 2.96e-21 94.4
Msa0687870 AT2G37860.2 26.984 189 124 4 124 303 164 347 8.79e-13 69.3
Msa0687870 AT2G37860.1 26.984 189 124 4 124 303 164 347 8.79e-13 69.3

Find 127 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAACCGGCAATACGTATT+TGG 0.115303 4_4:-52851245 Msa0687870:CDS
GATAGGTACCAAGTTCTTTC+TGG 0.185122 4_4:-52851343 Msa0687870:intron
CTTCCACAGGTTGCTCTCTC+TGG 0.204802 4_4:-52852830 Msa0687870:intron
CCAAGTCATTATCTTTGTTT+TGG 0.213638 4_4:+52851083 None:intergenic
AGCAGCACTGGTAGAAAATA+TGG 0.239676 4_4:+52851683 None:intergenic
AAGGAATGGGGATGGGTTTC+AGG 0.239677 4_4:+52850733 None:intergenic
TGCAAAGAAGGCTGTTAATA+AGG 0.245873 4_4:-52851733 Msa0687870:CDS
AAGACCTGGAATGCATTATC+TGG 0.259642 4_4:+52852945 None:intergenic
AATTATTGAACAGAGGCTTT+TGG 0.323263 4_4:-52851320 Msa0687870:CDS
CGAACCGGCAATACGTATTT+GGG 0.327044 4_4:-52851244 Msa0687870:CDS
TGGATTATGCACGTTGGATA+GGG 0.345466 4_4:-52851117 Msa0687870:CDS
TTGTTGTTGTTGGCGCAAGC+GGG 0.349863 4_4:-52854805 Msa0687870:CDS
CTGCCCAGATAATGCATTCC+AGG 0.359487 4_4:-52852949 Msa0687870:intron
GTTACCTTGCACAGCGTAAT+GGG 0.387864 4_4:-52852686 Msa0687870:intron
TGCTGCTTATGGTGTTTATA+TGG 0.391910 4_4:-52851667 Msa0687870:CDS
CTTTGCTTTGCTGTTCGAAC+CGG 0.402782 4_4:-52851259 Msa0687870:CDS
GAGAATGAGAAGAAAGAGAA+TGG 0.416969 4_4:+52855100 None:intergenic
TGAAGCAACCACCGCATAAA+CGG 0.426527 4_4:+52854682 None:intergenic
CAATAATTCCAGAAAGAACT+TGG 0.431709 4_4:+52851335 None:intergenic
CTCATGCTAGAGCAAGGAAT+GGG 0.436391 4_4:+52850720 None:intergenic
TGAACCCAAATACGTATTGC+CGG 0.437016 4_4:+52851240 None:intergenic
GACATCAGAGAACAAATTAA+CGG 0.447455 4_4:-52851007 Msa0687870:three_prime_UTR
GAATGAGGCGTTGTTGTTGT+TGG 0.453993 4_4:-52854815 Msa0687870:CDS
GTGGATTATGCACGTTGGAT+AGG 0.462939 4_4:-52851118 Msa0687870:CDS
GGTTACCTTGCACAGCGTAA+TGG 0.466762 4_4:-52852687 Msa0687870:intron
GAAAGAAGGTACGGCGGAAT+CGG 0.471592 4_4:+52854948 None:intergenic
CCACCACTTGGAGTCAGTGC+AGG 0.480173 4_4:-52852996 Msa0687870:CDS
CTTGCTCTAGCATGAGATGC+AGG 0.481016 4_4:-52850713 Msa0687870:three_prime_UTR
TGACTTAGCTTCGGCTATCA+AGG 0.481342 4_4:-52854758 Msa0687870:CDS
AGTTGGATCTGCTTCGTCAC+TGG 0.485700 4_4:-52852649 Msa0687870:intron
TATCAAGGAAGGTAAGATTC+CGG 0.485810 4_4:-52854743 Msa0687870:CDS
TATTCTTTCTTGCAAAGAGT+TGG 0.485972 4_4:-52852800 Msa0687870:CDS
GTTGTTGTTGTTGGCGCAAG+CGG 0.486703 4_4:-52854806 Msa0687870:CDS
GAATCTCCGCCGTCGAAAGA+AGG 0.486782 4_4:+52854934 None:intergenic
GAAGAAAGAGAATGGGAAGA+AGG 0.488748 4_4:+52855108 None:intergenic
GGGAGGGATTTAGGAGTGGA+AGG 0.490063 4_4:+52855078 None:intergenic
AGAATGAGAAGAAAGAGAAT+GGG 0.491291 4_4:+52855101 None:intergenic
TTCGACGGCGGAGATTCATT+CGG 0.491604 4_4:-52854928 Msa0687870:CDS
AAGCTGCGCACGACTCACTC+AGG 0.491715 4_4:+52855184 None:intergenic
ATGCGGTGGTTGCTTCAGTT+TGG 0.491847 4_4:-52854676 Msa0687870:CDS
CGGTGGTTGCTTCAGTTTGG+TGG 0.501146 4_4:-52854673 Msa0687870:CDS
GATCTGTGCGGTGGTTGATA+CGG 0.503940 4_4:+52854992 None:intergenic
GAGAAGGAGAAGGAGTGATA+CGG 0.506494 4_4:+52855022 None:intergenic
TGCCGCAATTAATGCAAAGA+AGG 0.515316 4_4:-52851745 Msa0687870:CDS
GCAGCACTGGTAGAAAATAT+GGG 0.517884 4_4:+52851684 None:intergenic
GGCGCAAGCGGGGAGGTCGT+TGG 0.524312 4_4:-52854794 Msa0687870:CDS
ATACGGAGACGGAGGGAAAG+TGG 0.524321 4_4:+52855039 None:intergenic
CGGAAAGAAGGAGAAGGAGA+AGG 0.527272 4_4:+52855012 None:intergenic
AGTTTATTTACCTGCACCTA+CGG 0.529483 4_4:-52853030 Msa0687870:CDS
GAAAGAGAATGGGAAGAAGG+AGG 0.529887 4_4:+52855111 None:intergenic
CTAAGAGAAACCGTAGGTGC+AGG 0.531784 4_4:+52853020 None:intergenic
TCCGCCGTACCTTCTTTCGA+CGG 0.532915 4_4:-52854943 Msa0687870:CDS
ATGGGAAGAAGGAGGAACGA+AGG 0.532917 4_4:+52855119 None:intergenic
AGAAGGTACGGCGGAATCGG+TGG 0.534117 4_4:+52854951 None:intergenic
CTCGTAACATCAATTGAATG+AGG 0.540384 4_4:+52850894 None:intergenic
GTTGGATTTGAATGCGGCGT+CGG 0.540654 4_4:-52854607 Msa0687870:CDS
TCTCTGATGTCAAGTAATGA+AGG 0.541604 4_4:+52851019 None:intergenic
CTCATTCAATTGATGTTACG+AGG 0.541710 4_4:-52850893 Msa0687870:three_prime_UTR
CACCACTTGGAGTCAGTGCA+GGG 0.544286 4_4:-52852995 Msa0687870:CDS
AGCTGCGCACGACTCACTCA+GGG 0.545132 4_4:+52855185 None:intergenic
CACTAAGTACAAGCTTGTGC+TGG 0.546248 4_4:+52851284 None:intergenic
GTACGGCGGAATCGGTGGAA+TGG 0.550207 4_4:+52854956 None:intergenic
AGAAGGGAGGGATTTAGGAG+TGG 0.561658 4_4:+52855074 None:intergenic
TGGCAGTTTCTAGCAACCTC+AGG 0.563504 4_4:-52851647 Msa0687870:intron
AAAGAGCGGCGGATTGAATG+AGG 0.564436 4_4:-52854830 Msa0687870:CDS
AGCCTTCTTTGCATTAATTG+CGG 0.566973 4_4:+52851743 None:intergenic
CGGTGGTTGATACGGAAAGA+AGG 0.568152 4_4:+52855000 None:intergenic
AGCTTGTGCTGGTGCAACAA+AGG 0.568917 4_4:+52851295 None:intergenic
ATAAACACCATAAGCAGCAC+TGG 0.569201 4_4:+52851671 None:intergenic
GTTTCTCTTAGACCACCACT+TGG 0.569402 4_4:-52853008 Msa0687870:CDS
AGACCTGGAATGCATTATCT+GGG 0.570627 4_4:+52852946 None:intergenic
GGAGGACACGGTGGAGATGA+CGG 0.571833 4_4:-52854907 Msa0687870:CDS
GAGGTCGTTGGAGAGTGTGC+CGG 0.573713 4_4:-52854782 Msa0687870:CDS
CCAAAACAAAGATAATGACT+TGG 0.576568 4_4:-52851083 Msa0687870:three_prime_UTR
GGACATGGACACGGAGGAGA+CGG 0.576585 4_4:-52854871 Msa0687870:CDS
TTCCGGCGTCTGTAGTTGAG+AGG 0.579757 4_4:-52854726 Msa0687870:CDS
TGTTGTTGGCGCAAGCGGGG+AGG 0.580429 4_4:-52854801 Msa0687870:CDS
GGATTATGCACGTTGGATAG+GGG 0.580434 4_4:-52851116 Msa0687870:CDS
TGTTGTTGTTGGCGCAAGCG+GGG 0.580768 4_4:-52854804 Msa0687870:CDS
ATAAGAATAAGCAGAGTGCT+CGG 0.580986 4_4:+52850932 None:intergenic
AGCTTCGTAAGTGAGTGAAA+AGG 0.583647 4_4:-52855166 Msa0687870:five_prime_UTR
GAGAAGGAGTGATACGGAGA+CGG 0.585406 4_4:+52855028 None:intergenic
TGTGCCGGCTGACTTAGCTT+CGG 0.587224 4_4:-52854767 Msa0687870:CDS
TCTCATGCTAGAGCAAGGAA+TGG 0.588577 4_4:+52850719 None:intergenic
GCAAAGAGTTGGTGCAATTG+TGG 0.590276 4_4:-52852789 Msa0687870:intron
ATAGCCGAAGCTAAGTCAGC+CGG 0.591802 4_4:+52854763 None:intergenic
CCTGCACTGACTCCAAGTGG+TGG 0.593747 4_4:+52852996 None:intergenic
TTTCTGGAATTATTGAACAG+AGG 0.594616 4_4:-52851327 Msa0687870:CDS
GCTAAGGTTGGATTTGAATG+CGG 0.594787 4_4:-52854613 Msa0687870:CDS
AGAAGTCTCCGTTTATGCGG+TGG 0.595528 4_4:-52854690 Msa0687870:CDS
TCCGCCGTCGAAAGAAGGTA+CGG 0.595611 4_4:+52854939 None:intergenic
CTAGAGCAAGGAATGGGGAT+GGG 0.595641 4_4:+52850726 None:intergenic
GCTAGAGCAAGGAATGGGGA+TGG 0.596037 4_4:+52850725 None:intergenic
AACAATGACGGACATGGACA+CGG 0.598016 4_4:-52854880 Msa0687870:CDS
CGGAGACGGAGGGAAAGTGG+AGG 0.602640 4_4:+52855042 None:intergenic
AGCAATGACGGAGGAAAGAG+CGG 0.605733 4_4:-52854844 Msa0687870:CDS
GGAGACGGAGAAAGCAATGA+CGG 0.605922 4_4:-52854856 Msa0687870:CDS
TTGAGAAGTCTCCGTTTATG+CGG 0.611377 4_4:-52854693 Msa0687870:CDS
GGAGACGGAGGGAAAGTGGA+GGG 0.611726 4_4:+52855043 None:intergenic
ATGCATTATCTGGGCAGTTG+TGG 0.612230 4_4:+52852955 None:intergenic
TTGATACGGAAAGAAGGAGA+AGG 0.613206 4_4:+52855006 None:intergenic
GACGGCGGAGATTCATTCGG+AGG 0.615425 4_4:-52854925 Msa0687870:CDS
GGAGATTCATTCGGAGGACA+CGG 0.619025 4_4:-52854919 Msa0687870:CDS
GGAAATTGTGTTCGCCGATG+TGG 0.619314 4_4:-52853764 Msa0687870:intron
CTGCATCTCATGCTAGAGCA+AGG 0.621611 4_4:+52850714 None:intergenic
AAGGAGTGATACGGAGACGG+AGG 0.622593 4_4:+52855031 None:intergenic
TTAGCTTCGGCTATCAAGGA+AGG 0.626770 4_4:-52854754 Msa0687870:CDS
GCCCCTGCACTGACTCCAAG+TGG 0.636274 4_4:+52852993 None:intergenic
AACCTCTCAACTACAGACGC+CGG 0.638287 4_4:+52854724 None:intergenic
AGGAGTGATACGGAGACGGA+GGG 0.638317 4_4:+52855032 None:intergenic
CTGCTGCTGAGTATGATCGC+CGG 0.647821 4_4:-52853810 Msa0687870:CDS
TGTTAATAAGGATTCTGCAG+AGG 0.649189 4_4:-52851721 Msa0687870:CDS
GCCGTACCTTCTTTCGACGG+CGG 0.649661 4_4:-52854940 Msa0687870:CDS
GTGGAATGGAGAATGAAGAG+AGG 0.659755 4_4:+52854970 None:intergenic
TGAGAATATTCATACCACAT+CGG 0.668109 4_4:+52853750 None:intergenic
GACGGAGAAAGCAATGACGG+AGG 0.670438 4_4:-52854853 Msa0687870:CDS
GATGGGTGGATTATGCACGT+TGG 0.670645 4_4:-52851123 Msa0687870:CDS
TCATGCTAGAGCAAGGAATG+GGG 0.677655 4_4:+52850721 None:intergenic
ACCACTTGGAGTCAGTGCAG+GGG 0.698840 4_4:-52852994 Msa0687870:CDS
GCTGCGCACGACTCACTCAG+GGG 0.713352 4_4:+52855186 None:intergenic
GATTCATTCGGAGGACACGG+TGG 0.718521 4_4:-52854916 Msa0687870:CDS
AATGACGGAGGAAAGAGCGG+CGG 0.719319 4_4:-52854841 Msa0687870:CDS
AATGACGGACATGGACACGG+AGG 0.724089 4_4:-52854877 Msa0687870:CDS
TGAAGAGAGGATCTGTGCGG+TGG 0.732308 4_4:+52854983 None:intergenic
GCCGTCGAAAGAAGGTACGG+CGG 0.734361 4_4:+52854942 None:intergenic
GGTGGTCTAAGAGAAACCGT+AGG 0.739590 4_4:+52853014 None:intergenic
GAATGAAGAGAGGATCTGTG+CGG 0.828823 4_4:+52854980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTAATTTAGTTTCTA+TGG - chr4_4:52851349-52851368 Msa0687870:intron 10.0%
!! ATATAATGATATAAATGAAT+TGG - chr4_4:52852504-52852523 Msa0687870:intron 10.0%
!!! ATAAAAAAAAACATTTTCTT+TGG - chr4_4:52852551-52852570 Msa0687870:intron 10.0%
!!! ATATATACTTTTTTTATCTT+TGG - chr4_4:52855031-52855050 Msa0687870:CDS 10.0%
!!! TATATACTTTTTTTATCTTT+GGG - chr4_4:52855032-52855051 Msa0687870:CDS 10.0%
!!! ATGTTTTTTAATTTGAATTG+AGG - chr4_4:52851461-52851480 Msa0687870:intron 15.0%
!!! TGTTTTTTAATTTGAATTGA+GGG - chr4_4:52851462-52851481 Msa0687870:intron 15.0%
!!! TTATTTTTAATGTTTCTAGT+AGG - chr4_4:52853638-52853657 Msa0687870:intron 15.0%
!! AATATATGATATAGATACTT+TGG + chr4_4:52853991-52854010 None:intergenic 15.0%
!! AGAGATAAAAAAAAACTATT+GGG + chr4_4:52854915-52854934 None:intergenic 15.0%
!! TAGAGATAAAAAAAAACTAT+TGG + chr4_4:52854916-52854935 None:intergenic 15.0%
!! CTGAATTAATTTAGTTGTAA+TGG - chr4_4:52851409-52851428 Msa0687870:intron 20.0%
!!! TTTAGTTATATTGAGTGTTT+TGG - chr4_4:52851897-52851916 Msa0687870:intron 20.0%
!!! AAAACATTTTCTTTGGTATT+AGG - chr4_4:52852558-52852577 Msa0687870:intron 20.0%
!! ACTAATTGTTATACAAAATG+TGG - chr4_4:52853183-52853202 Msa0687870:intron 20.0%
!!! ATCATATACCCATAATTTTA+AGG + chr4_4:52853572-52853591 None:intergenic 20.0%
!!! AAGAGTTATTTTTCTATTCA+TGG - chr4_4:52853690-52853709 Msa0687870:intron 20.0%
!! ATATGAAATCATTTATCTAC+TGG - chr4_4:52853929-52853948 Msa0687870:intron 20.0%
!!! AAATCTTTTATTGAACGAAA+AGG + chr4_4:52854018-52854037 None:intergenic 20.0%
!!! TTCATTGTTTTAAATGTAAG+TGG - chr4_4:52854056-52854075 Msa0687870:intron 20.0%
!!! CTCAAACATTTTTAATATGA+TGG + chr4_4:52854477-52854496 None:intergenic 20.0%
!!! GGATTCATTGTTTTAAATTG+CGG - chr4_4:52851483-52851502 Msa0687870:intron 25.0%
! AGTTTGAATATGGTTATTGT+TGG - chr4_4:52851866-52851885 Msa0687870:intron 25.0%
! GTTTGAATATGGTTATTGTT+GGG - chr4_4:52851867-52851886 Msa0687870:intron 25.0%
!! TTATATGTTGATTGACAATC+TGG - chr4_4:52852030-52852049 Msa0687870:intron 25.0%
!! TATATGTTGATTGACAATCT+GGG - chr4_4:52852031-52852050 Msa0687870:intron 25.0%
! AAACATGTCAAAAATAGTCT+GGG + chr4_4:52852323-52852342 None:intergenic 25.0%
!! ATGAAAAACACTCTTTTGTT+TGG - chr4_4:52852616-52852635 Msa0687870:intron 25.0%
!!! TGAAAAACACTCTTTTGTTT+GGG - chr4_4:52852617-52852636 Msa0687870:intron 25.0%
! GTTAACAGACATATGTATTA+AGG + chr4_4:52852714-52852733 None:intergenic 25.0%
!!! AAACAATTTTGACAACCTAA+TGG - chr4_4:52853010-52853029 Msa0687870:CDS 25.0%
! CAATTGTGGTATGTATAATT+TGG - chr4_4:52853116-52853135 Msa0687870:intron 25.0%
! TCTCATTTACCTTTAAATCA+TGG - chr4_4:52853447-52853466 Msa0687870:intron 25.0%
! GAATTTAAACACTATAAGTC+CGG + chr4_4:52853485-52853504 None:intergenic 25.0%
! TCCTGTTAACCTTAAAATTA+TGG - chr4_4:52853560-52853579 Msa0687870:intron 25.0%
! CCTGTTAACCTTAAAATTAT+GGG - chr4_4:52853561-52853580 Msa0687870:intron 25.0%
! ATATGATATAGATACTTTGG+CGG + chr4_4:52853988-52854007 None:intergenic 25.0%
!! AGCATTAGTAGATTTTAGAT+TGG + chr4_4:52854312-52854331 None:intergenic 25.0%
!! TCTAAAATCTACTAATGCTT+CGG - chr4_4:52854313-52854332 Msa0687870:intron 25.0%
! TCATAAAACATGAGTTATAC+TGG + chr4_4:52854735-52854754 None:intergenic 25.0%
!!! CAAGTCATTATCTTTGTTTT+GGG + chr4_4:52854810-52854829 None:intergenic 25.0%
!!! TTTTTTTATCTTTGGGTACA+AGG - chr4_4:52855039-52855058 Msa0687870:CDS 25.0%
AGAATGAGAAGAAAGAGAAT+GGG + chr4_4:52850793-52850812 None:intergenic 30.0%
! TGATGATCTTTTTCTTGCTA+AGG - chr4_4:52851262-52851281 Msa0687870:CDS 30.0%
ATAGTGTAAGAATGAAACCT+TGG + chr4_4:52851318-52851337 None:intergenic 30.0%
AATGGAATTAAAGCTTGACA+AGG - chr4_4:52851427-52851446 Msa0687870:intron 30.0%
!!! ATTGTTTTAAATTGCGGTTG+CGG - chr4_4:52851489-52851508 Msa0687870:intron 30.0%
ATATGAAGCAGATTGAGATT+TGG - chr4_4:52851671-52851690 Msa0687870:CDS 30.0%
TATGAAGCAGATTGAGATTT+GGG - chr4_4:52851672-52851691 Msa0687870:CDS 30.0%
GGGATTGAATAGTTTGAATA+TGG - chr4_4:52851856-52851875 Msa0687870:intron 30.0%
GAGTTGTATGATTATTGAGT+AGG - chr4_4:52851935-52851954 Msa0687870:intron 30.0%
TGATTATTGAGTAGGAAGAT+TGG - chr4_4:52851943-52851962 Msa0687870:intron 30.0%
GATTATTGAGTAGGAAGATT+GGG - chr4_4:52851944-52851963 Msa0687870:intron 30.0%
TGAGAATATTCATACCACAT+CGG + chr4_4:52852144-52852163 None:intergenic 30.0%
GTAGTAACTATAACTAAGCA+AGG + chr4_4:52852196-52852215 None:intergenic 30.0%
TACTACATGTTGTCTTATGA+CGG - chr4_4:52852210-52852229 Msa0687870:intron 30.0%
CAAAGATGAAAATGCTAACA+AGG + chr4_4:52852299-52852318 None:intergenic 30.0%
AACATGTCAAAAATAGTCTG+GGG + chr4_4:52852322-52852341 None:intergenic 30.0%
GAAACATGTCAAAAATAGTC+TGG + chr4_4:52852324-52852343 None:intergenic 30.0%
TTGACTAGAACTTGAGATAT+CGG - chr4_4:52852373-52852392 Msa0687870:intron 30.0%
!!! TTTTTTTCTTCGATTTCCTC+TGG - chr4_4:52852405-52852424 Msa0687870:intron 30.0%
!!! GGAGAAATTGACAGTTTTTT+TGG - chr4_4:52852525-52852544 Msa0687870:intron 30.0%
!! ATAGTAGCATCAGAAGTATT+TGG + chr4_4:52852585-52852604 None:intergenic 30.0%
AAGAATACTACATTTCTCTG+TGG - chr4_4:52852642-52852661 Msa0687870:intron 30.0%
ACCATGTGAAAGTAAGATAT+GGG + chr4_4:52852979-52852998 None:intergenic 30.0%
AACCATGTGAAAGTAAGATA+TGG + chr4_4:52852980-52852999 None:intergenic 30.0%
CGTAAGTAAATACTACCATT+AGG + chr4_4:52853028-52853047 None:intergenic 30.0%
TATTCTTTCTTGCAAAGAGT+TGG - chr4_4:52853091-52853110 Msa0687870:intron 30.0%
AGTTCTCATTTGCCTAATTA+TGG - chr4_4:52853267-52853286 Msa0687870:intron 30.0%
TTACCTTTAAATCATGGCTT+TGG - chr4_4:52853453-52853472 Msa0687870:intron 30.0%
!!! CCCATAATTTTAAGGTTAAC+AGG + chr4_4:52853564-52853583 None:intergenic 30.0%
GTATTGTTGAAATTCTAGCA+TGG - chr4_4:52853608-52853627 Msa0687870:intron 30.0%
ATGGTTAAGTTTAATTCAGC+TGG - chr4_4:52853756-52853775 Msa0687870:intron 30.0%
TGGTTAAGTTTAATTCAGCT+GGG - chr4_4:52853757-52853776 Msa0687870:intron 30.0%
CAATGAATGCAAATAACACT+CGG + chr4_4:52854043-52854062 None:intergenic 30.0%
AAATGTAAGTGGAATCAACT+AGG - chr4_4:52854067-52854086 Msa0687870:intron 30.0%
! TTTGCATTTTGCTTTCATTC+AGG - chr4_4:52854104-52854123 Msa0687870:intron 30.0%
!! ATTTTGCTTTCATTCAGGTT+GGG - chr4_4:52854109-52854128 Msa0687870:intron 30.0%
! CACATTATTCTTTTTACCTG+AGG + chr4_4:52854263-52854282 None:intergenic 30.0%
!!! ACCATTAGTGAGATTTTTTG+AGG - chr4_4:52854286-52854305 Msa0687870:intron 30.0%
! ATCTTTTATCACATCATGCA+TGG - chr4_4:52854436-52854455 Msa0687870:intron 30.0%
! AAAAATCTGATTTGCCTGAT+AGG - chr4_4:52854531-52854550 Msa0687870:intron 30.0%
CAATAATTCCAGAAAGAACT+TGG + chr4_4:52854559-52854578 None:intergenic 30.0%
!! TTTCTGGAATTATTGAACAG+AGG - chr4_4:52854564-52854583 Msa0687870:intron 30.0%
! AATTATTGAACAGAGGCTTT+TGG - chr4_4:52854571-52854590 Msa0687870:intron 30.0%
! TATGATTTTGCCTTTACAGA+TGG - chr4_4:52854750-52854769 Msa0687870:CDS 30.0%
! ATGATTTTGCCTTTACAGAT+GGG - chr4_4:52854751-52854770 Msa0687870:CDS 30.0%
!! CCAAGTCATTATCTTTGTTT+TGG + chr4_4:52854811-52854830 None:intergenic 30.0%
CCAAAACAAAGATAATGACT+TGG - chr4_4:52854808-52854827 Msa0687870:CDS 30.0%
GACATCAGAGAACAAATTAA+CGG - chr4_4:52854884-52854903 Msa0687870:CDS 30.0%
!!! AGAAGCAAGTTTTTTCTTGA+TGG - chr4_4:52855112-52855131 Msa0687870:CDS 30.0%
GAGAATGAGAAGAAAGAGAA+TGG + chr4_4:52850794-52850813 None:intergenic 35.0%
!! GATGACGGAAAAAACAATGA+CGG - chr4_4:52850999-52851018 Msa0687870:three_prime_UTR 35.0%
TATCAAGGAAGGTAAGATTC+CGG - chr4_4:52851148-52851167 Msa0687870:intron 35.0%
! GATCTTTTTCTTGCTAAGGT+TGG - chr4_4:52851266-52851285 Msa0687870:CDS 35.0%
ATGAAGCAGATTGAGATTTG+GGG - chr4_4:52851673-52851692 Msa0687870:CDS 35.0%
CATCGAAAAATTTCTCTCTC+CGG + chr4_4:52852103-52852122 None:intergenic 35.0%
!! AGAGAAATTTTTCGATGAGC+TGG - chr4_4:52852106-52852125 Msa0687870:intron 35.0%
AACTAAGCAAGGAAATTCAC+AGG + chr4_4:52852185-52852204 None:intergenic 35.0%
!! GTATTTGTTGTCACTTCTTC+TGG - chr4_4:52852437-52852456 Msa0687870:intron 35.0%
AAACGATAGCATGTACAAAG+TGG + chr4_4:52852739-52852758 None:intergenic 35.0%
GACTACAATACATGTTTCAC+AGG + chr4_4:52852778-52852797 None:intergenic 35.0%
CAATGCAATAGGGATGTTAT+GGG + chr4_4:52852805-52852824 None:intergenic 35.0%
ACAATGCAATAGGGATGTTA+TGG + chr4_4:52852806-52852825 None:intergenic 35.0%
AGTTTATTTACCTGCACCTA+CGG - chr4_4:52852861-52852880 Msa0687870:intron 35.0%
ATATGGGATATATCAAGACC+TGG + chr4_4:52852963-52852982 None:intergenic 35.0%
TCCCATATCTTACTTTCACA+TGG - chr4_4:52852975-52852994 Msa0687870:CDS 35.0%
CATTCTTAATTTCCTTCCAC+AGG - chr4_4:52853048-52853067 Msa0687870:CDS 35.0%
CCACAGGAAACTAAAAAGAA+AGG + chr4_4:52853157-52853176 None:intergenic 35.0%
!!! CCTTTCTTTTTAGTTTCCTG+TGG - chr4_4:52853154-52853173 Msa0687870:intron 35.0%
!! AGCACAAGAGTACCATAATT+AGG + chr4_4:52853282-52853301 None:intergenic 35.0%
ATAAGAGTAATGTGAAGAGC+AGG + chr4_4:52853347-52853366 None:intergenic 35.0%
CATTACTCTTATGAGCACTT+TGG - chr4_4:52853355-52853374 Msa0687870:intron 35.0%
!! ACTCTGCTTAACTTGTGTTT+CGG + chr4_4:52853393-52853412 None:intergenic 35.0%
GAACCAAAGCCATGATTTAA+AGG + chr4_4:52853459-52853478 None:intergenic 35.0%
CGTCTCAAGATTTGTATTGT+TGG + chr4_4:52853507-52853526 None:intergenic 35.0%
!! CTCTCTACAAGTTTGTTGTA+TGG - chr4_4:52853737-52853756 Msa0687870:intron 35.0%
TTAAGTTTAATTCAGCTGGG+TGG - chr4_4:52853760-52853779 Msa0687870:intron 35.0%
TAAGTTTAATTCAGCTGGGT+GGG - chr4_4:52853761-52853780 Msa0687870:intron 35.0%
AAAGCCTAAATCTTGGTCAT+TGG - chr4_4:52853817-52853836 Msa0687870:intron 35.0%
TCTGAAGAACAAGATAGTGA+AGG - chr4_4:52853953-52853972 Msa0687870:intron 35.0%
CTGAAGAACAAGATAGTGAA+GGG - chr4_4:52853954-52853973 Msa0687870:intron 35.0%
! CATTTTGCTTTCATTCAGGT+TGG - chr4_4:52854108-52854127 Msa0687870:intron 35.0%
AGCCTTCTTTGCATTAATTG+CGG + chr4_4:52854151-52854170 None:intergenic 35.0%
TGCAAAGAAGGCTGTTAATA+AGG - chr4_4:52854158-52854177 Msa0687870:intron 35.0%
TGTTAATAAGGATTCTGCAG+AGG - chr4_4:52854170-52854189 Msa0687870:intron 35.0%
! TGCTGCTTATGGTGTTTATA+TGG - chr4_4:52854224-52854243 Msa0687870:intron 35.0%
GCCTCAAAAAATCTCACTAA+TGG + chr4_4:52854290-52854309 None:intergenic 35.0%
TCTCTGATGTCAAGTAATGA+AGG + chr4_4:52854875-52854894 None:intergenic 35.0%
! ATAAGAATAAGCAGAGTGCT+CGG + chr4_4:52854962-52854981 None:intergenic 35.0%
CTCGTAACATCAATTGAATG+AGG + chr4_4:52855000-52855019 None:intergenic 35.0%
CTCATTCAATTGATGTTACG+AGG - chr4_4:52854998-52855017 Msa0687870:CDS 35.0%
AGCTTCGTAAGTGAGTGAAA+AGG - chr4_4:52850725-52850744 Msa0687870:three_prime_UTR 40.0%
GAAGAAAGAGAATGGGAAGA+AGG + chr4_4:52850786-52850805 None:intergenic 40.0%
GAAAAAGAAGGGAGGGATTT+AGG + chr4_4:52850825-52850844 None:intergenic 40.0%
AGGGAAAGAAAAAGAAGGGA+GGG + chr4_4:52850832-52850851 None:intergenic 40.0%
GTGGAGGGAAAGAAAAAGAA+GGG + chr4_4:52850836-52850855 None:intergenic 40.0%
AGTGGAGGGAAAGAAAAAGA+AGG + chr4_4:52850837-52850856 None:intergenic 40.0%
TTGATACGGAAAGAAGGAGA+AGG + chr4_4:52850888-52850907 None:intergenic 40.0%
!! GGAAAAAACAATGACGGACA+TGG - chr4_4:52851005-52851024 Msa0687870:three_prime_UTR 40.0%
! GTCTGTAGTTGAGAGGTTTT+TGG - chr4_4:52851172-52851191 Msa0687870:intron 40.0%
TTGAGAAGTCTCCGTTTATG+CGG - chr4_4:52851198-52851217 Msa0687870:intron 40.0%
GCTAAGGTTGGATTTGAATG+CGG - chr4_4:52851278-52851297 Msa0687870:CDS 40.0%
AAACTAAGACTCTGCTATGG+TGG + chr4_4:52851600-52851619 None:intergenic 40.0%
AGCAAACTAAGACTCTGCTA+TGG + chr4_4:52851603-52851622 None:intergenic 40.0%
CTACTGCATCAGCAATATTG+TGG - chr4_4:52851813-52851832 Msa0687870:intron 40.0%
CAAACTATTCAATCCCTCCA+TGG + chr4_4:52851852-52851871 None:intergenic 40.0%
CAAATACGACATACAACCAG+AGG + chr4_4:52852424-52852443 None:intergenic 40.0%
ATCCCTATTGCATTGTTCTC+AGG - chr4_4:52852810-52852829 Msa0687870:CDS 40.0%
GACCTGAGAACAATGCAATA+GGG + chr4_4:52852815-52852834 None:intergenic 40.0%
TGACCTGAGAACAATGCAAT+AGG + chr4_4:52852816-52852835 None:intergenic 40.0%
ATTGCATTGTTCTCAGGTCA+TGG - chr4_4:52852816-52852835 Msa0687870:CDS 40.0%
AGACCTGGAATGCATTATCT+GGG + chr4_4:52852948-52852967 None:intergenic 40.0%
AAGACCTGGAATGCATTATC+TGG + chr4_4:52852949-52852968 None:intergenic 40.0%
AACAATTAGTCACTAGCCAC+AGG + chr4_4:52853173-52853192 None:intergenic 40.0%
AGATCCAACTGCAAAAAGCT+TGG + chr4_4:52853232-52853251 None:intergenic 40.0%
TATGGTACTCTTGTGCTTTG+TGG - chr4_4:52853285-52853304 Msa0687870:intron 40.0%
! CAGAGTCATGATTTTGCAGT+GGG - chr4_4:52853407-52853426 Msa0687870:intron 40.0%
! AGAGTCATGATTTTGCAGTG+GGG - chr4_4:52853408-52853427 Msa0687870:intron 40.0%
AGTAGGCTGTTTGAATGCTA+TGG - chr4_4:52853655-52853674 Msa0687870:intron 40.0%
GTAGGCTGTTTGAATGCTAT+GGG - chr4_4:52853656-52853675 Msa0687870:intron 40.0%
CAAGCCAATGACCAAGATTT+AGG + chr4_4:52853824-52853843 None:intergenic 40.0%
TGCCGCAATTAATGCAAAGA+AGG - chr4_4:52854146-52854165 Msa0687870:intron 40.0%
!! GCAGCACTGGTAGAAAATAT+GGG + chr4_4:52854210-52854229 None:intergenic 40.0%
!! AGCAGCACTGGTAGAAAATA+TGG + chr4_4:52854211-52854230 None:intergenic 40.0%
!!! TTTTCTACCAGTGCTGCTTA+TGG - chr4_4:52854213-52854232 Msa0687870:intron 40.0%
ATAAACACCATAAGCAGCAC+TGG + chr4_4:52854223-52854242 None:intergenic 40.0%
ATGCTTCGGTCAACTAATGT+TGG - chr4_4:52854327-52854346 Msa0687870:intron 40.0%
GAAAGAACTTGGTACCTATC+AGG + chr4_4:52854548-52854567 None:intergenic 40.0%
GATAGGTACCAAGTTCTTTC+TGG - chr4_4:52854548-52854567 Msa0687870:intron 40.0%
TGAACCCAAATACGTATTGC+CGG + chr4_4:52854654-52854673 None:intergenic 40.0%
! ATTTTGCCTTTACAGATGGG+TGG - chr4_4:52854754-52854773 Msa0687870:CDS 40.0%
CATAATCCACCCATCTGTAA+AGG + chr4_4:52854763-52854782 None:intergenic 40.0%
TGGATTATGCACGTTGGATA+GGG - chr4_4:52854774-52854793 Msa0687870:CDS 40.0%
GAAAGAGAATGGGAAGAAGG+AGG + chr4_4:52850783-52850802 None:intergenic 45.0%
GAGGGAAAGAAAAAGAAGGG+AGG + chr4_4:52850833-52850852 None:intergenic 45.0%
GAGAAGGAGAAGGAGTGATA+CGG + chr4_4:52850872-52850891 None:intergenic 45.0%
GAATGAAGAGAGGATCTGTG+CGG + chr4_4:52850914-52850933 None:intergenic 45.0%
GTGGAATGGAGAATGAAGAG+AGG + chr4_4:52850924-52850943 None:intergenic 45.0%
!! AACAATGACGGACATGGACA+CGG - chr4_4:52851011-52851030 Msa0687870:three_prime_UTR 45.0%
!! GAATGAGGCGTTGTTGTTGT+TGG - chr4_4:52851076-52851095 Msa0687870:three_prime_UTR 45.0%
TGACTTAGCTTCGGCTATCA+AGG - chr4_4:52851133-52851152 Msa0687870:intron 45.0%
TTAGCTTCGGCTATCAAGGA+AGG - chr4_4:52851137-52851156 Msa0687870:intron 45.0%
TGAAGCAACCACCGCATAAA+CGG + chr4_4:52851212-52851231 None:intergenic 45.0%
GTCTATTGCGTTTCCTGATG+TGG - chr4_4:52851747-52851766 Msa0687870:CDS 45.0%
AACACATGTACGACCACATC+AGG + chr4_4:52851763-52851782 None:intergenic 45.0%
AGTAGCATTGCACTGCAGTT+GGG + chr4_4:52851798-52851817 None:intergenic 45.0%
CTGCATCAGCAATATTGTGG+AGG - chr4_4:52851816-52851835 Msa0687870:intron 45.0%
AGGCAACTTGAAACCATGGA+GGG - chr4_4:52851836-52851855 Msa0687870:intron 45.0%
TCATACTCAGCAGCAGTCTA+GGG + chr4_4:52852077-52852096 None:intergenic 45.0%
ATCATACTCAGCAGCAGTCT+AGG + chr4_4:52852078-52852097 None:intergenic 45.0%
TGCCGTACACTGATGTTCTT+TGG - chr4_4:52852252-52852271 Msa0687870:intron 45.0%
GCCGTACACTGATGTTCTTT+GGG - chr4_4:52852253-52852272 Msa0687870:intron 45.0%
CCCCAAAGAACATCAGTGTA+CGG + chr4_4:52852257-52852276 None:intergenic 45.0%
CCGTACACTGATGTTCTTTG+GGG - chr4_4:52852254-52852273 Msa0687870:intron 45.0%
GTTTCTCTTAGACCACCACT+TGG - chr4_4:52852883-52852902 Msa0687870:intron 45.0%
ATGCATTATCTGGGCAGTTG+TGG + chr4_4:52852939-52852958 None:intergenic 45.0%
!! GCAAAGAGTTGGTGCAATTG+TGG - chr4_4:52853102-52853121 Msa0687870:intron 45.0%
GTTACCTTGCACAGCGTAAT+GGG - chr4_4:52853205-52853224 Msa0687870:intron 45.0%
! GCAGAGTCATGATTTTGCAG+TGG - chr4_4:52853406-52853425 Msa0687870:intron 45.0%
!! ATCATGGCTTTGGTTCTAGC+CGG - chr4_4:52853463-52853482 Msa0687870:intron 45.0%
GCACTGCATCATAGACAAAC+TGG + chr4_4:52853797-52853816 None:intergenic 45.0%
GCAGTGCAAAGCCTAAATCT+TGG - chr4_4:52853810-52853829 Msa0687870:CDS 45.0%
CACTAAGTACAAGCTTGTGC+TGG + chr4_4:52854610-52854629 None:intergenic 45.0%
!! CTTTGCTTTGCTGTTCGAAC+CGG - chr4_4:52854632-52854651 Msa0687870:CDS 45.0%
TCGAACCGGCAATACGTATT+TGG - chr4_4:52854646-52854665 Msa0687870:CDS 45.0%
CGAACCGGCAATACGTATTT+GGG - chr4_4:52854647-52854666 Msa0687870:CDS 45.0%
! GTGGATTATGCACGTTGGAT+AGG - chr4_4:52854773-52854792 Msa0687870:CDS 45.0%
GGATTATGCACGTTGGATAG+GGG - chr4_4:52854775-52854794 Msa0687870:CDS 45.0%
! GGGTTTCAGGTCAAAAACAC+AGG + chr4_4:52855148-52855167 None:intergenic 45.0%
TCATGCTAGAGCAAGGAATG+GGG + chr4_4:52855173-52855192 None:intergenic 45.0%
CTCATGCTAGAGCAAGGAAT+GGG + chr4_4:52855174-52855193 None:intergenic 45.0%
TCTCATGCTAGAGCAAGGAA+TGG + chr4_4:52855175-52855194 None:intergenic 45.0%
!!! TTATTTTTTTTTTTTACTTT+TGG - chr4_4:52854382-52854401 Msa0687870:intron 5.0%
ATGGGAAGAAGGAGGAACGA+AGG + chr4_4:52850775-52850794 None:intergenic 50.0%
AGAAGGGAGGGATTTAGGAG+TGG + chr4_4:52850820-52850839 None:intergenic 50.0%
GAGAAGGAGTGATACGGAGA+CGG + chr4_4:52850866-52850885 None:intergenic 50.0%
CGGAAAGAAGGAGAAGGAGA+AGG + chr4_4:52850882-52850901 None:intergenic 50.0%
! CGGTGGTTGATACGGAAAGA+AGG + chr4_4:52850894-52850913 None:intergenic 50.0%
! GATCTGTGCGGTGGTTGATA+CGG + chr4_4:52850902-52850921 None:intergenic 50.0%
! GAAAGAAGGTACGGCGGAAT+CGG + chr4_4:52850946-52850965 None:intergenic 50.0%
TTCGACGGCGGAGATTCATT+CGG - chr4_4:52850963-52850982 Msa0687870:three_prime_UTR 50.0%
GGAGATTCATTCGGAGGACA+CGG - chr4_4:52850972-52850991 Msa0687870:three_prime_UTR 50.0%
GGAGACGGAGAAAGCAATGA+CGG - chr4_4:52851035-52851054 Msa0687870:three_prime_UTR 50.0%
! AGCAATGACGGAGGAAAGAG+CGG - chr4_4:52851047-52851066 Msa0687870:three_prime_UTR 50.0%
!! AAAGAGCGGCGGATTGAATG+AGG - chr4_4:52851061-52851080 Msa0687870:three_prime_UTR 50.0%
! GTTGTTGTTGTTGGCGCAAG+CGG - chr4_4:52851085-52851104 Msa0687870:three_prime_UTR 50.0%
! TTGTTGTTGTTGGCGCAAGC+GGG - chr4_4:52851086-52851105 Msa0687870:three_prime_UTR 50.0%
ATAGCCGAAGCTAAGTCAGC+CGG + chr4_4:52851131-52851150 None:intergenic 50.0%
AACCTCTCAACTACAGACGC+CGG + chr4_4:52851170-52851189 None:intergenic 50.0%
AGAAGTCTCCGTTTATGCGG+TGG - chr4_4:52851201-52851220 Msa0687870:intron 50.0%
ATGCGGTGGTTGCTTCAGTT+TGG - chr4_4:52851215-52851234 Msa0687870:intron 50.0%
GTTGGATTTGAATGCGGCGT+CGG - chr4_4:52851284-52851303 Msa0687870:CDS 50.0%
GTAGCATTGCACTGCAGTTG+GGG + chr4_4:52851797-52851816 None:intergenic 50.0%
CAGTAGCATTGCACTGCAGT+TGG + chr4_4:52851799-52851818 None:intergenic 50.0%
GTGGAGGCAACTTGAAACCA+TGG - chr4_4:52851832-52851851 Msa0687870:intron 50.0%
GAGGCAACTTGAAACCATGG+AGG - chr4_4:52851835-52851854 Msa0687870:intron 50.0%
ATACTCAGCAGCAGTCTAGG+GGG + chr4_4:52852075-52852094 None:intergenic 50.0%
CATACTCAGCAGCAGTCTAG+GGG + chr4_4:52852076-52852095 None:intergenic 50.0%
GGAAATTGTGTTCGCCGATG+TGG - chr4_4:52852127-52852146 Msa0687870:intron 50.0%
CTAAGAGAAACCGTAGGTGC+AGG + chr4_4:52852874-52852893 None:intergenic 50.0%
GGTGGTCTAAGAGAAACCGT+AGG + chr4_4:52852880-52852899 None:intergenic 50.0%
CTGCCCAGATAATGCATTCC+AGG - chr4_4:52852942-52852961 Msa0687870:intron 50.0%
GGTTACCTTGCACAGCGTAA+TGG - chr4_4:52853204-52853223 Msa0687870:intron 50.0%
! GGGTCCAAGCTTTTTGCAGT+TGG - chr4_4:52853225-52853244 Msa0687870:intron 50.0%
AGTTGGATCTGCTTCGTCAC+TGG - chr4_4:52853242-52853261 Msa0687870:intron 50.0%
!! TGGCAGTTTCTAGCAACCTC+AGG - chr4_4:52854244-52854263 Msa0687870:intron 50.0%
! AGCTTGTGCTGGTGCAACAA+AGG + chr4_4:52854599-52854618 None:intergenic 50.0%
!! GATGGGTGGATTATGCACGT+TGG - chr4_4:52854768-52854787 Msa0687870:CDS 50.0%
! AAGGAATGGGGATGGGTTTC+AGG + chr4_4:52855161-52855180 None:intergenic 50.0%
CTAGAGCAAGGAATGGGGAT+GGG + chr4_4:52855168-52855187 None:intergenic 50.0%
CTGCATCTCATGCTAGAGCA+AGG + chr4_4:52855180-52855199 None:intergenic 50.0%
CTTGCTCTAGCATGAGATGC+AGG - chr4_4:52855178-52855197 Msa0687870:five_prime_UTR 50.0%
GGGAGGGATTTAGGAGTGGA+AGG + chr4_4:52850816-52850835 None:intergenic 55.0%
ATACGGAGACGGAGGGAAAG+TGG + chr4_4:52850855-52850874 None:intergenic 55.0%
AGGAGTGATACGGAGACGGA+GGG + chr4_4:52850862-52850881 None:intergenic 55.0%
AAGGAGTGATACGGAGACGG+AGG + chr4_4:52850863-52850882 None:intergenic 55.0%
TGAAGAGAGGATCTGTGCGG+TGG + chr4_4:52850911-52850930 None:intergenic 55.0%
TCCGCCGTACCTTCTTTCGA+CGG - chr4_4:52850948-52850967 Msa0687870:three_prime_UTR 55.0%
TCCGCCGTCGAAAGAAGGTA+CGG + chr4_4:52850955-52850974 None:intergenic 55.0%
GAATCTCCGCCGTCGAAAGA+AGG + chr4_4:52850960-52850979 None:intergenic 55.0%
GATTCATTCGGAGGACACGG+TGG - chr4_4:52850975-52850994 Msa0687870:three_prime_UTR 55.0%
!! AATGACGGACATGGACACGG+AGG - chr4_4:52851014-52851033 Msa0687870:three_prime_UTR 55.0%
GACGGAGAAAGCAATGACGG+AGG - chr4_4:52851038-52851057 Msa0687870:three_prime_UTR 55.0%
! AATGACGGAGGAAAGAGCGG+CGG - chr4_4:52851050-52851069 Msa0687870:three_prime_UTR 55.0%
! TGTTGTTGTTGGCGCAAGCG+GGG - chr4_4:52851087-52851106 Msa0687870:three_prime_UTR 55.0%
!! TGTGCCGGCTGACTTAGCTT+CGG - chr4_4:52851124-52851143 Msa0687870:CDS 55.0%
TTCCGGCGTCTGTAGTTGAG+AGG - chr4_4:52851165-52851184 Msa0687870:intron 55.0%
CGGTGGTTGCTTCAGTTTGG+TGG - chr4_4:52851218-52851237 Msa0687870:intron 55.0%
CTGCTGCTGAGTATGATCGC+CGG - chr4_4:52852081-52852100 Msa0687870:intron 55.0%
CACCACTTGGAGTCAGTGCA+GGG - chr4_4:52852896-52852915 Msa0687870:intron 55.0%
ACCACTTGGAGTCAGTGCAG+GGG - chr4_4:52852897-52852916 Msa0687870:intron 55.0%
CAGAGAGAGCAACCTGTGGA+AGG + chr4_4:52853063-52853082 None:intergenic 55.0%
CTTCCACAGGTTGCTCTCTC+TGG - chr4_4:52853061-52853080 Msa0687870:CDS 55.0%
GATCCAGAGAGAGCAACCTG+TGG + chr4_4:52853067-52853086 None:intergenic 55.0%
TGGACCCATTACGCTGTGCA+AGG + chr4_4:52853212-52853231 None:intergenic 55.0%
GCTAGAGCAAGGAATGGGGA+TGG + chr4_4:52855169-52855188 None:intergenic 55.0%
AGCTGCGCACGACTCACTCA+GGG + chr4_4:52850709-52850728 None:intergenic 60.0%
AAGCTGCGCACGACTCACTC+AGG + chr4_4:52850710-52850729 None:intergenic 60.0%
GGAGACGGAGGGAAAGTGGA+GGG + chr4_4:52850851-52850870 None:intergenic 60.0%
GTACGGCGGAATCGGTGGAA+TGG + chr4_4:52850938-52850957 None:intergenic 60.0%
! AGAAGGTACGGCGGAATCGG+TGG + chr4_4:52850943-52850962 None:intergenic 60.0%
! GCCGTCGAAAGAAGGTACGG+CGG + chr4_4:52850952-52850971 None:intergenic 60.0%
GCCGTACCTTCTTTCGACGG+CGG - chr4_4:52850951-52850970 Msa0687870:three_prime_UTR 60.0%
GACGGCGGAGATTCATTCGG+AGG - chr4_4:52850966-52850985 Msa0687870:three_prime_UTR 60.0%
GGAGGACACGGTGGAGATGA+CGG - chr4_4:52850984-52851003 Msa0687870:three_prime_UTR 60.0%
GGACATGGACACGGAGGAGA+CGG - chr4_4:52851020-52851039 Msa0687870:three_prime_UTR 60.0%
! GAGGTCGTTGGAGAGTGTGC+CGG - chr4_4:52851109-52851128 Msa0687870:CDS 60.0%
TGCGGATGCGAAGCGCATTG+TGG - chr4_4:52851507-52851526 Msa0687870:intron 60.0%
!! CCTGCACTGACTCCAAGTGG+TGG + chr4_4:52852898-52852917 None:intergenic 60.0%
CCACCACTTGGAGTCAGTGC+AGG - chr4_4:52852895-52852914 Msa0687870:intron 60.0%
GCTGCGCACGACTCACTCAG+GGG + chr4_4:52850708-52850727 None:intergenic 65.0%
CGGAGACGGAGGGAAAGTGG+AGG + chr4_4:52850852-52850871 None:intergenic 65.0%
TGTTGTTGGCGCAAGCGGGG+AGG - chr4_4:52851090-52851109 Msa0687870:exon 65.0%
!!! CGGCGTCGGCGTTTTCACCA+AGG - chr4_4:52851298-52851317 Msa0687870:CDS 65.0%
!! GCCCCTGCACTGACTCCAAG+TGG + chr4_4:52852901-52852920 None:intergenic 65.0%
GGCGCAAGCGGGGAGGTCGT+TGG - chr4_4:52851097-52851116 Msa0687870:exon 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 52850675 52855238 52850675 ID=Msa0687870;Name=Msa0687870
chr4_4 mRNA 52850675 52855238 52850675 ID=Msa0687870-mRNA-1;Parent=Msa0687870;Name=Msa0687870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=78|1|1|1|1|1|8|433|389
chr4_4 exon 52850675 52851144 52850675 ID=Msa0687870-mRNA-1:exon:13974;Parent=Msa0687870-mRNA-1
chr4_4 exon 52851235 52851360 52851235 ID=Msa0687870-mRNA-1:exon:13973;Parent=Msa0687870-mRNA-1
chr4_4 exon 52851648 52851787 52851648 ID=Msa0687870-mRNA-1:exon:13972;Parent=Msa0687870-mRNA-1
chr4_4 exon 52852650 52852694 52852650 ID=Msa0687870-mRNA-1:exon:13971;Parent=Msa0687870-mRNA-1
chr4_4 exon 52852790 52852843 52852790 ID=Msa0687870-mRNA-1:exon:13970;Parent=Msa0687870-mRNA-1
chr4_4 exon 52852950 52853081 52852950 ID=Msa0687870-mRNA-1:exon:13969;Parent=Msa0687870-mRNA-1
chr4_4 exon 52853765 52853833 52853765 ID=Msa0687870-mRNA-1:exon:13968;Parent=Msa0687870-mRNA-1
chr4_4 exon 52854594 52855238 52854594 ID=Msa0687870-mRNA-1:exon:13967;Parent=Msa0687870-mRNA-1
chr4_4 five_prime_UTR 52855161 52855238 52855161 ID=Msa0687870-mRNA-1:five_prime_utr;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52854594 52855160 52854594 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52853765 52853833 52853765 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52852950 52853081 52852950 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52852790 52852843 52852790 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52852650 52852694 52852650 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52851648 52851787 52851648 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52851235 52851360 52851235 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 CDS 52851108 52851144 52851108 ID=Msa0687870-mRNA-1:cds;Parent=Msa0687870-mRNA-1
chr4_4 three_prime_UTR 52850675 52851107 52850675 ID=Msa0687870-mRNA-1:three_prime_utr;Parent=Msa0687870-mRNA-1
Gene Sequence

>Msa0687870

ATGTCGTCGATCGCTTTTTCCTTCGTTCCTCCTTCTTCCCATTCTCTTTCTTCTCATTCTCCTTCCACTCCTAAATCCCTCCCTTCTTTTTCTTTCCCTCCACTTTCCCTCCGTCTCCGTATCACTCCTTCTCCTTCTCCTTCTTTCCGTATCAACCACCGCACAGATCCTCTCTTCATTCTCCATTCCACCGATTCCGCCGTACCTTCTTTCGACGGCGGAGATTCATTCGGAGGACACGGTGGAGATGACGGAAAAAACAATGACGGACATGGACACGGAGGAGACGGAGAAAGCAATGACGGAGGAAAGAGCGGCGGATTGAATGAGGCGTTGTTGTTGTTGGCGCAAGCGGGGAGGTCGTTGGAGAGTGTGCCGGCTGACTTAGCTTCGGCTATCAAGGAAGGTAAGATTCCGGCGTCTGTAGTTGAGAGGTTTTTGGAGCTTGAGAAGTCTCCGTTTATGCGGTGGTTGCTTCAGTTTGGTGGTTTTAAAGAGCGTCTTCTTGCTGATGATCTTTTTCTTGCTAAGGTTGGATTTGAATGCGGCGTCGGCGTTTTCACCAAGACTGCTGCTGAGTATGATCGCCGGAGAGAGAAATTTTTCGATGAGCTGGAAATTGTGTTCGCCGATGTGGTCATGGCTATAATCGCAGATTTCATGCTAGTTTATTTACCTGCACCTACGGTTTCTCTTAGACCACCACTTGGAGTCAGTGCAGGGGCTATTACTAAGTTTTTCCACAACTGCCCAGATAATGCATTCCAGGTTGCTCTCTCTGGATCATCATATTCTTTCTTGCAAAGAGTTGGTGCAATTGTGCGTAATGGGTCCAAGCTTTTTGCAGTTGGATCTGCTTCGTCACTGGTTGGGACAGTTGTGACTAATGCCGCAATTAATGCAAAGAAGGCTGTTAATAAGGATTCTGCAGAGGAAATTGAAAATGTTCCCATATTTTCTACCAGTGCTGCTTATGGTGTTTATATGGCAGTTTCTAGCAACCTCAGGTACCAAGTTCTTTCTGGAATTATTGAACAGAGGCTTTTGGAACCTTTGTTGCACCAGCACAAGCTTGTACTTAGTGCTCTTTGCTTTGCTGTTCGAACCGGCAATACGTATTTGGGTTCATTATTATGGGTGGATTATGCACGTTGGATAGGGGTTCAGTAG
Protein sequence

>Msa0687870

MSSIAFSFVPPSSHSLSSHSPSTPKSLPSFSFPPLSLRLRITPSPSPSFRINHRTDPLFILHSTDSAVPSFDGGDSFGGHGGDDGKNNDGHGHGGDGESNDGGKSGGLNEALLLLAQAGRSLESVPADLASAIKEGKIPASVVERFLELEKSPFMRWLLQFGGFKERLLADDLFLAKVGFECGVGVFTKTAAEYDRRREKFFDELEIVFADVVMAIIADFMLVYLPAPTVSLRPPLGVSAGAITKFFHNCPDNAFQVALSGSSYSFLQRVGAIVRNGSKLFAVGSASSLVGTVVTNAAINAKKAVNKDSAEEIENVPIFSTSAAYGVYMAVSSNLRYQVLSGIIEQRLLEPLLHQHKLVLSALCFAVRTGNTYLGSLLWVDYARWIGVQ*