AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1313340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313340 MtrunA17_Chr8g0356911 26.490 302 168 10 3 279 4 276 1.14e-22 96.7
Msa1313340 MtrunA17_Chr2g0309701 28.085 235 145 9 1 223 4 226 4.23e-17 82.4
Msa1313340 MtrunA17_Chr1g0175941 24.296 284 167 7 17 279 32 288 1.39e-16 81.6
Msa1313340 MtrunA17_Chr8g0356311 28.659 164 106 4 1 161 1 156 3.51e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313340 AT1G79310.1 28.313 166 108 5 1 163 1 158 1.07e-15 78.6
Msa1313340 AT1G79340.1 29.268 164 105 4 1 161 1 156 1.17e-14 75.5
Msa1313340 AT1G79330.1 28.049 164 107 4 1 161 1 156 3.28e-14 73.9
Msa1313340 AT1G79320.1 28.659 164 106 4 1 161 1 156 3.26e-13 70.9

Find 95 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACATATAAAACTATAAT+TGG 0.235812 8_4:-11256940 None:intergenic
AGGATGAAAGATTCGATATA+GGG 0.266282 8_4:+11251555 Msa1313340:CDS
GCGAAGGATTGCTAGGCTTT+TGG 0.269483 8_4:+11252731 Msa1313340:CDS
GGTGAGAGGTTCAATGGATT+TGG 0.295447 8_4:+11252561 Msa1313340:CDS
GGCATATCCCTTCTATCTTT+CGG 0.298241 8_4:-11256919 None:intergenic
AACACCAAATTGCTGGGGTC+TGG 0.319053 8_4:+11253807 Msa1313340:CDS
TGCACTTTCTCTTCTTCCCT+TGG 0.325486 8_4:-11252686 None:intergenic
CTCTCCTCAAGGCTGTTAAA+AGG 0.327370 8_4:+11252643 Msa1313340:CDS
GAGGATGAAAGATTCGATAT+AGG 0.329537 8_4:+11251554 Msa1313340:CDS
TCGAATCTTTCATCCTCCTT+AGG 0.336446 8_4:-11251548 None:intergenic
TTTGGTGTTGAAGGTATAAC+AGG 0.346830 8_4:-11253793 None:intergenic
CAAGCAAGGCTGGACTTTCT+AGG 0.356897 8_4:+11252813 Msa1313340:CDS
TACCTTCAACACCAAATTGC+TGG 0.365882 8_4:+11253800 Msa1313340:CDS
ACCGATGATTCTCGTATCTA+TGG 0.370000 8_4:+11252243 Msa1313340:CDS
GTACCCAGACCCCAGCAATT+TGG 0.385219 8_4:-11253811 None:intergenic
CCCCAGCAATTTGGTGTTGA+AGG 0.398356 8_4:-11253802 None:intergenic
AGAACTAAAGCTAAAAGATA+TGG 0.401543 8_4:+11251595 Msa1313340:CDS
CCGTTGAACCGAAAGATAGA+AGG 0.406043 8_4:+11256911 Msa1313340:CDS
CTTTCTCTTCTTCCCTTGGT+GGG 0.408662 8_4:-11252682 None:intergenic
CGAATCTTTCATCCTCCTTA+GGG 0.417346 8_4:-11251547 None:intergenic
AGAAGATTGTTTGTTGCAGC+AGG 0.433609 8_4:-11252535 None:intergenic
TGAAGCACTTACTATGCAAT+TGG 0.434616 8_4:-11252837 None:intergenic
GGCGCCGCTAAGGAACAAAT+TGG 0.441061 8_4:+11252450 Msa1313340:CDS
AGTTGCATGTATATCAAATC+CGG 0.442599 8_4:+11251409 Msa1313340:CDS
ACTTTCTCTTCTTCCCTTGG+TGG 0.444200 8_4:-11252683 None:intergenic
ACCTTCAACACCAAATTGCT+GGG 0.444412 8_4:+11253801 Msa1313340:CDS
GCATTAGGAGACATCGTTGT+TGG 0.444879 8_4:+11256806 Msa1313340:CDS
GGAGCTCCTGATGCACGTCC+AGG 0.447425 8_4:+11251431 Msa1313340:CDS
TCTATAGGTGAGAGGTTCAA+TGG 0.447603 8_4:+11252555 Msa1313340:CDS
AAAGCGTGGCACCTTGTTTG+TGG 0.447697 8_4:+11252617 Msa1313340:CDS
TGATTACAACTATCGTAACT+TGG 0.460377 8_4:-11253761 None:intergenic
TGCAACAAACAATCTTCTAT+AGG 0.464135 8_4:+11252540 Msa1313340:CDS
CTAGAAAGTCCAGCCTTGCT+TGG 0.464626 8_4:-11252812 None:intergenic
AGATGGGGAAACCCAACAAC+CGG 0.467871 8_4:+11252770 Msa1313340:CDS
ACCATCCCCGGGTACAGATT+CGG 0.474186 8_4:-11251621 None:intergenic
ATACAACCTGGACGTGCATC+AGG 0.474598 8_4:-11251437 None:intergenic
ACTATCGTAACTTGGACTCT+TGG 0.477629 8_4:-11253753 None:intergenic
AAACAATACCACACCATCCC+CGG 0.480304 8_4:-11251633 None:intergenic
AGCATCGTTTGCTAAAATAG+TGG 0.480943 8_4:+11256835 Msa1313340:CDS
AGATTAAGCTGATATGTTTG+CGG 0.481248 8_4:-11251511 None:intergenic
ACGATATGACTTGTAGAGTT+GGG 0.481724 8_4:-11252474 None:intergenic
GACGCTATCATTACTGCATT+AGG 0.482601 8_4:-11252513 None:intergenic
CCTTAGCGGCGCCTTCGAAA+AGG 0.483351 8_4:-11252440 None:intergenic
GCCACAACTAATAGTAAGAA+AGG 0.484068 8_4:-11256767 None:intergenic
GCATGGAGGAACTGTGGAGG+AGG 0.484418 8_4:+11252179 Msa1313340:CDS
ACACCAAATTGCTGGGGTCT+GGG 0.485035 8_4:+11253808 Msa1313340:CDS
CCTCTCTTGTACGGTGATTG+TGG 0.490171 8_4:+11252398 Msa1313340:CDS
TAGCGACACCCAAGCAAGGC+TGG 0.490789 8_4:+11252803 Msa1313340:CDS
GTAAAACTGAGAGTTGCATT+AGG 0.497485 8_4:+11256791 Msa1313340:CDS
TAGAAAGTCCAGCCTTGCTT+GGG 0.500080 8_4:-11252811 None:intergenic
CCTTCTATCTTTCGGTTCAA+CGG 0.506078 8_4:-11256911 None:intergenic
GGGACCAATTTGTTCCTTAG+CGG 0.507529 8_4:-11252454 None:intergenic
ATGGTCTCCGAATCTGTACC+CGG 0.509670 8_4:+11251614 Msa1313340:CDS
GACGATATGACTTGTAGAGT+TGG 0.510842 8_4:-11252475 None:intergenic
GAATTCAAGTGATTACTACT+TGG 0.517361 8_4:+11252215 Msa1313340:CDS
GGATGAAAGATTCGATATAG+GGG 0.520357 8_4:+11251556 Msa1313340:CDS
TCCGAATCTGTACCCGGGGA+TGG 0.522031 8_4:+11251620 Msa1313340:CDS
ATCTGTACCCGGGGATGGTG+TGG 0.522914 8_4:+11251625 Msa1313340:CDS
ACCGTACAAGAGAGGTTAGC+AGG 0.524948 8_4:-11252390 None:intergenic
GTTTGTGGAATCTCTCCTCA+AGG 0.525811 8_4:+11252632 Msa1313340:CDS
GGACGTGCATCAGGAGCTCC+CGG 0.526298 8_4:-11251428 None:intergenic
GGTTGGTGCGAAGGATTGCT+AGG 0.526445 8_4:+11252724 Msa1313340:CDS
TCCTTTCTTACTATTAGTTG+TGG 0.529887 8_4:+11256766 Msa1313340:CDS
CTTAGATATAAAACACCCTA+AGG 0.531876 8_4:+11251532 Msa1313340:CDS
AGTGCAGAGTCACCAACAAA+AGG 0.536032 8_4:+11252703 Msa1313340:CDS
CGTTGAACCGAAAGATAGAA+GGG 0.552190 8_4:+11256912 Msa1313340:CDS
AACAATACCACACCATCCCC+GGG 0.553758 8_4:-11251632 None:intergenic
TTAGGAGACATCGTTGTTGG+AGG 0.554237 8_4:+11256809 Msa1313340:CDS
AGCGGCGCCTTCGAAAAGGC+CGG 0.554536 8_4:-11252436 None:intergenic
GTGGACGCTTGTTTCAGCGC+CGG 0.555105 8_4:+11252417 Msa1313340:CDS
TTTATGAACCTCGGGAACAA+TGG 0.557196 8_4:-11252591 None:intergenic
CCAACAAAAGGTTGGTGCGA+AGG 0.564541 8_4:+11252715 Msa1313340:CDS
TCCTGCTAACCTCTCTTGTA+CGG 0.566296 8_4:+11252389 Msa1313340:CDS
ACCATAGATACGAGAATCAT+CGG 0.570225 8_4:-11252244 None:intergenic
GCATCGTTTGCTAAAATAGT+GGG 0.572477 8_4:+11256836 Msa1313340:CDS
TAAGCAGACGTGATACAACC+TGG 0.577441 8_4:-11251449 None:intergenic
AGCGTAGAGTCACCCACCAA+GGG 0.591381 8_4:+11252670 Msa1313340:CDS
GTGGGTGCAGTGAAAGCTGC+AGG 0.603311 8_4:+11256854 Msa1313340:CDS
CAGAGTCACCAACAAAAGGT+TGG 0.603892 8_4:+11252707 Msa1313340:CDS
GTTGCATGTATATCAAATCC+GGG 0.606506 8_4:+11251410 Msa1313340:CDS
GATATCATCCATTGTTCCCG+AGG 0.609122 8_4:+11252583 Msa1313340:CDS
GATGAAAGATTCGATATAGG+GGG 0.619536 8_4:+11251557 Msa1313340:CDS
TTTGTAGCGACACCCAAGCA+AGG 0.619617 8_4:+11252799 Msa1313340:CDS
TGGTCTCCGAATCTGTACCC+GGG 0.625032 8_4:+11251615 Msa1313340:CDS
AAGCGTAGAGTCACCCACCA+AGG 0.632729 8_4:+11252669 Msa1313340:CDS
AACAATCTTCTATAGGTGAG+AGG 0.633433 8_4:+11252547 Msa1313340:CDS
AGATATAAAACACCCTAAGG+AGG 0.640748 8_4:+11251535 Msa1313340:CDS
TACAGGGCATGGAGGAACTG+TGG 0.641620 8_4:+11252173 Msa1313340:intron
GAGGAGAGATTCCACAAACA+AGG 0.648421 8_4:-11252628 None:intergenic
AGGGCATGGAGGAACTGTGG+AGG 0.649291 8_4:+11252176 Msa1313340:intron
CCACAATCACCGTACAAGAG+AGG 0.649619 8_4:-11252398 None:intergenic
GGTCTCCGAATCTGTACCCG+GGG 0.650650 8_4:+11251616 Msa1313340:CDS
GGTGCAGTGAAAGCTGCAGG+TGG 0.683049 8_4:+11256857 Msa1313340:CDS
CCTTCAACACCAAATTGCTG+GGG 0.689798 8_4:+11253802 Msa1313340:CDS
AATTTGTATACAGGGCATGG+AGG 0.718727 8_4:+11252165 Msa1313340:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAGTTAATTAATAC+TGG + chr8_4:11253168-11253187 Msa1313340:intron 10.0%
!! TTAAAACTAATCATATTAAA+GGG - chr8_4:11254374-11254393 None:intergenic 10.0%
!!! TTTAAAACTAATCATATTAA+AGG - chr8_4:11254375-11254394 None:intergenic 10.0%
!!! AGTTTTAAAAACAATTATAT+TGG + chr8_4:11254386-11254405 Msa1313340:intron 10.0%
!! TATATATATATTTAGATTGA+TGG + chr8_4:11256535-11256554 Msa1313340:intron 10.0%
!! ATATATATATTTAGATTGAT+GGG + chr8_4:11256536-11256555 Msa1313340:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256290-11256309 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256319-11256338 None:intergenic 100.0%
!!! ATTCTTTTTTCGAAATTTTT+AGG + chr8_4:11251794-11251813 Msa1313340:intron 15.0%
!!! CATTTTTTAGGATAAATTTT+AGG + chr8_4:11251992-11252011 Msa1313340:intron 15.0%
!! AAAAAATATTGGAAAAAGAT+GGG + chr8_4:11252754-11252773 Msa1313340:CDS 15.0%
!! ATTGAAAAATAGAAGAAATT+AGG - chr8_4:11252892-11252911 None:intergenic 15.0%
!!! AAACTTTTTTTTTATCTTTC+AGG + chr8_4:11252940-11252959 Msa1313340:intron 15.0%
!! TATATATATATATATGAGTC+AGG + chr8_4:11253894-11253913 Msa1313340:intron 15.0%
!!! AATTCAATTGTTTTAAATCA+TGG - chr8_4:11254350-11254369 None:intergenic 15.0%
!! TTTAAAAACAATTATATTGG+AGG + chr8_4:11254389-11254408 Msa1313340:intron 15.0%
!!! CTTTGATTTTAAAAAATAGA+CGG - chr8_4:11254823-11254842 None:intergenic 15.0%
!! TATATATATATATATGAGTC+AGG - chr8_4:11253894-11253913 None:intergenic 15.0%
!! ATATATAATCTATTCTGTAA+TGG + chr8_4:11256201-11256220 Msa1313340:intron 15.0%
!!! ATTTTCAAACAAAATAACTT+CGG - chr8_4:11256721-11256740 None:intergenic 15.0%
!!! AAACTTTTGATCAAAAGATA+TGG + chr8_4:11251482-11251501 Msa1313340:CDS 20.0%
!!! AACTTTTGATCAAAAGATAT+GGG + chr8_4:11251483-11251502 Msa1313340:CDS 20.0%
!!! TTTTAGGATAAATTTTAGGA+AGG + chr8_4:11251996-11252015 Msa1313340:intron 20.0%
!!! TTTAGGATAAATTTTAGGAA+GGG + chr8_4:11251997-11252016 Msa1313340:intron 20.0%
!! AGATTTATGAATTTGTATAC+AGG + chr8_4:11252156-11252175 Msa1313340:intron 20.0%
!! GATTTATGAATTTGTATACA+GGG + chr8_4:11252157-11252176 Msa1313340:intron 20.0%
!!! TTGTTCTTATCATTTTTTGA+AGG - chr8_4:11252368-11252387 None:intergenic 20.0%
!! GAAAAAATATTGGAAAAAGA+TGG + chr8_4:11252753-11252772 Msa1313340:CDS 20.0%
!! AAAAATATTGGAAAAAGATG+GGG + chr8_4:11252755-11252774 Msa1313340:CDS 20.0%
!!! TTTGATAAGGTTATGTATTT+TGG + chr8_4:11253114-11253133 Msa1313340:intron 20.0%
!! AAACTTACGGAAAATTATAA+GGG - chr8_4:11253304-11253323 None:intergenic 20.0%
!!! AATAAAATAAAAGTATGCGA+TGG - chr8_4:11254020-11254039 None:intergenic 20.0%
!! TCATAAATTCTACACAAATT+GGG - chr8_4:11254193-11254212 None:intergenic 20.0%
!! TTCATAAATTCTACACAAAT+TGG - chr8_4:11254194-11254213 None:intergenic 20.0%
!! ACAAATAGAAATGAGATTAT+TGG + chr8_4:11254221-11254240 Msa1313340:intron 20.0%
!! ATTGAGTTTATGAATCAATT+TGG + chr8_4:11254251-11254270 Msa1313340:intron 20.0%
!! TTGAGTTTATGAATCAATTT+GGG + chr8_4:11254252-11254271 Msa1313340:intron 20.0%
!!! CGTCTATTTTTTAAAATCAA+AGG + chr8_4:11254821-11254840 Msa1313340:intron 20.0%
!! ATGGGAAAAGATTAAAAAAA+AGG - chr8_4:11255136-11255155 None:intergenic 20.0%
!! TTGTTTGAATTTACATGATT+TGG - chr8_4:11255251-11255270 None:intergenic 20.0%
!!! ATTGATTTGTTTTAATCAAG+AGG - chr8_4:11255466-11255485 None:intergenic 20.0%
!! TCTTGATTAAAACAAATCAA+TGG + chr8_4:11255465-11255484 Msa1313340:intron 20.0%
!! ACAAATCAATGGATAAAATT+TGG + chr8_4:11255476-11255495 Msa1313340:intron 20.0%
!!! ATTTTGTACTCTCTTTTTAA+TGG + chr8_4:11255590-11255609 Msa1313340:intron 20.0%
!!! TTAAAAGTATCTCAAAAGTT+TGG + chr8_4:11255658-11255677 Msa1313340:intron 20.0%
!! AAAAGGGGAAAAAAAAAAAA+CGG - chr8_4:11256339-11256358 None:intergenic 20.0%
! AGAACTAAAGCTAAAAGATA+TGG + chr8_4:11251595-11251614 Msa1313340:CDS 25.0%
!!! TCGATTAAGCTTTAAAGAAA+CGG - chr8_4:11251754-11251773 None:intergenic 25.0%
! CGAAAAAAGAATTAAGCTAA+GGG - chr8_4:11251786-11251805 None:intergenic 25.0%
! TCGAAAAAAGAATTAAGCTA+AGG - chr8_4:11251787-11251806 None:intergenic 25.0%
!!! TTTTTCGAAATTTTTAGGCA+AGG + chr8_4:11251799-11251818 Msa1313340:intron 25.0%
!!! TTTTCGAAATTTTTAGGCAA+GGG + chr8_4:11251800-11251819 Msa1313340:intron 25.0%
!! TTGTTTCACATAGTTTCTTT+TGG + chr8_4:11251961-11251980 Msa1313340:intron 25.0%
!! TGTTTCACATAGTTTCTTTT+GGG + chr8_4:11251962-11251981 Msa1313340:intron 25.0%
!!! TGATGAATTCTGGAAATTTT+TGG + chr8_4:11252055-11252074 Msa1313340:intron 25.0%
!!! GATGAATTCTGGAAATTTTT+GGG + chr8_4:11252056-11252075 Msa1313340:intron 25.0%
!!! TAGGCTTTTGGAAAAAATAT+TGG + chr8_4:11252743-11252762 Msa1313340:CDS 25.0%
!! AATTGAACAGACAATTTTGA+TGG - chr8_4:11253066-11253085 None:intergenic 25.0%
! TATTCCTGTAGAATTTGATA+AGG + chr8_4:11253101-11253120 Msa1313340:intron 25.0%
! ATAACCTTATCAAATTCTAC+AGG - chr8_4:11253108-11253127 None:intergenic 25.0%
!!! TGGATAAGTTCTCTTTTTTT+AGG + chr8_4:11253134-11253153 Msa1313340:intron 25.0%
! AACTTACGGAAAATTATAAG+GGG - chr8_4:11253303-11253322 None:intergenic 25.0%
! CAAACTTACGGAAAATTATA+AGG - chr8_4:11253305-11253324 None:intergenic 25.0%
!! CTTATAATTTTCCGTAAGTT+TGG + chr8_4:11253303-11253322 Msa1313340:intron 25.0%
! ACAAGACTTTGTACTAAATA+GGG - chr8_4:11253527-11253546 None:intergenic 25.0%
! AACAAGACTTTGTACTAAAT+AGG - chr8_4:11253528-11253547 None:intergenic 25.0%
! ACAGAAAGAAAAAAAACTGT+CGG - chr8_4:11253586-11253605 None:intergenic 25.0%
!!! TTTTTTTGTTGAAGCTGTTT+TGG + chr8_4:11253701-11253720 Msa1313340:intron 25.0%
! CATTGATCATAAAAGATAGA+GGG - chr8_4:11253942-11253961 None:intergenic 25.0%
!!! AAATTGGGTTTTATCAAAAG+GGG - chr8_4:11254178-11254197 None:intergenic 25.0%
!!! CAAATTGGGTTTTATCAAAA+GGG - chr8_4:11254179-11254198 None:intergenic 25.0%
!!! ACAAATTGGGTTTTATCAAA+AGG - chr8_4:11254180-11254199 None:intergenic 25.0%
! ATTGAGACGATAGAAATAAA+AGG + chr8_4:11254512-11254531 Msa1313340:intron 25.0%
! ATTCATTTATGTTGATCCAA+AGG - chr8_4:11254673-11254692 None:intergenic 25.0%
! TTTGGATCAACATAAATGAA+TGG + chr8_4:11254672-11254691 Msa1313340:intron 25.0%
! ATAAATGAATGGTCATGATT+TGG + chr8_4:11254683-11254702 Msa1313340:intron 25.0%
! ATAGAAAGAATATTGAAGAG+TGG - chr8_4:11255000-11255019 None:intergenic 25.0%
!! TTCTTCAATATTCTTGTTTG+CGG + chr8_4:11255025-11255044 Msa1313340:intron 25.0%
!! TTTTAATCTTTTCCCATTGA+AGG + chr8_4:11255139-11255158 Msa1313340:intron 25.0%
! AACAAAAAAGAAGTGAATCA+TGG + chr8_4:11255183-11255202 Msa1313340:intron 25.0%
! TTTCAACAATCAAATTCTCA+CGG - chr8_4:11255224-11255243 None:intergenic 25.0%
!! AATTGAGTTGTTTATGATAG+AGG - chr8_4:11255317-11255336 None:intergenic 25.0%
! TCTATCATAAACAACTCAAT+TGG + chr8_4:11255316-11255335 Msa1313340:intron 25.0%
! TCATCAATCACAGAAAAAAA+CGG - chr8_4:11255943-11255962 None:intergenic 25.0%
! TTGTAATCAGAAACTGATTA+TGG + chr8_4:11256125-11256144 Msa1313340:intron 25.0%
!! TTATGAGATTTTACTTCTGT+TGG - chr8_4:11256233-11256252 None:intergenic 25.0%
! AAAGGGGAAAAAAAAAAAAC+GGG - chr8_4:11256338-11256357 None:intergenic 25.0%
! TAACAATTGACACAGAAAAA+GGG - chr8_4:11256355-11256374 None:intergenic 25.0%
AGTTGCATGTATATCAAATC+CGG + chr8_4:11251409-11251428 Msa1313340:CDS 30.0%
AGATTAAGCTGATATGTTTG+CGG - chr8_4:11251514-11251533 None:intergenic 30.0%
CTTAGATATAAAACACCCTA+AGG + chr8_4:11251532-11251551 Msa1313340:CDS 30.0%
AGGATGAAAGATTCGATATA+GGG + chr8_4:11251555-11251574 Msa1313340:CDS 30.0%
AAAAGAATTAAGCTAAGGGA+CGG - chr8_4:11251782-11251801 None:intergenic 30.0%
!! TTTCGAAATTTTTAGGCAAG+GGG + chr8_4:11251801-11251820 Msa1313340:intron 30.0%
! GGTTTTCTGTTTATTCACAA+AGG + chr8_4:11251895-11251914 Msa1313340:intron 30.0%
!!! TTGGGTGCTATTCATTTTTT+AGG + chr8_4:11251980-11251999 Msa1313340:intron 30.0%
!!! ATTTTTGGGTCAACAAATTC+TGG + chr8_4:11252070-11252089 Msa1313340:intron 30.0%
GAATTCAAGTGATTACTACT+TGG + chr8_4:11252215-11252234 Msa1313340:CDS 30.0%
TGCAACAAACAATCTTCTAT+AGG + chr8_4:11252540-11252559 Msa1313340:CDS 30.0%
TGAAATTGAATAGTCAAACC+TGG - chr8_4:11252995-11253014 None:intergenic 30.0%
TAATCCATGTTTGAGAAAAG+AGG + chr8_4:11253251-11253270 Msa1313340:intron 30.0%
! AAAACCTCTTTTCTCAAACA+TGG - chr8_4:11253258-11253277 None:intergenic 30.0%
!! TACAAAGTCTTGTTAAGTTG+TGG + chr8_4:11253534-11253553 Msa1313340:intron 30.0%
! TTGATGACACATCAAGTAAT+AGG + chr8_4:11253608-11253627 Msa1313340:intron 30.0%
TGATGACTGATGTGAAATAT+CGG + chr8_4:11253660-11253679 Msa1313340:intron 30.0%
TGATTACAACTATCGTAACT+TGG - chr8_4:11253764-11253783 None:intergenic 30.0%
CCATTGATCATAAAAGATAG+AGG - chr8_4:11253943-11253962 None:intergenic 30.0%
! CCTCTATCTTTTATGATCAA+TGG + chr8_4:11253940-11253959 Msa1313340:intron 30.0%
AAGAATAGCGATATTGGATT+TGG - chr8_4:11254090-11254109 None:intergenic 30.0%
TGAAGAAAGAATAGCGATAT+TGG - chr8_4:11254096-11254115 None:intergenic 30.0%
TATGAGAGGAATTAAGCAAA+GGG - chr8_4:11254128-11254147 None:intergenic 30.0%
ATATGAGAGGAATTAAGCAA+AGG - chr8_4:11254129-11254148 None:intergenic 30.0%
TTTGCTTAATTCCTCTCATA+TGG + chr8_4:11254128-11254147 Msa1313340:intron 30.0%
TGAATCAATTTGGGCTTATT+AGG + chr8_4:11254261-11254280 Msa1313340:intron 30.0%
CAATTATATTGGAGGAGAAA+AGG + chr8_4:11254397-11254416 Msa1313340:intron 30.0%
CATATCCAATTCCATGTTAA+TGG + chr8_4:11254449-11254468 Msa1313340:intron 30.0%
! AGATTGGCAAAACATCTTTT+AGG + chr8_4:11254558-11254577 Msa1313340:intron 30.0%
!! GCAAAACATCTTTTAGGAAT+GGG + chr8_4:11254564-11254583 Msa1313340:intron 30.0%
!! CAAAACATCTTTTAGGAATG+GGG + chr8_4:11254565-11254584 Msa1313340:intron 30.0%
!! AAAACATCTTTTAGGAATGG+GGG + chr8_4:11254566-11254585 Msa1313340:intron 30.0%
TACTCATGTACATTCAATGA+AGG + chr8_4:11254610-11254629 Msa1313340:intron 30.0%
AGTGAATAAATGTGAACCTT+TGG + chr8_4:11254654-11254673 Msa1313340:intron 30.0%
AAAAATAGACGGTTGAGATT+TGG - chr8_4:11254812-11254831 None:intergenic 30.0%
! CTTAATTTGAACGAATCTTC+AGG + chr8_4:11254936-11254955 Msa1313340:intron 30.0%
!! GAATCATGGAAGATTTTGAT+TGG + chr8_4:11255197-11255216 Msa1313340:intron 30.0%
AGTTGTTTATGATAGAGGAT+TGG - chr8_4:11255312-11255331 None:intergenic 30.0%
ACAACTCAATTGGTGTAATT+AGG + chr8_4:11255326-11255345 Msa1313340:intron 30.0%
!! TTCGGAAAAAAGAAGTACTA+AGG + chr8_4:11255410-11255429 Msa1313340:intron 30.0%
TAAGGTGCGAAAATTAAAGT+TGG + chr8_4:11255428-11255447 Msa1313340:intron 30.0%
!! TACTGAGATTTTGCTTTTGT+TGG - chr8_4:11255622-11255641 None:intergenic 30.0%
AACAAAAGCAAAATCTCAGT+AGG + chr8_4:11255621-11255640 Msa1313340:intron 30.0%
! AGAATGCTAGTCTAGTATAA+TGG + chr8_4:11255765-11255784 Msa1313340:intron 30.0%
ACAACACTTTGTACTAAACA+GGG - chr8_4:11255879-11255898 None:intergenic 30.0%
AACAACACTTTGTACTAAAC+AGG - chr8_4:11255880-11255899 None:intergenic 30.0%
!! TACAAAGTGTTGTTAAGTTG+TGG + chr8_4:11255886-11255905 Msa1313340:intron 30.0%
! TTGATGACACATCAAGAAAT+AGG + chr8_4:11255956-11255975 Msa1313340:intron 30.0%
!!! TTTTTTTGTCGAAGCTGTTT+TGG + chr8_4:11256044-11256063 Msa1313340:intron 30.0%
AAGGGGAAAAAAAAAAAACG+GGG - chr8_4:11256337-11256356 None:intergenic 30.0%
AACAATTGACACAGAAAAAG+GGG - chr8_4:11256354-11256373 None:intergenic 30.0%
CTAACAATTGACACAGAAAA+AGG - chr8_4:11256356-11256375 None:intergenic 30.0%
! TTTTCTGTGTCAATTGTTAG+AGG + chr8_4:11256356-11256375 Msa1313340:intron 30.0%
TTTCTGTGTCAATTGTTAGA+GGG + chr8_4:11256357-11256376 Msa1313340:intron 30.0%
!!! ATGCCATGATCATTTTTTGT+TGG + chr8_4:11256684-11256703 Msa1313340:intron 30.0%
ACACCAACAAAAAATGATCA+TGG - chr8_4:11256690-11256709 None:intergenic 30.0%
! ATTGTTTGCTTACATTTTGC+AGG + chr8_4:11256739-11256758 Msa1313340:intron 30.0%
TCCTTTCTTACTATTAGTTG+TGG + chr8_4:11256766-11256785 Msa1313340:CDS 30.0%
GTTGCATGTATATCAAATCC+GGG + chr8_4:11251410-11251429 Msa1313340:CDS 35.0%
AGATATAAAACACCCTAAGG+AGG + chr8_4:11251535-11251554 Msa1313340:CDS 35.0%
GAGGATGAAAGATTCGATAT+AGG + chr8_4:11251554-11251573 Msa1313340:CDS 35.0%
GGATGAAAGATTCGATATAG+GGG + chr8_4:11251556-11251575 Msa1313340:CDS 35.0%
GATGAAAGATTCGATATAGG+GGG + chr8_4:11251557-11251576 Msa1313340:CDS 35.0%
!!! GGTATTGTTTTTGACAGGTA+TGG + chr8_4:11251646-11251665 Msa1313340:intron 35.0%
AAAGAATTAAGCTAAGGGAC+GGG - chr8_4:11251781-11251800 None:intergenic 35.0%
TCTGTTTATTCACAAAGGTC+TGG + chr8_4:11251900-11251919 Msa1313340:intron 35.0%
CTGTTTATTCACAAAGGTCT+GGG + chr8_4:11251901-11251920 Msa1313340:intron 35.0%
!! AGGATAAATTTTAGGAAGGG+TGG + chr8_4:11252000-11252019 Msa1313340:intron 35.0%
! ATGAAGATGGTGATGAATTC+TGG + chr8_4:11252045-11252064 Msa1313340:intron 35.0%
ATGAATTTGTATACAGGGCA+TGG + chr8_4:11252162-11252181 Msa1313340:intron 35.0%
ACCATAGATACGAGAATCAT+CGG - chr8_4:11252247-11252266 None:intergenic 35.0%
! ACGATATGACTTGTAGAGTT+GGG - chr8_4:11252477-11252496 None:intergenic 35.0%
AACAATCTTCTATAGGTGAG+AGG + chr8_4:11252547-11252566 Msa1313340:CDS 35.0%
! GCTTTCTTTTTATGAACCTC+GGG - chr8_4:11252602-11252621 None:intergenic 35.0%
! CGCTTTCTTTTTATGAACCT+CGG - chr8_4:11252603-11252622 None:intergenic 35.0%
AGGTTCATAAAAAGAAAGCG+TGG + chr8_4:11252603-11252622 Msa1313340:CDS 35.0%
! TGAAGCACTTACTATGCAAT+TGG - chr8_4:11252840-11252859 None:intergenic 35.0%
! ATAGTGCTACTATCTGTCAT+TGG - chr8_4:11253463-11253482 None:intergenic 35.0%
!! TTGTACTAAATAGGGTATCG+CGG - chr8_4:11253519-11253538 None:intergenic 35.0%
GATGACTGATGTGAAATATC+GGG + chr8_4:11253661-11253680 Msa1313340:intron 35.0%
!! TTTGGTGTTGAAGGTATAAC+AGG - chr8_4:11253796-11253815 None:intergenic 35.0%
AAAGATAGAGGGTTGAGATT+TGG - chr8_4:11253931-11253950 None:intergenic 35.0%
AATAGCGATATTGGATTTGG+TGG - chr8_4:11254087-11254106 None:intergenic 35.0%
AAAAGGGGATATGTCTACAT+GGG - chr8_4:11254163-11254182 None:intergenic 35.0%
GTCATTCAGATATGCAATTG+TGG - chr8_4:11254322-11254341 None:intergenic 35.0%
!!! GCTTTTTTCTACAAATTCCG+TGG + chr8_4:11254422-11254441 Msa1313340:intron 35.0%
AGCAACCATTAACATGGAAT+TGG - chr8_4:11254457-11254476 None:intergenic 35.0%
!! GGCAAAACATCTTTTAGGAA+TGG + chr8_4:11254563-11254582 Msa1313340:intron 35.0%
TCCTGACTCATATATATGTC+AGG + chr8_4:11254750-11254769 Msa1313340:intron 35.0%
TCCTGACATATATATGAGTC+AGG - chr8_4:11254754-11254773 None:intergenic 35.0%
ACAAAGTTTCGAGGAACTAA+TGG - chr8_4:11254962-11254981 None:intergenic 35.0%
CTGAGAATAACAAAGTTTCG+AGG - chr8_4:11254971-11254990 None:intergenic 35.0%
AGAATATTGAAGAGTGGATG+TGG - chr8_4:11254994-11255013 None:intergenic 35.0%
! ATCTTTTCCCATTGAAGGAA+AGG + chr8_4:11255144-11255163 Msa1313340:intron 35.0%
TTCACTACCTTTCCTTCAAT+GGG - chr8_4:11255154-11255173 None:intergenic 35.0%
ATTCACTACCTTTCCTTCAA+TGG - chr8_4:11255155-11255174 None:intergenic 35.0%
CTAAATTCTATTCGCGTTTC+TGG - chr8_4:11255278-11255297 None:intergenic 35.0%
TGTTTATGATAGAGGATTGG+AGG - chr8_4:11255309-11255328 None:intergenic 35.0%
!! AAATTTGGTGTCAACGTCAA+CGG + chr8_4:11255491-11255510 Msa1313340:intron 35.0%
AAAAGCAAAATCTCAGTAGG+TGG + chr8_4:11255624-11255643 Msa1313340:intron 35.0%
ATAGTAGCACTATAGTGTAG+CGG + chr8_4:11255822-11255841 Msa1313340:intron 35.0%
CAATCACAGAAAAAAACGGT+CGG - chr8_4:11255939-11255958 None:intergenic 35.0%
GATGACTGATGCAAAATATC+AGG + chr8_4:11256009-11256028 Msa1313340:intron 35.0%
TATCTTCAACACCAAATTGC+TGG + chr8_4:11256150-11256169 Msa1313340:intron 35.0%
AGGGGAAAAAAAAAAAACGG+GGG - chr8_4:11256336-11256355 None:intergenic 35.0%
! TGTCAATTGTTAGAGGGTAT+CGG + chr8_4:11256363-11256382 Msa1313340:intron 35.0%
TAGGTGGTTTCTACTGTATA+GGG + chr8_4:11256420-11256439 Msa1313340:intron 35.0%
CCATCAATCTAAATGTATGC+AGG - chr8_4:11256628-11256647 None:intergenic 35.0%
CCTGCATACATTTAGATTGA+TGG + chr8_4:11256625-11256644 Msa1313340:intron 35.0%
GCCACAACTAATAGTAAGAA+AGG - chr8_4:11256770-11256789 None:intergenic 35.0%
GTAAAACTGAGAGTTGCATT+AGG + chr8_4:11256791-11256810 Msa1313340:CDS 35.0%
! AGCATCGTTTGCTAAAATAG+TGG + chr8_4:11256835-11256854 Msa1313340:CDS 35.0%
! GCATCGTTTGCTAAAATAGT+GGG + chr8_4:11256836-11256855 Msa1313340:CDS 35.0%
CGAATCTTTCATCCTCCTTA+GGG - chr8_4:11251550-11251569 None:intergenic 40.0%
TCGAATCTTTCATCCTCCTT+AGG - chr8_4:11251551-11251570 None:intergenic 40.0%
!!! GGTGTGGTATTGTTTTTGAC+AGG + chr8_4:11251641-11251660 Msa1313340:CDS 40.0%
AATTTGTATACAGGGCATGG+AGG + chr8_4:11252165-11252184 Msa1313340:intron 40.0%
ACCGATGATTCTCGTATCTA+TGG + chr8_4:11252243-11252262 Msa1313340:CDS 40.0%
! GACGATATGACTTGTAGAGT+TGG - chr8_4:11252478-11252497 None:intergenic 40.0%
GACGCTATCATTACTGCATT+AGG - chr8_4:11252516-11252535 None:intergenic 40.0%
! AGAAGATTGTTTGTTGCAGC+AGG - chr8_4:11252538-11252557 None:intergenic 40.0%
TCTATAGGTGAGAGGTTCAA+TGG + chr8_4:11252555-11252574 Msa1313340:CDS 40.0%
TTTATGAACCTCGGGAACAA+TGG - chr8_4:11252594-11252613 None:intergenic 40.0%
! TTCTCCTTTTAACAGCCTTG+AGG - chr8_4:11252650-11252669 None:intergenic 40.0%
!! ACAAAAAAGTGCCGGTTGTT+GGG - chr8_4:11252784-11252803 None:intergenic 40.0%
!! TACAAAAAAGTGCCGGTTGT+TGG - chr8_4:11252785-11252804 None:intergenic 40.0%
CAAACTCCATTTGCAATTCC+AGG + chr8_4:11252974-11252993 Msa1313340:intron 40.0%
GTCAAACCTGGAATTGCAAA+TGG - chr8_4:11252983-11253002 None:intergenic 40.0%
!! CAGACAATTTTGATGGCAAG+TGG - chr8_4:11253059-11253078 None:intergenic 40.0%
ATCATATGTGTGGCAGAATG+GGG - chr8_4:11253357-11253376 None:intergenic 40.0%
CATCATATGTGTGGCAGAAT+GGG - chr8_4:11253358-11253377 None:intergenic 40.0%
GCATAGTTGCATCATATGTG+TGG - chr8_4:11253367-11253386 None:intergenic 40.0%
TGCAACTATGCAAATCTTGC+AGG + chr8_4:11253376-11253395 Msa1313340:intron 40.0%
GCAACTATGCAAATCTTGCA+GGG + chr8_4:11253377-11253396 Msa1313340:intron 40.0%
TGCTACTATCTGTCATTGGA+GGG - chr8_4:11253459-11253478 None:intergenic 40.0%
ATAGTAGCACTATAGCGTAG+TGG + chr8_4:11253470-11253489 Msa1313340:intron 40.0%
GGTTCAAATTCCACTAGCAT+CGG - chr8_4:11253565-11253584 None:intergenic 40.0%
ACTATCGTAACTTGGACTCT+TGG - chr8_4:11253756-11253775 None:intergenic 40.0%
TACCTTCAACACCAAATTGC+TGG + chr8_4:11253800-11253819 Msa1313340:CDS 40.0%
ACCTTCAACACCAAATTGCT+GGG + chr8_4:11253801-11253820 Msa1313340:CDS 40.0%
!! GGTTTTGTGATCCATATGAG+AGG - chr8_4:11254142-11254161 None:intergenic 40.0%
CAAAAGGGGATATGTCTACA+TGG - chr8_4:11254164-11254183 None:intergenic 40.0%
GGAATTGGATATGTTGTCCA+CGG - chr8_4:11254442-11254461 None:intergenic 40.0%
CTACGTAGCAACCATTAACA+TGG - chr8_4:11254463-11254482 None:intergenic 40.0%
GAGATTCGTGAACAACAGAT+TGG + chr8_4:11254542-11254561 Msa1313340:intron 40.0%
!! TGGTCATGATTTGGTGTCAA+CGG + chr8_4:11254692-11254711 Msa1313340:intron 40.0%
ATTGGTGTAATTAGGCTACC+TGG + chr8_4:11255334-11255353 Msa1313340:intron 40.0%
AACACAGGCAATTGAGGTTT+CGG + chr8_4:11255392-11255411 Msa1313340:intron 40.0%
! CTGTCAGTGTTTTCCTATGA+CGG + chr8_4:11255799-11255818 Msa1313340:intron 40.0%
! ATAGTGCTACTATCCGTCAT+AGG - chr8_4:11255815-11255834 None:intergenic 40.0%
CGGTCGGTTAAAATTTCACT+AGG - chr8_4:11255923-11255942 None:intergenic 40.0%
AAAGCAACTTCGACTCTAAG+TGG - chr8_4:11256096-11256115 None:intergenic 40.0%
ACTTAGAGTCGAAGTTGCTT+TGG + chr8_4:11256095-11256114 Msa1313340:intron 40.0%
TGGAGTCTAGGTACATTTGT+TGG + chr8_4:11256170-11256189 Msa1313340:intron 40.0%
AAAAAAAAAAAACGGGGGGG+GGG - chr8_4:11256331-11256350 None:intergenic 40.0%
GAAAAAAAAAAAACGGGGGG+GGG - chr8_4:11256332-11256351 None:intergenic 40.0%
GGAAAAAAAAAAAACGGGGG+GGG - chr8_4:11256333-11256352 None:intergenic 40.0%
GGGAAAAAAAAAAAACGGGG+GGG - chr8_4:11256334-11256353 None:intergenic 40.0%
GGGGAAAAAAAAAAAACGGG+GGG - chr8_4:11256335-11256354 None:intergenic 40.0%
!! AGCTTTGGATCTTCTTCAGT+AGG + chr8_4:11256401-11256420 Msa1313340:intron 40.0%
TTTGGATCTTCTTCAGTAGG+TGG + chr8_4:11256404-11256423 Msa1313340:intron 40.0%
GTAGGTGGTTTCTACTGTAT+AGG + chr8_4:11256419-11256438 Msa1313340:intron 40.0%
!! TGATGGTGTTGTTGAGTTGA+TGG + chr8_4:11256642-11256661 Msa1313340:intron 40.0%
!! TGTTGAGTTGATGGAAACCA+TGG + chr8_4:11256651-11256670 Msa1313340:intron 40.0%
CCTTCTATCTTTCGGTTCAA+CGG - chr8_4:11256914-11256933 None:intergenic 40.0%
CGTTGAACCGAAAGATAGAA+GGG + chr8_4:11256912-11256931 Msa1313340:CDS 40.0%
GGCATATCCCTTCTATCTTT+CGG - chr8_4:11256922-11256941 None:intergenic 40.0%
TAAGCAGACGTGATACAACC+TGG - chr8_4:11251452-11251471 None:intergenic 45.0%
AAACAATACCACACCATCCC+CGG - chr8_4:11251636-11251655 None:intergenic 45.0%
!! GGGGATTTTGCTGTGTTGTA+TGG + chr8_4:11251820-11251839 Msa1313340:intron 45.0%
TGCTGTGTTGTATGGTGTGA+TGG + chr8_4:11251828-11251847 Msa1313340:intron 45.0%
TATGGTGTGATGGTCACTAG+TGG + chr8_4:11251838-11251857 Msa1313340:intron 45.0%
! GTATTGTCTCATGGTCTTGC+TGG + chr8_4:11251868-11251887 Msa1313340:intron 45.0%
!! TCTCATGGTCTTGCTGGTTT+CGG + chr8_4:11251874-11251893 Msa1313340:intron 45.0%
! CGGTGTTGGAAAGATGAAGA+TGG + chr8_4:11252032-11252051 Msa1313340:intron 45.0%
TATCACATCTCCTTTGCTGC+AGG + chr8_4:11252336-11252355 Msa1313340:intron 45.0%
TCCTGCTAACCTCTCTTGTA+CGG + chr8_4:11252389-11252408 Msa1313340:CDS 45.0%
! GGGACCAATTTGTTCCTTAG+CGG - chr8_4:11252457-11252476 None:intergenic 45.0%
! GGTGAGAGGTTCAATGGATT+TGG + chr8_4:11252561-11252580 Msa1313340:CDS 45.0%
GATATCATCCATTGTTCCCG+AGG + chr8_4:11252583-11252602 Msa1313340:CDS 45.0%
GAGGAGAGATTCCACAAACA+AGG - chr8_4:11252631-11252650 None:intergenic 45.0%
GTTTGTGGAATCTCTCCTCA+AGG + chr8_4:11252632-11252651 Msa1313340:CDS 45.0%
CTCTCCTCAAGGCTGTTAAA+AGG + chr8_4:11252643-11252662 Msa1313340:CDS 45.0%
CTTTCTCTTCTTCCCTTGGT+GGG - chr8_4:11252685-11252704 None:intergenic 45.0%
ACTTTCTCTTCTTCCCTTGG+TGG - chr8_4:11252686-11252705 None:intergenic 45.0%
TGCACTTTCTCTTCTTCCCT+TGG - chr8_4:11252689-11252708 None:intergenic 45.0%
AGTGCAGAGTCACCAACAAA+AGG + chr8_4:11252703-11252722 Msa1313340:CDS 45.0%
CAGAGTCACCAACAAAAGGT+TGG + chr8_4:11252707-11252726 Msa1313340:CDS 45.0%
! GTGTCGCTACAAAAAAGTGC+CGG - chr8_4:11252792-11252811 None:intergenic 45.0%
TAGAAAGTCCAGCCTTGCTT+GGG - chr8_4:11252814-11252833 None:intergenic 45.0%
ACACATTCAAACACGCTTCG+CGG + chr8_4:11252861-11252880 Msa1313340:intron 45.0%
! GGAAGCACATGCCAAACTTA+CGG - chr8_4:11253317-11253336 None:intergenic 45.0%
GGGGGAGAAAAAGACTAATG+TGG - chr8_4:11253338-11253357 None:intergenic 45.0%
TCATATGTGTGGCAGAATGG+GGG - chr8_4:11253356-11253375 None:intergenic 45.0%
GCATCATATGTGTGGCAGAA+TGG - chr8_4:11253359-11253378 None:intergenic 45.0%
! GTGCTACTATCTGTCATTGG+AGG - chr8_4:11253460-11253479 None:intergenic 45.0%
CCTTCAACACCAAATTGCTG+GGG + chr8_4:11253802-11253821 Msa1313340:CDS 45.0%
!! GGGTTGAGATTTGGTGTCAA+CGG - chr8_4:11253922-11253941 None:intergenic 45.0%
!! TCTTTTAGGAATGGGGGAAG+AGG + chr8_4:11254572-11254591 Msa1313340:intron 45.0%
AATGAAGGAGTGATCACGTG+AGG + chr8_4:11254625-11254644 Msa1313340:intron 45.0%
TCAATGAATCCGTTGACACC+TGG + chr8_4:11254717-11254736 Msa1313340:intron 45.0%
GCATAGTTGCATCATATGCG+CGG - chr8_4:11255722-11255741 None:intergenic 45.0%
TGCAACTATGCAAACCTTGC+AGG + chr8_4:11255731-11255750 Msa1313340:intron 45.0%
TATGCAAACCTTGCAGGACA+AGG + chr8_4:11255737-11255756 Msa1313340:intron 45.0%
ATGCAAACCTTGCAGGACAA+GGG + chr8_4:11255738-11255757 Msa1313340:intron 45.0%
! TCTAAAACCCTTGTCCTGCA+AGG - chr8_4:11255748-11255767 None:intergenic 45.0%
GACTCGTAGACAGTTGCATA+TGG - chr8_4:11256074-11256093 None:intergenic 45.0%
ACACCAAATTGCTGGAGTCT+AGG + chr8_4:11256158-11256177 Msa1313340:intron 45.0%
GTACCTAGACTCCAGCAATT+TGG - chr8_4:11256164-11256183 None:intergenic 45.0%
AAAAAAAAAAACGGGGGGGG+GGG - chr8_4:11256330-11256349 None:intergenic 45.0%
ATGGCATGCTACAACAACCA+TGG - chr8_4:11256671-11256690 None:intergenic 45.0%
GCATTAGGAGACATCGTTGT+TGG + chr8_4:11256806-11256825 Msa1313340:CDS 45.0%
TTAGGAGACATCGTTGTTGG+AGG + chr8_4:11256809-11256828 Msa1313340:CDS 45.0%
CCGTTGAACCGAAAGATAGA+AGG + chr8_4:11256911-11256930 Msa1313340:CDS 45.0%
!!! TTACAAATATATATAATTTT+TGG + chr8_4:11256573-11256592 Msa1313340:intron 5.0%
!!! TACAAATATATATAATTTTT+GGG + chr8_4:11256574-11256593 Msa1313340:intron 5.0%
ATACAACCTGGACGTGCATC+AGG - chr8_4:11251440-11251459 None:intergenic 50.0%
CGATATAGGGGGAACTTCTG+AGG + chr8_4:11251568-11251587 Msa1313340:CDS 50.0%
ATGGTCTCCGAATCTGTACC+CGG + chr8_4:11251614-11251633 Msa1313340:CDS 50.0%
AACAATACCACACCATCCCC+GGG - chr8_4:11251635-11251654 None:intergenic 50.0%
GTGTGATGGTCACTAGTGGT+GGG + chr8_4:11251842-11251861 Msa1313340:intron 50.0%
! GGTGGGAGTGTATTGTCTCA+TGG + chr8_4:11251859-11251878 Msa1313340:intron 50.0%
AGGAAGGGTGGTGAAGATGA+CGG + chr8_4:11252012-11252031 Msa1313340:intron 50.0%
AAGGTCTGAACCTGCAGCAA+AGG - chr8_4:11252349-11252368 None:intergenic 50.0%
ACCGTACAAGAGAGGTTAGC+AGG - chr8_4:11252393-11252412 None:intergenic 50.0%
CCACAATCACCGTACAAGAG+AGG - chr8_4:11252401-11252420 None:intergenic 50.0%
CCTCTCTTGTACGGTGATTG+TGG + chr8_4:11252398-11252417 Msa1313340:CDS 50.0%
! AAAGCGTGGCACCTTGTTTG+TGG + chr8_4:11252617-11252636 Msa1313340:CDS 50.0%
! CCTTCGCACCAACCTTTTGT+TGG - chr8_4:11252718-11252737 None:intergenic 50.0%
!! CCAACAAAAGGTTGGTGCGA+AGG + chr8_4:11252715-11252734 Msa1313340:CDS 50.0%
! GCGAAGGATTGCTAGGCTTT+TGG + chr8_4:11252731-11252750 Msa1313340:CDS 50.0%
AGATGGGGAAACCCAACAAC+CGG + chr8_4:11252770-11252789 Msa1313340:CDS 50.0%
TTTGTAGCGACACCCAAGCA+AGG + chr8_4:11252799-11252818 Msa1313340:CDS 50.0%
CTAGAAAGTCCAGCCTTGCT+TGG - chr8_4:11252815-11252834 None:intergenic 50.0%
CAAGCAAGGCTGGACTTTCT+AGG + chr8_4:11252813-11252832 Msa1313340:CDS 50.0%
TGTGGAATCACCGATGCTAG+TGG + chr8_4:11253552-11253571 Msa1313340:intron 50.0%
!! CCCCAGCAATTTGGTGTTGA+AGG - chr8_4:11253805-11253824 None:intergenic 50.0%
AACACCAAATTGCTGGGGTC+TGG + chr8_4:11253807-11253826 Msa1313340:CDS 50.0%
ACACCAAATTGCTGGGGTCT+GGG + chr8_4:11253808-11253827 Msa1313340:CDS 50.0%
TCAACGAATCCGTTGACACC+TGG - chr8_4:11254787-11254806 None:intergenic 50.0%
AGGCTACCTGGATCCATTGA+TGG + chr8_4:11255346-11255365 Msa1313340:intron 50.0%
GGCTACCTGGATCCATTGAT+GGG + chr8_4:11255347-11255366 Msa1313340:intron 50.0%
GCTACCTGGATCCATTGATG+GGG + chr8_4:11255348-11255367 Msa1313340:intron 50.0%
TCTCGTTGCTTCCCCATCAA+TGG - chr8_4:11255362-11255381 None:intergenic 50.0%
GCGATGAACACAGGCAATTG+AGG + chr8_4:11255386-11255405 Msa1313340:intron 50.0%
AAAAAAAAAACGGGGGGGGG+GGG - chr8_4:11256329-11256348 None:intergenic 50.0%
TGGTCTCCGAATCTGTACCC+GGG + chr8_4:11251615-11251634 Msa1313340:CDS 55.0%
ACCATCCCCGGGTACAGATT+CGG - chr8_4:11251624-11251643 None:intergenic 55.0%
GGTGTGATGGTCACTAGTGG+TGG + chr8_4:11251841-11251860 Msa1313340:intron 55.0%
! GGTGGTGAAGATGACGGTGT+TGG + chr8_4:11252018-11252037 Msa1313340:intron 55.0%
TACAGGGCATGGAGGAACTG+TGG + chr8_4:11252173-11252192 Msa1313340:intron 55.0%
GGCGCCGCTAAGGAACAAAT+TGG + chr8_4:11252450-11252469 Msa1313340:CDS 55.0%
AAGCGTAGAGTCACCCACCA+AGG + chr8_4:11252669-11252688 Msa1313340:CDS 55.0%
AGCGTAGAGTCACCCACCAA+GGG + chr8_4:11252670-11252689 Msa1313340:CDS 55.0%
! GGTTGGTGCGAAGGATTGCT+AGG + chr8_4:11252724-11252743 Msa1313340:CDS 55.0%
GTACCCAGACCCCAGCAATT+TGG - chr8_4:11253814-11253833 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG - chr8_4:11254775-11254794 None:intergenic 55.0%
! CCGTTGACACCTGGTGTCAA+CGG + chr8_4:11254726-11254745 Msa1313340:intron 55.0%
AGTCAGGATCCGTTGACACC+AGG - chr8_4:11253910-11253929 None:intergenic 55.0%
TGTCAGGATCCGTTGACACC+AGG + chr8_4:11254766-11254785 Msa1313340:intron 55.0%
! CCGTTGACACCTGGTGTCAA+CGG - chr8_4:11254726-11254745 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG + chr8_4:11254775-11254794 Msa1313340:intron 55.0%
GCTTCCCCATCAATGGATCC+AGG - chr8_4:11255355-11255374 None:intergenic 55.0%
ATCATATGCGCGGCAGAGTG+GGG - chr8_4:11255712-11255731 None:intergenic 55.0%
CATCATATGCGCGGCAGAGT+GGG - chr8_4:11255713-11255732 None:intergenic 55.0%
AAAAAAAAACGGGGGGGGGG+GGG - chr8_4:11256328-11256347 None:intergenic 55.0%
GGTCTCCGAATCTGTACCCG+GGG + chr8_4:11251616-11251635 Msa1313340:CDS 60.0%
TCCGAATCTGTACCCGGGGA+TGG + chr8_4:11251620-11251639 Msa1313340:CDS 60.0%
ATCTGTACCCGGGGATGGTG+TGG + chr8_4:11251625-11251644 Msa1313340:CDS 60.0%
AGGGCATGGAGGAACTGTGG+AGG + chr8_4:11252176-11252195 Msa1313340:intron 60.0%
GCATGGAGGAACTGTGGAGG+AGG + chr8_4:11252179-11252198 Msa1313340:CDS 60.0%
GTGGACGCTTGTTTCAGCGC+CGG + chr8_4:11252417-11252436 Msa1313340:CDS 60.0%
!!! TTCAGCGCCGGCCTTTTCGA+AGG + chr8_4:11252429-11252448 Msa1313340:CDS 60.0%
CCTTAGCGGCGCCTTCGAAA+AGG - chr8_4:11252443-11252462 None:intergenic 60.0%
!!! CCTTTTCGAAGGCGCCGCTA+AGG + chr8_4:11252440-11252459 Msa1313340:CDS 60.0%
TAGCGACACCCAAGCAAGGC+TGG + chr8_4:11252803-11252822 Msa1313340:CDS 60.0%
! CGAGAGAGCGCGATGAACAC+AGG + chr8_4:11255377-11255396 Msa1313340:intron 60.0%
TCATATGCGCGGCAGAGTGG+GGG - chr8_4:11255711-11255730 None:intergenic 60.0%
GCATCATATGCGCGGCAGAG+TGG - chr8_4:11255714-11255733 None:intergenic 60.0%
AAAAAAAACGGGGGGGGGGG+GGG - chr8_4:11256327-11256346 None:intergenic 60.0%
GTGGGTGCAGTGAAAGCTGC+AGG + chr8_4:11256854-11256873 Msa1313340:CDS 60.0%
GGTGCAGTGAAAGCTGCAGG+TGG + chr8_4:11256857-11256876 Msa1313340:CDS 60.0%
GGACGTGCATCAGGAGCTCC+CGG - chr8_4:11251431-11251450 None:intergenic 65.0%
GGAGCTCCTGATGCACGTCC+AGG + chr8_4:11251431-11251450 Msa1313340:CDS 65.0%
AGCGGCGCCTTCGAAAAGGC+CGG - chr8_4:11252439-11252458 None:intergenic 65.0%
AAAAAAACGGGGGGGGGGGG+GGG - chr8_4:11256326-11256345 None:intergenic 65.0%
TATGCGCGGCAGAGTGGGGG+AGG - chr8_4:11255708-11255727 None:intergenic 70.0%
AAAAAACGGGGGGGGGGGGG+GGG - chr8_4:11256325-11256344 None:intergenic 70.0%
AAAAACGGGGGGGGGGGGGG+GGG - chr8_4:11256324-11256343 None:intergenic 75.0%
! AAAACGGGGGGGGGGGGGGG+GGG - chr8_4:11256323-11256342 None:intergenic 80.0%
! AAACGGGGGGGGGGGGGGGG+GGG - chr8_4:11256322-11256341 None:intergenic 85.0%
! AACGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256321-11256340 None:intergenic 90.0%
! ACGGGGGGGGGGGGGGGGGG+GGG - chr8_4:11256320-11256339 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 11251392 11256949 11251392 ID=Msa1313340;Name=Msa1313340
chr8_4 mRNA 11251392 11256949 11251392 ID=Msa1313340-mRNA-1;Parent=Msa1313340;Name=Msa1313340-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.2|1|1|5|0|383
chr8_4 exon 11251392 11251662 11251392 ID=Msa1313340-mRNA-1:exon:4195;Parent=Msa1313340-mRNA-1
chr8_4 exon 11252178 11252264 11252178 ID=Msa1313340-mRNA-1:exon:4196;Parent=Msa1313340-mRNA-1
chr8_4 exon 11252358 11252847 11252358 ID=Msa1313340-mRNA-1:exon:4197;Parent=Msa1313340-mRNA-1
chr8_4 exon 11253715 11253829 11253715 ID=Msa1313340-mRNA-1:exon:4198;Parent=Msa1313340-mRNA-1
chr8_4 exon 11256761 11256949 11256761 ID=Msa1313340-mRNA-1:exon:4199;Parent=Msa1313340-mRNA-1
chr8_4 CDS 11251392 11251662 11251392 ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1
chr8_4 CDS 11252178 11252264 11252178 ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1
chr8_4 CDS 11252358 11252847 11252358 ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1
chr8_4 CDS 11253715 11253829 11253715 ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1
chr8_4 CDS 11256761 11256949 11256761 ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1
Gene Sequence

>Msa1313340

ATGACACAAAGAGCTGCAGTTGCATGTATATCAAATCCGGGAGCTCCTGATGCACGTCCAGGTTGTATCACGTCTGCTTACAAGATTCGAAAACTTTTGATCAAAAGATATGGGTTTCGCCGCAAACATATCAGCTTAATCTTAGATATAAAACACCCTAAGGAGGATGAAAGATTCGATATAGGGGGAACTTCTGAGGAGATAGAACTAAAGCTAAAAGATATGGTCTCCGAATCTGTACCCGGGGATGGTGTGGTATTGTTTTTGACAGGGCATGGAGGAACTGTGGAGGAGGAAAACAGAGAAATGAATTCAAGTGATTACTACTTGGAGTGTACCGATGATTCTCGTATCTATGGTTCAGACCTTCAAAAAATGATAAGAACAATTCCTGCTAACCTCTCTTGTACGGTGATTGTGGACGCTTGTTTCAGCGCCGGCCTTTTCGAAGGCGCCGCTAAGGAACAAATTGGTCCCAACTCTACAAGTCATATCGTCAATCACACAATTCATCCTAATGCAGTAATGATAGCGTCCTGCTGCAACAAACAATCTTCTATAGGTGAGAGGTTCAATGGATTTGGATATCATCCATTGTTCCCGAGGTTCATAAAAAGAAAGCGTGGCACCTTGTTTGTGGAATCTCTCCTCAAGGCTGTTAAAAGGAGAAAGCGTAGAGTCACCCACCAAGGGAAGAAGAGAAAGTGCAGAGTCACCAACAAAAGGTTGGTGCGAAGGATTGCTAGGCTTTTGGAAAAAATATTGGAAAAAGATGGGGAAACCCAACAACCGGCACTTTTTTGTAGCGACACCCAAGCAAGGCTGGACTTTCTAGGTCCAATTGCATACTGTTTTGGCTTACAATATGCAACTGTCTACGAGTTCACCAAGAGTCCAAGTTACGATAGTTGTAATCAGAAACTGATCCTGTTATACCTTCAACACCAAATTGCTGGGGTCTGGGTTGTTCCTTTCTTACTATTAGTTGTGGCAGTAAAACTGAGAGTTGCATTAGGAGACATCGTTGTTGGAGGCATAGCATCGTTTGCTAAAATAGTGGGTGCAGTGAAAGCTGCAGGTGGCATAAAGATAACAATTTTTTTGAAAGTTTATCCGTTGAACCGAAAGATAGAAGGGATATGCCAATTATAG

Protein sequence

>Msa1313340

MTQRAAVACISNPGAPDARPGCITSAYKIRKLLIKRYGFRRKHISLILDIKHPKEDERFDIGGTSEEIELKLKDMVSESVPGDGVVLFLTGHGGTVEEENREMNSSDYYLECTDDSRIYGSDLQKMIRTIPANLSCTVIVDACFSAGLFEGAAKEQIGPNSTSHIVNHTIHPNAVMIASCCNKQSSIGERFNGFGYHPLFPRFIKRKRGTLFVESLLKAVKRRKRRVTHQGKKRKCRVTNKRLVRRIARLLEKILEKDGETQQPALFCSDTQARLDFLGPIAYCFGLQYATVYEFTKSPSYDSCNQKLILLYLQHQIAGVWVVPFLLLVVAVKLRVALGDIVVGGIASFAKIVGAVKAAGGIKITIFLKVYPLNRKIEGICQL*