Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313340 | XP_013442054.1 | 26.490 | 302 | 168 | 10 | 3 | 279 | 4 | 276 | 1.24e-18 | 96.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313340 | sp|Q6XPT5|MCA7_ARATH | 28.313 | 166 | 108 | 5 | 1 | 163 | 1 | 158 | 1.05e-14 | 78.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313340 | A0A072TET9 | 26.490 | 302 | 168 | 10 | 3 | 279 | 4 | 276 | 5.94e-19 | 96.7 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1232620 | Msa1313340 | 0.938196 | 1.003422e-98 | -8.615850e-47 |
Msa1232790 | Msa1313340 | 0.973433 | 2.023247e-136 | -8.615850e-47 |
Msa1313340 | Msa1313410 | 0.959952 | 5.177634e-118 | -8.615850e-47 |
Msa1178420 | Msa1313340 | 0.937483 | 3.219414e-98 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313340 | MtrunA17_Chr8g0356911 | 26.490 | 302 | 168 | 10 | 3 | 279 | 4 | 276 | 1.14e-22 | 96.7 |
Msa1313340 | MtrunA17_Chr2g0309701 | 28.085 | 235 | 145 | 9 | 1 | 223 | 4 | 226 | 4.23e-17 | 82.4 |
Msa1313340 | MtrunA17_Chr1g0175941 | 24.296 | 284 | 167 | 7 | 17 | 279 | 32 | 288 | 1.39e-16 | 81.6 |
Msa1313340 | MtrunA17_Chr8g0356311 | 28.659 | 164 | 106 | 4 | 1 | 161 | 1 | 156 | 3.51e-14 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313340 | AT1G79310.1 | 28.313 | 166 | 108 | 5 | 1 | 163 | 1 | 158 | 1.07e-15 | 78.6 |
Msa1313340 | AT1G79340.1 | 29.268 | 164 | 105 | 4 | 1 | 161 | 1 | 156 | 1.17e-14 | 75.5 |
Msa1313340 | AT1G79330.1 | 28.049 | 164 | 107 | 4 | 1 | 161 | 1 | 156 | 3.28e-14 | 73.9 |
Msa1313340 | AT1G79320.1 | 28.659 | 164 | 106 | 4 | 1 | 161 | 1 | 156 | 3.26e-13 | 70.9 |
Find 95 sgRNAs with CRISPR-Local
Find 406 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTACATATAAAACTATAAT+TGG | 0.235812 | 8_4:-11256940 | None:intergenic |
AGGATGAAAGATTCGATATA+GGG | 0.266282 | 8_4:+11251555 | Msa1313340:CDS |
GCGAAGGATTGCTAGGCTTT+TGG | 0.269483 | 8_4:+11252731 | Msa1313340:CDS |
GGTGAGAGGTTCAATGGATT+TGG | 0.295447 | 8_4:+11252561 | Msa1313340:CDS |
GGCATATCCCTTCTATCTTT+CGG | 0.298241 | 8_4:-11256919 | None:intergenic |
AACACCAAATTGCTGGGGTC+TGG | 0.319053 | 8_4:+11253807 | Msa1313340:CDS |
TGCACTTTCTCTTCTTCCCT+TGG | 0.325486 | 8_4:-11252686 | None:intergenic |
CTCTCCTCAAGGCTGTTAAA+AGG | 0.327370 | 8_4:+11252643 | Msa1313340:CDS |
GAGGATGAAAGATTCGATAT+AGG | 0.329537 | 8_4:+11251554 | Msa1313340:CDS |
TCGAATCTTTCATCCTCCTT+AGG | 0.336446 | 8_4:-11251548 | None:intergenic |
TTTGGTGTTGAAGGTATAAC+AGG | 0.346830 | 8_4:-11253793 | None:intergenic |
CAAGCAAGGCTGGACTTTCT+AGG | 0.356897 | 8_4:+11252813 | Msa1313340:CDS |
TACCTTCAACACCAAATTGC+TGG | 0.365882 | 8_4:+11253800 | Msa1313340:CDS |
ACCGATGATTCTCGTATCTA+TGG | 0.370000 | 8_4:+11252243 | Msa1313340:CDS |
GTACCCAGACCCCAGCAATT+TGG | 0.385219 | 8_4:-11253811 | None:intergenic |
CCCCAGCAATTTGGTGTTGA+AGG | 0.398356 | 8_4:-11253802 | None:intergenic |
AGAACTAAAGCTAAAAGATA+TGG | 0.401543 | 8_4:+11251595 | Msa1313340:CDS |
CCGTTGAACCGAAAGATAGA+AGG | 0.406043 | 8_4:+11256911 | Msa1313340:CDS |
CTTTCTCTTCTTCCCTTGGT+GGG | 0.408662 | 8_4:-11252682 | None:intergenic |
CGAATCTTTCATCCTCCTTA+GGG | 0.417346 | 8_4:-11251547 | None:intergenic |
AGAAGATTGTTTGTTGCAGC+AGG | 0.433609 | 8_4:-11252535 | None:intergenic |
TGAAGCACTTACTATGCAAT+TGG | 0.434616 | 8_4:-11252837 | None:intergenic |
GGCGCCGCTAAGGAACAAAT+TGG | 0.441061 | 8_4:+11252450 | Msa1313340:CDS |
AGTTGCATGTATATCAAATC+CGG | 0.442599 | 8_4:+11251409 | Msa1313340:CDS |
ACTTTCTCTTCTTCCCTTGG+TGG | 0.444200 | 8_4:-11252683 | None:intergenic |
ACCTTCAACACCAAATTGCT+GGG | 0.444412 | 8_4:+11253801 | Msa1313340:CDS |
GCATTAGGAGACATCGTTGT+TGG | 0.444879 | 8_4:+11256806 | Msa1313340:CDS |
GGAGCTCCTGATGCACGTCC+AGG | 0.447425 | 8_4:+11251431 | Msa1313340:CDS |
TCTATAGGTGAGAGGTTCAA+TGG | 0.447603 | 8_4:+11252555 | Msa1313340:CDS |
AAAGCGTGGCACCTTGTTTG+TGG | 0.447697 | 8_4:+11252617 | Msa1313340:CDS |
TGATTACAACTATCGTAACT+TGG | 0.460377 | 8_4:-11253761 | None:intergenic |
TGCAACAAACAATCTTCTAT+AGG | 0.464135 | 8_4:+11252540 | Msa1313340:CDS |
CTAGAAAGTCCAGCCTTGCT+TGG | 0.464626 | 8_4:-11252812 | None:intergenic |
AGATGGGGAAACCCAACAAC+CGG | 0.467871 | 8_4:+11252770 | Msa1313340:CDS |
ACCATCCCCGGGTACAGATT+CGG | 0.474186 | 8_4:-11251621 | None:intergenic |
ATACAACCTGGACGTGCATC+AGG | 0.474598 | 8_4:-11251437 | None:intergenic |
ACTATCGTAACTTGGACTCT+TGG | 0.477629 | 8_4:-11253753 | None:intergenic |
AAACAATACCACACCATCCC+CGG | 0.480304 | 8_4:-11251633 | None:intergenic |
AGCATCGTTTGCTAAAATAG+TGG | 0.480943 | 8_4:+11256835 | Msa1313340:CDS |
AGATTAAGCTGATATGTTTG+CGG | 0.481248 | 8_4:-11251511 | None:intergenic |
ACGATATGACTTGTAGAGTT+GGG | 0.481724 | 8_4:-11252474 | None:intergenic |
GACGCTATCATTACTGCATT+AGG | 0.482601 | 8_4:-11252513 | None:intergenic |
CCTTAGCGGCGCCTTCGAAA+AGG | 0.483351 | 8_4:-11252440 | None:intergenic |
GCCACAACTAATAGTAAGAA+AGG | 0.484068 | 8_4:-11256767 | None:intergenic |
GCATGGAGGAACTGTGGAGG+AGG | 0.484418 | 8_4:+11252179 | Msa1313340:CDS |
ACACCAAATTGCTGGGGTCT+GGG | 0.485035 | 8_4:+11253808 | Msa1313340:CDS |
CCTCTCTTGTACGGTGATTG+TGG | 0.490171 | 8_4:+11252398 | Msa1313340:CDS |
TAGCGACACCCAAGCAAGGC+TGG | 0.490789 | 8_4:+11252803 | Msa1313340:CDS |
GTAAAACTGAGAGTTGCATT+AGG | 0.497485 | 8_4:+11256791 | Msa1313340:CDS |
TAGAAAGTCCAGCCTTGCTT+GGG | 0.500080 | 8_4:-11252811 | None:intergenic |
CCTTCTATCTTTCGGTTCAA+CGG | 0.506078 | 8_4:-11256911 | None:intergenic |
GGGACCAATTTGTTCCTTAG+CGG | 0.507529 | 8_4:-11252454 | None:intergenic |
ATGGTCTCCGAATCTGTACC+CGG | 0.509670 | 8_4:+11251614 | Msa1313340:CDS |
GACGATATGACTTGTAGAGT+TGG | 0.510842 | 8_4:-11252475 | None:intergenic |
GAATTCAAGTGATTACTACT+TGG | 0.517361 | 8_4:+11252215 | Msa1313340:CDS |
GGATGAAAGATTCGATATAG+GGG | 0.520357 | 8_4:+11251556 | Msa1313340:CDS |
TCCGAATCTGTACCCGGGGA+TGG | 0.522031 | 8_4:+11251620 | Msa1313340:CDS |
ATCTGTACCCGGGGATGGTG+TGG | 0.522914 | 8_4:+11251625 | Msa1313340:CDS |
ACCGTACAAGAGAGGTTAGC+AGG | 0.524948 | 8_4:-11252390 | None:intergenic |
GTTTGTGGAATCTCTCCTCA+AGG | 0.525811 | 8_4:+11252632 | Msa1313340:CDS |
GGACGTGCATCAGGAGCTCC+CGG | 0.526298 | 8_4:-11251428 | None:intergenic |
GGTTGGTGCGAAGGATTGCT+AGG | 0.526445 | 8_4:+11252724 | Msa1313340:CDS |
TCCTTTCTTACTATTAGTTG+TGG | 0.529887 | 8_4:+11256766 | Msa1313340:CDS |
CTTAGATATAAAACACCCTA+AGG | 0.531876 | 8_4:+11251532 | Msa1313340:CDS |
AGTGCAGAGTCACCAACAAA+AGG | 0.536032 | 8_4:+11252703 | Msa1313340:CDS |
CGTTGAACCGAAAGATAGAA+GGG | 0.552190 | 8_4:+11256912 | Msa1313340:CDS |
AACAATACCACACCATCCCC+GGG | 0.553758 | 8_4:-11251632 | None:intergenic |
TTAGGAGACATCGTTGTTGG+AGG | 0.554237 | 8_4:+11256809 | Msa1313340:CDS |
AGCGGCGCCTTCGAAAAGGC+CGG | 0.554536 | 8_4:-11252436 | None:intergenic |
GTGGACGCTTGTTTCAGCGC+CGG | 0.555105 | 8_4:+11252417 | Msa1313340:CDS |
TTTATGAACCTCGGGAACAA+TGG | 0.557196 | 8_4:-11252591 | None:intergenic |
CCAACAAAAGGTTGGTGCGA+AGG | 0.564541 | 8_4:+11252715 | Msa1313340:CDS |
TCCTGCTAACCTCTCTTGTA+CGG | 0.566296 | 8_4:+11252389 | Msa1313340:CDS |
ACCATAGATACGAGAATCAT+CGG | 0.570225 | 8_4:-11252244 | None:intergenic |
GCATCGTTTGCTAAAATAGT+GGG | 0.572477 | 8_4:+11256836 | Msa1313340:CDS |
TAAGCAGACGTGATACAACC+TGG | 0.577441 | 8_4:-11251449 | None:intergenic |
AGCGTAGAGTCACCCACCAA+GGG | 0.591381 | 8_4:+11252670 | Msa1313340:CDS |
GTGGGTGCAGTGAAAGCTGC+AGG | 0.603311 | 8_4:+11256854 | Msa1313340:CDS |
CAGAGTCACCAACAAAAGGT+TGG | 0.603892 | 8_4:+11252707 | Msa1313340:CDS |
GTTGCATGTATATCAAATCC+GGG | 0.606506 | 8_4:+11251410 | Msa1313340:CDS |
GATATCATCCATTGTTCCCG+AGG | 0.609122 | 8_4:+11252583 | Msa1313340:CDS |
GATGAAAGATTCGATATAGG+GGG | 0.619536 | 8_4:+11251557 | Msa1313340:CDS |
TTTGTAGCGACACCCAAGCA+AGG | 0.619617 | 8_4:+11252799 | Msa1313340:CDS |
TGGTCTCCGAATCTGTACCC+GGG | 0.625032 | 8_4:+11251615 | Msa1313340:CDS |
AAGCGTAGAGTCACCCACCA+AGG | 0.632729 | 8_4:+11252669 | Msa1313340:CDS |
AACAATCTTCTATAGGTGAG+AGG | 0.633433 | 8_4:+11252547 | Msa1313340:CDS |
AGATATAAAACACCCTAAGG+AGG | 0.640748 | 8_4:+11251535 | Msa1313340:CDS |
TACAGGGCATGGAGGAACTG+TGG | 0.641620 | 8_4:+11252173 | Msa1313340:intron |
GAGGAGAGATTCCACAAACA+AGG | 0.648421 | 8_4:-11252628 | None:intergenic |
AGGGCATGGAGGAACTGTGG+AGG | 0.649291 | 8_4:+11252176 | Msa1313340:intron |
CCACAATCACCGTACAAGAG+AGG | 0.649619 | 8_4:-11252398 | None:intergenic |
GGTCTCCGAATCTGTACCCG+GGG | 0.650650 | 8_4:+11251616 | Msa1313340:CDS |
GGTGCAGTGAAAGCTGCAGG+TGG | 0.683049 | 8_4:+11256857 | Msa1313340:CDS |
CCTTCAACACCAAATTGCTG+GGG | 0.689798 | 8_4:+11253802 | Msa1313340:CDS |
AATTTGTATACAGGGCATGG+AGG | 0.718727 | 8_4:+11252165 | Msa1313340:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTAAAAGTTAATTAATAC+TGG | + | chr8_4:11253168-11253187 | Msa1313340:intron | 10.0% |
!! | TTAAAACTAATCATATTAAA+GGG | - | chr8_4:11254374-11254393 | None:intergenic | 10.0% |
!!! | TTTAAAACTAATCATATTAA+AGG | - | chr8_4:11254375-11254394 | None:intergenic | 10.0% |
!!! | AGTTTTAAAAACAATTATAT+TGG | + | chr8_4:11254386-11254405 | Msa1313340:intron | 10.0% |
!! | TATATATATATTTAGATTGA+TGG | + | chr8_4:11256535-11256554 | Msa1313340:intron | 10.0% |
!! | ATATATATATTTAGATTGAT+GGG | + | chr8_4:11256536-11256555 | Msa1313340:intron | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256290-11256309 | None:intergenic | 100.0% |
! | CGGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256319-11256338 | None:intergenic | 100.0% |
!!! | ATTCTTTTTTCGAAATTTTT+AGG | + | chr8_4:11251794-11251813 | Msa1313340:intron | 15.0% |
!!! | CATTTTTTAGGATAAATTTT+AGG | + | chr8_4:11251992-11252011 | Msa1313340:intron | 15.0% |
!! | AAAAAATATTGGAAAAAGAT+GGG | + | chr8_4:11252754-11252773 | Msa1313340:CDS | 15.0% |
!! | ATTGAAAAATAGAAGAAATT+AGG | - | chr8_4:11252892-11252911 | None:intergenic | 15.0% |
!!! | AAACTTTTTTTTTATCTTTC+AGG | + | chr8_4:11252940-11252959 | Msa1313340:intron | 15.0% |
!! | TATATATATATATATGAGTC+AGG | + | chr8_4:11253894-11253913 | Msa1313340:intron | 15.0% |
!!! | AATTCAATTGTTTTAAATCA+TGG | - | chr8_4:11254350-11254369 | None:intergenic | 15.0% |
!! | TTTAAAAACAATTATATTGG+AGG | + | chr8_4:11254389-11254408 | Msa1313340:intron | 15.0% |
!!! | CTTTGATTTTAAAAAATAGA+CGG | - | chr8_4:11254823-11254842 | None:intergenic | 15.0% |
!! | TATATATATATATATGAGTC+AGG | - | chr8_4:11253894-11253913 | None:intergenic | 15.0% |
!! | ATATATAATCTATTCTGTAA+TGG | + | chr8_4:11256201-11256220 | Msa1313340:intron | 15.0% |
!!! | ATTTTCAAACAAAATAACTT+CGG | - | chr8_4:11256721-11256740 | None:intergenic | 15.0% |
!!! | AAACTTTTGATCAAAAGATA+TGG | + | chr8_4:11251482-11251501 | Msa1313340:CDS | 20.0% |
!!! | AACTTTTGATCAAAAGATAT+GGG | + | chr8_4:11251483-11251502 | Msa1313340:CDS | 20.0% |
!!! | TTTTAGGATAAATTTTAGGA+AGG | + | chr8_4:11251996-11252015 | Msa1313340:intron | 20.0% |
!!! | TTTAGGATAAATTTTAGGAA+GGG | + | chr8_4:11251997-11252016 | Msa1313340:intron | 20.0% |
!! | AGATTTATGAATTTGTATAC+AGG | + | chr8_4:11252156-11252175 | Msa1313340:intron | 20.0% |
!! | GATTTATGAATTTGTATACA+GGG | + | chr8_4:11252157-11252176 | Msa1313340:intron | 20.0% |
!!! | TTGTTCTTATCATTTTTTGA+AGG | - | chr8_4:11252368-11252387 | None:intergenic | 20.0% |
!! | GAAAAAATATTGGAAAAAGA+TGG | + | chr8_4:11252753-11252772 | Msa1313340:CDS | 20.0% |
!! | AAAAATATTGGAAAAAGATG+GGG | + | chr8_4:11252755-11252774 | Msa1313340:CDS | 20.0% |
!!! | TTTGATAAGGTTATGTATTT+TGG | + | chr8_4:11253114-11253133 | Msa1313340:intron | 20.0% |
!! | AAACTTACGGAAAATTATAA+GGG | - | chr8_4:11253304-11253323 | None:intergenic | 20.0% |
!!! | AATAAAATAAAAGTATGCGA+TGG | - | chr8_4:11254020-11254039 | None:intergenic | 20.0% |
!! | TCATAAATTCTACACAAATT+GGG | - | chr8_4:11254193-11254212 | None:intergenic | 20.0% |
!! | TTCATAAATTCTACACAAAT+TGG | - | chr8_4:11254194-11254213 | None:intergenic | 20.0% |
!! | ACAAATAGAAATGAGATTAT+TGG | + | chr8_4:11254221-11254240 | Msa1313340:intron | 20.0% |
!! | ATTGAGTTTATGAATCAATT+TGG | + | chr8_4:11254251-11254270 | Msa1313340:intron | 20.0% |
!! | TTGAGTTTATGAATCAATTT+GGG | + | chr8_4:11254252-11254271 | Msa1313340:intron | 20.0% |
!!! | CGTCTATTTTTTAAAATCAA+AGG | + | chr8_4:11254821-11254840 | Msa1313340:intron | 20.0% |
!! | ATGGGAAAAGATTAAAAAAA+AGG | - | chr8_4:11255136-11255155 | None:intergenic | 20.0% |
!! | TTGTTTGAATTTACATGATT+TGG | - | chr8_4:11255251-11255270 | None:intergenic | 20.0% |
!!! | ATTGATTTGTTTTAATCAAG+AGG | - | chr8_4:11255466-11255485 | None:intergenic | 20.0% |
!! | TCTTGATTAAAACAAATCAA+TGG | + | chr8_4:11255465-11255484 | Msa1313340:intron | 20.0% |
!! | ACAAATCAATGGATAAAATT+TGG | + | chr8_4:11255476-11255495 | Msa1313340:intron | 20.0% |
!!! | ATTTTGTACTCTCTTTTTAA+TGG | + | chr8_4:11255590-11255609 | Msa1313340:intron | 20.0% |
!!! | TTAAAAGTATCTCAAAAGTT+TGG | + | chr8_4:11255658-11255677 | Msa1313340:intron | 20.0% |
!! | AAAAGGGGAAAAAAAAAAAA+CGG | - | chr8_4:11256339-11256358 | None:intergenic | 20.0% |
! | AGAACTAAAGCTAAAAGATA+TGG | + | chr8_4:11251595-11251614 | Msa1313340:CDS | 25.0% |
!!! | TCGATTAAGCTTTAAAGAAA+CGG | - | chr8_4:11251754-11251773 | None:intergenic | 25.0% |
! | CGAAAAAAGAATTAAGCTAA+GGG | - | chr8_4:11251786-11251805 | None:intergenic | 25.0% |
! | TCGAAAAAAGAATTAAGCTA+AGG | - | chr8_4:11251787-11251806 | None:intergenic | 25.0% |
!!! | TTTTTCGAAATTTTTAGGCA+AGG | + | chr8_4:11251799-11251818 | Msa1313340:intron | 25.0% |
!!! | TTTTCGAAATTTTTAGGCAA+GGG | + | chr8_4:11251800-11251819 | Msa1313340:intron | 25.0% |
!! | TTGTTTCACATAGTTTCTTT+TGG | + | chr8_4:11251961-11251980 | Msa1313340:intron | 25.0% |
!! | TGTTTCACATAGTTTCTTTT+GGG | + | chr8_4:11251962-11251981 | Msa1313340:intron | 25.0% |
!!! | TGATGAATTCTGGAAATTTT+TGG | + | chr8_4:11252055-11252074 | Msa1313340:intron | 25.0% |
!!! | GATGAATTCTGGAAATTTTT+GGG | + | chr8_4:11252056-11252075 | Msa1313340:intron | 25.0% |
!!! | TAGGCTTTTGGAAAAAATAT+TGG | + | chr8_4:11252743-11252762 | Msa1313340:CDS | 25.0% |
!! | AATTGAACAGACAATTTTGA+TGG | - | chr8_4:11253066-11253085 | None:intergenic | 25.0% |
! | TATTCCTGTAGAATTTGATA+AGG | + | chr8_4:11253101-11253120 | Msa1313340:intron | 25.0% |
! | ATAACCTTATCAAATTCTAC+AGG | - | chr8_4:11253108-11253127 | None:intergenic | 25.0% |
!!! | TGGATAAGTTCTCTTTTTTT+AGG | + | chr8_4:11253134-11253153 | Msa1313340:intron | 25.0% |
! | AACTTACGGAAAATTATAAG+GGG | - | chr8_4:11253303-11253322 | None:intergenic | 25.0% |
! | CAAACTTACGGAAAATTATA+AGG | - | chr8_4:11253305-11253324 | None:intergenic | 25.0% |
!! | CTTATAATTTTCCGTAAGTT+TGG | + | chr8_4:11253303-11253322 | Msa1313340:intron | 25.0% |
! | ACAAGACTTTGTACTAAATA+GGG | - | chr8_4:11253527-11253546 | None:intergenic | 25.0% |
! | AACAAGACTTTGTACTAAAT+AGG | - | chr8_4:11253528-11253547 | None:intergenic | 25.0% |
! | ACAGAAAGAAAAAAAACTGT+CGG | - | chr8_4:11253586-11253605 | None:intergenic | 25.0% |
!!! | TTTTTTTGTTGAAGCTGTTT+TGG | + | chr8_4:11253701-11253720 | Msa1313340:intron | 25.0% |
! | CATTGATCATAAAAGATAGA+GGG | - | chr8_4:11253942-11253961 | None:intergenic | 25.0% |
!!! | AAATTGGGTTTTATCAAAAG+GGG | - | chr8_4:11254178-11254197 | None:intergenic | 25.0% |
!!! | CAAATTGGGTTTTATCAAAA+GGG | - | chr8_4:11254179-11254198 | None:intergenic | 25.0% |
!!! | ACAAATTGGGTTTTATCAAA+AGG | - | chr8_4:11254180-11254199 | None:intergenic | 25.0% |
! | ATTGAGACGATAGAAATAAA+AGG | + | chr8_4:11254512-11254531 | Msa1313340:intron | 25.0% |
! | ATTCATTTATGTTGATCCAA+AGG | - | chr8_4:11254673-11254692 | None:intergenic | 25.0% |
! | TTTGGATCAACATAAATGAA+TGG | + | chr8_4:11254672-11254691 | Msa1313340:intron | 25.0% |
! | ATAAATGAATGGTCATGATT+TGG | + | chr8_4:11254683-11254702 | Msa1313340:intron | 25.0% |
! | ATAGAAAGAATATTGAAGAG+TGG | - | chr8_4:11255000-11255019 | None:intergenic | 25.0% |
!! | TTCTTCAATATTCTTGTTTG+CGG | + | chr8_4:11255025-11255044 | Msa1313340:intron | 25.0% |
!! | TTTTAATCTTTTCCCATTGA+AGG | + | chr8_4:11255139-11255158 | Msa1313340:intron | 25.0% |
! | AACAAAAAAGAAGTGAATCA+TGG | + | chr8_4:11255183-11255202 | Msa1313340:intron | 25.0% |
! | TTTCAACAATCAAATTCTCA+CGG | - | chr8_4:11255224-11255243 | None:intergenic | 25.0% |
!! | AATTGAGTTGTTTATGATAG+AGG | - | chr8_4:11255317-11255336 | None:intergenic | 25.0% |
! | TCTATCATAAACAACTCAAT+TGG | + | chr8_4:11255316-11255335 | Msa1313340:intron | 25.0% |
! | TCATCAATCACAGAAAAAAA+CGG | - | chr8_4:11255943-11255962 | None:intergenic | 25.0% |
! | TTGTAATCAGAAACTGATTA+TGG | + | chr8_4:11256125-11256144 | Msa1313340:intron | 25.0% |
!! | TTATGAGATTTTACTTCTGT+TGG | - | chr8_4:11256233-11256252 | None:intergenic | 25.0% |
! | AAAGGGGAAAAAAAAAAAAC+GGG | - | chr8_4:11256338-11256357 | None:intergenic | 25.0% |
! | TAACAATTGACACAGAAAAA+GGG | - | chr8_4:11256355-11256374 | None:intergenic | 25.0% |
AGTTGCATGTATATCAAATC+CGG | + | chr8_4:11251409-11251428 | Msa1313340:CDS | 30.0% | |
AGATTAAGCTGATATGTTTG+CGG | - | chr8_4:11251514-11251533 | None:intergenic | 30.0% | |
CTTAGATATAAAACACCCTA+AGG | + | chr8_4:11251532-11251551 | Msa1313340:CDS | 30.0% | |
AGGATGAAAGATTCGATATA+GGG | + | chr8_4:11251555-11251574 | Msa1313340:CDS | 30.0% | |
AAAAGAATTAAGCTAAGGGA+CGG | - | chr8_4:11251782-11251801 | None:intergenic | 30.0% | |
!! | TTTCGAAATTTTTAGGCAAG+GGG | + | chr8_4:11251801-11251820 | Msa1313340:intron | 30.0% |
! | GGTTTTCTGTTTATTCACAA+AGG | + | chr8_4:11251895-11251914 | Msa1313340:intron | 30.0% |
!!! | TTGGGTGCTATTCATTTTTT+AGG | + | chr8_4:11251980-11251999 | Msa1313340:intron | 30.0% |
!!! | ATTTTTGGGTCAACAAATTC+TGG | + | chr8_4:11252070-11252089 | Msa1313340:intron | 30.0% |
GAATTCAAGTGATTACTACT+TGG | + | chr8_4:11252215-11252234 | Msa1313340:CDS | 30.0% | |
TGCAACAAACAATCTTCTAT+AGG | + | chr8_4:11252540-11252559 | Msa1313340:CDS | 30.0% | |
TGAAATTGAATAGTCAAACC+TGG | - | chr8_4:11252995-11253014 | None:intergenic | 30.0% | |
TAATCCATGTTTGAGAAAAG+AGG | + | chr8_4:11253251-11253270 | Msa1313340:intron | 30.0% | |
! | AAAACCTCTTTTCTCAAACA+TGG | - | chr8_4:11253258-11253277 | None:intergenic | 30.0% |
!! | TACAAAGTCTTGTTAAGTTG+TGG | + | chr8_4:11253534-11253553 | Msa1313340:intron | 30.0% |
! | TTGATGACACATCAAGTAAT+AGG | + | chr8_4:11253608-11253627 | Msa1313340:intron | 30.0% |
TGATGACTGATGTGAAATAT+CGG | + | chr8_4:11253660-11253679 | Msa1313340:intron | 30.0% | |
TGATTACAACTATCGTAACT+TGG | - | chr8_4:11253764-11253783 | None:intergenic | 30.0% | |
CCATTGATCATAAAAGATAG+AGG | - | chr8_4:11253943-11253962 | None:intergenic | 30.0% | |
! | CCTCTATCTTTTATGATCAA+TGG | + | chr8_4:11253940-11253959 | Msa1313340:intron | 30.0% |
AAGAATAGCGATATTGGATT+TGG | - | chr8_4:11254090-11254109 | None:intergenic | 30.0% | |
TGAAGAAAGAATAGCGATAT+TGG | - | chr8_4:11254096-11254115 | None:intergenic | 30.0% | |
TATGAGAGGAATTAAGCAAA+GGG | - | chr8_4:11254128-11254147 | None:intergenic | 30.0% | |
ATATGAGAGGAATTAAGCAA+AGG | - | chr8_4:11254129-11254148 | None:intergenic | 30.0% | |
TTTGCTTAATTCCTCTCATA+TGG | + | chr8_4:11254128-11254147 | Msa1313340:intron | 30.0% | |
TGAATCAATTTGGGCTTATT+AGG | + | chr8_4:11254261-11254280 | Msa1313340:intron | 30.0% | |
CAATTATATTGGAGGAGAAA+AGG | + | chr8_4:11254397-11254416 | Msa1313340:intron | 30.0% | |
CATATCCAATTCCATGTTAA+TGG | + | chr8_4:11254449-11254468 | Msa1313340:intron | 30.0% | |
! | AGATTGGCAAAACATCTTTT+AGG | + | chr8_4:11254558-11254577 | Msa1313340:intron | 30.0% |
!! | GCAAAACATCTTTTAGGAAT+GGG | + | chr8_4:11254564-11254583 | Msa1313340:intron | 30.0% |
!! | CAAAACATCTTTTAGGAATG+GGG | + | chr8_4:11254565-11254584 | Msa1313340:intron | 30.0% |
!! | AAAACATCTTTTAGGAATGG+GGG | + | chr8_4:11254566-11254585 | Msa1313340:intron | 30.0% |
TACTCATGTACATTCAATGA+AGG | + | chr8_4:11254610-11254629 | Msa1313340:intron | 30.0% | |
AGTGAATAAATGTGAACCTT+TGG | + | chr8_4:11254654-11254673 | Msa1313340:intron | 30.0% | |
AAAAATAGACGGTTGAGATT+TGG | - | chr8_4:11254812-11254831 | None:intergenic | 30.0% | |
! | CTTAATTTGAACGAATCTTC+AGG | + | chr8_4:11254936-11254955 | Msa1313340:intron | 30.0% |
!! | GAATCATGGAAGATTTTGAT+TGG | + | chr8_4:11255197-11255216 | Msa1313340:intron | 30.0% |
AGTTGTTTATGATAGAGGAT+TGG | - | chr8_4:11255312-11255331 | None:intergenic | 30.0% | |
ACAACTCAATTGGTGTAATT+AGG | + | chr8_4:11255326-11255345 | Msa1313340:intron | 30.0% | |
!! | TTCGGAAAAAAGAAGTACTA+AGG | + | chr8_4:11255410-11255429 | Msa1313340:intron | 30.0% |
TAAGGTGCGAAAATTAAAGT+TGG | + | chr8_4:11255428-11255447 | Msa1313340:intron | 30.0% | |
!! | TACTGAGATTTTGCTTTTGT+TGG | - | chr8_4:11255622-11255641 | None:intergenic | 30.0% |
AACAAAAGCAAAATCTCAGT+AGG | + | chr8_4:11255621-11255640 | Msa1313340:intron | 30.0% | |
! | AGAATGCTAGTCTAGTATAA+TGG | + | chr8_4:11255765-11255784 | Msa1313340:intron | 30.0% |
ACAACACTTTGTACTAAACA+GGG | - | chr8_4:11255879-11255898 | None:intergenic | 30.0% | |
AACAACACTTTGTACTAAAC+AGG | - | chr8_4:11255880-11255899 | None:intergenic | 30.0% | |
!! | TACAAAGTGTTGTTAAGTTG+TGG | + | chr8_4:11255886-11255905 | Msa1313340:intron | 30.0% |
! | TTGATGACACATCAAGAAAT+AGG | + | chr8_4:11255956-11255975 | Msa1313340:intron | 30.0% |
!!! | TTTTTTTGTCGAAGCTGTTT+TGG | + | chr8_4:11256044-11256063 | Msa1313340:intron | 30.0% |
AAGGGGAAAAAAAAAAAACG+GGG | - | chr8_4:11256337-11256356 | None:intergenic | 30.0% | |
AACAATTGACACAGAAAAAG+GGG | - | chr8_4:11256354-11256373 | None:intergenic | 30.0% | |
CTAACAATTGACACAGAAAA+AGG | - | chr8_4:11256356-11256375 | None:intergenic | 30.0% | |
! | TTTTCTGTGTCAATTGTTAG+AGG | + | chr8_4:11256356-11256375 | Msa1313340:intron | 30.0% |
TTTCTGTGTCAATTGTTAGA+GGG | + | chr8_4:11256357-11256376 | Msa1313340:intron | 30.0% | |
!!! | ATGCCATGATCATTTTTTGT+TGG | + | chr8_4:11256684-11256703 | Msa1313340:intron | 30.0% |
ACACCAACAAAAAATGATCA+TGG | - | chr8_4:11256690-11256709 | None:intergenic | 30.0% | |
! | ATTGTTTGCTTACATTTTGC+AGG | + | chr8_4:11256739-11256758 | Msa1313340:intron | 30.0% |
TCCTTTCTTACTATTAGTTG+TGG | + | chr8_4:11256766-11256785 | Msa1313340:CDS | 30.0% | |
GTTGCATGTATATCAAATCC+GGG | + | chr8_4:11251410-11251429 | Msa1313340:CDS | 35.0% | |
AGATATAAAACACCCTAAGG+AGG | + | chr8_4:11251535-11251554 | Msa1313340:CDS | 35.0% | |
GAGGATGAAAGATTCGATAT+AGG | + | chr8_4:11251554-11251573 | Msa1313340:CDS | 35.0% | |
GGATGAAAGATTCGATATAG+GGG | + | chr8_4:11251556-11251575 | Msa1313340:CDS | 35.0% | |
GATGAAAGATTCGATATAGG+GGG | + | chr8_4:11251557-11251576 | Msa1313340:CDS | 35.0% | |
!!! | GGTATTGTTTTTGACAGGTA+TGG | + | chr8_4:11251646-11251665 | Msa1313340:intron | 35.0% |
AAAGAATTAAGCTAAGGGAC+GGG | - | chr8_4:11251781-11251800 | None:intergenic | 35.0% | |
TCTGTTTATTCACAAAGGTC+TGG | + | chr8_4:11251900-11251919 | Msa1313340:intron | 35.0% | |
CTGTTTATTCACAAAGGTCT+GGG | + | chr8_4:11251901-11251920 | Msa1313340:intron | 35.0% | |
!! | AGGATAAATTTTAGGAAGGG+TGG | + | chr8_4:11252000-11252019 | Msa1313340:intron | 35.0% |
! | ATGAAGATGGTGATGAATTC+TGG | + | chr8_4:11252045-11252064 | Msa1313340:intron | 35.0% |
ATGAATTTGTATACAGGGCA+TGG | + | chr8_4:11252162-11252181 | Msa1313340:intron | 35.0% | |
ACCATAGATACGAGAATCAT+CGG | - | chr8_4:11252247-11252266 | None:intergenic | 35.0% | |
! | ACGATATGACTTGTAGAGTT+GGG | - | chr8_4:11252477-11252496 | None:intergenic | 35.0% |
AACAATCTTCTATAGGTGAG+AGG | + | chr8_4:11252547-11252566 | Msa1313340:CDS | 35.0% | |
! | GCTTTCTTTTTATGAACCTC+GGG | - | chr8_4:11252602-11252621 | None:intergenic | 35.0% |
! | CGCTTTCTTTTTATGAACCT+CGG | - | chr8_4:11252603-11252622 | None:intergenic | 35.0% |
AGGTTCATAAAAAGAAAGCG+TGG | + | chr8_4:11252603-11252622 | Msa1313340:CDS | 35.0% | |
! | TGAAGCACTTACTATGCAAT+TGG | - | chr8_4:11252840-11252859 | None:intergenic | 35.0% |
! | ATAGTGCTACTATCTGTCAT+TGG | - | chr8_4:11253463-11253482 | None:intergenic | 35.0% |
!! | TTGTACTAAATAGGGTATCG+CGG | - | chr8_4:11253519-11253538 | None:intergenic | 35.0% |
GATGACTGATGTGAAATATC+GGG | + | chr8_4:11253661-11253680 | Msa1313340:intron | 35.0% | |
!! | TTTGGTGTTGAAGGTATAAC+AGG | - | chr8_4:11253796-11253815 | None:intergenic | 35.0% |
AAAGATAGAGGGTTGAGATT+TGG | - | chr8_4:11253931-11253950 | None:intergenic | 35.0% | |
AATAGCGATATTGGATTTGG+TGG | - | chr8_4:11254087-11254106 | None:intergenic | 35.0% | |
AAAAGGGGATATGTCTACAT+GGG | - | chr8_4:11254163-11254182 | None:intergenic | 35.0% | |
GTCATTCAGATATGCAATTG+TGG | - | chr8_4:11254322-11254341 | None:intergenic | 35.0% | |
!!! | GCTTTTTTCTACAAATTCCG+TGG | + | chr8_4:11254422-11254441 | Msa1313340:intron | 35.0% |
AGCAACCATTAACATGGAAT+TGG | - | chr8_4:11254457-11254476 | None:intergenic | 35.0% | |
!! | GGCAAAACATCTTTTAGGAA+TGG | + | chr8_4:11254563-11254582 | Msa1313340:intron | 35.0% |
TCCTGACTCATATATATGTC+AGG | + | chr8_4:11254750-11254769 | Msa1313340:intron | 35.0% | |
TCCTGACATATATATGAGTC+AGG | - | chr8_4:11254754-11254773 | None:intergenic | 35.0% | |
ACAAAGTTTCGAGGAACTAA+TGG | - | chr8_4:11254962-11254981 | None:intergenic | 35.0% | |
CTGAGAATAACAAAGTTTCG+AGG | - | chr8_4:11254971-11254990 | None:intergenic | 35.0% | |
AGAATATTGAAGAGTGGATG+TGG | - | chr8_4:11254994-11255013 | None:intergenic | 35.0% | |
! | ATCTTTTCCCATTGAAGGAA+AGG | + | chr8_4:11255144-11255163 | Msa1313340:intron | 35.0% |
TTCACTACCTTTCCTTCAAT+GGG | - | chr8_4:11255154-11255173 | None:intergenic | 35.0% | |
ATTCACTACCTTTCCTTCAA+TGG | - | chr8_4:11255155-11255174 | None:intergenic | 35.0% | |
CTAAATTCTATTCGCGTTTC+TGG | - | chr8_4:11255278-11255297 | None:intergenic | 35.0% | |
TGTTTATGATAGAGGATTGG+AGG | - | chr8_4:11255309-11255328 | None:intergenic | 35.0% | |
!! | AAATTTGGTGTCAACGTCAA+CGG | + | chr8_4:11255491-11255510 | Msa1313340:intron | 35.0% |
AAAAGCAAAATCTCAGTAGG+TGG | + | chr8_4:11255624-11255643 | Msa1313340:intron | 35.0% | |
ATAGTAGCACTATAGTGTAG+CGG | + | chr8_4:11255822-11255841 | Msa1313340:intron | 35.0% | |
CAATCACAGAAAAAAACGGT+CGG | - | chr8_4:11255939-11255958 | None:intergenic | 35.0% | |
GATGACTGATGCAAAATATC+AGG | + | chr8_4:11256009-11256028 | Msa1313340:intron | 35.0% | |
TATCTTCAACACCAAATTGC+TGG | + | chr8_4:11256150-11256169 | Msa1313340:intron | 35.0% | |
AGGGGAAAAAAAAAAAACGG+GGG | - | chr8_4:11256336-11256355 | None:intergenic | 35.0% | |
! | TGTCAATTGTTAGAGGGTAT+CGG | + | chr8_4:11256363-11256382 | Msa1313340:intron | 35.0% |
TAGGTGGTTTCTACTGTATA+GGG | + | chr8_4:11256420-11256439 | Msa1313340:intron | 35.0% | |
CCATCAATCTAAATGTATGC+AGG | - | chr8_4:11256628-11256647 | None:intergenic | 35.0% | |
CCTGCATACATTTAGATTGA+TGG | + | chr8_4:11256625-11256644 | Msa1313340:intron | 35.0% | |
GCCACAACTAATAGTAAGAA+AGG | - | chr8_4:11256770-11256789 | None:intergenic | 35.0% | |
GTAAAACTGAGAGTTGCATT+AGG | + | chr8_4:11256791-11256810 | Msa1313340:CDS | 35.0% | |
! | AGCATCGTTTGCTAAAATAG+TGG | + | chr8_4:11256835-11256854 | Msa1313340:CDS | 35.0% |
! | GCATCGTTTGCTAAAATAGT+GGG | + | chr8_4:11256836-11256855 | Msa1313340:CDS | 35.0% |
CGAATCTTTCATCCTCCTTA+GGG | - | chr8_4:11251550-11251569 | None:intergenic | 40.0% | |
TCGAATCTTTCATCCTCCTT+AGG | - | chr8_4:11251551-11251570 | None:intergenic | 40.0% | |
!!! | GGTGTGGTATTGTTTTTGAC+AGG | + | chr8_4:11251641-11251660 | Msa1313340:CDS | 40.0% |
AATTTGTATACAGGGCATGG+AGG | + | chr8_4:11252165-11252184 | Msa1313340:intron | 40.0% | |
ACCGATGATTCTCGTATCTA+TGG | + | chr8_4:11252243-11252262 | Msa1313340:CDS | 40.0% | |
! | GACGATATGACTTGTAGAGT+TGG | - | chr8_4:11252478-11252497 | None:intergenic | 40.0% |
GACGCTATCATTACTGCATT+AGG | - | chr8_4:11252516-11252535 | None:intergenic | 40.0% | |
! | AGAAGATTGTTTGTTGCAGC+AGG | - | chr8_4:11252538-11252557 | None:intergenic | 40.0% |
TCTATAGGTGAGAGGTTCAA+TGG | + | chr8_4:11252555-11252574 | Msa1313340:CDS | 40.0% | |
TTTATGAACCTCGGGAACAA+TGG | - | chr8_4:11252594-11252613 | None:intergenic | 40.0% | |
! | TTCTCCTTTTAACAGCCTTG+AGG | - | chr8_4:11252650-11252669 | None:intergenic | 40.0% |
!! | ACAAAAAAGTGCCGGTTGTT+GGG | - | chr8_4:11252784-11252803 | None:intergenic | 40.0% |
!! | TACAAAAAAGTGCCGGTTGT+TGG | - | chr8_4:11252785-11252804 | None:intergenic | 40.0% |
CAAACTCCATTTGCAATTCC+AGG | + | chr8_4:11252974-11252993 | Msa1313340:intron | 40.0% | |
GTCAAACCTGGAATTGCAAA+TGG | - | chr8_4:11252983-11253002 | None:intergenic | 40.0% | |
!! | CAGACAATTTTGATGGCAAG+TGG | - | chr8_4:11253059-11253078 | None:intergenic | 40.0% |
ATCATATGTGTGGCAGAATG+GGG | - | chr8_4:11253357-11253376 | None:intergenic | 40.0% | |
CATCATATGTGTGGCAGAAT+GGG | - | chr8_4:11253358-11253377 | None:intergenic | 40.0% | |
GCATAGTTGCATCATATGTG+TGG | - | chr8_4:11253367-11253386 | None:intergenic | 40.0% | |
TGCAACTATGCAAATCTTGC+AGG | + | chr8_4:11253376-11253395 | Msa1313340:intron | 40.0% | |
GCAACTATGCAAATCTTGCA+GGG | + | chr8_4:11253377-11253396 | Msa1313340:intron | 40.0% | |
TGCTACTATCTGTCATTGGA+GGG | - | chr8_4:11253459-11253478 | None:intergenic | 40.0% | |
ATAGTAGCACTATAGCGTAG+TGG | + | chr8_4:11253470-11253489 | Msa1313340:intron | 40.0% | |
GGTTCAAATTCCACTAGCAT+CGG | - | chr8_4:11253565-11253584 | None:intergenic | 40.0% | |
ACTATCGTAACTTGGACTCT+TGG | - | chr8_4:11253756-11253775 | None:intergenic | 40.0% | |
TACCTTCAACACCAAATTGC+TGG | + | chr8_4:11253800-11253819 | Msa1313340:CDS | 40.0% | |
ACCTTCAACACCAAATTGCT+GGG | + | chr8_4:11253801-11253820 | Msa1313340:CDS | 40.0% | |
!! | GGTTTTGTGATCCATATGAG+AGG | - | chr8_4:11254142-11254161 | None:intergenic | 40.0% |
CAAAAGGGGATATGTCTACA+TGG | - | chr8_4:11254164-11254183 | None:intergenic | 40.0% | |
GGAATTGGATATGTTGTCCA+CGG | - | chr8_4:11254442-11254461 | None:intergenic | 40.0% | |
CTACGTAGCAACCATTAACA+TGG | - | chr8_4:11254463-11254482 | None:intergenic | 40.0% | |
GAGATTCGTGAACAACAGAT+TGG | + | chr8_4:11254542-11254561 | Msa1313340:intron | 40.0% | |
!! | TGGTCATGATTTGGTGTCAA+CGG | + | chr8_4:11254692-11254711 | Msa1313340:intron | 40.0% |
ATTGGTGTAATTAGGCTACC+TGG | + | chr8_4:11255334-11255353 | Msa1313340:intron | 40.0% | |
AACACAGGCAATTGAGGTTT+CGG | + | chr8_4:11255392-11255411 | Msa1313340:intron | 40.0% | |
! | CTGTCAGTGTTTTCCTATGA+CGG | + | chr8_4:11255799-11255818 | Msa1313340:intron | 40.0% |
! | ATAGTGCTACTATCCGTCAT+AGG | - | chr8_4:11255815-11255834 | None:intergenic | 40.0% |
CGGTCGGTTAAAATTTCACT+AGG | - | chr8_4:11255923-11255942 | None:intergenic | 40.0% | |
AAAGCAACTTCGACTCTAAG+TGG | - | chr8_4:11256096-11256115 | None:intergenic | 40.0% | |
ACTTAGAGTCGAAGTTGCTT+TGG | + | chr8_4:11256095-11256114 | Msa1313340:intron | 40.0% | |
TGGAGTCTAGGTACATTTGT+TGG | + | chr8_4:11256170-11256189 | Msa1313340:intron | 40.0% | |
AAAAAAAAAAAACGGGGGGG+GGG | - | chr8_4:11256331-11256350 | None:intergenic | 40.0% | |
GAAAAAAAAAAAACGGGGGG+GGG | - | chr8_4:11256332-11256351 | None:intergenic | 40.0% | |
GGAAAAAAAAAAAACGGGGG+GGG | - | chr8_4:11256333-11256352 | None:intergenic | 40.0% | |
GGGAAAAAAAAAAAACGGGG+GGG | - | chr8_4:11256334-11256353 | None:intergenic | 40.0% | |
GGGGAAAAAAAAAAAACGGG+GGG | - | chr8_4:11256335-11256354 | None:intergenic | 40.0% | |
!! | AGCTTTGGATCTTCTTCAGT+AGG | + | chr8_4:11256401-11256420 | Msa1313340:intron | 40.0% |
TTTGGATCTTCTTCAGTAGG+TGG | + | chr8_4:11256404-11256423 | Msa1313340:intron | 40.0% | |
GTAGGTGGTTTCTACTGTAT+AGG | + | chr8_4:11256419-11256438 | Msa1313340:intron | 40.0% | |
!! | TGATGGTGTTGTTGAGTTGA+TGG | + | chr8_4:11256642-11256661 | Msa1313340:intron | 40.0% |
!! | TGTTGAGTTGATGGAAACCA+TGG | + | chr8_4:11256651-11256670 | Msa1313340:intron | 40.0% |
CCTTCTATCTTTCGGTTCAA+CGG | - | chr8_4:11256914-11256933 | None:intergenic | 40.0% | |
CGTTGAACCGAAAGATAGAA+GGG | + | chr8_4:11256912-11256931 | Msa1313340:CDS | 40.0% | |
GGCATATCCCTTCTATCTTT+CGG | - | chr8_4:11256922-11256941 | None:intergenic | 40.0% | |
TAAGCAGACGTGATACAACC+TGG | - | chr8_4:11251452-11251471 | None:intergenic | 45.0% | |
AAACAATACCACACCATCCC+CGG | - | chr8_4:11251636-11251655 | None:intergenic | 45.0% | |
!! | GGGGATTTTGCTGTGTTGTA+TGG | + | chr8_4:11251820-11251839 | Msa1313340:intron | 45.0% |
TGCTGTGTTGTATGGTGTGA+TGG | + | chr8_4:11251828-11251847 | Msa1313340:intron | 45.0% | |
TATGGTGTGATGGTCACTAG+TGG | + | chr8_4:11251838-11251857 | Msa1313340:intron | 45.0% | |
! | GTATTGTCTCATGGTCTTGC+TGG | + | chr8_4:11251868-11251887 | Msa1313340:intron | 45.0% |
!! | TCTCATGGTCTTGCTGGTTT+CGG | + | chr8_4:11251874-11251893 | Msa1313340:intron | 45.0% |
! | CGGTGTTGGAAAGATGAAGA+TGG | + | chr8_4:11252032-11252051 | Msa1313340:intron | 45.0% |
TATCACATCTCCTTTGCTGC+AGG | + | chr8_4:11252336-11252355 | Msa1313340:intron | 45.0% | |
TCCTGCTAACCTCTCTTGTA+CGG | + | chr8_4:11252389-11252408 | Msa1313340:CDS | 45.0% | |
! | GGGACCAATTTGTTCCTTAG+CGG | - | chr8_4:11252457-11252476 | None:intergenic | 45.0% |
! | GGTGAGAGGTTCAATGGATT+TGG | + | chr8_4:11252561-11252580 | Msa1313340:CDS | 45.0% |
GATATCATCCATTGTTCCCG+AGG | + | chr8_4:11252583-11252602 | Msa1313340:CDS | 45.0% | |
GAGGAGAGATTCCACAAACA+AGG | - | chr8_4:11252631-11252650 | None:intergenic | 45.0% | |
GTTTGTGGAATCTCTCCTCA+AGG | + | chr8_4:11252632-11252651 | Msa1313340:CDS | 45.0% | |
CTCTCCTCAAGGCTGTTAAA+AGG | + | chr8_4:11252643-11252662 | Msa1313340:CDS | 45.0% | |
CTTTCTCTTCTTCCCTTGGT+GGG | - | chr8_4:11252685-11252704 | None:intergenic | 45.0% | |
ACTTTCTCTTCTTCCCTTGG+TGG | - | chr8_4:11252686-11252705 | None:intergenic | 45.0% | |
TGCACTTTCTCTTCTTCCCT+TGG | - | chr8_4:11252689-11252708 | None:intergenic | 45.0% | |
AGTGCAGAGTCACCAACAAA+AGG | + | chr8_4:11252703-11252722 | Msa1313340:CDS | 45.0% | |
CAGAGTCACCAACAAAAGGT+TGG | + | chr8_4:11252707-11252726 | Msa1313340:CDS | 45.0% | |
! | GTGTCGCTACAAAAAAGTGC+CGG | - | chr8_4:11252792-11252811 | None:intergenic | 45.0% |
TAGAAAGTCCAGCCTTGCTT+GGG | - | chr8_4:11252814-11252833 | None:intergenic | 45.0% | |
ACACATTCAAACACGCTTCG+CGG | + | chr8_4:11252861-11252880 | Msa1313340:intron | 45.0% | |
! | GGAAGCACATGCCAAACTTA+CGG | - | chr8_4:11253317-11253336 | None:intergenic | 45.0% |
GGGGGAGAAAAAGACTAATG+TGG | - | chr8_4:11253338-11253357 | None:intergenic | 45.0% | |
TCATATGTGTGGCAGAATGG+GGG | - | chr8_4:11253356-11253375 | None:intergenic | 45.0% | |
GCATCATATGTGTGGCAGAA+TGG | - | chr8_4:11253359-11253378 | None:intergenic | 45.0% | |
! | GTGCTACTATCTGTCATTGG+AGG | - | chr8_4:11253460-11253479 | None:intergenic | 45.0% |
CCTTCAACACCAAATTGCTG+GGG | + | chr8_4:11253802-11253821 | Msa1313340:CDS | 45.0% | |
!! | GGGTTGAGATTTGGTGTCAA+CGG | - | chr8_4:11253922-11253941 | None:intergenic | 45.0% |
!! | TCTTTTAGGAATGGGGGAAG+AGG | + | chr8_4:11254572-11254591 | Msa1313340:intron | 45.0% |
AATGAAGGAGTGATCACGTG+AGG | + | chr8_4:11254625-11254644 | Msa1313340:intron | 45.0% | |
TCAATGAATCCGTTGACACC+TGG | + | chr8_4:11254717-11254736 | Msa1313340:intron | 45.0% | |
GCATAGTTGCATCATATGCG+CGG | - | chr8_4:11255722-11255741 | None:intergenic | 45.0% | |
TGCAACTATGCAAACCTTGC+AGG | + | chr8_4:11255731-11255750 | Msa1313340:intron | 45.0% | |
TATGCAAACCTTGCAGGACA+AGG | + | chr8_4:11255737-11255756 | Msa1313340:intron | 45.0% | |
ATGCAAACCTTGCAGGACAA+GGG | + | chr8_4:11255738-11255757 | Msa1313340:intron | 45.0% | |
! | TCTAAAACCCTTGTCCTGCA+AGG | - | chr8_4:11255748-11255767 | None:intergenic | 45.0% |
GACTCGTAGACAGTTGCATA+TGG | - | chr8_4:11256074-11256093 | None:intergenic | 45.0% | |
ACACCAAATTGCTGGAGTCT+AGG | + | chr8_4:11256158-11256177 | Msa1313340:intron | 45.0% | |
GTACCTAGACTCCAGCAATT+TGG | - | chr8_4:11256164-11256183 | None:intergenic | 45.0% | |
AAAAAAAAAAACGGGGGGGG+GGG | - | chr8_4:11256330-11256349 | None:intergenic | 45.0% | |
ATGGCATGCTACAACAACCA+TGG | - | chr8_4:11256671-11256690 | None:intergenic | 45.0% | |
GCATTAGGAGACATCGTTGT+TGG | + | chr8_4:11256806-11256825 | Msa1313340:CDS | 45.0% | |
TTAGGAGACATCGTTGTTGG+AGG | + | chr8_4:11256809-11256828 | Msa1313340:CDS | 45.0% | |
CCGTTGAACCGAAAGATAGA+AGG | + | chr8_4:11256911-11256930 | Msa1313340:CDS | 45.0% | |
!!! | TTACAAATATATATAATTTT+TGG | + | chr8_4:11256573-11256592 | Msa1313340:intron | 5.0% |
!!! | TACAAATATATATAATTTTT+GGG | + | chr8_4:11256574-11256593 | Msa1313340:intron | 5.0% |
ATACAACCTGGACGTGCATC+AGG | - | chr8_4:11251440-11251459 | None:intergenic | 50.0% | |
CGATATAGGGGGAACTTCTG+AGG | + | chr8_4:11251568-11251587 | Msa1313340:CDS | 50.0% | |
ATGGTCTCCGAATCTGTACC+CGG | + | chr8_4:11251614-11251633 | Msa1313340:CDS | 50.0% | |
AACAATACCACACCATCCCC+GGG | - | chr8_4:11251635-11251654 | None:intergenic | 50.0% | |
GTGTGATGGTCACTAGTGGT+GGG | + | chr8_4:11251842-11251861 | Msa1313340:intron | 50.0% | |
! | GGTGGGAGTGTATTGTCTCA+TGG | + | chr8_4:11251859-11251878 | Msa1313340:intron | 50.0% |
AGGAAGGGTGGTGAAGATGA+CGG | + | chr8_4:11252012-11252031 | Msa1313340:intron | 50.0% | |
AAGGTCTGAACCTGCAGCAA+AGG | - | chr8_4:11252349-11252368 | None:intergenic | 50.0% | |
ACCGTACAAGAGAGGTTAGC+AGG | - | chr8_4:11252393-11252412 | None:intergenic | 50.0% | |
CCACAATCACCGTACAAGAG+AGG | - | chr8_4:11252401-11252420 | None:intergenic | 50.0% | |
CCTCTCTTGTACGGTGATTG+TGG | + | chr8_4:11252398-11252417 | Msa1313340:CDS | 50.0% | |
! | AAAGCGTGGCACCTTGTTTG+TGG | + | chr8_4:11252617-11252636 | Msa1313340:CDS | 50.0% |
! | CCTTCGCACCAACCTTTTGT+TGG | - | chr8_4:11252718-11252737 | None:intergenic | 50.0% |
!! | CCAACAAAAGGTTGGTGCGA+AGG | + | chr8_4:11252715-11252734 | Msa1313340:CDS | 50.0% |
! | GCGAAGGATTGCTAGGCTTT+TGG | + | chr8_4:11252731-11252750 | Msa1313340:CDS | 50.0% |
AGATGGGGAAACCCAACAAC+CGG | + | chr8_4:11252770-11252789 | Msa1313340:CDS | 50.0% | |
TTTGTAGCGACACCCAAGCA+AGG | + | chr8_4:11252799-11252818 | Msa1313340:CDS | 50.0% | |
CTAGAAAGTCCAGCCTTGCT+TGG | - | chr8_4:11252815-11252834 | None:intergenic | 50.0% | |
CAAGCAAGGCTGGACTTTCT+AGG | + | chr8_4:11252813-11252832 | Msa1313340:CDS | 50.0% | |
TGTGGAATCACCGATGCTAG+TGG | + | chr8_4:11253552-11253571 | Msa1313340:intron | 50.0% | |
!! | CCCCAGCAATTTGGTGTTGA+AGG | - | chr8_4:11253805-11253824 | None:intergenic | 50.0% |
AACACCAAATTGCTGGGGTC+TGG | + | chr8_4:11253807-11253826 | Msa1313340:CDS | 50.0% | |
ACACCAAATTGCTGGGGTCT+GGG | + | chr8_4:11253808-11253827 | Msa1313340:CDS | 50.0% | |
TCAACGAATCCGTTGACACC+TGG | - | chr8_4:11254787-11254806 | None:intergenic | 50.0% | |
AGGCTACCTGGATCCATTGA+TGG | + | chr8_4:11255346-11255365 | Msa1313340:intron | 50.0% | |
GGCTACCTGGATCCATTGAT+GGG | + | chr8_4:11255347-11255366 | Msa1313340:intron | 50.0% | |
GCTACCTGGATCCATTGATG+GGG | + | chr8_4:11255348-11255367 | Msa1313340:intron | 50.0% | |
TCTCGTTGCTTCCCCATCAA+TGG | - | chr8_4:11255362-11255381 | None:intergenic | 50.0% | |
GCGATGAACACAGGCAATTG+AGG | + | chr8_4:11255386-11255405 | Msa1313340:intron | 50.0% | |
AAAAAAAAAACGGGGGGGGG+GGG | - | chr8_4:11256329-11256348 | None:intergenic | 50.0% | |
TGGTCTCCGAATCTGTACCC+GGG | + | chr8_4:11251615-11251634 | Msa1313340:CDS | 55.0% | |
ACCATCCCCGGGTACAGATT+CGG | - | chr8_4:11251624-11251643 | None:intergenic | 55.0% | |
GGTGTGATGGTCACTAGTGG+TGG | + | chr8_4:11251841-11251860 | Msa1313340:intron | 55.0% | |
! | GGTGGTGAAGATGACGGTGT+TGG | + | chr8_4:11252018-11252037 | Msa1313340:intron | 55.0% |
TACAGGGCATGGAGGAACTG+TGG | + | chr8_4:11252173-11252192 | Msa1313340:intron | 55.0% | |
GGCGCCGCTAAGGAACAAAT+TGG | + | chr8_4:11252450-11252469 | Msa1313340:CDS | 55.0% | |
AAGCGTAGAGTCACCCACCA+AGG | + | chr8_4:11252669-11252688 | Msa1313340:CDS | 55.0% | |
AGCGTAGAGTCACCCACCAA+GGG | + | chr8_4:11252670-11252689 | Msa1313340:CDS | 55.0% | |
! | GGTTGGTGCGAAGGATTGCT+AGG | + | chr8_4:11252724-11252743 | Msa1313340:CDS | 55.0% |
GTACCCAGACCCCAGCAATT+TGG | - | chr8_4:11253814-11253833 | None:intergenic | 55.0% | |
CCGTTGACACCAGGTGTCAA+CGG | - | chr8_4:11254775-11254794 | None:intergenic | 55.0% | |
! | CCGTTGACACCTGGTGTCAA+CGG | + | chr8_4:11254726-11254745 | Msa1313340:intron | 55.0% |
AGTCAGGATCCGTTGACACC+AGG | - | chr8_4:11253910-11253929 | None:intergenic | 55.0% | |
TGTCAGGATCCGTTGACACC+AGG | + | chr8_4:11254766-11254785 | Msa1313340:intron | 55.0% | |
! | CCGTTGACACCTGGTGTCAA+CGG | - | chr8_4:11254726-11254745 | None:intergenic | 55.0% |
CCGTTGACACCAGGTGTCAA+CGG | + | chr8_4:11254775-11254794 | Msa1313340:intron | 55.0% | |
GCTTCCCCATCAATGGATCC+AGG | - | chr8_4:11255355-11255374 | None:intergenic | 55.0% | |
ATCATATGCGCGGCAGAGTG+GGG | - | chr8_4:11255712-11255731 | None:intergenic | 55.0% | |
CATCATATGCGCGGCAGAGT+GGG | - | chr8_4:11255713-11255732 | None:intergenic | 55.0% | |
AAAAAAAAACGGGGGGGGGG+GGG | - | chr8_4:11256328-11256347 | None:intergenic | 55.0% | |
GGTCTCCGAATCTGTACCCG+GGG | + | chr8_4:11251616-11251635 | Msa1313340:CDS | 60.0% | |
TCCGAATCTGTACCCGGGGA+TGG | + | chr8_4:11251620-11251639 | Msa1313340:CDS | 60.0% | |
ATCTGTACCCGGGGATGGTG+TGG | + | chr8_4:11251625-11251644 | Msa1313340:CDS | 60.0% | |
AGGGCATGGAGGAACTGTGG+AGG | + | chr8_4:11252176-11252195 | Msa1313340:intron | 60.0% | |
GCATGGAGGAACTGTGGAGG+AGG | + | chr8_4:11252179-11252198 | Msa1313340:CDS | 60.0% | |
GTGGACGCTTGTTTCAGCGC+CGG | + | chr8_4:11252417-11252436 | Msa1313340:CDS | 60.0% | |
!!! | TTCAGCGCCGGCCTTTTCGA+AGG | + | chr8_4:11252429-11252448 | Msa1313340:CDS | 60.0% |
CCTTAGCGGCGCCTTCGAAA+AGG | - | chr8_4:11252443-11252462 | None:intergenic | 60.0% | |
!!! | CCTTTTCGAAGGCGCCGCTA+AGG | + | chr8_4:11252440-11252459 | Msa1313340:CDS | 60.0% |
TAGCGACACCCAAGCAAGGC+TGG | + | chr8_4:11252803-11252822 | Msa1313340:CDS | 60.0% | |
! | CGAGAGAGCGCGATGAACAC+AGG | + | chr8_4:11255377-11255396 | Msa1313340:intron | 60.0% |
TCATATGCGCGGCAGAGTGG+GGG | - | chr8_4:11255711-11255730 | None:intergenic | 60.0% | |
GCATCATATGCGCGGCAGAG+TGG | - | chr8_4:11255714-11255733 | None:intergenic | 60.0% | |
AAAAAAAACGGGGGGGGGGG+GGG | - | chr8_4:11256327-11256346 | None:intergenic | 60.0% | |
GTGGGTGCAGTGAAAGCTGC+AGG | + | chr8_4:11256854-11256873 | Msa1313340:CDS | 60.0% | |
GGTGCAGTGAAAGCTGCAGG+TGG | + | chr8_4:11256857-11256876 | Msa1313340:CDS | 60.0% | |
GGACGTGCATCAGGAGCTCC+CGG | - | chr8_4:11251431-11251450 | None:intergenic | 65.0% | |
GGAGCTCCTGATGCACGTCC+AGG | + | chr8_4:11251431-11251450 | Msa1313340:CDS | 65.0% | |
AGCGGCGCCTTCGAAAAGGC+CGG | - | chr8_4:11252439-11252458 | None:intergenic | 65.0% | |
AAAAAAACGGGGGGGGGGGG+GGG | - | chr8_4:11256326-11256345 | None:intergenic | 65.0% | |
TATGCGCGGCAGAGTGGGGG+AGG | - | chr8_4:11255708-11255727 | None:intergenic | 70.0% | |
AAAAAACGGGGGGGGGGGGG+GGG | - | chr8_4:11256325-11256344 | None:intergenic | 70.0% | |
AAAAACGGGGGGGGGGGGGG+GGG | - | chr8_4:11256324-11256343 | None:intergenic | 75.0% | |
! | AAAACGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256323-11256342 | None:intergenic | 80.0% |
! | AAACGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256322-11256341 | None:intergenic | 85.0% |
! | AACGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256321-11256340 | None:intergenic | 90.0% |
! | ACGGGGGGGGGGGGGGGGGG+GGG | - | chr8_4:11256320-11256339 | None:intergenic | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 11251392 | 11256949 | 11251392 | ID=Msa1313340;Name=Msa1313340 |
chr8_4 | mRNA | 11251392 | 11256949 | 11251392 | ID=Msa1313340-mRNA-1;Parent=Msa1313340;Name=Msa1313340-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.2|1|1|5|0|383 |
chr8_4 | exon | 11251392 | 11251662 | 11251392 | ID=Msa1313340-mRNA-1:exon:4195;Parent=Msa1313340-mRNA-1 |
chr8_4 | exon | 11252178 | 11252264 | 11252178 | ID=Msa1313340-mRNA-1:exon:4196;Parent=Msa1313340-mRNA-1 |
chr8_4 | exon | 11252358 | 11252847 | 11252358 | ID=Msa1313340-mRNA-1:exon:4197;Parent=Msa1313340-mRNA-1 |
chr8_4 | exon | 11253715 | 11253829 | 11253715 | ID=Msa1313340-mRNA-1:exon:4198;Parent=Msa1313340-mRNA-1 |
chr8_4 | exon | 11256761 | 11256949 | 11256761 | ID=Msa1313340-mRNA-1:exon:4199;Parent=Msa1313340-mRNA-1 |
chr8_4 | CDS | 11251392 | 11251662 | 11251392 | ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1 |
chr8_4 | CDS | 11252178 | 11252264 | 11252178 | ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1 |
chr8_4 | CDS | 11252358 | 11252847 | 11252358 | ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1 |
chr8_4 | CDS | 11253715 | 11253829 | 11253715 | ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1 |
chr8_4 | CDS | 11256761 | 11256949 | 11256761 | ID=Msa1313340-mRNA-1:cds;Parent=Msa1313340-mRNA-1 |
Gene Sequence |
Protein sequence |