Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315360 | sp|Q9UUC8|RM51_SCHPO | 27.358 | 106 | 77 | 0 | 9 | 114 | 23 | 128 | 2.27e-14 | 67.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315360 | G7L937 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 1.05e-83 | 249 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0709150 | Msa1315360 | 0.888776 | 4.372518e-73 | -8.615850e-47 |
Msa0139690 | Msa1315360 | 0.904470 | 1.186695e-79 | -8.615850e-47 |
Msa1307540 | Msa1315360 | 0.893313 | 7.063471e-75 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315360 | MtrunA17_Chr8g0344921 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.01e-87 | 249 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315360 | AT3G59650.1 | 83.193 | 119 | 20 | 0 | 1 | 119 | 1 | 119 | 7.54e-74 | 215 |
Msa1315360 | AT3G59650.2 | 67.808 | 146 | 20 | 1 | 1 | 119 | 1 | 146 | 5.08e-68 | 201 |
Find 68 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATATTTGATAGGGCATTTA+TGG | 0.120191 | 8_4:+14728064 | Msa1315360:intron |
GTCGCATTTGCCAGCGTTTA+AGG | 0.191698 | 8_4:+14728088 | Msa1315360:CDS |
CACACACCACTCGGTCATTA+TGG | 0.253183 | 8_4:-14728269 | None:intergenic |
GTGAGCTGTGCGGCGGCGTT+AGG | 0.286266 | 8_4:-14725897 | None:intergenic |
GTAACTATGAATTATTTCTT+TGG | 0.303962 | 8_4:-14728758 | None:intergenic |
GACAACTGCTTTGAAATATT+AGG | 0.339185 | 8_4:+14728416 | Msa1315360:CDS |
AGATGGCATTGCGAGGAGTT+TGG | 0.367673 | 8_4:+14725970 | Msa1315360:exon |
CGTTGTTAGCTATAGCGATT+GGG | 0.368754 | 8_4:+14726007 | Msa1315360:CDS |
TCCCAGTGCATTCCTTAGCC+TGG | 0.373420 | 8_4:-14728331 | None:intergenic |
AATTCATAGTTACTATATAA+TGG | 0.374235 | 8_4:+14728768 | Msa1315360:three_prime_UTR |
AGTGGTGTGTGTGAAGAATA+TGG | 0.393785 | 8_4:+14728281 | Msa1315360:CDS |
AAAAGGTAGAAACTATATAA+TGG | 0.394205 | 8_4:+14728809 | Msa1315360:three_prime_UTR |
ACCTTGCACGCTAGGGTGTT+TGG | 0.399445 | 8_4:-14728388 | None:intergenic |
AAATTCTCAATCGGAGAAAA+CGG | 0.414689 | 8_4:-14725844 | None:intergenic |
TGAGCTGTGCGGCGGCGTTA+GGG | 0.416592 | 8_4:-14725896 | None:intergenic |
TGTTGTTTGGCGCTATTGCC+AGG | 0.418369 | 8_4:+14728533 | Msa1315360:three_prime_UTR |
GCTTAAGTTCTCATGTTGTT+TGG | 0.421272 | 8_4:+14728520 | Msa1315360:three_prime_UTR |
TTAATCAAATATCTGTGAAC+TGG | 0.439984 | 8_4:+14728494 | Msa1315360:three_prime_UTR |
GTCCATGTACCTTGCACGCT+AGG | 0.449503 | 8_4:-14728396 | None:intergenic |
GTGGAAGTAGCAGAGGCATT+AGG | 0.465860 | 8_4:+14726030 | Msa1315360:CDS |
GCATGCAGAAGTATCTCTTC+CGG | 0.466200 | 8_4:-14728306 | None:intergenic |
GGAGGCGAACCCTCAGTTAG+AGG | 0.466422 | 8_4:+14728109 | Msa1315360:CDS |
GTATGTATTAGTCAACAAAA+AGG | 0.475742 | 8_4:+14728792 | Msa1315360:three_prime_UTR |
AATTCTCAATCGGAGAAAAC+GGG | 0.485540 | 8_4:-14725843 | None:intergenic |
TGATTAACTGACCAGAGAAA+AGG | 0.500162 | 8_4:-14728478 | None:intergenic |
ATCTGATGAATGGTGGTTGT+TGG | 0.508884 | 8_4:-14725951 | None:intergenic |
ACCCTAGCGTGCAAGGTACA+TGG | 0.511271 | 8_4:+14728394 | Msa1315360:CDS |
TCGTTGTTAGCTATAGCGAT+TGG | 0.511918 | 8_4:+14726006 | Msa1315360:CDS |
TGGTCAGCATCCACATCTAA+AGG | 0.514097 | 8_4:+14728151 | Msa1315360:CDS |
TTCTGCATGCAACCAGGCTA+AGG | 0.518615 | 8_4:+14728319 | Msa1315360:CDS |
AACCAGGCTAAGGAATGCAC+TGG | 0.528014 | 8_4:+14728329 | Msa1315360:CDS |
TCGCAATGCCATCTGATGAA+TGG | 0.539991 | 8_4:-14725961 | None:intergenic |
TACAAACTAACAATATATAA+CGG | 0.542968 | 8_4:-14728645 | None:intergenic |
ATGGTGTTTAACTGAAATCC+TGG | 0.546587 | 8_4:-14728551 | None:intergenic |
GTTGGACGGCTGACGGTGAT+CGG | 0.546998 | 8_4:-14725933 | None:intergenic |
GGGTTCGCCTCCTTAAACGC+TGG | 0.551134 | 8_4:-14728098 | None:intergenic |
TCCATGTACCTTGCACGCTA+GGG | 0.551964 | 8_4:-14728395 | None:intergenic |
GATTAACTATCAGCTGATTG+TGG | 0.553497 | 8_4:+14728599 | Msa1315360:three_prime_UTR |
CGGCTGACGGTGATCGGAGA+CGG | 0.561368 | 8_4:-14725927 | None:intergenic |
ACCAAACACCCTAGCGTGCA+AGG | 0.562815 | 8_4:+14728387 | Msa1315360:CDS |
TCAGTGTCCACCTCTAACTG+AGG | 0.586148 | 8_4:-14728119 | None:intergenic |
ACACTTAAAAGACTAAGCTA+TGG | 0.587092 | 8_4:-14728570 | None:intergenic |
GTGTGTGAAGAATATGGATC+CGG | 0.590195 | 8_4:+14728287 | Msa1315360:CDS |
GGCTAAGGAATGCACTGGGA+AGG | 0.590269 | 8_4:+14728334 | Msa1315360:CDS |
AACAACCACCATTCATCAGA+TGG | 0.591625 | 8_4:+14725953 | Msa1315360:exon |
GTGGACACTGAAATGATTCG+TGG | 0.592382 | 8_4:+14728131 | Msa1315360:CDS |
GATGAATGGTGGTTGTTGGA+CGG | 0.594620 | 8_4:-14725947 | None:intergenic |
AGATACTTCTGCATGCAACC+AGG | 0.597112 | 8_4:+14728313 | Msa1315360:CDS |
CAGTGTCCACCTCTAACTGA+GGG | 0.607705 | 8_4:-14728118 | None:intergenic |
GGATCGACTTAGCACTACTA+CGG | 0.608740 | 8_4:-14728457 | None:intergenic |
TATTCTTCACACACACCACT+CGG | 0.614073 | 8_4:-14728278 | None:intergenic |
GGCGAACCCTCAGTTAGAGG+TGG | 0.624239 | 8_4:+14728112 | Msa1315360:CDS |
GGTGGTTGTTGGACGGCTGA+CGG | 0.631122 | 8_4:-14725940 | None:intergenic |
TTTCTTTGGCGAGTAAACCA+TGG | 0.636878 | 8_4:-14728744 | None:intergenic |
TTATCTTCGCTAGAGAACCA+TGG | 0.637249 | 8_4:+14728727 | Msa1315360:three_prime_UTR |
GTTGTTAGCTATAGCGATTG+GGG | 0.643269 | 8_4:+14726008 | Msa1315360:CDS |
GCATTTGCCAGCGTTTAAGG+AGG | 0.645640 | 8_4:+14728091 | Msa1315360:CDS |
GAAGGAAAGTAATTAAGCTG+AGG | 0.646557 | 8_4:+14728352 | Msa1315360:CDS |
ACCAGGCTAAGGAATGCACT+GGG | 0.650150 | 8_4:+14728330 | Msa1315360:CDS |
AGGCTCTGTGAGCTGTGCGG+CGG | 0.653718 | 8_4:-14725904 | None:intergenic |
ATTCATCAGATGGCATTGCG+AGG | 0.654895 | 8_4:+14725963 | Msa1315360:exon |
GATTGGGGTGGAAGTAGCAG+AGG | 0.657242 | 8_4:+14726023 | Msa1315360:CDS |
GTTAGCTATAGCGATTGGGG+TGG | 0.672048 | 8_4:+14726011 | Msa1315360:CDS |
TATAACGGAGTACACAAACT+CGG | 0.675147 | 8_4:-14728630 | None:intergenic |
CAATGCCATCTGATGAATGG+TGG | 0.680972 | 8_4:-14725958 | None:intergenic |
CTGACGGTGATCGGAGACGG+AGG | 0.714407 | 8_4:-14725924 | None:intergenic |
CGGAGGCTCTGTGAGCTGTG+CGG | 0.730038 | 8_4:-14725907 | None:intergenic |
AGAGAACCATAATGACCGAG+TGG | 0.735330 | 8_4:+14728263 | Msa1315360:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTTAATTAAAAGAGT+TGG | + | chr8_4:14725809-14725828 | Msa1315360:five_prime_UTR | 10.0% |
!!! | TATTTTTAATTAAAAGAGTT+GGG | + | chr8_4:14725810-14725829 | Msa1315360:five_prime_UTR | 10.0% |
!! | ATAAAAAAATGAAAACTTTA+GGG | - | chr8_4:14726127-14726146 | None:intergenic | 10.0% |
!! | AATAAAAAAATGAAAACTTT+AGG | - | chr8_4:14726128-14726147 | None:intergenic | 10.0% |
!!! | AAAGTTTTCATTTTTTTATT+TGG | + | chr8_4:14726128-14726147 | Msa1315360:intron | 10.0% |
!!! | AAGTTTTCATTTTTTTATTT+GGG | + | chr8_4:14726129-14726148 | Msa1315360:intron | 10.0% |
!!! | AATTTTATGAATTATGATAT+TGG | + | chr8_4:14726728-14726747 | Msa1315360:intron | 10.0% |
!!! | TTTTTAAAAAACTGTTTTTA+TGG | + | chr8_4:14726970-14726989 | Msa1315360:intron | 10.0% |
!!! | TTTTTTTAAAACTGTTTTTA+TGG | + | chr8_4:14727763-14727782 | Msa1315360:intron | 10.0% |
!!! | TTTAGTTTTAAATATTTGAT+AGG | + | chr8_4:14728054-14728073 | Msa1315360:intron | 10.0% |
!!! | TTAGTTTTAAATATTTGATA+GGG | + | chr8_4:14727254-14727273 | Msa1315360:intron | 10.0% |
!!! | ATTTTTTTATTTGGGTATTT+AGG | + | chr8_4:14726137-14726156 | Msa1315360:intron | 15.0% |
!! | AAATCAAACAGATATAATAT+TGG | + | chr8_4:14726654-14726673 | Msa1315360:intron | 15.0% |
!!! | TTTTTTAAAAATTTCTGCAT+CGG | - | chr8_4:14726961-14726980 | None:intergenic | 15.0% |
!!! | CTTAGTTTTAAATATTTGAT+AGG | + | chr8_4:14727253-14727272 | Msa1315360:intron | 15.0% |
!!! | AAATGTTTAGAATGTTATTT+TGG | - | chr8_4:14727573-14727592 | None:intergenic | 15.0% |
!! | TACAAACTAACAATATATAA+CGG | - | chr8_4:14728648-14728667 | None:intergenic | 15.0% |
!!! | GATAAAAAAAAAAAGTACAA+AGG | - | chr8_4:14728712-14728731 | None:intergenic | 15.0% |
!! | AATTCATAGTTACTATATAA+TGG | + | chr8_4:14728768-14728787 | Msa1315360:three_prime_UTR | 15.0% |
!! | GAAAAATGAAAGAATGTAAA+GGG | - | chr8_4:14726071-14726090 | None:intergenic | 20.0% |
!! | TGAAAAATGAAAGAATGTAA+AGG | - | chr8_4:14726072-14726091 | None:intergenic | 20.0% |
!!! | GAAATCATTTAAAATCTGAA+TGG | + | chr8_4:14726846-14726865 | Msa1315360:intron | 20.0% |
!!! | GTAACTATGAATTATTTCTT+TGG | - | chr8_4:14728761-14728780 | None:intergenic | 20.0% |
!!! | GATTTTGAGAAATTCTCAAT+CGG | - | chr8_4:14725856-14725875 | None:intergenic | 25.0% |
!!! | TTAGGTTTGTTGAATTATTG+TGG | + | chr8_4:14726155-14726174 | Msa1315360:intron | 25.0% |
!!! | TCTTGCTTTTATTCAAATAG+TGG | + | chr8_4:14726194-14726213 | Msa1315360:intron | 25.0% |
!! | CAAATTGCTATTGTATTGTT+CGG | - | chr8_4:14726368-14726387 | None:intergenic | 25.0% |
!!! | TTTTTGTTTTGCTAGTTACA+AGG | + | chr8_4:14726471-14726490 | Msa1315360:intron | 25.0% |
! | GTTTCTAATTCTAAATGTCT+AGG | + | chr8_4:14726527-14726546 | Msa1315360:intron | 25.0% |
! | TTAAAAGGTCTGAAAAGAAT+AGG | - | chr8_4:14726602-14726621 | None:intergenic | 25.0% |
!!! | TGATATTGGTGATATTTTCT+TGG | + | chr8_4:14726742-14726761 | Msa1315360:intron | 25.0% |
!!! | AAAATAGTTTCTTTTTTCCC+TGG | + | chr8_4:14726817-14726836 | Msa1315360:intron | 25.0% |
! | TAAATGATTTCAAAACTCCA+GGG | - | chr8_4:14726837-14726856 | None:intergenic | 25.0% |
! | TTAAATGATTTCAAAACTCC+AGG | - | chr8_4:14726838-14726857 | None:intergenic | 25.0% |
!!! | AAAACTGTTTTTATGGTTTG+AGG | + | chr8_4:14726977-14726996 | Msa1315360:intron | 25.0% |
! | TTTGAGGACAATACTAATAA+TGG | + | chr8_4:14726993-14727012 | Msa1315360:intron | 25.0% |
! | ACTAATAATGGCATTGTAAA+TGG | + | chr8_4:14727005-14727024 | Msa1315360:intron | 25.0% |
! | AATATTTGATAGGCCATTTA+TGG | + | chr8_4:14727263-14727282 | Msa1315360:intron | 25.0% |
!!! | AAAATTGTTGCTTTTTTCCT+TGG | + | chr8_4:14727504-14727523 | Msa1315360:intron | 25.0% |
! | AAAATAGTATGCATCAGATT+CGG | - | chr8_4:14727742-14727761 | None:intergenic | 25.0% |
! | ATTGTTAAAAGGTTGTGATT+TGG | - | chr8_4:14727870-14727889 | None:intergenic | 25.0% |
! | TCTCGAATTTGATTGTTAAA+AGG | - | chr8_4:14727881-14727900 | None:intergenic | 25.0% |
!! | TGAATTTTACCTAGTACTAA+AGG | + | chr8_4:14727957-14727976 | Msa1315360:intron | 25.0% |
!! | AATATTTGATAGGGCATTTA+TGG | + | chr8_4:14728064-14728083 | Msa1315360:intron | 25.0% |
!! | CTTTTTACAGTAAGATTCTT+GGG | + | chr8_4:14728174-14728193 | Msa1315360:intron | 25.0% |
! | TTAATCAAATATCTGTGAAC+TGG | + | chr8_4:14728494-14728513 | Msa1315360:three_prime_UTR | 25.0% |
! | GTATGTATTAGTCAACAAAA+AGG | + | chr8_4:14728792-14728811 | Msa1315360:three_prime_UTR | 25.0% |
AAATTCTCAATCGGAGAAAA+CGG | - | chr8_4:14725847-14725866 | None:intergenic | 30.0% | |
GTTCGGTAATACACTATATT+CGG | - | chr8_4:14726351-14726370 | None:intergenic | 30.0% | |
TCTAGGTGATATGATAGTAT+AGG | + | chr8_4:14726544-14726563 | Msa1315360:intron | 30.0% | |
AAAAATTTCTGCATCGGATT+CGG | - | chr8_4:14726955-14726974 | None:intergenic | 30.0% | |
TCTCAGACTTGATTGTTAAA+AGG | - | chr8_4:14727087-14727106 | None:intergenic | 30.0% | |
! | TGCATTTTACCTAGTACTAA+AGG | + | chr8_4:14727163-14727182 | Msa1315360:intron | 30.0% |
TATTCATAGCATATTGTTCC+AGG | - | chr8_4:14727189-14727208 | None:intergenic | 30.0% | |
!! | TATTCTCTCCTGTTTTGAAT+AGG | + | chr8_4:14727219-14727238 | Msa1315360:intron | 30.0% |
AACAATCTCCTATTCAAAAC+AGG | - | chr8_4:14727230-14727249 | None:intergenic | 30.0% | |
!! | TTTTTCAATGATTGACTCCT+AGG | - | chr8_4:14727321-14727340 | None:intergenic | 30.0% |
! | CTAGCAAGTATTAGTGATTT+TGG | + | chr8_4:14727342-14727361 | Msa1315360:intron | 30.0% |
!!! | TATTAGTGATTTTGGAGTCA+TGG | + | chr8_4:14727350-14727369 | Msa1315360:intron | 30.0% |
!!! | TGTTATTTTGGTTCTAGCAA+TGG | - | chr8_4:14727561-14727580 | None:intergenic | 30.0% |
!! | TCAGAGGCATTGAAAAAATA+TGG | + | chr8_4:14727659-14727678 | Msa1315360:intron | 30.0% |
! | TATTTTTCCTTTTGCCTGAT+TGG | + | chr8_4:14727825-14727844 | Msa1315360:intron | 30.0% |
TAACAATCAAATTCGAGAGA+AGG | + | chr8_4:14727883-14727902 | Msa1315360:intron | 30.0% | |
AAGAATTCCCTATTCAAAAC+AGG | - | chr8_4:14728031-14728050 | None:intergenic | 30.0% | |
! | GCTTTTTACAGTAAGATTCT+TGG | + | chr8_4:14728173-14728192 | Msa1315360:intron | 30.0% |
! | TGTAATTGATGATTCTCTTG+TGG | + | chr8_4:14728235-14728254 | Msa1315360:intron | 30.0% |
!! | GACAACTGCTTTGAAATATT+AGG | + | chr8_4:14728416-14728435 | Msa1315360:CDS | 30.0% |
ACACTTAAAAGACTAAGCTA+TGG | - | chr8_4:14728573-14728592 | None:intergenic | 30.0% | |
AATTCTCAATCGGAGAAAAC+GGG | - | chr8_4:14725846-14725865 | None:intergenic | 35.0% | |
ATCTCAATCATTATGTGCGT+GGG | - | chr8_4:14726232-14726251 | None:intergenic | 35.0% | |
AATCTCAATCATTATGTGCG+TGG | - | chr8_4:14726233-14726252 | None:intergenic | 35.0% | |
TTGATCAGTGTTAACGATAG+TGG | + | chr8_4:14726251-14726270 | Msa1315360:intron | 35.0% | |
GCAATGCTATAGCTGTAAAT+TGG | + | chr8_4:14726313-14726332 | Msa1315360:intron | 35.0% | |
CAAATTTCAACTCGATTGCT+AGG | + | chr8_4:14726767-14726786 | Msa1315360:intron | 35.0% | |
TATTCTTCTTGTTGCCTGAT+TGG | + | chr8_4:14727032-14727051 | Msa1315360:intron | 35.0% | |
TAACAATCAAGTCTGAGAGA+AGG | + | chr8_4:14727089-14727108 | Msa1315360:intron | 35.0% | |
CTAAGAAGTCAGTAAAACCA+AGG | - | chr8_4:14727524-14727543 | None:intergenic | 35.0% | |
AGTCAAAGCAACTGAAAGAT+GGG | - | chr8_4:14727638-14727657 | None:intergenic | 35.0% | |
TAGTCAAAGCAACTGAAAGA+TGG | - | chr8_4:14727639-14727658 | None:intergenic | 35.0% | |
GCTAAGAATAACGTTGTAGA+TGG | + | chr8_4:14727798-14727817 | Msa1315360:intron | 35.0% | |
TCAGGCAAAAGGAAAAATAC+AGG | - | chr8_4:14727824-14727843 | None:intergenic | 35.0% | |
TTTACCTAGTACTAAAGGCT+CGG | + | chr8_4:14727962-14727981 | Msa1315360:intron | 35.0% | |
!! | TATTCTCGCCTGTTTTGAAT+AGG | + | chr8_4:14728020-14728039 | Msa1315360:intron | 35.0% |
!! | ATTCTCGCCTGTTTTGAATA+GGG | + | chr8_4:14728021-14728040 | Msa1315360:intron | 35.0% |
CTGTAAAAAGCCTTTAGATG+TGG | - | chr8_4:14728164-14728183 | None:intergenic | 35.0% | |
GAAGGAAAGTAATTAAGCTG+AGG | + | chr8_4:14728352-14728371 | Msa1315360:CDS | 35.0% | |
TGATTAACTGACCAGAGAAA+AGG | - | chr8_4:14728481-14728500 | None:intergenic | 35.0% | |
GCTTAAGTTCTCATGTTGTT+TGG | + | chr8_4:14728520-14728539 | Msa1315360:three_prime_UTR | 35.0% | |
ATGGTGTTTAACTGAAATCC+TGG | - | chr8_4:14728554-14728573 | None:intergenic | 35.0% | |
GATTAACTATCAGCTGATTG+TGG | + | chr8_4:14728599-14728618 | Msa1315360:three_prime_UTR | 35.0% | |
! | TATAACGGAGTACACAAACT+CGG | - | chr8_4:14728633-14728652 | None:intergenic | 35.0% |
ATCTGATGAATGGTGGTTGT+TGG | - | chr8_4:14725954-14725973 | None:intergenic | 40.0% | |
AACAACCACCATTCATCAGA+TGG | + | chr8_4:14725953-14725972 | Msa1315360:exon | 40.0% | |
TCGTTGTTAGCTATAGCGAT+TGG | + | chr8_4:14726006-14726025 | Msa1315360:CDS | 40.0% | |
CGTTGTTAGCTATAGCGATT+GGG | + | chr8_4:14726007-14726026 | Msa1315360:CDS | 40.0% | |
GTTGTTAGCTATAGCGATTG+GGG | + | chr8_4:14726008-14726027 | Msa1315360:CDS | 40.0% | |
AATCATTATGTGCGTGGGTT+GGG | - | chr8_4:14726227-14726246 | None:intergenic | 40.0% | |
!! | TCAGTGTTAACGATAGTGGA+TGG | + | chr8_4:14726255-14726274 | Msa1315360:intron | 40.0% |
! | GCGGAAAATAGCGATTTGTT+TGG | + | chr8_4:14726277-14726296 | Msa1315360:intron | 40.0% |
! | TGTCAACGTCGGTGTTTAAA+AGG | - | chr8_4:14726617-14726636 | None:intergenic | 40.0% |
ATTACTACCAGTGTCAACGT+CGG | - | chr8_4:14726628-14726647 | None:intergenic | 40.0% | |
! | ATACCTTTGATCAGAAGTGC+CGG | + | chr8_4:14726681-14726700 | Msa1315360:intron | 40.0% |
AATCAGAAGCTATGTAGCAC+CGG | - | chr8_4:14726703-14726722 | None:intergenic | 40.0% | |
AGTCAAAGCAACTGAAAGAC+GGG | - | chr8_4:14726873-14726892 | None:intergenic | 40.0% | |
CAGTCAAAGCAACTGAAAGA+CGG | - | chr8_4:14726874-14726893 | None:intergenic | 40.0% | |
! | TTTCAGTTGCTTTGACTGAG+AGG | + | chr8_4:14726876-14726895 | Msa1315360:intron | 40.0% |
! | TTCAGTTGCTTTGACTGAGA+GGG | + | chr8_4:14726877-14726896 | Msa1315360:intron | 40.0% |
TTTACCTAGTACTAAAGGCC+TGG | + | chr8_4:14727168-14727187 | Msa1315360:intron | 40.0% | |
TTGCCAGCCTAATAAGGTTT+AGG | + | chr8_4:14727294-14727313 | Msa1315360:intron | 40.0% | |
TGCCAGCCTAATAAGGTTTA+GGG | + | chr8_4:14727295-14727314 | Msa1315360:intron | 40.0% | |
! | TCAGTTGCTTTGACTATCAG+AGG | + | chr8_4:14727643-14727662 | Msa1315360:intron | 40.0% |
TTGCCACATCAGAATTGTTC+TGG | - | chr8_4:14727686-14727705 | None:intergenic | 40.0% | |
AGATTCGGAGTGTGATTACA+TGG | - | chr8_4:14727727-14727746 | None:intergenic | 40.0% | |
TTGGAAGTGACATGAAGTCA+CGG | - | chr8_4:14727851-14727870 | None:intergenic | 40.0% | |
! | GACAATCAGAAGTAGCTTTG+TGG | - | chr8_4:14727935-14727954 | None:intergenic | 40.0% |
TATTCTTCACACACACCACT+CGG | - | chr8_4:14728281-14728300 | None:intergenic | 40.0% | |
AGTGGTGTGTGTGAAGAATA+TGG | + | chr8_4:14728281-14728300 | Msa1315360:CDS | 40.0% | |
GTGTGTGAAGAATATGGATC+CGG | + | chr8_4:14728287-14728306 | Msa1315360:CDS | 40.0% | |
TTATCTTCGCTAGAGAACCA+TGG | + | chr8_4:14728727-14728746 | Msa1315360:three_prime_UTR | 40.0% | |
TTTCTTTGGCGAGTAAACCA+TGG | - | chr8_4:14728747-14728766 | None:intergenic | 40.0% | |
GATGAATGGTGGTTGTTGGA+CGG | - | chr8_4:14725950-14725969 | None:intergenic | 45.0% | |
CAATGCCATCTGATGAATGG+TGG | - | chr8_4:14725961-14725980 | None:intergenic | 45.0% | |
TCGCAATGCCATCTGATGAA+TGG | - | chr8_4:14725964-14725983 | None:intergenic | 45.0% | |
ATTCATCAGATGGCATTGCG+AGG | + | chr8_4:14725963-14725982 | Msa1315360:exon | 45.0% | |
CAATCATTATGTGCGTGGGT+TGG | - | chr8_4:14726228-14726247 | None:intergenic | 45.0% | |
!! | GTGTTAACGATAGTGGATGG+CGG | + | chr8_4:14726258-14726277 | Msa1315360:intron | 45.0% |
TTAAACACCGACGTTGACAC+TGG | + | chr8_4:14726618-14726637 | Msa1315360:intron | 45.0% | |
! | TCAGTTGCTTTGACTGAGAG+GGG | + | chr8_4:14726878-14726897 | Msa1315360:intron | 45.0% |
GGTCAAGAACAATTCTGCTG+TGG | + | chr8_4:14726914-14726933 | Msa1315360:intron | 45.0% | |
GAACAATTCTGCTGTGGCAA+CGG | + | chr8_4:14726920-14726939 | Msa1315360:intron | 45.0% | |
TGTTCCAGGCCTTTAGTACT+AGG | - | chr8_4:14727175-14727194 | None:intergenic | 45.0% | |
GGCAAATGCGACTCCATAAA+TGG | - | chr8_4:14727279-14727298 | None:intergenic | 45.0% | |
TCGCATTTGCCAGCCTAATA+AGG | + | chr8_4:14727288-14727307 | Msa1315360:intron | 45.0% | |
CCTAGGCCCTAAACCTTATT+AGG | - | chr8_4:14727304-14727323 | None:intergenic | 45.0% | |
! | CCTAATAAGGTTTAGGGCCT+AGG | + | chr8_4:14727301-14727320 | Msa1315360:intron | 45.0% |
GAAGCCACTTGAAACCTGAA+TGG | + | chr8_4:14727611-14727630 | Msa1315360:intron | 45.0% | |
ACTGAAAGATGGGTCCATTC+AGG | - | chr8_4:14727628-14727647 | None:intergenic | 45.0% | |
GGTCCAGAACAATTCTGATG+TGG | + | chr8_4:14727680-14727699 | Msa1315360:intron | 45.0% | |
ACTTCCGAGCCTTTAGTACT+AGG | - | chr8_4:14727969-14727988 | None:intergenic | 45.0% | |
AGTACTAAAGGCTCGGAAGT+TGG | + | chr8_4:14727969-14727988 | Msa1315360:intron | 45.0% | |
GTGGACACTGAAATGATTCG+TGG | + | chr8_4:14728131-14728150 | Msa1315360:CDS | 45.0% | |
TGGTCAGCATCCACATCTAA+AGG | + | chr8_4:14728151-14728170 | Msa1315360:CDS | 45.0% | |
AGAGAACCATAATGACCGAG+TGG | + | chr8_4:14728263-14728282 | Msa1315360:intron | 45.0% | |
!! | GCATGCAGAAGTATCTCTTC+CGG | - | chr8_4:14728309-14728328 | None:intergenic | 45.0% |
AGATACTTCTGCATGCAACC+AGG | + | chr8_4:14728313-14728332 | Msa1315360:CDS | 45.0% | |
! | GGATCGACTTAGCACTACTA+CGG | - | chr8_4:14728460-14728479 | None:intergenic | 45.0% |
! | GCTAAGTCGATCCTTTTCTC+TGG | + | chr8_4:14728467-14728486 | Msa1315360:three_prime_UTR | 45.0% |
AGATGGCATTGCGAGGAGTT+TGG | + | chr8_4:14725970-14725989 | Msa1315360:exon | 50.0% | |
GTTAGCTATAGCGATTGGGG+TGG | + | chr8_4:14726011-14726030 | Msa1315360:CDS | 50.0% | |
!! | GTGGAAGTAGCAGAGGCATT+AGG | + | chr8_4:14726030-14726049 | Msa1315360:CDS | 50.0% |
!! | GAGAGGGGCGTTGAAAGAAT+TGG | + | chr8_4:14726893-14726912 | Msa1315360:intron | 50.0% |
ACCTGAAGTCACAGCCAATC+AGG | - | chr8_4:14727049-14727068 | None:intergenic | 50.0% | |
AACCACAACGCTCTTTCTGC+TGG | + | chr8_4:14727136-14727155 | Msa1315360:intron | 50.0% | |
!! | AACCAGCAGAAAGAGCGTTG+TGG | - | chr8_4:14727141-14727160 | None:intergenic | 50.0% |
GGCCCTAAACCTTATTAGGC+TGG | - | chr8_4:14727300-14727319 | None:intergenic | 50.0% | |
! | GGGTCCATTCAGGTTTCAAG+TGG | - | chr8_4:14727618-14727637 | None:intergenic | 50.0% |
ACATGAAGTCACGGCCAATC+AGG | - | chr8_4:14727842-14727861 | None:intergenic | 50.0% | |
GTCGCATTTGCCAGCGTTTA+AGG | + | chr8_4:14728088-14728107 | Msa1315360:CDS | 50.0% | |
GCATTTGCCAGCGTTTAAGG+AGG | + | chr8_4:14728091-14728110 | Msa1315360:CDS | 50.0% | |
CAGTGTCCACCTCTAACTGA+GGG | - | chr8_4:14728121-14728140 | None:intergenic | 50.0% | |
TCAGTGTCCACCTCTAACTG+AGG | - | chr8_4:14728122-14728141 | None:intergenic | 50.0% | |
CACACACCACTCGGTCATTA+TGG | - | chr8_4:14728272-14728291 | None:intergenic | 50.0% | |
TTCTGCATGCAACCAGGCTA+AGG | + | chr8_4:14728319-14728338 | Msa1315360:CDS | 50.0% | |
AACCAGGCTAAGGAATGCAC+TGG | + | chr8_4:14728329-14728348 | Msa1315360:CDS | 50.0% | |
ACCAGGCTAAGGAATGCACT+GGG | + | chr8_4:14728330-14728349 | Msa1315360:CDS | 50.0% | |
TCCATGTACCTTGCACGCTA+GGG | - | chr8_4:14728398-14728417 | None:intergenic | 50.0% | |
! | TGTTGTTTGGCGCTATTGCC+AGG | + | chr8_4:14728533-14728552 | Msa1315360:three_prime_UTR | 50.0% |
GATTGGGGTGGAAGTAGCAG+AGG | + | chr8_4:14726023-14726042 | Msa1315360:CDS | 55.0% | |
! | GCACCGGCACTTCTGATCAA+AGG | - | chr8_4:14726687-14726706 | None:intergenic | 55.0% |
! | GCCTGATTGGCTGTGACTTC+AGG | + | chr8_4:14727045-14727064 | Msa1315360:intron | 55.0% |
GTCACGGCCAATCAGGCAAA+AGG | - | chr8_4:14727835-14727854 | None:intergenic | 55.0% | |
TCCCAGTGCATTCCTTAGCC+TGG | - | chr8_4:14728334-14728353 | None:intergenic | 55.0% | |
GGCTAAGGAATGCACTGGGA+AGG | + | chr8_4:14728334-14728353 | Msa1315360:CDS | 55.0% | |
ACCAAACACCCTAGCGTGCA+AGG | + | chr8_4:14728387-14728406 | Msa1315360:CDS | 55.0% | |
! | ACCTTGCACGCTAGGGTGTT+TGG | - | chr8_4:14728391-14728410 | None:intergenic | 55.0% |
ACCCTAGCGTGCAAGGTACA+TGG | + | chr8_4:14728394-14728413 | Msa1315360:CDS | 55.0% | |
GTCCATGTACCTTGCACGCT+AGG | - | chr8_4:14728399-14728418 | None:intergenic | 55.0% | |
GTTGGACGGCTGACGGTGAT+CGG | - | chr8_4:14725936-14725955 | None:intergenic | 60.0% | |
GGTGGTTGTTGGACGGCTGA+CGG | - | chr8_4:14725943-14725962 | None:intergenic | 60.0% | |
GGGTTCGCCTCCTTAAACGC+TGG | - | chr8_4:14728101-14728120 | None:intergenic | 60.0% | |
GGAGGCGAACCCTCAGTTAG+AGG | + | chr8_4:14728109-14728128 | Msa1315360:CDS | 60.0% | |
GGCGAACCCTCAGTTAGAGG+TGG | + | chr8_4:14728112-14728131 | Msa1315360:CDS | 60.0% | |
TGAGCTGTGCGGCGGCGTTA+GGG | - | chr8_4:14725899-14725918 | None:intergenic | 65.0% | |
AGGCTCTGTGAGCTGTGCGG+CGG | - | chr8_4:14725907-14725926 | None:intergenic | 65.0% | |
CGGAGGCTCTGTGAGCTGTG+CGG | - | chr8_4:14725910-14725929 | None:intergenic | 65.0% | |
CTGACGGTGATCGGAGACGG+AGG | - | chr8_4:14725927-14725946 | None:intergenic | 65.0% | |
CGGCTGACGGTGATCGGAGA+CGG | - | chr8_4:14725930-14725949 | None:intergenic | 65.0% | |
GTGAGCTGTGCGGCGGCGTT+AGG | - | chr8_4:14725900-14725919 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 14725709 | 14728831 | 14725709 | ID=Msa1315360;Name=Msa1315360 |
chr8_4 | mRNA | 14725709 | 14728831 | 14725709 | ID=Msa1315360-mRNA-1;Parent=Msa1315360;Name=Msa1315360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=263|1|1|1|1|1|3|394|119 |
chr8_4 | exon | 14725709 | 14726051 | 14725709 | ID=Msa1315360-mRNA-1:exon:5554;Parent=Msa1315360-mRNA-1 |
chr8_4 | exon | 14728076 | 14728182 | 14728076 | ID=Msa1315360-mRNA-1:exon:5555;Parent=Msa1315360-mRNA-1 |
chr8_4 | exon | 14728265 | 14728831 | 14728265 | ID=Msa1315360-mRNA-1:exon:5556;Parent=Msa1315360-mRNA-1 |
chr8_4 | five_prime_UTR | 14725709 | 14725971 | 14725709 | ID=Msa1315360-mRNA-1:five_prime_utr;Parent=Msa1315360-mRNA-1 |
chr8_4 | CDS | 14725972 | 14726051 | 14725972 | ID=Msa1315360-mRNA-1:cds;Parent=Msa1315360-mRNA-1 |
chr8_4 | CDS | 14728076 | 14728182 | 14728076 | ID=Msa1315360-mRNA-1:cds;Parent=Msa1315360-mRNA-1 |
chr8_4 | CDS | 14728265 | 14728437 | 14728265 | ID=Msa1315360-mRNA-1:cds;Parent=Msa1315360-mRNA-1 |
chr8_4 | three_prime_UTR | 14728438 | 14728831 | 14728438 | ID=Msa1315360-mRNA-1:three_prime_utr;Parent=Msa1315360-mRNA-1 |
Gene Sequence |
Protein sequence |