AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1315360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315360 MtrunA17_Chr8g0344921 99.160 119 1 0 1 119 1 119 2.01e-87 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315360 AT3G59650.1 83.193 119 20 0 1 119 1 119 7.54e-74 215
Msa1315360 AT3G59650.2 67.808 146 20 1 1 119 1 146 5.08e-68 201

Find 68 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTTGATAGGGCATTTA+TGG 0.120191 8_4:+14728064 Msa1315360:intron
GTCGCATTTGCCAGCGTTTA+AGG 0.191698 8_4:+14728088 Msa1315360:CDS
CACACACCACTCGGTCATTA+TGG 0.253183 8_4:-14728269 None:intergenic
GTGAGCTGTGCGGCGGCGTT+AGG 0.286266 8_4:-14725897 None:intergenic
GTAACTATGAATTATTTCTT+TGG 0.303962 8_4:-14728758 None:intergenic
GACAACTGCTTTGAAATATT+AGG 0.339185 8_4:+14728416 Msa1315360:CDS
AGATGGCATTGCGAGGAGTT+TGG 0.367673 8_4:+14725970 Msa1315360:exon
CGTTGTTAGCTATAGCGATT+GGG 0.368754 8_4:+14726007 Msa1315360:CDS
TCCCAGTGCATTCCTTAGCC+TGG 0.373420 8_4:-14728331 None:intergenic
AATTCATAGTTACTATATAA+TGG 0.374235 8_4:+14728768 Msa1315360:three_prime_UTR
AGTGGTGTGTGTGAAGAATA+TGG 0.393785 8_4:+14728281 Msa1315360:CDS
AAAAGGTAGAAACTATATAA+TGG 0.394205 8_4:+14728809 Msa1315360:three_prime_UTR
ACCTTGCACGCTAGGGTGTT+TGG 0.399445 8_4:-14728388 None:intergenic
AAATTCTCAATCGGAGAAAA+CGG 0.414689 8_4:-14725844 None:intergenic
TGAGCTGTGCGGCGGCGTTA+GGG 0.416592 8_4:-14725896 None:intergenic
TGTTGTTTGGCGCTATTGCC+AGG 0.418369 8_4:+14728533 Msa1315360:three_prime_UTR
GCTTAAGTTCTCATGTTGTT+TGG 0.421272 8_4:+14728520 Msa1315360:three_prime_UTR
TTAATCAAATATCTGTGAAC+TGG 0.439984 8_4:+14728494 Msa1315360:three_prime_UTR
GTCCATGTACCTTGCACGCT+AGG 0.449503 8_4:-14728396 None:intergenic
GTGGAAGTAGCAGAGGCATT+AGG 0.465860 8_4:+14726030 Msa1315360:CDS
GCATGCAGAAGTATCTCTTC+CGG 0.466200 8_4:-14728306 None:intergenic
GGAGGCGAACCCTCAGTTAG+AGG 0.466422 8_4:+14728109 Msa1315360:CDS
GTATGTATTAGTCAACAAAA+AGG 0.475742 8_4:+14728792 Msa1315360:three_prime_UTR
AATTCTCAATCGGAGAAAAC+GGG 0.485540 8_4:-14725843 None:intergenic
TGATTAACTGACCAGAGAAA+AGG 0.500162 8_4:-14728478 None:intergenic
ATCTGATGAATGGTGGTTGT+TGG 0.508884 8_4:-14725951 None:intergenic
ACCCTAGCGTGCAAGGTACA+TGG 0.511271 8_4:+14728394 Msa1315360:CDS
TCGTTGTTAGCTATAGCGAT+TGG 0.511918 8_4:+14726006 Msa1315360:CDS
TGGTCAGCATCCACATCTAA+AGG 0.514097 8_4:+14728151 Msa1315360:CDS
TTCTGCATGCAACCAGGCTA+AGG 0.518615 8_4:+14728319 Msa1315360:CDS
AACCAGGCTAAGGAATGCAC+TGG 0.528014 8_4:+14728329 Msa1315360:CDS
TCGCAATGCCATCTGATGAA+TGG 0.539991 8_4:-14725961 None:intergenic
TACAAACTAACAATATATAA+CGG 0.542968 8_4:-14728645 None:intergenic
ATGGTGTTTAACTGAAATCC+TGG 0.546587 8_4:-14728551 None:intergenic
GTTGGACGGCTGACGGTGAT+CGG 0.546998 8_4:-14725933 None:intergenic
GGGTTCGCCTCCTTAAACGC+TGG 0.551134 8_4:-14728098 None:intergenic
TCCATGTACCTTGCACGCTA+GGG 0.551964 8_4:-14728395 None:intergenic
GATTAACTATCAGCTGATTG+TGG 0.553497 8_4:+14728599 Msa1315360:three_prime_UTR
CGGCTGACGGTGATCGGAGA+CGG 0.561368 8_4:-14725927 None:intergenic
ACCAAACACCCTAGCGTGCA+AGG 0.562815 8_4:+14728387 Msa1315360:CDS
TCAGTGTCCACCTCTAACTG+AGG 0.586148 8_4:-14728119 None:intergenic
ACACTTAAAAGACTAAGCTA+TGG 0.587092 8_4:-14728570 None:intergenic
GTGTGTGAAGAATATGGATC+CGG 0.590195 8_4:+14728287 Msa1315360:CDS
GGCTAAGGAATGCACTGGGA+AGG 0.590269 8_4:+14728334 Msa1315360:CDS
AACAACCACCATTCATCAGA+TGG 0.591625 8_4:+14725953 Msa1315360:exon
GTGGACACTGAAATGATTCG+TGG 0.592382 8_4:+14728131 Msa1315360:CDS
GATGAATGGTGGTTGTTGGA+CGG 0.594620 8_4:-14725947 None:intergenic
AGATACTTCTGCATGCAACC+AGG 0.597112 8_4:+14728313 Msa1315360:CDS
CAGTGTCCACCTCTAACTGA+GGG 0.607705 8_4:-14728118 None:intergenic
GGATCGACTTAGCACTACTA+CGG 0.608740 8_4:-14728457 None:intergenic
TATTCTTCACACACACCACT+CGG 0.614073 8_4:-14728278 None:intergenic
GGCGAACCCTCAGTTAGAGG+TGG 0.624239 8_4:+14728112 Msa1315360:CDS
GGTGGTTGTTGGACGGCTGA+CGG 0.631122 8_4:-14725940 None:intergenic
TTTCTTTGGCGAGTAAACCA+TGG 0.636878 8_4:-14728744 None:intergenic
TTATCTTCGCTAGAGAACCA+TGG 0.637249 8_4:+14728727 Msa1315360:three_prime_UTR
GTTGTTAGCTATAGCGATTG+GGG 0.643269 8_4:+14726008 Msa1315360:CDS
GCATTTGCCAGCGTTTAAGG+AGG 0.645640 8_4:+14728091 Msa1315360:CDS
GAAGGAAAGTAATTAAGCTG+AGG 0.646557 8_4:+14728352 Msa1315360:CDS
ACCAGGCTAAGGAATGCACT+GGG 0.650150 8_4:+14728330 Msa1315360:CDS
AGGCTCTGTGAGCTGTGCGG+CGG 0.653718 8_4:-14725904 None:intergenic
ATTCATCAGATGGCATTGCG+AGG 0.654895 8_4:+14725963 Msa1315360:exon
GATTGGGGTGGAAGTAGCAG+AGG 0.657242 8_4:+14726023 Msa1315360:CDS
GTTAGCTATAGCGATTGGGG+TGG 0.672048 8_4:+14726011 Msa1315360:CDS
TATAACGGAGTACACAAACT+CGG 0.675147 8_4:-14728630 None:intergenic
CAATGCCATCTGATGAATGG+TGG 0.680972 8_4:-14725958 None:intergenic
CTGACGGTGATCGGAGACGG+AGG 0.714407 8_4:-14725924 None:intergenic
CGGAGGCTCTGTGAGCTGTG+CGG 0.730038 8_4:-14725907 None:intergenic
AGAGAACCATAATGACCGAG+TGG 0.735330 8_4:+14728263 Msa1315360:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAATTAAAAGAGT+TGG + chr8_4:14725809-14725828 Msa1315360:five_prime_UTR 10.0%
!!! TATTTTTAATTAAAAGAGTT+GGG + chr8_4:14725810-14725829 Msa1315360:five_prime_UTR 10.0%
!! ATAAAAAAATGAAAACTTTA+GGG - chr8_4:14726127-14726146 None:intergenic 10.0%
!! AATAAAAAAATGAAAACTTT+AGG - chr8_4:14726128-14726147 None:intergenic 10.0%
!!! AAAGTTTTCATTTTTTTATT+TGG + chr8_4:14726128-14726147 Msa1315360:intron 10.0%
!!! AAGTTTTCATTTTTTTATTT+GGG + chr8_4:14726129-14726148 Msa1315360:intron 10.0%
!!! AATTTTATGAATTATGATAT+TGG + chr8_4:14726728-14726747 Msa1315360:intron 10.0%
!!! TTTTTAAAAAACTGTTTTTA+TGG + chr8_4:14726970-14726989 Msa1315360:intron 10.0%
!!! TTTTTTTAAAACTGTTTTTA+TGG + chr8_4:14727763-14727782 Msa1315360:intron 10.0%
!!! TTTAGTTTTAAATATTTGAT+AGG + chr8_4:14728054-14728073 Msa1315360:intron 10.0%
!!! TTAGTTTTAAATATTTGATA+GGG + chr8_4:14727254-14727273 Msa1315360:intron 10.0%
!!! ATTTTTTTATTTGGGTATTT+AGG + chr8_4:14726137-14726156 Msa1315360:intron 15.0%
!! AAATCAAACAGATATAATAT+TGG + chr8_4:14726654-14726673 Msa1315360:intron 15.0%
!!! TTTTTTAAAAATTTCTGCAT+CGG - chr8_4:14726961-14726980 None:intergenic 15.0%
!!! CTTAGTTTTAAATATTTGAT+AGG + chr8_4:14727253-14727272 Msa1315360:intron 15.0%
!!! AAATGTTTAGAATGTTATTT+TGG - chr8_4:14727573-14727592 None:intergenic 15.0%
!! TACAAACTAACAATATATAA+CGG - chr8_4:14728648-14728667 None:intergenic 15.0%
!!! GATAAAAAAAAAAAGTACAA+AGG - chr8_4:14728712-14728731 None:intergenic 15.0%
!! AATTCATAGTTACTATATAA+TGG + chr8_4:14728768-14728787 Msa1315360:three_prime_UTR 15.0%
!! GAAAAATGAAAGAATGTAAA+GGG - chr8_4:14726071-14726090 None:intergenic 20.0%
!! TGAAAAATGAAAGAATGTAA+AGG - chr8_4:14726072-14726091 None:intergenic 20.0%
!!! GAAATCATTTAAAATCTGAA+TGG + chr8_4:14726846-14726865 Msa1315360:intron 20.0%
!!! GTAACTATGAATTATTTCTT+TGG - chr8_4:14728761-14728780 None:intergenic 20.0%
!!! GATTTTGAGAAATTCTCAAT+CGG - chr8_4:14725856-14725875 None:intergenic 25.0%
!!! TTAGGTTTGTTGAATTATTG+TGG + chr8_4:14726155-14726174 Msa1315360:intron 25.0%
!!! TCTTGCTTTTATTCAAATAG+TGG + chr8_4:14726194-14726213 Msa1315360:intron 25.0%
!! CAAATTGCTATTGTATTGTT+CGG - chr8_4:14726368-14726387 None:intergenic 25.0%
!!! TTTTTGTTTTGCTAGTTACA+AGG + chr8_4:14726471-14726490 Msa1315360:intron 25.0%
! GTTTCTAATTCTAAATGTCT+AGG + chr8_4:14726527-14726546 Msa1315360:intron 25.0%
! TTAAAAGGTCTGAAAAGAAT+AGG - chr8_4:14726602-14726621 None:intergenic 25.0%
!!! TGATATTGGTGATATTTTCT+TGG + chr8_4:14726742-14726761 Msa1315360:intron 25.0%
!!! AAAATAGTTTCTTTTTTCCC+TGG + chr8_4:14726817-14726836 Msa1315360:intron 25.0%
! TAAATGATTTCAAAACTCCA+GGG - chr8_4:14726837-14726856 None:intergenic 25.0%
! TTAAATGATTTCAAAACTCC+AGG - chr8_4:14726838-14726857 None:intergenic 25.0%
!!! AAAACTGTTTTTATGGTTTG+AGG + chr8_4:14726977-14726996 Msa1315360:intron 25.0%
! TTTGAGGACAATACTAATAA+TGG + chr8_4:14726993-14727012 Msa1315360:intron 25.0%
! ACTAATAATGGCATTGTAAA+TGG + chr8_4:14727005-14727024 Msa1315360:intron 25.0%
! AATATTTGATAGGCCATTTA+TGG + chr8_4:14727263-14727282 Msa1315360:intron 25.0%
!!! AAAATTGTTGCTTTTTTCCT+TGG + chr8_4:14727504-14727523 Msa1315360:intron 25.0%
! AAAATAGTATGCATCAGATT+CGG - chr8_4:14727742-14727761 None:intergenic 25.0%
! ATTGTTAAAAGGTTGTGATT+TGG - chr8_4:14727870-14727889 None:intergenic 25.0%
! TCTCGAATTTGATTGTTAAA+AGG - chr8_4:14727881-14727900 None:intergenic 25.0%
!! TGAATTTTACCTAGTACTAA+AGG + chr8_4:14727957-14727976 Msa1315360:intron 25.0%
!! AATATTTGATAGGGCATTTA+TGG + chr8_4:14728064-14728083 Msa1315360:intron 25.0%
!! CTTTTTACAGTAAGATTCTT+GGG + chr8_4:14728174-14728193 Msa1315360:intron 25.0%
! TTAATCAAATATCTGTGAAC+TGG + chr8_4:14728494-14728513 Msa1315360:three_prime_UTR 25.0%
! GTATGTATTAGTCAACAAAA+AGG + chr8_4:14728792-14728811 Msa1315360:three_prime_UTR 25.0%
AAATTCTCAATCGGAGAAAA+CGG - chr8_4:14725847-14725866 None:intergenic 30.0%
GTTCGGTAATACACTATATT+CGG - chr8_4:14726351-14726370 None:intergenic 30.0%
TCTAGGTGATATGATAGTAT+AGG + chr8_4:14726544-14726563 Msa1315360:intron 30.0%
AAAAATTTCTGCATCGGATT+CGG - chr8_4:14726955-14726974 None:intergenic 30.0%
TCTCAGACTTGATTGTTAAA+AGG - chr8_4:14727087-14727106 None:intergenic 30.0%
! TGCATTTTACCTAGTACTAA+AGG + chr8_4:14727163-14727182 Msa1315360:intron 30.0%
TATTCATAGCATATTGTTCC+AGG - chr8_4:14727189-14727208 None:intergenic 30.0%
!! TATTCTCTCCTGTTTTGAAT+AGG + chr8_4:14727219-14727238 Msa1315360:intron 30.0%
AACAATCTCCTATTCAAAAC+AGG - chr8_4:14727230-14727249 None:intergenic 30.0%
!! TTTTTCAATGATTGACTCCT+AGG - chr8_4:14727321-14727340 None:intergenic 30.0%
! CTAGCAAGTATTAGTGATTT+TGG + chr8_4:14727342-14727361 Msa1315360:intron 30.0%
!!! TATTAGTGATTTTGGAGTCA+TGG + chr8_4:14727350-14727369 Msa1315360:intron 30.0%
!!! TGTTATTTTGGTTCTAGCAA+TGG - chr8_4:14727561-14727580 None:intergenic 30.0%
!! TCAGAGGCATTGAAAAAATA+TGG + chr8_4:14727659-14727678 Msa1315360:intron 30.0%
! TATTTTTCCTTTTGCCTGAT+TGG + chr8_4:14727825-14727844 Msa1315360:intron 30.0%
TAACAATCAAATTCGAGAGA+AGG + chr8_4:14727883-14727902 Msa1315360:intron 30.0%
AAGAATTCCCTATTCAAAAC+AGG - chr8_4:14728031-14728050 None:intergenic 30.0%
! GCTTTTTACAGTAAGATTCT+TGG + chr8_4:14728173-14728192 Msa1315360:intron 30.0%
! TGTAATTGATGATTCTCTTG+TGG + chr8_4:14728235-14728254 Msa1315360:intron 30.0%
!! GACAACTGCTTTGAAATATT+AGG + chr8_4:14728416-14728435 Msa1315360:CDS 30.0%
ACACTTAAAAGACTAAGCTA+TGG - chr8_4:14728573-14728592 None:intergenic 30.0%
AATTCTCAATCGGAGAAAAC+GGG - chr8_4:14725846-14725865 None:intergenic 35.0%
ATCTCAATCATTATGTGCGT+GGG - chr8_4:14726232-14726251 None:intergenic 35.0%
AATCTCAATCATTATGTGCG+TGG - chr8_4:14726233-14726252 None:intergenic 35.0%
TTGATCAGTGTTAACGATAG+TGG + chr8_4:14726251-14726270 Msa1315360:intron 35.0%
GCAATGCTATAGCTGTAAAT+TGG + chr8_4:14726313-14726332 Msa1315360:intron 35.0%
CAAATTTCAACTCGATTGCT+AGG + chr8_4:14726767-14726786 Msa1315360:intron 35.0%
TATTCTTCTTGTTGCCTGAT+TGG + chr8_4:14727032-14727051 Msa1315360:intron 35.0%
TAACAATCAAGTCTGAGAGA+AGG + chr8_4:14727089-14727108 Msa1315360:intron 35.0%
CTAAGAAGTCAGTAAAACCA+AGG - chr8_4:14727524-14727543 None:intergenic 35.0%
AGTCAAAGCAACTGAAAGAT+GGG - chr8_4:14727638-14727657 None:intergenic 35.0%
TAGTCAAAGCAACTGAAAGA+TGG - chr8_4:14727639-14727658 None:intergenic 35.0%
GCTAAGAATAACGTTGTAGA+TGG + chr8_4:14727798-14727817 Msa1315360:intron 35.0%
TCAGGCAAAAGGAAAAATAC+AGG - chr8_4:14727824-14727843 None:intergenic 35.0%
TTTACCTAGTACTAAAGGCT+CGG + chr8_4:14727962-14727981 Msa1315360:intron 35.0%
!! TATTCTCGCCTGTTTTGAAT+AGG + chr8_4:14728020-14728039 Msa1315360:intron 35.0%
!! ATTCTCGCCTGTTTTGAATA+GGG + chr8_4:14728021-14728040 Msa1315360:intron 35.0%
CTGTAAAAAGCCTTTAGATG+TGG - chr8_4:14728164-14728183 None:intergenic 35.0%
GAAGGAAAGTAATTAAGCTG+AGG + chr8_4:14728352-14728371 Msa1315360:CDS 35.0%
TGATTAACTGACCAGAGAAA+AGG - chr8_4:14728481-14728500 None:intergenic 35.0%
GCTTAAGTTCTCATGTTGTT+TGG + chr8_4:14728520-14728539 Msa1315360:three_prime_UTR 35.0%
ATGGTGTTTAACTGAAATCC+TGG - chr8_4:14728554-14728573 None:intergenic 35.0%
GATTAACTATCAGCTGATTG+TGG + chr8_4:14728599-14728618 Msa1315360:three_prime_UTR 35.0%
! TATAACGGAGTACACAAACT+CGG - chr8_4:14728633-14728652 None:intergenic 35.0%
ATCTGATGAATGGTGGTTGT+TGG - chr8_4:14725954-14725973 None:intergenic 40.0%
AACAACCACCATTCATCAGA+TGG + chr8_4:14725953-14725972 Msa1315360:exon 40.0%
TCGTTGTTAGCTATAGCGAT+TGG + chr8_4:14726006-14726025 Msa1315360:CDS 40.0%
CGTTGTTAGCTATAGCGATT+GGG + chr8_4:14726007-14726026 Msa1315360:CDS 40.0%
GTTGTTAGCTATAGCGATTG+GGG + chr8_4:14726008-14726027 Msa1315360:CDS 40.0%
AATCATTATGTGCGTGGGTT+GGG - chr8_4:14726227-14726246 None:intergenic 40.0%
!! TCAGTGTTAACGATAGTGGA+TGG + chr8_4:14726255-14726274 Msa1315360:intron 40.0%
! GCGGAAAATAGCGATTTGTT+TGG + chr8_4:14726277-14726296 Msa1315360:intron 40.0%
! TGTCAACGTCGGTGTTTAAA+AGG - chr8_4:14726617-14726636 None:intergenic 40.0%
ATTACTACCAGTGTCAACGT+CGG - chr8_4:14726628-14726647 None:intergenic 40.0%
! ATACCTTTGATCAGAAGTGC+CGG + chr8_4:14726681-14726700 Msa1315360:intron 40.0%
AATCAGAAGCTATGTAGCAC+CGG - chr8_4:14726703-14726722 None:intergenic 40.0%
AGTCAAAGCAACTGAAAGAC+GGG - chr8_4:14726873-14726892 None:intergenic 40.0%
CAGTCAAAGCAACTGAAAGA+CGG - chr8_4:14726874-14726893 None:intergenic 40.0%
! TTTCAGTTGCTTTGACTGAG+AGG + chr8_4:14726876-14726895 Msa1315360:intron 40.0%
! TTCAGTTGCTTTGACTGAGA+GGG + chr8_4:14726877-14726896 Msa1315360:intron 40.0%
TTTACCTAGTACTAAAGGCC+TGG + chr8_4:14727168-14727187 Msa1315360:intron 40.0%
TTGCCAGCCTAATAAGGTTT+AGG + chr8_4:14727294-14727313 Msa1315360:intron 40.0%
TGCCAGCCTAATAAGGTTTA+GGG + chr8_4:14727295-14727314 Msa1315360:intron 40.0%
! TCAGTTGCTTTGACTATCAG+AGG + chr8_4:14727643-14727662 Msa1315360:intron 40.0%
TTGCCACATCAGAATTGTTC+TGG - chr8_4:14727686-14727705 None:intergenic 40.0%
AGATTCGGAGTGTGATTACA+TGG - chr8_4:14727727-14727746 None:intergenic 40.0%
TTGGAAGTGACATGAAGTCA+CGG - chr8_4:14727851-14727870 None:intergenic 40.0%
! GACAATCAGAAGTAGCTTTG+TGG - chr8_4:14727935-14727954 None:intergenic 40.0%
TATTCTTCACACACACCACT+CGG - chr8_4:14728281-14728300 None:intergenic 40.0%
AGTGGTGTGTGTGAAGAATA+TGG + chr8_4:14728281-14728300 Msa1315360:CDS 40.0%
GTGTGTGAAGAATATGGATC+CGG + chr8_4:14728287-14728306 Msa1315360:CDS 40.0%
TTATCTTCGCTAGAGAACCA+TGG + chr8_4:14728727-14728746 Msa1315360:three_prime_UTR 40.0%
TTTCTTTGGCGAGTAAACCA+TGG - chr8_4:14728747-14728766 None:intergenic 40.0%
GATGAATGGTGGTTGTTGGA+CGG - chr8_4:14725950-14725969 None:intergenic 45.0%
CAATGCCATCTGATGAATGG+TGG - chr8_4:14725961-14725980 None:intergenic 45.0%
TCGCAATGCCATCTGATGAA+TGG - chr8_4:14725964-14725983 None:intergenic 45.0%
ATTCATCAGATGGCATTGCG+AGG + chr8_4:14725963-14725982 Msa1315360:exon 45.0%
CAATCATTATGTGCGTGGGT+TGG - chr8_4:14726228-14726247 None:intergenic 45.0%
!! GTGTTAACGATAGTGGATGG+CGG + chr8_4:14726258-14726277 Msa1315360:intron 45.0%
TTAAACACCGACGTTGACAC+TGG + chr8_4:14726618-14726637 Msa1315360:intron 45.0%
! TCAGTTGCTTTGACTGAGAG+GGG + chr8_4:14726878-14726897 Msa1315360:intron 45.0%
GGTCAAGAACAATTCTGCTG+TGG + chr8_4:14726914-14726933 Msa1315360:intron 45.0%
GAACAATTCTGCTGTGGCAA+CGG + chr8_4:14726920-14726939 Msa1315360:intron 45.0%
TGTTCCAGGCCTTTAGTACT+AGG - chr8_4:14727175-14727194 None:intergenic 45.0%
GGCAAATGCGACTCCATAAA+TGG - chr8_4:14727279-14727298 None:intergenic 45.0%
TCGCATTTGCCAGCCTAATA+AGG + chr8_4:14727288-14727307 Msa1315360:intron 45.0%
CCTAGGCCCTAAACCTTATT+AGG - chr8_4:14727304-14727323 None:intergenic 45.0%
! CCTAATAAGGTTTAGGGCCT+AGG + chr8_4:14727301-14727320 Msa1315360:intron 45.0%
GAAGCCACTTGAAACCTGAA+TGG + chr8_4:14727611-14727630 Msa1315360:intron 45.0%
ACTGAAAGATGGGTCCATTC+AGG - chr8_4:14727628-14727647 None:intergenic 45.0%
GGTCCAGAACAATTCTGATG+TGG + chr8_4:14727680-14727699 Msa1315360:intron 45.0%
ACTTCCGAGCCTTTAGTACT+AGG - chr8_4:14727969-14727988 None:intergenic 45.0%
AGTACTAAAGGCTCGGAAGT+TGG + chr8_4:14727969-14727988 Msa1315360:intron 45.0%
GTGGACACTGAAATGATTCG+TGG + chr8_4:14728131-14728150 Msa1315360:CDS 45.0%
TGGTCAGCATCCACATCTAA+AGG + chr8_4:14728151-14728170 Msa1315360:CDS 45.0%
AGAGAACCATAATGACCGAG+TGG + chr8_4:14728263-14728282 Msa1315360:intron 45.0%
!! GCATGCAGAAGTATCTCTTC+CGG - chr8_4:14728309-14728328 None:intergenic 45.0%
AGATACTTCTGCATGCAACC+AGG + chr8_4:14728313-14728332 Msa1315360:CDS 45.0%
! GGATCGACTTAGCACTACTA+CGG - chr8_4:14728460-14728479 None:intergenic 45.0%
! GCTAAGTCGATCCTTTTCTC+TGG + chr8_4:14728467-14728486 Msa1315360:three_prime_UTR 45.0%
AGATGGCATTGCGAGGAGTT+TGG + chr8_4:14725970-14725989 Msa1315360:exon 50.0%
GTTAGCTATAGCGATTGGGG+TGG + chr8_4:14726011-14726030 Msa1315360:CDS 50.0%
!! GTGGAAGTAGCAGAGGCATT+AGG + chr8_4:14726030-14726049 Msa1315360:CDS 50.0%
!! GAGAGGGGCGTTGAAAGAAT+TGG + chr8_4:14726893-14726912 Msa1315360:intron 50.0%
ACCTGAAGTCACAGCCAATC+AGG - chr8_4:14727049-14727068 None:intergenic 50.0%
AACCACAACGCTCTTTCTGC+TGG + chr8_4:14727136-14727155 Msa1315360:intron 50.0%
!! AACCAGCAGAAAGAGCGTTG+TGG - chr8_4:14727141-14727160 None:intergenic 50.0%
GGCCCTAAACCTTATTAGGC+TGG - chr8_4:14727300-14727319 None:intergenic 50.0%
! GGGTCCATTCAGGTTTCAAG+TGG - chr8_4:14727618-14727637 None:intergenic 50.0%
ACATGAAGTCACGGCCAATC+AGG - chr8_4:14727842-14727861 None:intergenic 50.0%
GTCGCATTTGCCAGCGTTTA+AGG + chr8_4:14728088-14728107 Msa1315360:CDS 50.0%
GCATTTGCCAGCGTTTAAGG+AGG + chr8_4:14728091-14728110 Msa1315360:CDS 50.0%
CAGTGTCCACCTCTAACTGA+GGG - chr8_4:14728121-14728140 None:intergenic 50.0%
TCAGTGTCCACCTCTAACTG+AGG - chr8_4:14728122-14728141 None:intergenic 50.0%
CACACACCACTCGGTCATTA+TGG - chr8_4:14728272-14728291 None:intergenic 50.0%
TTCTGCATGCAACCAGGCTA+AGG + chr8_4:14728319-14728338 Msa1315360:CDS 50.0%
AACCAGGCTAAGGAATGCAC+TGG + chr8_4:14728329-14728348 Msa1315360:CDS 50.0%
ACCAGGCTAAGGAATGCACT+GGG + chr8_4:14728330-14728349 Msa1315360:CDS 50.0%
TCCATGTACCTTGCACGCTA+GGG - chr8_4:14728398-14728417 None:intergenic 50.0%
! TGTTGTTTGGCGCTATTGCC+AGG + chr8_4:14728533-14728552 Msa1315360:three_prime_UTR 50.0%
GATTGGGGTGGAAGTAGCAG+AGG + chr8_4:14726023-14726042 Msa1315360:CDS 55.0%
! GCACCGGCACTTCTGATCAA+AGG - chr8_4:14726687-14726706 None:intergenic 55.0%
! GCCTGATTGGCTGTGACTTC+AGG + chr8_4:14727045-14727064 Msa1315360:intron 55.0%
GTCACGGCCAATCAGGCAAA+AGG - chr8_4:14727835-14727854 None:intergenic 55.0%
TCCCAGTGCATTCCTTAGCC+TGG - chr8_4:14728334-14728353 None:intergenic 55.0%
GGCTAAGGAATGCACTGGGA+AGG + chr8_4:14728334-14728353 Msa1315360:CDS 55.0%
ACCAAACACCCTAGCGTGCA+AGG + chr8_4:14728387-14728406 Msa1315360:CDS 55.0%
! ACCTTGCACGCTAGGGTGTT+TGG - chr8_4:14728391-14728410 None:intergenic 55.0%
ACCCTAGCGTGCAAGGTACA+TGG + chr8_4:14728394-14728413 Msa1315360:CDS 55.0%
GTCCATGTACCTTGCACGCT+AGG - chr8_4:14728399-14728418 None:intergenic 55.0%
GTTGGACGGCTGACGGTGAT+CGG - chr8_4:14725936-14725955 None:intergenic 60.0%
GGTGGTTGTTGGACGGCTGA+CGG - chr8_4:14725943-14725962 None:intergenic 60.0%
GGGTTCGCCTCCTTAAACGC+TGG - chr8_4:14728101-14728120 None:intergenic 60.0%
GGAGGCGAACCCTCAGTTAG+AGG + chr8_4:14728109-14728128 Msa1315360:CDS 60.0%
GGCGAACCCTCAGTTAGAGG+TGG + chr8_4:14728112-14728131 Msa1315360:CDS 60.0%
TGAGCTGTGCGGCGGCGTTA+GGG - chr8_4:14725899-14725918 None:intergenic 65.0%
AGGCTCTGTGAGCTGTGCGG+CGG - chr8_4:14725907-14725926 None:intergenic 65.0%
CGGAGGCTCTGTGAGCTGTG+CGG - chr8_4:14725910-14725929 None:intergenic 65.0%
CTGACGGTGATCGGAGACGG+AGG - chr8_4:14725927-14725946 None:intergenic 65.0%
CGGCTGACGGTGATCGGAGA+CGG - chr8_4:14725930-14725949 None:intergenic 65.0%
GTGAGCTGTGCGGCGGCGTT+AGG - chr8_4:14725900-14725919 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 14725709 14728831 14725709 ID=Msa1315360;Name=Msa1315360
chr8_4 mRNA 14725709 14728831 14725709 ID=Msa1315360-mRNA-1;Parent=Msa1315360;Name=Msa1315360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=263|1|1|1|1|1|3|394|119
chr8_4 exon 14725709 14726051 14725709 ID=Msa1315360-mRNA-1:exon:5554;Parent=Msa1315360-mRNA-1
chr8_4 exon 14728076 14728182 14728076 ID=Msa1315360-mRNA-1:exon:5555;Parent=Msa1315360-mRNA-1
chr8_4 exon 14728265 14728831 14728265 ID=Msa1315360-mRNA-1:exon:5556;Parent=Msa1315360-mRNA-1
chr8_4 five_prime_UTR 14725709 14725971 14725709 ID=Msa1315360-mRNA-1:five_prime_utr;Parent=Msa1315360-mRNA-1
chr8_4 CDS 14725972 14726051 14725972 ID=Msa1315360-mRNA-1:cds;Parent=Msa1315360-mRNA-1
chr8_4 CDS 14728076 14728182 14728076 ID=Msa1315360-mRNA-1:cds;Parent=Msa1315360-mRNA-1
chr8_4 CDS 14728265 14728437 14728265 ID=Msa1315360-mRNA-1:cds;Parent=Msa1315360-mRNA-1
chr8_4 three_prime_UTR 14728438 14728831 14728438 ID=Msa1315360-mRNA-1:three_prime_utr;Parent=Msa1315360-mRNA-1
Gene Sequence

>Msa1315360

ATGGCATTGCGAGGAGTTTGGCAACTGAAGAAGCTCGTTGTTAGCTATAGCGATTGGGGTGGAAGTAGCAGAGGCATTAGGGCATTTATGGAGTCGCATTTGCCAGCGTTTAAGGAGGCGAACCCTCAGTTAGAGGTGGACACTGAAATGATTCGTGGTCAGCATCCACATCTAAAGGCTTTTTACAAGAACCATAATGACCGAGTGGTGTGTGTGAAGAATATGGATCCGGAAGAGATACTTCTGCATGCAACCAGGCTAAGGAATGCACTGGGAAGGAAAGTAATTAAGCTGAGGACAAGACATGTAACCAAACACCCTAGCGTGCAAGGTACATGGACAACTGCTTTGAAATATTAG

Protein sequence

>Msa1315360

MALRGVWQLKKLVVSYSDWGGSSRGIRAFMESHLPAFKEANPQLEVDTEMIRGQHPHLKAFYKNHNDRVVCVKNMDPEEILLHATRLRNALGRKVIKLRTRHVTKHPSVQGTWTTALKY*