AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323940 MtrunA17_Chr8g0357411 88.265 588 69 0 1 588 1 588 0.0 1097
Msa1323940 MtrunA17_Chr2g0310331 65.821 591 193 4 1 588 1 585 0.0 800
Msa1323940 MtrunA17_Chr2g0310401 63.084 428 156 2 162 588 5 431 0.0 570
Msa1323940 MtrunA17_Chr8g0357221 92.069 290 23 0 1 290 1 290 0.0 556
Msa1323940 MtrunA17_Chr8g0357231 96.124 258 10 0 331 588 1 258 0.0 522
Msa1323940 MtrunA17_Chr4g0023911 41.398 558 311 8 36 587 32 579 3.51e-144 429
Msa1323940 MtrunA17_Chr4g0042111 36.949 544 331 7 54 588 21 561 2.03e-112 347
Msa1323940 MtrunA17_Chr2g0323131 34.798 569 348 10 25 588 14 564 1.87e-105 329
Msa1323940 MtrunA17_Chr2g0323151 35.611 483 303 5 107 588 4 479 9.93e-101 314
Msa1323940 MtrunA17_Chr6g0465441 34.296 554 345 8 46 588 7 552 3.72e-99 312
Msa1323940 MtrunA17_Chr8g0336181 35.519 549 341 9 50 587 8 554 4.95e-98 309
Msa1323940 MtrunA17_Chr6g0466051 33.514 552 356 7 45 588 4 552 9.88e-97 306
Msa1323940 MtrunA17_Chr6g0451711 32.971 552 358 7 46 588 8 556 2.99e-96 305
Msa1323940 MtrunA17_Chr6g0465911 33.333 552 357 7 45 588 4 552 4.93e-96 304
Msa1323940 MtrunA17_Chr2g0319041 32.616 558 339 10 53 587 12 555 7.85e-95 301
Msa1323940 MtrunA17_Chr3g0082691 34.432 546 344 9 53 588 11 552 1.21e-94 300
Msa1323940 MtrunA17_Chr4g0024691 34.182 550 349 8 48 588 15 560 5.49e-94 299
Msa1323940 MtrunA17_Chr7g0236991 33.457 541 351 6 55 588 14 552 4.59e-93 296
Msa1323940 MtrunA17_Chr7g0237001 33.272 541 352 6 55 588 14 552 2.51e-92 294
Msa1323940 MtrunA17_Chr7g0237041 33.272 541 352 6 55 588 14 552 2.51e-92 294
Msa1323940 MtrunA17_Chr7g0237081 33.272 541 352 6 55 588 14 552 2.51e-92 294
Msa1323940 MtrunA17_Chr7g0237051 33.272 541 352 6 55 588 14 552 2.51e-92 294
Msa1323940 MtrunA17_Chr5g0425371 33.579 542 349 7 55 588 14 552 3.76e-92 294
Msa1323940 MtrunA17_Chr3g0105071 33.945 545 346 9 53 587 15 555 4.46e-92 294
Msa1323940 MtrunA17_Chr6g0465851 33.529 510 331 5 85 588 10 517 7.42e-92 292
Msa1323940 MtrunA17_Chr2g0319051 33.918 513 325 8 85 587 4 512 7.83e-92 292
Msa1323940 MtrunA17_Chr5g0431651 33.821 547 347 9 53 588 9 551 6.30e-91 290
Msa1323940 MtrunA17_Chr5g0431571 33.883 546 345 10 53 587 7 547 9.67e-90 287
Msa1323940 MtrunA17_Chr7g0236961 34.068 499 322 4 95 588 1 497 1.78e-89 285
Msa1323940 MtrunA17_Chr7g0237011 33.667 499 324 4 95 588 1 497 1.24e-88 283
Msa1323940 MtrunA17_Chr4g0048911 32.115 520 334 11 74 583 44 554 1.29e-84 275
Msa1323940 MtrunA17_Chr4g0008621 36.973 403 235 5 55 443 20 417 3.20e-83 267
Msa1323940 MtrunA17_Chr4g0048921 32.797 497 316 9 101 587 81 569 1.23e-79 261
Msa1323940 MtrunA17_Chr6g0465981 38.606 373 220 5 45 410 4 374 8.37e-79 253
Msa1323940 MtrunA17_Chr6g0465871 38.606 373 220 5 45 410 4 374 8.37e-79 253
Msa1323940 MtrunA17_Chr6g0466081 38.606 373 220 5 45 410 4 374 8.37e-79 253
Msa1323940 MtrunA17_Chr6g0466111 39.577 331 194 3 85 410 10 339 8.55e-75 241
Msa1323940 MtrunA17_Chr6g0465931 39.577 331 194 3 85 410 10 339 8.83e-75 241
Msa1323940 MtrunA17_Chr2g0280581 30.426 516 342 9 82 583 5 517 1.10e-72 242
Msa1323940 MtrunA17_Chr3g0108941 30.000 510 343 7 85 583 7 513 7.17e-72 239
Msa1323940 MtrunA17_Chr3g0109001 30.000 510 343 7 85 583 7 513 2.04e-71 238
Msa1323940 MtrunA17_Chr7g0236951 40.252 318 184 3 95 408 1 316 1.44e-70 230
Msa1323940 MtrunA17_Chr3g0109031 29.020 510 347 9 85 583 7 512 7.02e-70 234
Msa1323940 MtrunA17_Chr7g0237031 39.623 318 186 3 95 408 1 316 9.63e-70 228
Msa1323940 MtrunA17_Chr6g0477111 30.453 486 323 9 109 583 6 487 7.56e-69 231
Msa1323940 MtrunA17_Chr3g0099031 29.767 514 338 10 85 583 7 512 7.98e-69 231
Msa1323940 MtrunA17_Chr3g0109021 29.020 510 347 9 85 583 7 512 9.62e-69 231
Msa1323940 MtrunA17_Chr3g0105691 29.020 510 347 9 85 583 40 545 2.27e-68 231
Msa1323940 MtrunA17_Chr3g0108981 29.532 491 332 7 104 583 1 488 2.29e-68 229
Msa1323940 MtrunA17_Chr3g0108961 29.532 491 332 7 104 583 1 488 2.29e-68 229
Msa1323940 MtrunA17_Chr3g0108991 29.216 510 346 9 85 583 7 512 4.79e-68 229
Msa1323940 MtrunA17_Chr3g0108951 29.216 510 346 9 85 583 7 512 4.79e-68 229
Msa1323940 MtrunA17_Chr7g0236971 33.582 402 264 3 188 588 1 400 1.38e-67 225
Msa1323940 MtrunA17_Chr3g0109011 29.328 491 332 9 104 583 1 487 1.11e-66 225
Msa1323940 MtrunA17_Chr3g0108971 29.328 491 332 9 104 583 1 487 1.31e-65 222
Msa1323940 MtrunA17_Chr7g0217361 35.099 302 191 3 288 586 8 307 7.37e-65 214
Msa1323940 MtrunA17_Chr6g0477121 30.882 408 271 8 166 564 8 413 4.54e-58 200
Msa1323940 MtrunA17_Chr5g0445511 40.664 241 141 2 183 423 1 239 2.36e-52 179
Msa1323940 MtrunA17_Chr2g0310411 58.235 170 60 4 1 164 1 165 3.09e-52 176
Msa1323940 MtrunA17_Chr2g0319071 28.107 523 298 13 85 587 23 487 1.07e-50 182
Msa1323940 MtrunA17_Chr2g0319081 29.969 327 204 8 267 587 118 425 8.28e-41 153
Msa1323940 MtrunA17_Chr2g0319081 38.333 120 62 5 55 164 20 137 4.87e-13 71.2
Msa1323940 MtrunA17_Chr2g0310121 27.635 427 273 12 106 505 275 692 2.61e-38 150
Msa1323940 MtrunA17_Chr3g0101681 27.152 453 290 15 106 527 276 719 3.03e-38 150
Msa1323940 MtrunA17_Chr7g0237071 37.561 205 119 3 95 291 1 204 2.88e-34 129
Msa1323940 MtrunA17_Chr6g0466031 28.185 259 184 2 331 588 2 259 7.38e-31 121
Msa1323940 MtrunA17_Chr2g0281651 30.483 269 178 5 266 533 43 303 1.52e-29 121
Msa1323940 MtrunA17_Chr6g0466021 36.683 199 117 5 45 236 4 200 1.71e-28 112
Msa1323940 MtrunA17_Chr7g0237061 27.413 259 163 3 331 588 2 236 2.29e-27 110
Msa1323940 MtrunA17_Chr7g0217351 34.021 194 119 4 104 291 83 273 2.11e-26 109
Msa1323940 MtrunA17_Chr7g0233861 40.741 135 71 1 229 363 33 158 8.99e-23 95.9
Msa1323940 MtrunA17_Chr7g0218001 28.090 267 161 5 104 340 344 609 1.29e-22 102
Msa1323940 MtrunA17_Chr7g0259881 24.731 279 167 6 104 346 227 498 7.62e-20 93.6
Msa1323940 MtrunA17_Chr7g0218041 27.615 239 149 5 150 365 1 238 1.65e-16 82.0
Msa1323940 MtrunA17_Chr7g0236981 30.000 120 78 3 55 168 14 133 1.89e-11 62.4
Msa1323940 MtrunA17_Chr5g0445501 24.561 171 128 1 419 588 1 171 3.90e-11 62.0
Msa1323940 MtrunA17_Chr5g0445401 44.048 84 46 1 202 284 5 88 9.85e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323940 AT3G25820.1 42.685 581 309 12 28 588 17 593 5.78e-156 460
Msa1323940 AT3G25830.1 42.685 581 309 12 28 588 17 593 5.78e-156 460
Msa1323940 AT2G24210.1 43.659 552 291 11 52 588 43 589 4.02e-154 455
Msa1323940 AT3G25810.1 41.294 603 319 15 14 588 1 596 1.48e-145 434
Msa1323940 AT4G16730.1 40.748 535 300 6 70 588 5 538 2.00e-145 431
Msa1323940 AT4G16740.1 39.818 550 307 7 53 588 24 563 2.66e-142 424
Msa1323940 AT4G16730.2 41.260 492 275 5 110 588 2 492 1.26e-138 412
Msa1323940 AT3G25820.2 42.651 415 220 9 28 428 17 427 1.43e-105 325
Msa1323940 AT4G16740.2 40.811 370 201 4 53 410 24 387 8.58e-93 291
Msa1323940 AT5G23960.2 31.492 543 362 6 53 588 5 544 1.15e-89 287
Msa1323940 AT5G23960.1 31.743 545 360 7 53 588 5 546 2.75e-89 286
Msa1323940 AT1G61680.1 33.947 489 314 7 95 577 82 567 1.78e-87 282
Msa1323940 AT1G61680.2 33.947 489 307 8 95 577 82 560 6.67e-87 281
Msa1323940 AT3G25820.4 41.209 364 193 9 28 377 17 373 5.79e-84 268
Msa1323940 AT3G25820.3 41.209 364 193 9 28 377 17 373 5.79e-84 268
Msa1323940 AT3G14520.1 30.838 561 371 9 39 588 49 603 4.41e-81 266
Msa1323940 AT3G14540.1 29.983 597 402 10 1 588 11 600 3.15e-79 261
Msa1323940 AT4G16740.4 41.176 323 173 3 53 363 24 341 7.26e-79 254
Msa1323940 AT4G16740.3 41.176 323 173 3 53 363 24 341 7.26e-79 254
Msa1323940 AT1G31950.1 30.627 542 357 8 60 588 70 605 1.45e-78 260
Msa1323940 AT1G31950.3 30.983 539 360 7 60 588 70 606 2.21e-78 259
Msa1323940 AT1G70080.1 29.688 576 389 8 25 587 37 609 4.52e-77 256
Msa1323940 AT3G29410.1 28.967 542 377 7 54 588 62 602 5.03e-72 243
Msa1323940 AT3G32030.1 29.422 588 389 13 23 588 20 603 3.01e-70 238
Msa1323940 AT1G33750.1 29.520 542 372 9 54 588 64 602 4.93e-69 234
Msa1323940 AT3G14540.2 30.600 500 333 9 1 493 11 503 1.01e-68 231
Msa1323940 AT3G29410.2 29.098 488 341 4 105 588 11 497 1.22e-68 231
Msa1323940 AT3G14490.1 29.348 552 378 9 46 588 52 600 2.64e-68 233
Msa1323940 AT1G31950.2 31.674 442 292 6 60 493 70 509 9.87e-67 226
Msa1323940 AT3G29110.1 29.101 567 387 11 33 587 32 595 2.92e-62 216
Msa1323940 AT5G44630.1 27.860 542 377 8 58 587 16 555 3.64e-62 215
Msa1323940 AT4G15870.1 26.691 547 378 8 51 587 63 596 3.57e-61 213
Msa1323940 AT3G29190.1 29.550 511 348 8 88 588 92 600 1.34e-56 201
Msa1323940 AT4G13300.1 25.830 542 386 9 58 587 15 552 1.79e-55 197
Msa1323940 AT4G20210.1 26.500 600 412 12 8 587 8 598 1.81e-55 197
Msa1323940 AT2G23230.2 26.538 569 398 8 32 585 33 596 4.64e-53 191
Msa1323940 AT4G13280.2 26.947 475 340 6 119 587 79 552 1.48e-52 189
Msa1323940 AT4G20200.1 26.573 572 399 11 32 587 36 602 2.09e-52 189
Msa1323940 AT2G23230.1 26.455 567 396 9 32 585 33 591 3.78e-52 189
Msa1323940 AT1G48800.1 27.920 548 366 11 54 582 62 599 2.44e-51 186
Msa1323940 AT4G20230.1 25.577 563 393 11 37 582 45 598 3.85e-49 180
Msa1323940 AT4G20230.2 25.577 563 393 11 37 582 57 610 3.89e-49 181
Msa1323940 AT1G66020.1 26.372 565 395 13 37 587 39 596 2.73e-46 172
Msa1323940 AT4G13280.1 26.737 475 311 9 119 587 79 522 2.99e-44 165
Msa1323940 AT1G48820.1 26.415 530 345 9 62 585 70 560 4.23e-44 166
Msa1323940 AT1G66020.2 29.459 370 245 11 37 397 39 401 1.71e-38 147
Msa1323940 AT5G48110.1 27.273 341 241 6 249 587 2 337 3.29e-36 139
Msa1323940 AT1G79460.1 24.466 515 345 13 106 587 274 777 3.09e-34 139
Msa1323940 AT1G61120.1 26.490 453 282 13 100 521 279 711 3.99e-32 132
Msa1323940 AT4G02780.1 26.812 276 155 7 104 341 329 595 1.97e-19 93.2

Find 91 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAATTTCTTTGTTAAAA+TGG 0.095292 8_4:-32784226 None:intergenic
TTTACTCCAATTCGCTAAAT+TGG 0.181502 8_4:+32785298 Msa1323940:CDS
CTAAATTCCAACCTTCAATT+TGG 0.197481 8_4:+32783897 Msa1323940:CDS
GTTTGAAGATGAAACTATAT+TGG 0.261667 8_4:+32785097 Msa1323940:CDS
CTTTGGATCTTCCATTGAAT+TGG 0.264293 8_4:+32785207 Msa1323940:CDS
ATTCTGAATTGTTCAAAATC+TGG 0.272530 8_4:-32787004 None:intergenic
ATGCACACTTTAGTTCTTCT+AGG 0.272677 8_4:-32785346 None:intergenic
ATCATCAACTGTGGTAATTA+AGG 0.283666 8_4:-32787047 None:intergenic
TACTTTATATTCACTACTTA+AGG 0.308038 8_4:-32783939 None:intergenic
AGTATATTGCACAACACTTC+AGG 0.309519 8_4:-32789701 None:intergenic
AAGCATATTTGCATGTAGTA+TGG 0.312552 8_4:-32787254 None:intergenic
TGAAATCCAATTTAGCGAAT+TGG 0.313439 8_4:-32785304 None:intergenic
AGTTGCTTACTGCTTTCTTC+AGG 0.318825 8_4:-32787355 None:intergenic
GAGATCAACGCAAAGTTCTA+AGG 0.332792 8_4:+32784114 Msa1323940:CDS
CAAAGAAATTAGGGACATAT+TGG 0.340628 8_4:+32784235 Msa1323940:CDS
AGTCCATGATGTCTACATTA+TGG 0.344971 8_4:+32789509 Msa1323940:CDS
TATGATGCCTTGCATTGAAT+TGG 0.356253 8_4:-32783830 None:intergenic
AAATGCATTATGAACGAAAC+TGG 0.357987 8_4:+32789454 Msa1323940:CDS
TGGAAGACTTGGTTCGCTTA+GGG 0.360721 8_4:+32787968 Msa1323940:CDS
TGAAGAGCTCAAGTTCTTCC+AGG 0.364896 8_4:-32787090 None:intergenic
AGAGATAACGGCCGGTTGTT+AGG 0.375487 8_4:-32783779 None:intergenic
ATAATCACGAGCCTCTATTT+CGG 0.397407 8_4:-32789482 None:intergenic
GGACAGTTTGTAGATGTTCA+TGG 0.404960 8_4:+32785041 Msa1323940:CDS
ACTTCTAATAAGTCATGCTT+TGG 0.407606 8_4:+32785190 Msa1323940:CDS
GAATTGTTGAGAACTTTGTT+TGG 0.420249 8_4:+32786960 Msa1323940:CDS
ATATTCTTTGAGAAAATTTG+TGG 0.422729 8_4:-32785138 None:intergenic
TTAATGCAGGAAGAAATTTA+CGG 0.426943 8_4:+32784092 Msa1323940:intron
GTTGAAGAATACATGGCAAA+TGG 0.426945 8_4:+32787877 Msa1323940:CDS
TGTATGTTCATGTACCAGTA+TGG 0.427645 8_4:+32789610 Msa1323940:CDS
TGCTATAAGCATCTCCATAC+TGG 0.428412 8_4:-32789624 None:intergenic
ATAATGCATTTATTTAACTT+TGG 0.429400 8_4:-32789442 None:intergenic
GAGAACTTTGTTTGGAATGT+TGG 0.432073 8_4:+32786968 Msa1323940:CDS
CTCTTGCAATGGTTGCTGTC+AGG 0.432621 8_4:-32788011 None:intergenic
CGAGAAATTGTCCAATTCAA+TGG 0.434579 8_4:-32785218 None:intergenic
TAATCATTGGTCCAAATTGA+AGG 0.438142 8_4:-32783908 None:intergenic
GATGCCACATTCAATCGAAA+TGG 0.438499 8_4:+32787948 Msa1323940:CDS
ATTGATGTATTGCAAAGGAT+TGG 0.446275 8_4:+32784194 Msa1323940:CDS
ATGGAAGACTTGGTTCGCTT+AGG 0.449407 8_4:+32787967 Msa1323940:CDS
TCTTCACAGAAGCTATTGAT+AGG 0.451974 8_4:+32787107 Msa1323940:CDS
TAGATGGGATTTGAATGCCT+TGG 0.458301 8_4:+32787223 Msa1323940:intron
TTAAAGAGTGAAAATGAGAC+AGG 0.459331 8_4:+32789412 Msa1323940:intron
TGCACAACACTTCAGGGAAT+CGG 0.460962 8_4:-32789694 None:intergenic
AAATACAGCATGTGCACCTA+TGG 0.461919 8_4:-32787908 None:intergenic
GATGATGTGTATGATTTGTA+TGG 0.476992 8_4:+32787064 Msa1323940:CDS
CATGGTTATGAGATATCTAC+AGG 0.495263 8_4:+32784338 Msa1323940:CDS
AAACGCTTTCTCCTAACAAC+CGG 0.495343 8_4:+32783768 Msa1323940:CDS
TAAGGACTGAATATAATCAT+TGG 0.497500 8_4:-32783921 None:intergenic
CTTACTGCTTTCTTCAGGTA+CGG 0.500237 8_4:-32787350 None:intergenic
AACTGGAGCTTCCGAAATAG+AGG 0.500437 8_4:+32789471 Msa1323940:CDS
GCCATGTATTCTTCAACGGT+TGG 0.503430 8_4:-32787871 None:intergenic
CATTGGTCCAAATTGAAGGT+TGG 0.506340 8_4:-32783904 None:intergenic
GAAGCAAAGTGGTACTATAG+TGG 0.511242 8_4:+32787841 Msa1323940:CDS
GCAAGAGTTGCTAATGACTA+CGG 0.511511 8_4:+32788027 Msa1323940:CDS
TTCAATCGAAATGGAAGACT+TGG 0.513598 8_4:+32787957 Msa1323940:CDS
TTGAAGAATACATGGCAAAT+GGG 0.520906 8_4:+32787878 Msa1323940:CDS
TGCTGTCAGGCGAATTATGT+TGG 0.521802 8_4:-32787998 None:intergenic
CTTCCATAATGTAGACATCA+TGG 0.522455 8_4:-32789512 None:intergenic
AGCATATTTGCATGTAGTAT+GGG 0.525197 8_4:-32787253 None:intergenic
TTGCATGTTGCTAGAGATAA+CGG 0.527851 8_4:-32783791 None:intergenic
GAATATTTGAAACAAAATAG+AGG 0.535112 8_4:+32785155 Msa1323940:CDS
TTTCTCGACTCGAGGCTCGA+TGG 0.546070 8_4:+32785234 Msa1323940:CDS
CCCTCGTCCAATTCAATGCA+AGG 0.550879 8_4:+32783823 Msa1323940:CDS
ATTTGCCATGTATTCTTCAA+CGG 0.557754 8_4:-32787875 None:intergenic
GTCATTAGCAACTCTTGCAA+TGG 0.561701 8_4:-32788022 None:intergenic
GTATATTGCACAACACTTCA+GGG 0.561990 8_4:-32789700 None:intergenic
CAAGAGTTGCTAATGACTAC+GGG 0.573530 8_4:+32788028 Msa1323940:CDS
ATTGAAGGTTGGAATTTAGA+CGG 0.575521 8_4:-32783893 None:intergenic
TTCAGACTCTTGAGGCAACA+TGG 0.578812 8_4:+32784320 Msa1323940:CDS
GGAAGACTTGGTTCGCTTAG+GGG 0.580870 8_4:+32787969 Msa1323940:CDS
TCTTCCATTTCGATTGAATG+TGG 0.582432 8_4:-32787952 None:intergenic
TCCAACCGTTGAAGAATACA+TGG 0.583771 8_4:+32787870 Msa1323940:CDS
CATATTTGATAGAAGCAAAG+TGG 0.585970 8_4:+32787830 Msa1323940:CDS
TTGGACAATTTCTCGACTCG+AGG 0.586359 8_4:+32785226 Msa1323940:CDS
AGATCAACGCAAAGTTCTAA+GGG 0.587082 8_4:+32784115 Msa1323940:CDS
AAGAACTAAAGTGTGCATCA+AGG 0.590523 8_4:+32785351 Msa1323940:CDS
GCACATGCTGTATTTACCCA+TGG 0.601527 8_4:+32787916 Msa1323940:CDS
AGTTTATTGATGTATTGCAA+AGG 0.602279 8_4:+32784189 Msa1323940:CDS
GAAGAGCTCAAGTTCTTCCA+GGG 0.609664 8_4:-32787089 None:intergenic
GTAGTATGGGAGAGAATCCA+AGG 0.610000 8_4:-32787240 None:intergenic
GCCTTGCATTGAATTGGACG+AGG 0.610175 8_4:-32783824 None:intergenic
GTGGCATCGAAAAGTAACCA+TGG 0.621565 8_4:-32787933 None:intergenic
TGGCATCGAAAAGTAACCAT+GGG 0.626709 8_4:-32787932 None:intergenic
CATGCAAATATGCTTTCATG+CGG 0.630142 8_4:+32787262 Msa1323940:CDS
GAGTCTGAACTTGAGTGCTG+TGG 0.633446 8_4:-32784306 None:intergenic
ATGTTGCTAGAGATAACGGC+CGG 0.651350 8_4:-32783787 None:intergenic
CACTCAAGTTCAGACTCTTG+AGG 0.656354 8_4:+32784312 Msa1323940:CDS
CCTTGCATTGAATTGGACGA+GGG 0.668480 8_4:-32783823 None:intergenic
GCAAATGGGTGTGTATCCAT+AGG 0.671102 8_4:+32787892 Msa1323940:CDS
GTATGATTTGTATGGCACCC+TGG 0.671543 8_4:+32787072 Msa1323940:CDS
ATCATACACATCATCAACTG+TGG 0.683052 8_4:-32787056 None:intergenic
GACTTATTAGAAGTGACACG+TGG 0.737197 8_4:-32785181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATATTTTTAATAATA+AGG + chr8_4:32786422-32786441 Msa1323940:intron 0.0%
!! ATATATATATATATATATAT+AGG + chr8_4:32788095-32788114 Msa1323940:intron 0.0%
!! TATATATATATATATATATA+GGG + chr8_4:32788094-32788113 Msa1323940:intron 0.0%
!! ATATATATATATATATATAT+AGG + chr8_4:32788095-32788114 Msa1323940:intron 0.0%
!! TATATATATATATATATATA+GGG + chr8_4:32788094-32788113 Msa1323940:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr8_4:32788095-32788114 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr8_4:32788094-32788113 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG - chr8_4:32788095-32788114 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr8_4:32788094-32788113 None:intergenic 0.0%
!! GAATCTTATAAATAAATAAA+TGG - chr8_4:32783998-32784017 None:intergenic 10.0%
!! TAATTTAATTAAATTAATGC+AGG + chr8_4:32784079-32784098 Msa1323940:intron 10.0%
!! CTATTAAAAAAAATTAATTG+AGG - chr8_4:32784465-32784484 None:intergenic 10.0%
!! AATATTACATAATATATACA+AGG + chr8_4:32786170-32786189 Msa1323940:intron 10.0%
!! ATATTACATAATATATACAA+GGG + chr8_4:32786171-32786190 Msa1323940:intron 10.0%
!!! TTATCAAATAATTTTTTTGA+AGG + chr8_4:32786627-32786646 Msa1323940:intron 10.0%
!!! TATCAAATAATTTTTTTGAA+GGG + chr8_4:32786628-32786647 Msa1323940:intron 10.0%
!! AAAAAATATCATTATTTAAC+GGG - chr8_4:32787138-32787157 None:intergenic 10.0%
!!! TCTATTTTTAATAAGTTTTT+AGG + chr8_4:32787581-32787600 Msa1323940:intron 10.0%
!!! AGAACTAAATTTTTTTTGTA+GGG - chr8_4:32784498-32784517 None:intergenic 15.0%
!!! TAGAACTAAATTTTTTTTGT+AGG - chr8_4:32784499-32784518 None:intergenic 15.0%
!! AAGATAAAAGTAATAAAATC+TGG + chr8_4:32784689-32784708 Msa1323940:intron 15.0%
!! GATTGAAAAACAATTAATAA+TGG + chr8_4:32785745-32785764 Msa1323940:intron 15.0%
!!! ATTTTTACTTATAAATGAGA+CGG - chr8_4:32785885-32785904 None:intergenic 15.0%
!!! ATTATTATTTTTTGTTCAAG+TGG - chr8_4:32786388-32786407 None:intergenic 15.0%
!! TTTAAGCACAAAAAATATAA+AGG - chr8_4:32786465-32786484 None:intergenic 15.0%
!!! TAAAAATTTGAGTTTTCTTT+TGG + chr8_4:32786706-32786725 Msa1323940:intron 15.0%
!!! AAAAATTTGAGTTTTCTTTT+GGG + chr8_4:32786707-32786726 Msa1323940:intron 15.0%
!! AAGAGAAAATTCAAATAAAA+AGG - chr8_4:32787168-32787187 None:intergenic 15.0%
!!! ATTATCTCTATATATTTTGA+AGG + chr8_4:32787411-32787430 Msa1323940:intron 15.0%
!!! TTATCTCTATATATTTTGAA+GGG + chr8_4:32787412-32787431 Msa1323940:intron 15.0%
!! AACATTATTATACTTAATAG+TGG + chr8_4:32787791-32787810 Msa1323940:intron 15.0%
!! TACCTTATAAAAAAATAAGT+GGG - chr8_4:32788782-32788801 None:intergenic 15.0%
!! ATACCTTATAAAAAAATAAG+TGG - chr8_4:32788783-32788802 None:intergenic 15.0%
!! TATATAGAGAAATTCTAATA+TGG + chr8_4:32789133-32789152 Msa1323940:intron 15.0%
!!! ATAATGCATTTATTTAACTT+TGG - chr8_4:32789445-32789464 None:intergenic 15.0%
!! TACTTTATATTCACTACTTA+AGG - chr8_4:32783942-32783961 None:intergenic 20.0%
!!! ACCATTTTAACAAAGAAATT+AGG + chr8_4:32784225-32784244 Msa1323940:CDS 20.0%
!!! CCATTTTAACAAAGAAATTA+GGG + chr8_4:32784226-32784245 Msa1323940:CDS 20.0%
!! TTCGAAAATTTAAGAGTTTA+AGG - chr8_4:32784559-32784578 None:intergenic 20.0%
!!! AAATTTTCGAACGATTTTTT+TGG + chr8_4:32784568-32784587 Msa1323940:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+TGG + chr8_4:32784724-32784743 Msa1323940:intron 20.0%
!! AAGTAAAGACTTAACTTTAA+AGG + chr8_4:32784895-32784914 Msa1323940:intron 20.0%
!!! TTTAAAGGTCTCAATTTTAT+AGG + chr8_4:32784910-32784929 Msa1323940:intron 20.0%
!!! TTAAAGGTCTCAATTTTATA+GGG + chr8_4:32784911-32784930 Msa1323940:intron 20.0%
!!! GAAGTATGTAATTTTAAGAA+AGG + chr8_4:32785020-32785039 Msa1323940:CDS 20.0%
!!! ATATTCTTTGAGAAAATTTG+TGG - chr8_4:32785141-32785160 None:intergenic 20.0%
!!! GAATATTTGAAACAAAATAG+AGG + chr8_4:32785155-32785174 Msa1323940:CDS 20.0%
!! CATTAATATATACGAAAAAC+AGG + chr8_4:32785259-32785278 Msa1323940:CDS 20.0%
!! AATAAAAACCTAATTTGAGA+CGG - chr8_4:32785435-32785454 None:intergenic 20.0%
!! AAATGATTAGCAATGTTAAT+TGG + chr8_4:32785480-32785499 Msa1323940:intron 20.0%
!! AATGATTAGCAATGTTAATT+GGG + chr8_4:32785481-32785500 Msa1323940:intron 20.0%
!!! TTTTTACTTATAAATGAGAC+GGG - chr8_4:32785884-32785903 None:intergenic 20.0%
!! TTGAAAGTAACATTATTGAA+AGG + chr8_4:32786022-32786041 Msa1323940:intron 20.0%
!!! ACCAAACTAAGATATTTTTA+TGG + chr8_4:32786657-32786676 Msa1323940:intron 20.0%
!! TCCATAAAAATATCTTAGTT+TGG - chr8_4:32786661-32786680 None:intergenic 20.0%
!! CAAATTATTAGTAGAAAGTA+TGG - chr8_4:32786867-32786886 None:intergenic 20.0%
!!! ATTTTTTCTTCATTTTCAGA+TGG + chr8_4:32786891-32786910 Msa1323940:intron 20.0%
!! GAAATTATCAATATTGTGTT+TGG + chr8_4:32787194-32787213 Msa1323940:intron 20.0%
!! TTAAAATAGAAGTTTGGTAT+TGG - chr8_4:32787522-32787541 None:intergenic 20.0%
!!! AAAGGTTTAAAATAGAAGTT+TGG - chr8_4:32787528-32787547 None:intergenic 20.0%
!! ACCTTATAAAAAAATAAGTG+GGG - chr8_4:32788781-32788800 None:intergenic 20.0%
!! ATATATATATATATACCCTC+CGG + chr8_4:32788972-32788991 Msa1323940:intron 20.0%
! TAAGGACTGAATATAATCAT+TGG - chr8_4:32783924-32783943 None:intergenic 25.0%
! TTAATGCAGGAAGAAATTTA+CGG + chr8_4:32784092-32784111 Msa1323940:intron 25.0%
! AGTTTATTGATGTATTGCAA+AGG + chr8_4:32784189-32784208 Msa1323940:CDS 25.0%
! CCCTAATTTCTTTGTTAAAA+TGG - chr8_4:32784229-32784248 None:intergenic 25.0%
!!! TAGTAGTCTTTGATTGATTT+TGG - chr8_4:32784442-32784461 None:intergenic 25.0%
!!! AAACAAACTTTGTTTTAGCA+GGG - chr8_4:32784530-32784549 None:intergenic 25.0%
!!! TAAACAAACTTTGTTTTAGC+AGG - chr8_4:32784531-32784550 None:intergenic 25.0%
!! TAAAGGTCTCAATTTTATAG+GGG + chr8_4:32784912-32784931 Msa1323940:intron 25.0%
! GTTTGAAGATGAAACTATAT+TGG + chr8_4:32785097-32785116 Msa1323940:CDS 25.0%
!! AAGTTGTCATTTACATTAAG+TGG + chr8_4:32785381-32785400 Msa1323940:intron 25.0%
!! TTTTACTTATAAATGAGACG+GGG - chr8_4:32785883-32785902 None:intergenic 25.0%
! TATTTGCTTTCAATTTGCAA+TGG - chr8_4:32786325-32786344 None:intergenic 25.0%
!!! GTGGACATAATTTTTGTTAT+GGG - chr8_4:32786369-32786388 None:intergenic 25.0%
!! AGTGGACATAATTTTTGTTA+TGG - chr8_4:32786370-32786389 None:intergenic 25.0%
!! TCAAAAAACAAAGGACTTTT+GGG - chr8_4:32786786-32786805 None:intergenic 25.0%
! CTTCATTTCTCAAAAAACAA+AGG - chr8_4:32786795-32786814 None:intergenic 25.0%
!!! TTGTTTTTTGAGAAATGAAG+TGG + chr8_4:32786795-32786814 Msa1323940:intron 25.0%
! ATTCTGAATTGTTCAAAATC+TGG - chr8_4:32787007-32787026 None:intergenic 25.0%
!! GATTTTGAACAATTCAGAAT+TGG + chr8_4:32787007-32787026 Msa1323940:CDS 25.0%
! AAGTAGTTAAATACACCTTA+AGG - chr8_4:32788461-32788480 None:intergenic 25.0%
!! ACACCTTCTAAAAAATTAGT+GGG + chr8_4:32788503-32788522 Msa1323940:intron 25.0%
! ACACCTTATAGAAAATAAGT+GGG - chr8_4:32788568-32788587 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG - chr8_4:32788607-32788626 None:intergenic 25.0%
! ACACCTTAATAAAAACTAGT+GGG + chr8_4:32788650-32788669 Msa1323940:intron 25.0%
! TATATATAGCAAATGCCTAT+AGG + chr8_4:32788740-32788759 Msa1323940:intron 25.0%
!!! ACCCCACTTATTTTTTTATA+AGG + chr8_4:32788777-32788796 Msa1323940:intron 25.0%
! AAGTTGTTAAATACACCTTA+AGG - chr8_4:32788607-32788626 None:intergenic 25.0%
! ACACCTTAATAAAATCTAGT+GGG + chr8_4:32788865-32788884 Msa1323940:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - chr8_4:32789102-32789121 None:intergenic 25.0%
!!! ATAAGCAAAAATCCACTTTT+AGG + chr8_4:32789003-32789022 Msa1323940:intron 25.0%
! TAATTGAATGAACCTAAAAG+TGG - chr8_4:32789018-32789037 None:intergenic 25.0%
!!! ATGACCAAATAAAAAGTGTT+TGG + chr8_4:32789160-32789179 Msa1323940:intron 25.0%
! GTTTAGTTGTATACTTCAAA+AGG - chr8_4:32789354-32789373 None:intergenic 25.0%
ATTGAAGGTTGGAATTTAGA+CGG - chr8_4:32783896-32783915 None:intergenic 30.0%
CTAAATTCCAACCTTCAATT+TGG + chr8_4:32783897-32783916 Msa1323940:CDS 30.0%
TAATCATTGGTCCAAATTGA+AGG - chr8_4:32783911-32783930 None:intergenic 30.0%
TACAAAGTAACTTACTACCA+AGG - chr8_4:32784035-32784054 None:intergenic 30.0%
ATTGATGTATTGCAAAGGAT+TGG + chr8_4:32784194-32784213 Msa1323940:CDS 30.0%
CAAAGAAATTAGGGACATAT+TGG + chr8_4:32784235-32784254 Msa1323940:CDS 30.0%
! CATGTTTAGAACACTATGAA+AGG + chr8_4:32784592-32784611 Msa1323940:intron 30.0%
CTACAAAAAAATGATGCACT+CGG - chr8_4:32784852-32784871 None:intergenic 30.0%
!!! GAGTGCATCATTTTTTTGTA+GGG + chr8_4:32784851-32784870 Msa1323940:intron 30.0%
ACTTCTAATAAGTCATGCTT+TGG + chr8_4:32785190-32785209 Msa1323940:CDS 30.0%
TTTACTCCAATTCGCTAAAT+TGG + chr8_4:32785298-32785317 Msa1323940:CDS 30.0%
TGAAATCCAATTTAGCGAAT+TGG - chr8_4:32785307-32785326 None:intergenic 30.0%
! GTTGTATTGCTATTGTTAGA+GGG + chr8_4:32785794-32785813 Msa1323940:intron 30.0%
CATAATATATACAAGGGACA+TGG + chr8_4:32786177-32786196 Msa1323940:intron 30.0%
ATGTTAGAGAAGAGAATAAG+TGG - chr8_4:32786220-32786239 None:intergenic 30.0%
!! GACATAATTTTTGTTATGGG+AGG - chr8_4:32786366-32786385 None:intergenic 30.0%
!!! TTTCTTATTTTGTGCCCTAA+GGG + chr8_4:32786730-32786749 Msa1323940:intron 30.0%
! CTCAAAAAACAAAGGACTTT+TGG - chr8_4:32786787-32786806 None:intergenic 30.0%
! TTTTCTTCATTTTCAGATGG+TGG + chr8_4:32786894-32786913 Msa1323940:intron 30.0%
GAATTGTTGAGAACTTTGTT+TGG + chr8_4:32786960-32786979 Msa1323940:CDS 30.0%
ATCATCAACTGTGGTAATTA+AGG - chr8_4:32787050-32787069 None:intergenic 30.0%
! GATGATGTGTATGATTTGTA+TGG + chr8_4:32787064-32787083 Msa1323940:CDS 30.0%
AGCATATTTGCATGTAGTAT+GGG - chr8_4:32787256-32787275 None:intergenic 30.0%
AAGCATATTTGCATGTAGTA+TGG - chr8_4:32787257-32787276 None:intergenic 30.0%
AATCCTTAAAGAGTTCCATT+AGG + chr8_4:32787748-32787767 Msa1323940:intron 30.0%
ATCCTTAAAGAGTTCCATTA+GGG + chr8_4:32787749-32787768 Msa1323940:intron 30.0%
CATATTTGATAGAAGCAAAG+TGG + chr8_4:32787830-32787849 Msa1323940:CDS 30.0%
ATTTGCCATGTATTCTTCAA+CGG - chr8_4:32787878-32787897 None:intergenic 30.0%
TTGAAGAATACATGGCAAAT+GGG + chr8_4:32787878-32787897 Msa1323940:CDS 30.0%
AAGACACCTTCATAAAAAGT+AGG + chr8_4:32788158-32788177 Msa1323940:intron 30.0%
AGACACCTTCATAAAAAGTA+GGG + chr8_4:32788159-32788178 Msa1323940:intron 30.0%
ACACCTTCATAAAAAGTAGT+TGG + chr8_4:32788250-32788269 Msa1323940:intron 30.0%
!!! ACACCAACTACTTTTTATGA+AGG - chr8_4:32788256-32788275 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr8_4:32788305-32788324 Msa1323940:intron 30.0%
! TTTTAGCAATCTACACCTTA+AGG + chr8_4:32788443-32788462 Msa1323940:intron 30.0%
! CACACCTTCTAAAAAATTAG+TGG + chr8_4:32788502-32788521 Msa1323940:intron 30.0%
!!! ACACCCACTAATTTTTTAGA+AGG - chr8_4:32788509-32788528 None:intergenic 30.0%
!! ACACCCACTTATTTTCTATA+AGG + chr8_4:32788562-32788581 Msa1323940:intron 30.0%
CACACCTTATAGAAAATAAG+TGG - chr8_4:32788569-32788588 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG + chr8_4:32788589-32788608 Msa1323940:intron 30.0%
CACACCTTAATAAAAACTAG+TGG + chr8_4:32788649-32788668 Msa1323940:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG - chr8_4:32788656-32788675 None:intergenic 30.0%
! ATATATATATGGGGTTTGCT+AGG - chr8_4:32788681-32788700 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG + chr8_4:32788589-32788608 Msa1323940:intron 30.0%
CACACCTTAATAAAATCTAG+TGG + chr8_4:32788864-32788883 Msa1323940:intron 30.0%
! ACACCCACTAGATTTTATTA+AGG - chr8_4:32788871-32788890 None:intergenic 30.0%
!! GTGACCAAACACTTTTTATT+TGG - chr8_4:32789167-32789186 None:intergenic 30.0%
! GTGTTCAAACACTATTGATT+TGG + chr8_4:32789277-32789296 Msa1323940:intron 30.0%
! ATATACGAGGTATTCTTACA+TGG - chr8_4:32789311-32789330 None:intergenic 30.0%
CATCGTATCATATATATACG+AGG - chr8_4:32789324-32789343 None:intergenic 30.0%
TTAAAGAGTGAAAATGAGAC+AGG + chr8_4:32789412-32789431 Msa1323940:intron 30.0%
AAATGCATTATGAACGAAAC+TGG + chr8_4:32789454-32789473 Msa1323940:CDS 30.0%
!!! CGATTCTGAATTTTAGAATC+TGG - chr8_4:32789652-32789671 None:intergenic 30.0%
TTGCATGTTGCTAGAGATAA+CGG - chr8_4:32783794-32783813 None:intergenic 35.0%
TATGATGCCTTGCATTGAAT+TGG - chr8_4:32783833-32783852 None:intergenic 35.0%
TTCAAGCAATTACTAGTCCT+TGG + chr8_4:32784015-32784034 Msa1323940:intron 35.0%
! AGATCAACGCAAAGTTCTAA+GGG + chr8_4:32784115-32784134 Msa1323940:CDS 35.0%
CATGGTTATGAGATATCTAC+AGG + chr8_4:32784338-32784357 Msa1323940:CDS 35.0%
!!! CGAGTGCATCATTTTTTTGT+AGG + chr8_4:32784850-32784869 Msa1323940:intron 35.0%
CTTTGGATCTTCCATTGAAT+TGG + chr8_4:32785207-32785226 Msa1323940:CDS 35.0%
CGAGAAATTGTCCAATTCAA+TGG - chr8_4:32785221-32785240 None:intergenic 35.0%
!! ATGCACACTTTAGTTCTTCT+AGG - chr8_4:32785349-32785368 None:intergenic 35.0%
AAGAACTAAAGTGTGCATCA+AGG + chr8_4:32785351-32785370 Msa1323940:CDS 35.0%
GAAATGTTAACTAGTGCTCT+CGG + chr8_4:32785503-32785522 Msa1323940:intron 35.0%
ATCAACATGAGTCTCGTTAA+CGG - chr8_4:32785657-32785676 None:intergenic 35.0%
! CGTTGTATTGCTATTGTTAG+AGG + chr8_4:32785793-32785812 Msa1323940:intron 35.0%
AGATGACACCTAATTTGAGA+TGG + chr8_4:32785848-32785867 Msa1323940:intron 35.0%
TGTGAGTTTAGATCAGTTGA+TGG + chr8_4:32786146-32786165 Msa1323940:intron 35.0%
!!! GTTTCTTATTTTGTGCCCTA+AGG + chr8_4:32786729-32786748 Msa1323940:intron 35.0%
!! CTTTGACTTTTGTTCCAACT+GGG - chr8_4:32786828-32786847 None:intergenic 35.0%
!! TCTTTGACTTTTGTTCCAAC+TGG - chr8_4:32786829-32786848 None:intergenic 35.0%
GTCAAAGAATTGAGAGAGAT+TGG + chr8_4:32786841-32786860 Msa1323940:intron 35.0%
TAGAAAAACTGAGCTTTGCT+AGG + chr8_4:32786933-32786952 Msa1323940:CDS 35.0%
AGAAAAACTGAGCTTTGCTA+GGG + chr8_4:32786934-32786953 Msa1323940:CDS 35.0%
! GAGAACTTTGTTTGGAATGT+TGG + chr8_4:32786968-32786987 Msa1323940:CDS 35.0%
ATCATACACATCATCAACTG+TGG - chr8_4:32787059-32787078 None:intergenic 35.0%
TCTTCACAGAAGCTATTGAT+AGG + chr8_4:32787107-32787126 Msa1323940:CDS 35.0%
! TTGTGTTTGGTGATTCTAGA+TGG + chr8_4:32787207-32787226 Msa1323940:intron 35.0%
! TGTGTTTGGTGATTCTAGAT+GGG + chr8_4:32787208-32787227 Msa1323940:intron 35.0%
CATGCAAATATGCTTTCATG+CGG + chr8_4:32787262-32787281 Msa1323940:CDS 35.0%
GCAACTTTGCACATGTTAAA+AGG - chr8_4:32787546-32787565 None:intergenic 35.0%
AAATGTTAACAAGTGCCCTT+AGG + chr8_4:32787619-32787638 Msa1323940:intron 35.0%
AATGTTAACAAGTGCCCTTA+GGG + chr8_4:32787620-32787639 Msa1323940:intron 35.0%
GTTACTAAACAATGCCCTAA+GGG - chr8_4:32787637-32787656 None:intergenic 35.0%
AGTTACTAAACAATGCCCTA+AGG - chr8_4:32787638-32787657 None:intergenic 35.0%
GTTGAAGAATACATGGCAAA+TGG + chr8_4:32787877-32787896 Msa1323940:CDS 35.0%
TCTTCCATTTCGATTGAATG+TGG - chr8_4:32787955-32787974 None:intergenic 35.0%
TTCAATCGAAATGGAAGACT+TGG + chr8_4:32787957-32787976 Msa1323940:CDS 35.0%
ACACACACACAATGTTAAGT+TGG - chr8_4:32788071-32788090 None:intergenic 35.0%
! TTTTATCAAGTCACACCTCA+AGG + chr8_4:32788189-32788208 Msa1323940:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG - chr8_4:32788207-32788226 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr8_4:32788318-32788337 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr8_4:32788416-32788435 Msa1323940:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr8_4:32788422-32788441 None:intergenic 35.0%
TGTATGTTAGCAACTCCTAT+AGG - chr8_4:32788545-32788564 None:intergenic 35.0%
TGTATGTTAGCAACTCCTAT+AGG - chr8_4:32788545-32788564 None:intergenic 35.0%
TGCTTATATTAGTGACGAGA+TGG + chr8_4:32789106-32789125 Msa1323940:intron 35.0%
ATAATCACGAGCCTCTATTT+CGG - chr8_4:32789485-32789504 None:intergenic 35.0%
AGTCCATGATGTCTACATTA+TGG + chr8_4:32789509-32789528 Msa1323940:CDS 35.0%
CTTCCATAATGTAGACATCA+TGG - chr8_4:32789515-32789534 None:intergenic 35.0%
TGTATGTTCATGTACCAGTA+TGG + chr8_4:32789610-32789629 Msa1323940:CDS 35.0%
!!! AGGAGAAAGCGTTTTGATCA+AGG - chr8_4:32783762-32783781 None:intergenic 40.0%
AAACGCTTTCTCCTAACAAC+CGG + chr8_4:32783768-32783787 Msa1323940:CDS 40.0%
CATTGGTCCAAATTGAAGGT+TGG - chr8_4:32783907-32783926 None:intergenic 40.0%
GAGATCAACGCAAAGTTCTA+AGG + chr8_4:32784114-32784133 Msa1323940:CDS 40.0%
GGACAGTTTGTAGATGTTCA+TGG + chr8_4:32785041-32785060 Msa1323940:CDS 40.0%
GACTTATTAGAAGTGACACG+TGG - chr8_4:32785184-32785203 None:intergenic 40.0%
GACGGAGACAGTATCAATTA+AGG - chr8_4:32785417-32785436 None:intergenic 40.0%
TACTGTCTCCGTCTCAAATT+AGG + chr8_4:32785424-32785443 Msa1323940:intron 40.0%
! ACACCTAATTTGAGATGGAG+AGG + chr8_4:32785853-32785872 Msa1323940:intron 40.0%
GTACCTCTCCATCTCAAATT+AGG - chr8_4:32785859-32785878 None:intergenic 40.0%
CTCTCATAATTGTGCCCTTA+GGG - chr8_4:32786747-32786766 None:intergenic 40.0%
TCTCTCATAATTGTGCCCTT+AGG - chr8_4:32786748-32786767 None:intergenic 40.0%
TAGATGGGATTTGAATGCCT+TGG + chr8_4:32787223-32787242 Msa1323940:intron 40.0%
CTTACTGCTTTCTTCAGGTA+CGG - chr8_4:32787353-32787372 None:intergenic 40.0%
AGTTGCTTACTGCTTTCTTC+AGG - chr8_4:32787358-32787377 None:intergenic 40.0%
TGCCCTAATGGAACTCTTTA+AGG - chr8_4:32787754-32787773 None:intergenic 40.0%
GAAGCAAAGTGGTACTATAG+TGG + chr8_4:32787841-32787860 Msa1323940:CDS 40.0%
TCCAACCGTTGAAGAATACA+TGG + chr8_4:32787870-32787889 Msa1323940:CDS 40.0%
AAATACAGCATGTGCACCTA+TGG - chr8_4:32787911-32787930 None:intergenic 40.0%
! TGGCATCGAAAAGTAACCAT+GGG - chr8_4:32787935-32787954 None:intergenic 40.0%
GATGCCACATTCAATCGAAA+TGG + chr8_4:32787948-32787967 Msa1323940:CDS 40.0%
GTCATTAGCAACTCTTGCAA+TGG - chr8_4:32788025-32788044 None:intergenic 40.0%
GCAAGAGTTGCTAATGACTA+CGG + chr8_4:32788027-32788046 Msa1323940:CDS 40.0%
CAAGAGTTGCTAATGACTAC+GGG + chr8_4:32788028-32788047 Msa1323940:CDS 40.0%
CACCTTCATAAAAAGTAGGG+TGG + chr8_4:32788162-32788181 Msa1323940:intron 40.0%
!!! CACCACCCTACTTTTTATGA+AGG - chr8_4:32788167-32788186 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr8_4:32788415-32788434 Msa1323940:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr8_4:32788423-32788442 None:intergenic 40.0%
GTATCCTAGCAAATGCCTAT+AGG + chr8_4:32788527-32788546 Msa1323940:intron 40.0%
AACTCCTATAGGCATTTGCT+AGG - chr8_4:32788534-32788553 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr8_4:32788990-32789009 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr8_4:32788991-32789010 None:intergenic 40.0%
TGCTATAAGCATCTCCATAC+TGG - chr8_4:32789627-32789646 None:intergenic 40.0%
ACTGGGGGAGAAGCAAATAT+GGG - chr8_4:32783737-32783756 None:intergenic 45.0%
AACTGGGGGAGAAGCAAATA+TGG - chr8_4:32783738-32783757 None:intergenic 45.0%
!! GTTTTGATCAAGGCAACTGG+GGG - chr8_4:32783752-32783771 None:intergenic 45.0%
!! CGTTTTGATCAAGGCAACTG+GGG - chr8_4:32783753-32783772 None:intergenic 45.0%
!! GCGTTTTGATCAAGGCAACT+GGG - chr8_4:32783754-32783773 None:intergenic 45.0%
!! AGCGTTTTGATCAAGGCAAC+TGG - chr8_4:32783755-32783774 None:intergenic 45.0%
! ATGTTGCTAGAGATAACGGC+CGG - chr8_4:32783790-32783809 None:intergenic 45.0%
CCTTGCATTGAATTGGACGA+GGG - chr8_4:32783826-32783845 None:intergenic 45.0%
CACTCAAGTTCAGACTCTTG+AGG + chr8_4:32784312-32784331 Msa1323940:CDS 45.0%
TTCAGACTCTTGAGGCAACA+TGG + chr8_4:32784320-32784339 Msa1323940:CDS 45.0%
! TTGGACAATTTCTCGACTCG+AGG + chr8_4:32785226-32785245 Msa1323940:CDS 45.0%
!! AATGGTTAAAGAGTGTCCCG+AGG + chr8_4:32785628-32785647 Msa1323940:intron 45.0%
!! ATGGTTAAAGAGTGTCCCGA+GGG + chr8_4:32785629-32785648 Msa1323940:intron 45.0%
! GTATGATTTGTATGGCACCC+TGG + chr8_4:32787072-32787091 Msa1323940:CDS 45.0%
GAAGAGCTCAAGTTCTTCCA+GGG - chr8_4:32787092-32787111 None:intergenic 45.0%
TGAAGAGCTCAAGTTCTTCC+AGG - chr8_4:32787093-32787112 None:intergenic 45.0%
GTAGTATGGGAGAGAATCCA+AGG - chr8_4:32787243-32787262 None:intergenic 45.0%
CTTGTTAACGAGTGCCCTAA+TGG - chr8_4:32787766-32787785 None:intergenic 45.0%
GCCATGTATTCTTCAACGGT+TGG - chr8_4:32787874-32787893 None:intergenic 45.0%
GCAAATGGGTGTGTATCCAT+AGG + chr8_4:32787892-32787911 Msa1323940:CDS 45.0%
GCACATGCTGTATTTACCCA+TGG + chr8_4:32787916-32787935 Msa1323940:CDS 45.0%
! GTGGCATCGAAAAGTAACCA+TGG - chr8_4:32787936-32787955 None:intergenic 45.0%
! ATGGAAGACTTGGTTCGCTT+AGG + chr8_4:32787967-32787986 Msa1323940:CDS 45.0%
! TGGAAGACTTGGTTCGCTTA+GGG + chr8_4:32787968-32787987 Msa1323940:CDS 45.0%
TGCTGTCAGGCGAATTATGT+TGG - chr8_4:32788001-32788020 None:intergenic 45.0%
AACTGGAGCTTCCGAAATAG+AGG + chr8_4:32789471-32789490 Msa1323940:CDS 45.0%
!! AATTTAATTAAATTATTACA+CGG - chr8_4:32784074-32784093 None:intergenic 5.0%
!! AAATAAAAAAATAAAAAAAC+TGG + chr8_4:32784401-32784420 Msa1323940:intron 5.0%
!!! TAAATATGTATTTTTTTATA+GGG - chr8_4:32784954-32784973 None:intergenic 5.0%
!!! ATAAATATGTATTTTTTTAT+AGG - chr8_4:32784955-32784974 None:intergenic 5.0%
!!! TTTTATTTTTTAATTTTACA+CGG + chr8_4:32785448-32785467 Msa1323940:intron 5.0%
!! TTATAAAAAATTGTAATTTA+AGG - chr8_4:32785539-32785558 None:intergenic 5.0%
!! AATAATTACTTAATTTAAAA+TGG + chr8_4:32785610-32785629 Msa1323940:intron 5.0%
!!! TTAAAATTTCAAAATTTTTT+TGG + chr8_4:32786480-32786499 Msa1323940:intron 5.0%
!!! TAAAATTTCAAAATTTTTTT+GGG + chr8_4:32786481-32786500 Msa1323940:intron 5.0%
!! TAAAAAATATCATTATTTAA+CGG - chr8_4:32787139-32787158 None:intergenic 5.0%
!! ATATATATATATATGTATAT+GGG - chr8_4:32788346-32788365 None:intergenic 5.0%
!! TATATATATATATATGTATA+TGG - chr8_4:32788347-32788366 None:intergenic 5.0%
!! ATATATATATATATATATAG+GGG + chr8_4:32788127-32788146 Msa1323940:intron 5.0%
!! TATATATATATATATATATG+GGG - chr8_4:32788351-32788370 None:intergenic 5.0%
!! TATATATATATATATATATG+GGG - chr8_4:32788351-32788370 None:intergenic 5.0%
!!! ATATTTTTTTAATTATAAAG+AGG + chr8_4:32789201-32789220 Msa1323940:intron 5.0%
TGGGGGAGAAGCAAATATGG+GGG - chr8_4:32783735-32783754 None:intergenic 50.0%
CTGGGGGAGAAGCAAATATG+GGG - chr8_4:32783736-32783755 None:intergenic 50.0%
! AGAGATAACGGCCGGTTGTT+AGG - chr8_4:32783782-32783801 None:intergenic 50.0%
CCCTCGTCCAATTCAATGCA+AGG + chr8_4:32783823-32783842 Msa1323940:CDS 50.0%
GCCTTGCATTGAATTGGACG+AGG - chr8_4:32783827-32783846 None:intergenic 50.0%
! GAGTCTGAACTTGAGTGCTG+TGG - chr8_4:32784309-32784328 None:intergenic 50.0%
GAAGTGGATCTTGACCCAGT+TGG + chr8_4:32786811-32786830 Msa1323940:intron 50.0%
! GGAAGACTTGGTTCGCTTAG+GGG + chr8_4:32787969-32787988 Msa1323940:CDS 50.0%
CTCTTGCAATGGTTGCTGTC+AGG - chr8_4:32788014-32788033 None:intergenic 50.0%
! TTTCTCGACTCGAGGCTCGA+TGG + chr8_4:32785234-32785253 Msa1323940:CDS 55.0%
AGTCTCGTTAACGGTGCCCT+CGG - chr8_4:32785648-32785667 None:intergenic 55.0%
GTCTCGTTAACGGTGCCCTC+GGG - chr8_4:32785647-32785666 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 32783725 32789715 32783725 ID=Msa1323940;Name=Msa1323940
chr8_4 mRNA 32783725 32789715 32783725 ID=Msa1323940-mRNA-1;Parent=Msa1323940;Name=Msa1323940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.28|1|1|1|7|10|588
chr8_4 exon 32783725 32783958 32783725 ID=Msa1323940-mRNA-1:exon:10682;Parent=Msa1323940-mRNA-1
chr8_4 exon 32784101 32784359 32784101 ID=Msa1323940-mRNA-1:exon:10683;Parent=Msa1323940-mRNA-1
chr8_4 exon 32784997 32785372 32784997 ID=Msa1323940-mRNA-1:exon:10684;Parent=Msa1323940-mRNA-1
chr8_4 exon 32786910 32787128 32786910 ID=Msa1323940-mRNA-1:exon:10685;Parent=Msa1323940-mRNA-1
chr8_4 exon 32787226 32787367 32787226 ID=Msa1323940-mRNA-1:exon:10686;Parent=Msa1323940-mRNA-1
chr8_4 exon 32787811 32788059 32787811 ID=Msa1323940-mRNA-1:exon:10687;Parent=Msa1323940-mRNA-1
chr8_4 exon 32789418 32789715 32789418 ID=Msa1323940-mRNA-1:exon:10688;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32783725 32783958 32783725 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32784101 32784359 32784101 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32784997 32785372 32784997 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32786910 32787128 32786910 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32787226 32787367 32787226 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32787811 32788059 32787811 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 CDS 32789418 32789705 32789418 ID=Msa1323940-mRNA-1:cds;Parent=Msa1323940-mRNA-1
chr8_4 three_prime_UTR 32789706 32789715 32789706 ID=Msa1323940-mRNA-1:three_prime_utr;Parent=Msa1323940-mRNA-1
Gene Sequence

>Msa1323940

ATGGCTTCCCCCATATTTGCTTCTCCCCCAGTTGCCTTGATCAAAACGCTTTCTCCTAACAACCGGCCGTTATCTCTAGCAACATGCAACTTCAACTTCCCTCGTCCAATTCAATGCAAGGCATCATATAAAGTTTCGAATGATCAAATTCAAACAATTTCTCGTCGACCGTCTAAATTCCAACCTTCAATTTGGACCAATGATTATATTCAGTCCTTAAGTAGTGAATATAAAGAAGAAATTTACGGAGATCAACGCAAAGTTCTAAGGGAAAAAGTAAGAATCATGTTGTGCAAAATAGAAAACGAGCTTGATCAACTTGAGTTTATTGATGTATTGCAAAGGATTGGAGTGTCTTACCATTTTAACAAAGAAATTAGGGACATATTGGACAACATATACAACAAACAAACATCAAAGTTGAAGAAGAACTTACATGCCACAGCACTCAAGTTCAGACTCTTGAGGCAACATGGTTATGAGATATCTACAGATTGTTTTGTTTGCTTTCAAAATGAAGTATGTAATTTTAAGAAAGGACAGTTTGTAGATGTTCATGGAATGTTGTCAATGTATGAAGCTTCTTTTCATTCGTTTGAAGATGAAACTATATTGGATGAAGCAAGAGATTTCACCACAAATTTTCTCAAAGAATATTTGAAACAAAATAGAGGCAACCACGTGTCACTTCTAATAAGTCATGCTTTGGATCTTCCATTGAATTGGACAATTTCTCGACTCGAGGCTCGATGGTTCATTAATATATACGAAAAACAGGAAAATAAGAATAATGTTTTACTCCAATTCGCTAAATTGGATTTCAACATTCTTCAGAACAACTACCTAGAAGAACTAAAGTGTGCATCAAGATGGTGGAAAGAAACTGCAATCGTAGAAAAACTGAGCTTTGCTAGGGATAGAATTGTTGAGAACTTTGTTTGGAATGTTGGAGCAAATTTCAAGCCAGATTTTGAACAATTCAGAATTGGTATGACAAAGATCAATGCCTTAATTACCACAGTTGATGATGTGTATGATTTGTATGGCACCCTGGAAGAACTTGAGCTCTTCACAGAAGCTATTGATAGATGGGATTTGAATGCCTTGGATTCTCTCCCATACTACATGCAAATATGCTTTCATGCGGTTTACAACTTCGTGAACGAAATTTCTTTTGAAAGCTTGAAAAAGAATGAGAAGTATATCACTACTCCGTACCTGAAGAAAGCATGGACAGATTTATGTAAAGCATATTTGATAGAAGCAAAGTGGTACTATAGTGGATATACTCCAACCGTTGAAGAATACATGGCAAATGGGTGTGTATCCATAGGTGCACATGCTGTATTTACCCATGGTTACTTTTCGATGCCACATTCAATCGAAATGGAAGACTTGGTTCGCTTAGGGGAAGACTCCAACATAATTCGCCTGACAGCAACCATTGCAAGAGTTGCTAATGACTACGGGTCGTATAAAAGTGAAAATGAGACAGGTGATACTCCAAAGTTAAATAAATGCATTATGAACGAAACTGGAGCTTCCGAAATAGAGGCTCGTGATTATATGAAGTCCATGATGTCTACATTATGGAAGAAGATGAATAAAGAAGCTCAAACTTCATCTTTCTCTCAAAATTTCATAGATACAAATATGAACGCATTTAGAATATGTATGTTCATGTACCAGTATGGAGATGCTTATAGCATTCCAGATTCTAAAATTCAGAATCGCATTATGTCATTAGTTTTTGAACCGATTCCCTGA
Protein sequence

>Msa1323940

MASPIFASPPVALIKTLSPNNRPLSLATCNFNFPRPIQCKASYKVSNDQIQTISRRPSKFQPSIWTNDYIQSLSSEYKEEIYGDQRKVLREKVRIMLCKIENELDQLEFIDVLQRIGVSYHFNKEIRDILDNIYNKQTSKLKKNLHATALKFRLLRQHGYEISTDCFVCFQNEVCNFKKGQFVDVHGMLSMYEASFHSFEDETILDEARDFTTNFLKEYLKQNRGNHVSLLISHALDLPLNWTISRLEARWFINIYEKQENKNNVLLQFAKLDFNILQNNYLEELKCASRWWKETAIVEKLSFARDRIVENFVWNVGANFKPDFEQFRIGMTKINALITTVDDVYDLYGTLEELELFTEAIDRWDLNALDSLPYYMQICFHAVYNFVNEISFESLKKNEKYITTPYLKKAWTDLCKAYLIEAKWYYSGYTPTVEEYMANGCVSIGAHAVFTHGYFSMPHSIEMEDLVRLGEDSNIIRLTATIARVANDYGSYKSENETGDTPKLNKCIMNETGASEIEARDYMKSMMSTLWKKMNKEAQTSSFSQNFIDTNMNAFRICMFMYQYGDAYSIPDSKIQNRIMSLVFEPIP*