AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243020 MtrunA17_Chr8g0357411 88.435 588 68 0 1 588 1 588 0.0 1103
Msa1243020 MtrunA17_Chr2g0310331 65.821 591 193 4 1 588 1 585 0.0 801
Msa1243020 MtrunA17_Chr2g0310401 63.318 428 155 2 162 588 5 431 0.0 571
Msa1243020 MtrunA17_Chr8g0357221 91.034 290 26 0 1 290 1 290 0.0 548
Msa1243020 MtrunA17_Chr8g0357231 96.124 258 10 0 331 588 1 258 0.0 522
Msa1243020 MtrunA17_Chr4g0023911 41.935 558 313 8 37 587 26 579 1.04e-145 433
Msa1243020 MtrunA17_Chr4g0042111 36.727 550 336 7 48 588 15 561 1.79e-112 347
Msa1243020 MtrunA17_Chr2g0323131 35.038 528 330 7 63 588 48 564 7.31e-104 325
Msa1243020 MtrunA17_Chr2g0323151 35.611 483 303 5 107 588 4 479 7.93e-101 314
Msa1243020 MtrunA17_Chr6g0465441 33.457 541 351 5 55 588 14 552 9.60e-99 311
Msa1243020 MtrunA17_Chr8g0336181 35.531 546 339 9 53 587 11 554 1.06e-96 306
Msa1243020 MtrunA17_Chr6g0451711 32.971 552 358 7 46 588 8 556 2.42e-96 305
Msa1243020 MtrunA17_Chr6g0466051 33.516 546 352 7 51 588 10 552 1.51e-95 303
Msa1243020 MtrunA17_Chr6g0465911 33.333 546 353 7 51 588 10 552 6.75e-95 301
Msa1243020 MtrunA17_Chr3g0082691 34.432 546 344 9 53 588 11 552 2.55e-94 300
Msa1243020 MtrunA17_Chr2g0319041 32.616 558 339 10 53 587 12 555 3.30e-94 299
Msa1243020 MtrunA17_Chr7g0236991 33.212 551 359 6 45 588 4 552 4.25e-94 299
Msa1243020 MtrunA17_Chr4g0024691 34.182 550 349 8 48 588 15 560 4.58e-94 299
Msa1243020 MtrunA17_Chr7g0237001 33.031 551 360 6 45 588 4 552 1.82e-93 297
Msa1243020 MtrunA17_Chr7g0237041 33.031 551 360 6 45 588 4 552 1.82e-93 297
Msa1243020 MtrunA17_Chr7g0237081 33.031 551 360 6 45 588 4 552 1.82e-93 297
Msa1243020 MtrunA17_Chr7g0237051 33.031 551 360 6 45 588 4 552 1.82e-93 297
Msa1243020 MtrunA17_Chr5g0425371 33.333 552 357 7 45 588 4 552 4.95e-93 296
Msa1243020 MtrunA17_Chr6g0465851 33.529 510 331 5 85 588 10 517 7.11e-92 292
Msa1243020 MtrunA17_Chr2g0319051 33.918 513 325 8 85 587 4 512 7.19e-92 292
Msa1243020 MtrunA17_Chr3g0105071 33.945 545 346 9 53 587 15 555 1.25e-91 293
Msa1243020 MtrunA17_Chr5g0431651 34.182 550 347 9 50 588 6 551 2.55e-91 291
Msa1243020 MtrunA17_Chr5g0431571 33.883 546 345 10 53 587 7 547 1.37e-89 287
Msa1243020 MtrunA17_Chr7g0236961 34.068 499 322 4 95 588 1 497 2.32e-89 285
Msa1243020 MtrunA17_Chr7g0237011 33.667 499 324 4 95 588 1 497 1.80e-88 283
Msa1243020 MtrunA17_Chr4g0048911 32.184 522 331 11 74 583 44 554 1.47e-84 275
Msa1243020 MtrunA17_Chr4g0008621 37.221 403 234 5 55 443 20 417 3.99e-84 269
Msa1243020 MtrunA17_Chr4g0048921 32.797 497 316 9 101 587 81 569 1.64e-79 261
Msa1243020 MtrunA17_Chr6g0465981 38.692 367 216 5 51 410 10 374 9.03e-78 251
Msa1243020 MtrunA17_Chr6g0465871 38.692 367 216 5 51 410 10 374 9.03e-78 251
Msa1243020 MtrunA17_Chr6g0466081 38.692 367 216 5 51 410 10 374 9.03e-78 251
Msa1243020 MtrunA17_Chr6g0465931 39.577 331 194 3 85 410 10 339 1.09e-74 241
Msa1243020 MtrunA17_Chr6g0466111 39.577 331 194 3 85 410 10 339 1.47e-74 241
Msa1243020 MtrunA17_Chr2g0280581 30.426 516 342 9 82 583 5 517 1.21e-72 241
Msa1243020 MtrunA17_Chr3g0108941 30.078 512 340 10 85 583 7 513 2.94e-72 241
Msa1243020 MtrunA17_Chr3g0109001 30.078 512 340 10 85 583 7 513 9.31e-72 239
Msa1243020 MtrunA17_Chr7g0236951 40.252 318 184 3 95 408 1 316 1.35e-70 230
Msa1243020 MtrunA17_Chr3g0109031 29.216 510 346 9 85 583 7 512 2.05e-70 236
Msa1243020 MtrunA17_Chr7g0237031 39.623 318 186 3 95 408 1 316 1.14e-69 228
Msa1243020 MtrunA17_Chr6g0477111 30.658 486 322 9 109 583 6 487 1.88e-69 232
Msa1243020 MtrunA17_Chr3g0109021 28.963 511 346 10 85 583 7 512 3.22e-69 233
Msa1243020 MtrunA17_Chr3g0105691 29.354 511 344 10 85 583 40 545 5.19e-69 233
Msa1243020 MtrunA17_Chr3g0099031 29.767 514 338 10 85 583 7 512 5.71e-69 232
Msa1243020 MtrunA17_Chr3g0108981 29.979 487 325 9 109 583 6 488 1.54e-68 230
Msa1243020 MtrunA17_Chr3g0108961 29.979 487 325 9 109 583 6 488 1.54e-68 230
Msa1243020 MtrunA17_Chr3g0108991 29.020 510 347 9 85 583 7 512 2.54e-68 230
Msa1243020 MtrunA17_Chr3g0108951 29.020 510 347 9 85 583 7 512 2.54e-68 230
Msa1243020 MtrunA17_Chr7g0236971 33.582 402 264 3 188 588 1 400 1.44e-67 224
Msa1243020 MtrunA17_Chr3g0109011 29.630 486 327 9 109 583 6 487 1.04e-66 225
Msa1243020 MtrunA17_Chr3g0108971 29.424 486 328 9 109 583 6 487 5.80e-66 223
Msa1243020 MtrunA17_Chr7g0217361 35.099 302 191 3 288 586 8 307 8.81e-65 214
Msa1243020 MtrunA17_Chr6g0477121 31.127 408 270 8 166 564 8 413 1.17e-58 202
Msa1243020 MtrunA17_Chr2g0310411 58.683 167 64 3 1 164 1 165 1.37e-54 182
Msa1243020 MtrunA17_Chr5g0445511 40.664 241 141 2 183 423 1 239 2.44e-52 179
Msa1243020 MtrunA17_Chr2g0319071 28.107 523 298 13 85 587 23 487 1.05e-50 182
Msa1243020 MtrunA17_Chr2g0319081 29.969 327 204 8 267 587 118 425 9.90e-41 153
Msa1243020 MtrunA17_Chr2g0319081 37.500 120 63 5 55 164 20 137 2.22e-12 69.3
Msa1243020 MtrunA17_Chr2g0310121 27.635 427 273 12 106 505 275 692 3.05e-38 150
Msa1243020 MtrunA17_Chr3g0101681 27.152 453 290 15 106 527 276 719 3.75e-38 150
Msa1243020 MtrunA17_Chr7g0237071 37.561 205 119 3 95 291 1 204 2.85e-34 129
Msa1243020 MtrunA17_Chr6g0466031 28.185 259 184 2 331 588 2 259 8.30e-31 121
Msa1243020 MtrunA17_Chr2g0281651 30.483 269 178 5 266 533 43 303 1.47e-29 121
Msa1243020 MtrunA17_Chr6g0466021 36.788 193 113 5 51 236 10 200 1.64e-27 110
Msa1243020 MtrunA17_Chr7g0237061 27.413 259 163 3 331 588 2 236 2.14e-27 110
Msa1243020 MtrunA17_Chr7g0217351 34.021 194 119 4 104 291 83 273 2.32e-26 109
Msa1243020 MtrunA17_Chr7g0233861 40.741 135 71 1 229 363 33 158 1.02e-22 95.9
Msa1243020 MtrunA17_Chr7g0218001 28.626 262 156 5 109 340 349 609 2.34e-22 102
Msa1243020 MtrunA17_Chr7g0259881 25.275 273 161 6 110 346 233 498 1.12e-19 93.2
Msa1243020 MtrunA17_Chr7g0218041 27.615 239 149 5 150 365 1 238 2.35e-16 81.6
Msa1243020 MtrunA17_Chr7g0236981 29.231 130 86 3 45 168 4 133 4.76e-12 63.9
Msa1243020 MtrunA17_Chr5g0445501 25.581 172 125 3 419 588 1 171 3.65e-11 62.4
Msa1243020 MtrunA17_Chr5g0445401 44.048 84 46 1 202 284 5 88 8.34e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243020 AT3G25820.1 42.857 581 308 12 28 588 17 593 3.18e-157 464
Msa1243020 AT3G25830.1 42.857 581 308 12 28 588 17 593 3.18e-157 464
Msa1243020 AT2G24210.1 43.525 556 294 11 48 588 39 589 2.68e-155 458
Msa1243020 AT3G25810.1 42.222 585 305 15 30 588 19 596 2.02e-146 436
Msa1243020 AT4G16730.1 40.935 535 299 6 70 588 5 538 6.27e-146 432
Msa1243020 AT4G16740.1 40.000 550 306 7 53 588 24 563 2.36e-143 427
Msa1243020 AT4G16730.2 41.379 493 275 5 109 588 1 492 4.72e-139 413
Msa1243020 AT3G25820.2 42.892 415 219 9 28 428 17 427 9.83e-107 328
Msa1243020 AT4G16740.2 41.081 370 200 4 53 410 24 387 6.30e-94 294
Msa1243020 AT5G23960.2 31.492 543 362 6 53 588 5 544 3.47e-89 286
Msa1243020 AT5G23960.1 31.743 545 360 7 53 588 5 546 1.51e-88 285
Msa1243020 AT1G61680.1 33.538 489 316 6 95 577 82 567 3.28e-87 281
Msa1243020 AT1G61680.2 33.538 489 309 7 95 577 82 560 1.40e-86 280
Msa1243020 AT3G25820.4 41.484 364 192 9 28 377 17 373 4.39e-85 271
Msa1243020 AT3G25820.3 41.484 364 192 9 28 377 17 373 4.39e-85 271
Msa1243020 AT3G14520.1 30.500 600 399 11 2 588 9 603 6.99e-81 266
Msa1243020 AT4G16740.4 41.486 323 172 3 53 363 24 341 6.17e-80 256
Msa1243020 AT4G16740.3 41.486 323 172 3 53 363 24 341 6.17e-80 256
Msa1243020 AT1G31950.1 29.851 603 401 10 2 588 9 605 9.16e-80 263
Msa1243020 AT1G31950.3 30.167 600 404 9 2 588 9 606 1.53e-79 263
Msa1243020 AT3G14540.1 29.933 598 401 10 1 588 11 600 1.57e-78 259
Msa1243020 AT1G70080.1 29.739 575 390 7 25 587 37 609 9.62e-78 258
Msa1243020 AT3G29410.1 28.967 542 377 7 54 588 62 602 3.07e-71 240
Msa1243020 AT1G33750.1 28.983 590 398 11 10 588 23 602 1.82e-69 236
Msa1243020 AT3G32030.1 28.988 583 399 11 15 588 27 603 2.85e-69 235
Msa1243020 AT3G29410.2 29.098 488 341 4 105 588 11 497 1.09e-68 231
Msa1243020 AT3G14540.2 30.539 501 332 9 1 493 11 503 4.10e-68 229
Msa1243020 AT1G31950.2 30.616 503 336 8 2 493 9 509 9.13e-68 229
Msa1243020 AT3G14490.1 29.401 551 376 9 48 588 53 600 1.78e-66 228
Msa1243020 AT4G15870.1 26.776 549 379 8 49 587 61 596 2.85e-62 216
Msa1243020 AT3G29110.1 28.924 567 388 11 33 587 32 595 5.24e-62 215
Msa1243020 AT5G44630.1 29.132 484 336 5 110 587 73 555 1.25e-61 213
Msa1243020 AT3G29190.1 28.767 584 389 12 15 588 34 600 1.76e-57 203
Msa1243020 AT4G13300.1 26.519 543 381 11 58 587 15 552 3.97e-55 196
Msa1243020 AT4G20200.1 26.748 572 398 11 32 587 36 602 2.56e-54 194
Msa1243020 AT4G20210.1 26.246 602 413 12 2 587 12 598 6.12e-54 194
Msa1243020 AT4G13280.2 26.947 475 340 6 119 587 79 552 2.20e-52 188
Msa1243020 AT2G23230.2 27.206 544 380 8 55 585 56 596 3.02e-52 189
Msa1243020 AT2G23230.1 27.122 542 378 9 55 585 56 591 3.00e-51 186
Msa1243020 AT4G20230.2 25.755 563 392 11 37 582 57 610 4.62e-51 186
Msa1243020 AT4G20230.1 25.755 563 392 11 37 582 45 598 6.00e-51 185
Msa1243020 AT1G48800.1 27.737 548 367 11 54 582 62 599 2.55e-50 184
Msa1243020 AT1G66020.1 26.280 586 409 14 18 587 18 596 5.20e-47 174
Msa1243020 AT1G48820.1 26.000 550 361 10 42 585 51 560 3.67e-45 168
Msa1243020 AT4G13280.1 26.737 475 311 9 119 587 79 522 6.87e-44 164
Msa1243020 AT1G66020.2 29.730 370 244 11 37 397 39 401 3.46e-39 149
Msa1243020 AT5G48110.1 27.273 341 241 6 249 587 2 337 4.70e-36 138
Msa1243020 AT1G79460.1 24.466 515 345 13 106 587 274 777 3.64e-34 139
Msa1243020 AT1G61120.1 26.490 453 282 13 100 521 279 711 7.64e-32 132
Msa1243020 AT4G02780.1 26.812 276 155 7 104 341 329 595 3.54e-19 92.4

Find 90 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAATTTCTTTGTTAAAA+TGG 0.095292 8_2:-27977397 None:intergenic
TTTACTCCAATTCGCTAAAT+TGG 0.181502 8_2:+27978507 Msa1243020:CDS
CTAAGTTCCAACCTTCAATT+TGG 0.205079 8_2:+27977086 Msa1243020:CDS
GTTTGAAGATGAAACTATAT+TGG 0.261667 8_2:+27978306 Msa1243020:CDS
CTTTGGATCTTCCATTGAAT+TGG 0.264293 8_2:+27978416 Msa1243020:CDS
ATTCTGAATTGTTCAAAATC+TGG 0.272530 8_2:-27980213 None:intergenic
ATGCACACTTTAGTTCTTCT+AGG 0.272677 8_2:-27978555 None:intergenic
ATCATCAACTGTGGTAATTA+AGG 0.283666 8_2:-27980256 None:intergenic
AGTATATTGCACAACACTTC+AGG 0.309519 8_2:-27982755 None:intergenic
GTCATTAAGTAGTGAATATA+AGG 0.311971 8_2:+27977126 Msa1243020:CDS
AAGCATATTTGCATGTAGTA+TGG 0.312552 8_2:-27980463 None:intergenic
TGAAATCCAATTTAGCGAAT+TGG 0.313439 8_2:-27978513 None:intergenic
AGTTGCTTACTGCTTTCTTC+AGG 0.318825 8_2:-27980564 None:intergenic
TATGATGCCTTACATTGAAT+TGG 0.325897 8_2:-27977019 None:intergenic
CAAAGAAATTAGGGACATAT+TGG 0.340628 8_2:+27977406 Msa1243020:CDS
AGTCCATGATGTCTACATTA+TGG 0.344971 8_2:+27982563 Msa1243020:CDS
AAATGCATTATGAACGAAAC+TGG 0.357987 8_2:+27982508 Msa1243020:CDS
TGAAGAGCTCAAGTTCTTCC+AGG 0.364896 8_2:-27980299 None:intergenic
ATGGAAGACTTGGTTCGTTT+AGG 0.382342 8_2:+27981178 Msa1243020:CDS
CCCTCGTCCAATTCAATGTA+AGG 0.384127 8_2:+27977012 Msa1243020:CDS
ATAATCACGAGCCTCTATTT+CGG 0.397407 8_2:-27982536 None:intergenic
GGACAGTTTGTAGATGTTCA+TGG 0.404960 8_2:+27978250 Msa1243020:CDS
ACTTCTAATAAGTCATGCTT+TGG 0.407606 8_2:+27978399 Msa1243020:CDS
ATTGAAGGTTGGAACTTAGA+AGG 0.417748 8_2:-27977082 None:intergenic
GAATTGTTGAGAACTTTGTT+TGG 0.420249 8_2:+27980169 Msa1243020:CDS
ATATTCTTTGAGAAAATTTG+TGG 0.422729 8_2:-27978347 None:intergenic
TTAATGCAGGAAGAAATTTA+CGG 0.426943 8_2:+27977263 Msa1243020:intron
GTTGAAGAATACATGGCAAA+TGG 0.426945 8_2:+27981088 Msa1243020:CDS
TGTATGTTCATGTACCAGTA+TGG 0.427645 8_2:+27982664 Msa1243020:CDS
TGCTATAAGCATCTCCATAC+TGG 0.428412 8_2:-27982678 None:intergenic
ATAATGCATTTATTTAACTT+TGG 0.429400 8_2:-27982496 None:intergenic
GAGAACTTTGTTTGGAATGT+TGG 0.432073 8_2:+27980177 Msa1243020:CDS
CTCTTGCAATGGTTGCTGTC+AGG 0.432621 8_2:-27981222 None:intergenic
CGAGAAATTGTCCAATTCAA+TGG 0.434579 8_2:-27978427 None:intergenic
GATGCCACATTCAATCGAAA+TGG 0.438499 8_2:+27981159 Msa1243020:CDS
ATTGATGTATTGCAAAGGAT+TGG 0.446275 8_2:+27977365 Msa1243020:CDS
AGAGATAACGACCGGTTGTT+GGG 0.450606 8_2:-27976968 None:intergenic
TCTTCACAGAAGCTATTGAT+AGG 0.451974 8_2:+27980316 Msa1243020:CDS
TAGATGGGATTTGAATGCCT+TGG 0.458301 8_2:+27980432 Msa1243020:intron
TTAAAGAGTGAAAATGAGAC+AGG 0.459331 8_2:+27982466 Msa1243020:intron
TGCACAACACTTCAGGGAAT+CGG 0.460962 8_2:-27982748 None:intergenic
AAATACAGCATGTGCACCTA+TGG 0.461919 8_2:-27981119 None:intergenic
TTAATGACTGAATATAATCA+TGG 0.468003 8_2:-27977111 None:intergenic
TAGAGATAACGACCGGTTGT+TGG 0.474755 8_2:-27976969 None:intergenic
GATGATGTGTATGATTTGTA+TGG 0.476992 8_2:+27980273 Msa1243020:CDS
GAGATCAACGCAAAGTACTA+AGG 0.480926 8_2:+27977285 Msa1243020:CDS
TAATCATGGGTCCAAATTGA+AGG 0.481085 8_2:-27977097 None:intergenic
CTTACTGCTTTCTTCAGGTA+CGG 0.500237 8_2:-27980559 None:intergenic
AACTGGAGCTTCCGAAATAG+AGG 0.500437 8_2:+27982525 Msa1243020:CDS
GCCATGTATTCTTCAACGGT+TGG 0.503430 8_2:-27981082 None:intergenic
GAAGCAAAGTGGTACTATAG+TGG 0.511242 8_2:+27981052 Msa1243020:CDS
GCAAGAGTTGCTAATGACTA+CGG 0.511511 8_2:+27981238 Msa1243020:CDS
TTCAATCGAAATGGAAGACT+TGG 0.513598 8_2:+27981168 Msa1243020:CDS
ATGTAAGTTCTTCTTCAACT+TGG 0.516743 8_2:-27977453 None:intergenic
CATGGTTATGAGATATCTAC+AGG 0.517518 8_2:+27977509 Msa1243020:CDS
TTGAAGAATACATGGCAAAT+GGG 0.520906 8_2:+27981089 Msa1243020:CDS
TGCTGTCAGGCGAATTATGT+TGG 0.521802 8_2:-27981209 None:intergenic
CTTCCATAATGTAGACATCA+TGG 0.522455 8_2:-27982566 None:intergenic
AGCATATTTGCATGTAGTAT+GGG 0.525197 8_2:-27980462 None:intergenic
GAATATTTGAAACAAAATAG+AGG 0.535112 8_2:+27978364 Msa1243020:CDS
CATGGGTCCAAATTGAAGGT+TGG 0.536902 8_2:-27977093 None:intergenic
TTTCTCGACTCGAGGCTCGA+TGG 0.546070 8_2:+27978443 Msa1243020:CDS
ATTTGCCATGTATTCTTCAA+CGG 0.557754 8_2:-27981086 None:intergenic
GCCTTACATTGAATTGGACG+AGG 0.561397 8_2:-27977013 None:intergenic
GTCATTAGCAACTCTTGCAA+TGG 0.561701 8_2:-27981233 None:intergenic
GTATATTGCACAACACTTCA+GGG 0.561990 8_2:-27982754 None:intergenic
CAAGAGTTGCTAATGACTAC+GGG 0.573530 8_2:+27981239 Msa1243020:CDS
TCTTCCATTTCGATTGAATG+TGG 0.582432 8_2:-27981163 None:intergenic
TCCAACCGTTGAAGAATACA+TGG 0.583771 8_2:+27981081 Msa1243020:CDS
CATATTTGATAGAAGCAAAG+TGG 0.585970 8_2:+27981041 Msa1243020:CDS
TTGGACAATTTCTCGACTCG+AGG 0.586359 8_2:+27978435 Msa1243020:CDS
AAGAACTAAAGTGTGCATCA+AGG 0.590523 8_2:+27978560 Msa1243020:CDS
TAATGACTGAATATAATCAT+GGG 0.597450 8_2:-27977110 None:intergenic
GCACATGCTGTATTTACCCA+TGG 0.601527 8_2:+27981127 Msa1243020:CDS
AGTTTATTGATGTATTGCAA+AGG 0.602279 8_2:+27977360 Msa1243020:CDS
AGATCAACGCAAAGTACTAA+GGG 0.605070 8_2:+27977286 Msa1243020:CDS
TTCAGACTCTTGAGACAACA+TGG 0.605670 8_2:+27977491 Msa1243020:CDS
GAAGAGCTCAAGTTCTTCCA+GGG 0.609664 8_2:-27980298 None:intergenic
GTAGTATGGGAGAGAATCCA+AGG 0.610000 8_2:-27980449 None:intergenic
GGTCGTTATCTCTAGCAACA+TGG 0.611341 8_2:+27976978 Msa1243020:CDS
GTGGCATCGAAAAGTAACCA+TGG 0.621565 8_2:-27981144 None:intergenic
ATGTTGCTAGAGATAACGAC+CGG 0.621606 8_2:-27976976 None:intergenic
TGGCATCGAAAAGTAACCAT+GGG 0.626709 8_2:-27981143 None:intergenic
CATGCAAATATGCTTTCATG+CGG 0.630142 8_2:+27980471 Msa1243020:CDS
GAGTCTGAACTTGAGTGCTG+TGG 0.633446 8_2:-27977477 None:intergenic
CCTTACATTGAATTGGACGA+GGG 0.665160 8_2:-27977012 None:intergenic
GCAAATGGGTGTGTATCCAT+AGG 0.671102 8_2:+27981103 Msa1243020:CDS
GTATGATTTGTATGGCACCC+TGG 0.671543 8_2:+27980281 Msa1243020:CDS
ATCATACACATCATCAACTG+TGG 0.683052 8_2:-27980265 None:intergenic
GACTTATTAGAAGTGACACG+TGG 0.737197 8_2:-27978390 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr8_2:27981307-27981326 Msa1243020:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr8_2:27981308-27981327 Msa1243020:intron 0.0%
!! TATATATATATATATATATA+TGG + chr8_2:27981307-27981326 Msa1243020:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr8_2:27981308-27981327 Msa1243020:intron 0.0%
!! TATATATATATATATATATA+TGG + chr8_2:27981307-27981326 Msa1243020:intron 0.0%
!! GAATCTTATAAATAAATAAA+TGG - chr8_2:27977195-27977214 None:intergenic 10.0%
!! ATTAATTTAATTAACTTACA+CGG - chr8_2:27977248-27977267 None:intergenic 10.0%
!! CTATTAAAAAAAATTAATTG+AGG - chr8_2:27977676-27977695 None:intergenic 10.0%
!! AATATTACATAATATATACA+AGG + chr8_2:27979383-27979402 Msa1243020:intron 10.0%
!! ATATTACATAATATATACAA+GGG + chr8_2:27979384-27979403 Msa1243020:intron 10.0%
!!! TTATCAAATAATTTTTTTGA+AGG + chr8_2:27979837-27979856 Msa1243020:intron 10.0%
!!! TATCAAATAATTTTTTTGAA+GGG + chr8_2:27979838-27979857 Msa1243020:intron 10.0%
!! AAAAAATATCATTATTTAAC+GGG - chr8_2:27980347-27980366 None:intergenic 10.0%
!!! TCTATTTTTAATAAGTTTTT+AGG + chr8_2:27980790-27980809 Msa1243020:intron 10.0%
!! TAAAGAATAATTACTTTATT+AGG + chr8_2:27980936-27980955 Msa1243020:intron 10.0%
!! ATATATATATATATATATGC+AGG + chr8_2:27981739-27981758 Msa1243020:intron 10.0%
!! TAAGTTAATTAAATTAATGC+AGG + chr8_2:27977250-27977269 Msa1243020:intron 15.0%
!!! ACAATTTTTTTTAACTAAAC+TGG + chr8_2:27977635-27977654 Msa1243020:intron 15.0%
!!! AGAACTAAATTTTTTTTGTA+GGG - chr8_2:27977709-27977728 None:intergenic 15.0%
!!! TAGAACTAAATTTTTTTTGT+AGG - chr8_2:27977710-27977729 None:intergenic 15.0%
!! AAGATAAAAGTAATAAAATC+TGG + chr8_2:27977899-27977918 Msa1243020:intron 15.0%
!! CATTAATATATACGAAAAAA+AGG + chr8_2:27978468-27978487 Msa1243020:CDS 15.0%
!! GATTGAAAAACAATTAATAA+TGG + chr8_2:27978956-27978975 Msa1243020:intron 15.0%
!!! ATTTTTACTTATAAATGAGA+CGG - chr8_2:27979095-27979114 None:intergenic 15.0%
!! TTTAAGCACAAAAAATATAA+AGG - chr8_2:27979675-27979694 None:intergenic 15.0%
!! AAGAGAAAATTCAAATAAAA+AGG - chr8_2:27980377-27980396 None:intergenic 15.0%
!!! AAAAGTTTAAAATAGAAGTT+TGG - chr8_2:27980737-27980756 None:intergenic 15.0%
!! TATTAAGCATAATAATGTTA+GGG - chr8_2:27981001-27981020 None:intergenic 15.0%
!! ATATAGAGAAAATTCTAATA+TGG + chr8_2:27982188-27982207 Msa1243020:intron 15.0%
!!! ATAATGCATTTATTTAACTT+TGG - chr8_2:27982499-27982518 None:intergenic 15.0%
!! TAATGACTGAATATAATCAT+GGG - chr8_2:27977113-27977132 None:intergenic 20.0%
!! TTAATGACTGAATATAATCA+TGG - chr8_2:27977114-27977133 None:intergenic 20.0%
!!! ACCATTTTAACAAAGAAATT+AGG + chr8_2:27977396-27977415 Msa1243020:CDS 20.0%
!!! CCATTTTAACAAAGAAATTA+GGG + chr8_2:27977397-27977416 Msa1243020:CDS 20.0%
!! TTCGAAAATTTAAGAGTTTA+AGG - chr8_2:27977770-27977789 None:intergenic 20.0%
!!! AAATTTTCGAACGATTTTTT+TGG + chr8_2:27977779-27977798 Msa1243020:intron 20.0%
!! AAGTAAAGACTTAACTTTAA+AGG + chr8_2:27978104-27978123 Msa1243020:intron 20.0%
!!! TTTAAAGGTCTCAATTTTAT+AGG + chr8_2:27978119-27978138 Msa1243020:intron 20.0%
!!! TTAAAGGTCTCAATTTTATA+GGG + chr8_2:27978120-27978139 Msa1243020:intron 20.0%
!!! GAAGTATGTAATTTTAAGAA+AGG + chr8_2:27978229-27978248 Msa1243020:CDS 20.0%
!!! ATATTCTTTGAGAAAATTTG+TGG - chr8_2:27978350-27978369 None:intergenic 20.0%
!!! GAATATTTGAAACAAAATAG+AGG + chr8_2:27978364-27978383 Msa1243020:CDS 20.0%
!! AATAAAAACCTAATTTGAGA+CGG - chr8_2:27978644-27978663 None:intergenic 20.0%
!! AAATGATTAGCAATGTTAAT+TGG + chr8_2:27978689-27978708 Msa1243020:intron 20.0%
!! AATGATTAGCAATGTTAATT+GGG + chr8_2:27978690-27978709 Msa1243020:intron 20.0%
!!! TTTTTACTTATAAATGAGAC+GGG - chr8_2:27979094-27979113 None:intergenic 20.0%
!! TTGAAAGTAACATTATTGAA+AGG + chr8_2:27979234-27979253 Msa1243020:intron 20.0%
!! TATTTGCTTTCAATTTGTAA+TGG - chr8_2:27979538-27979557 None:intergenic 20.0%
!!! ATCATTATTTTTTGTTCAAG+TGG - chr8_2:27979601-27979620 None:intergenic 20.0%
!!! ACCAAACTAAGATATTTTTA+TGG + chr8_2:27979867-27979886 Msa1243020:intron 20.0%
!! TCCATAAAAATATCTTAGTT+TGG - chr8_2:27979871-27979890 None:intergenic 20.0%
!! CAAATTATTAGTAGAAAGTA+TGG - chr8_2:27980076-27980095 None:intergenic 20.0%
!!! ATTTTTTCTTCATTTTCAGA+TGG + chr8_2:27980100-27980119 Msa1243020:intron 20.0%
!! GAAATTATCAATATTGTGTT+TGG + chr8_2:27980403-27980422 Msa1243020:intron 20.0%
!!! ATTCTCTCTATATATTTTGA+AGG + chr8_2:27980620-27980639 Msa1243020:intron 20.0%
!!! TTCTCTCTATATATTTTGAA+GGG + chr8_2:27980621-27980640 Msa1243020:intron 20.0%
!! CTATTAAGCATAATAATGTT+AGG - chr8_2:27981002-27981021 None:intergenic 20.0%
!! AACATTATTATGCTTAATAG+TGG + chr8_2:27981002-27981021 Msa1243020:intron 20.0%
! GTCATTAAGTAGTGAATATA+AGG + chr8_2:27977126-27977145 Msa1243020:CDS 25.0%
! TAAGTAGTGAATATAAGGTA+CGG + chr8_2:27977131-27977150 Msa1243020:intron 25.0%
! TTAATGCAGGAAGAAATTTA+CGG + chr8_2:27977263-27977282 Msa1243020:intron 25.0%
! AGTTTATTGATGTATTGCAA+AGG + chr8_2:27977360-27977379 Msa1243020:CDS 25.0%
! CCCTAATTTCTTTGTTAAAA+TGG - chr8_2:27977400-27977419 None:intergenic 25.0%
!!! TAGTAGTCTTTGATTGATTT+TGG - chr8_2:27977613-27977632 None:intergenic 25.0%
!!! AAACAAACTTTGTTTTAGCA+GGG - chr8_2:27977741-27977760 None:intergenic 25.0%
!!! TAAACAAACTTTGTTTTAGC+AGG - chr8_2:27977742-27977761 None:intergenic 25.0%
!!! TGAGTGCATCATTTTTTTTA+GGG + chr8_2:27978060-27978079 Msa1243020:intron 25.0%
! GTTTGAAGATGAAACTATAT+TGG + chr8_2:27978306-27978325 Msa1243020:CDS 25.0%
!! AAGTTGTCATTTACATTAAG+TGG + chr8_2:27978590-27978609 Msa1243020:intron 25.0%
!! TTTTACTTATAAATGAGACG+GGG - chr8_2:27979093-27979112 None:intergenic 25.0%
!!! GTGGACATAATTTTTGTTAT+GGG - chr8_2:27979582-27979601 None:intergenic 25.0%
!! AGTGGACATAATTTTTGTTA+TGG - chr8_2:27979583-27979602 None:intergenic 25.0%
!! TCAAAAAACAAAGGACTTTT+GGG - chr8_2:27979995-27980014 None:intergenic 25.0%
! CTTCATTTCTCAAAAAACAA+AGG - chr8_2:27980004-27980023 None:intergenic 25.0%
!!! TTGTTTTTTGAGAAATGAAG+AGG + chr8_2:27980004-27980023 Msa1243020:intron 25.0%
! ATTCTGAATTGTTCAAAATC+TGG - chr8_2:27980216-27980235 None:intergenic 25.0%
!! GATTTTGAACAATTCAGAAT+TGG + chr8_2:27980216-27980235 Msa1243020:CDS 25.0%
! ATAAAAGACACCTTCATAAA+AGG + chr8_2:27981643-27981662 Msa1243020:intron 25.0%
!! TATTTAAAATGAGAGTGAGA+GGG - chr8_2:27981816-27981835 None:intergenic 25.0%
! AAGTAGTTAAATACACCTTA+AGG - chr8_2:27982037-27982056 None:intergenic 25.0%
! TTTCTAAGTTCATTCAATGA+AGG - chr8_2:27982131-27982150 None:intergenic 25.0%
!!! ATGACCAAATAAAAAGTGTT+TGG + chr8_2:27982215-27982234 Msa1243020:intron 25.0%
! GTTTAGTTGTATACTTCAAA+AGG - chr8_2:27982408-27982427 None:intergenic 25.0%
TATGATGCCTTACATTGAAT+TGG - chr8_2:27977022-27977041 None:intergenic 30.0%
ATTGATGTATTGCAAAGGAT+TGG + chr8_2:27977365-27977384 Msa1243020:CDS 30.0%
CAAAGAAATTAGGGACATAT+TGG + chr8_2:27977406-27977425 Msa1243020:CDS 30.0%
ATGTAAGTTCTTCTTCAACT+TGG - chr8_2:27977456-27977475 None:intergenic 30.0%
! CATGTTTAGAACACTATGAA+AGG + chr8_2:27977803-27977822 Msa1243020:intron 30.0%
!!! CTGAGTGCATCATTTTTTTT+AGG + chr8_2:27978059-27978078 Msa1243020:intron 30.0%
ACTTCTAATAAGTCATGCTT+TGG + chr8_2:27978399-27978418 Msa1243020:CDS 30.0%
TTTACTCCAATTCGCTAAAT+TGG + chr8_2:27978507-27978526 Msa1243020:CDS 30.0%
TGAAATCCAATTTAGCGAAT+TGG - chr8_2:27978516-27978535 None:intergenic 30.0%
CATAATATATACAAGGGACA+TGG + chr8_2:27979390-27979409 Msa1243020:intron 30.0%
ATGTTAGAGAAGAGAATAAG+CGG - chr8_2:27979433-27979452 None:intergenic 30.0%
!! GACATAATTTTTGTTATGGG+AGG - chr8_2:27979579-27979598 None:intergenic 30.0%
! CTCAAAAAACAAAGGACTTT+TGG - chr8_2:27979996-27980015 None:intergenic 30.0%
! TTTTCTTCATTTTCAGATGG+TGG + chr8_2:27980103-27980122 Msa1243020:intron 30.0%
GAATTGTTGAGAACTTTGTT+TGG + chr8_2:27980169-27980188 Msa1243020:CDS 30.0%
ATCATCAACTGTGGTAATTA+AGG - chr8_2:27980259-27980278 None:intergenic 30.0%
! GATGATGTGTATGATTTGTA+TGG + chr8_2:27980273-27980292 Msa1243020:CDS 30.0%
AGCATATTTGCATGTAGTAT+GGG - chr8_2:27980465-27980484 None:intergenic 30.0%
AAGCATATTTGCATGTAGTA+TGG - chr8_2:27980466-27980485 None:intergenic 30.0%
!! TATATTTTGAAGGGTTTGTC+TGG + chr8_2:27980630-27980649 Msa1243020:intron 30.0%
CATATTTGATAGAAGCAAAG+TGG + chr8_2:27981041-27981060 Msa1243020:CDS 30.0%
ATTTGCCATGTATTCTTCAA+CGG - chr8_2:27981089-27981108 None:intergenic 30.0%
TTGAAGAATACATGGCAAAT+GGG + chr8_2:27981089-27981108 Msa1243020:CDS 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr8_2:27981365-27981384 Msa1243020:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr8_2:27981365-27981384 Msa1243020:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr8_2:27981608-27981627 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG - chr8_2:27981656-27981675 None:intergenic 30.0%
! CTATTTAAAATGAGAGTGAG+AGG - chr8_2:27981817-27981836 None:intergenic 30.0%
!! GTGACCAAACACTTTTTATT+TGG - chr8_2:27982222-27982241 None:intergenic 30.0%
AACACACACACATAAAAAGA+TGG - chr8_2:27982316-27982335 None:intergenic 30.0%
! GTGTTCAAACACTATTGATT+TGG + chr8_2:27982331-27982350 Msa1243020:intron 30.0%
! ATATACGAGGTATTCTTACA+TGG - chr8_2:27982365-27982384 None:intergenic 30.0%
CATCGTATCATATATATACG+AGG - chr8_2:27982378-27982397 None:intergenic 30.0%
TTAAAGAGTGAAAATGAGAC+AGG + chr8_2:27982466-27982485 Msa1243020:intron 30.0%
AAATGCATTATGAACGAAAC+TGG + chr8_2:27982508-27982527 Msa1243020:CDS 30.0%
!!! CGATTCTGAATTTTAGAATC+TGG - chr8_2:27982706-27982725 None:intergenic 30.0%
ATTGAAGGTTGGAACTTAGA+AGG - chr8_2:27977085-27977104 None:intergenic 35.0%
CTAAGTTCCAACCTTCAATT+TGG + chr8_2:27977086-27977105 Msa1243020:CDS 35.0%
TAATCATGGGTCCAAATTGA+AGG - chr8_2:27977100-27977119 None:intergenic 35.0%
TTCAAGCAATTACTAGTCCT+TGG + chr8_2:27977212-27977231 Msa1243020:intron 35.0%
! TACACGGATTATTACTACCA+AGG - chr8_2:27977232-27977251 None:intergenic 35.0%
! AGATCAACGCAAAGTACTAA+GGG + chr8_2:27977286-27977305 Msa1243020:CDS 35.0%
CATGGTTATGAGATATCTAC+AGG + chr8_2:27977509-27977528 Msa1243020:CDS 35.0%
CTTTGGATCTTCCATTGAAT+TGG + chr8_2:27978416-27978435 Msa1243020:CDS 35.0%
CGAGAAATTGTCCAATTCAA+TGG - chr8_2:27978430-27978449 None:intergenic 35.0%
!! ATGCACACTTTAGTTCTTCT+AGG - chr8_2:27978558-27978577 None:intergenic 35.0%
AAGAACTAAAGTGTGCATCA+AGG + chr8_2:27978560-27978579 Msa1243020:CDS 35.0%
GAAATGTTAACTAGTGCTCT+CGG + chr8_2:27978712-27978731 Msa1243020:intron 35.0%
ATCAACATGAGTCTCGTTAA+CGG - chr8_2:27978866-27978885 None:intergenic 35.0%
ACGTTGTATGCTATTGTTAG+AGG + chr8_2:27979003-27979022 Msa1243020:intron 35.0%
CGTTGTATGCTATTGTTAGA+GGG + chr8_2:27979004-27979023 Msa1243020:intron 35.0%
AGATGACACCTAATTTGAGA+TGG + chr8_2:27979058-27979077 Msa1243020:intron 35.0%
TGTGAGTTTAGATCAGTTGA+TGG + chr8_2:27979359-27979378 Msa1243020:intron 35.0%
TTTCTTATCTTGTGCCCTAA+GGG + chr8_2:27979940-27979959 Msa1243020:intron 35.0%
!! CTTTGACTTTTGTTCCAACT+GGG - chr8_2:27980037-27980056 None:intergenic 35.0%
!! TCTTTGACTTTTGTTCCAAC+TGG - chr8_2:27980038-27980057 None:intergenic 35.0%
GTCAAAGAATTGAGAGAGAT+TGG + chr8_2:27980050-27980069 Msa1243020:intron 35.0%
TAGAAAAACTGAGCTTTGCT+AGG + chr8_2:27980142-27980161 Msa1243020:CDS 35.0%
AGAAAAACTGAGCTTTGCTA+GGG + chr8_2:27980143-27980162 Msa1243020:CDS 35.0%
! GAGAACTTTGTTTGGAATGT+TGG + chr8_2:27980177-27980196 Msa1243020:CDS 35.0%
ATCATACACATCATCAACTG+TGG - chr8_2:27980268-27980287 None:intergenic 35.0%
TCTTCACAGAAGCTATTGAT+AGG + chr8_2:27980316-27980335 Msa1243020:CDS 35.0%
! TTGTGTTTGGTGATTCTAGA+TGG + chr8_2:27980416-27980435 Msa1243020:intron 35.0%
! TGTGTTTGGTGATTCTAGAT+GGG + chr8_2:27980417-27980436 Msa1243020:intron 35.0%
CATGCAAATATGCTTTCATG+CGG + chr8_2:27980471-27980490 Msa1243020:CDS 35.0%
AAATGTTAACAAGTGCCCTT+AGG + chr8_2:27980830-27980849 Msa1243020:intron 35.0%
AATGTTAACAAGTGCCCTTA+GGG + chr8_2:27980831-27980850 Msa1243020:intron 35.0%
GTTACTAAACAATGCCCTAA+GGG - chr8_2:27980848-27980867 None:intergenic 35.0%
AGTTACTAAACAATGCCCTA+AGG - chr8_2:27980849-27980868 None:intergenic 35.0%
AATCCTTAAAGAGTTCCCTT+AGG + chr8_2:27980959-27980978 Msa1243020:intron 35.0%
ATCCTTAAAGAGTTCCCTTA+GGG + chr8_2:27980960-27980979 Msa1243020:intron 35.0%
GTTGAAGAATACATGGCAAA+TGG + chr8_2:27981088-27981107 Msa1243020:CDS 35.0%
TCTTCCATTTCGATTGAATG+TGG - chr8_2:27981166-27981185 None:intergenic 35.0%
TTCAATCGAAATGGAAGACT+TGG + chr8_2:27981168-27981187 Msa1243020:CDS 35.0%
ACACACACACAATGTTAAGT+TGG - chr8_2:27981282-27981301 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - chr8_2:27981353-27981372 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr8_2:27981354-27981373 None:intergenic 35.0%
AAAGTGAAAATCACGCCTTA+AGG - chr8_2:27981383-27981402 None:intergenic 35.0%
ACACCTTCCTAAAAGTAAGT+TGG + chr8_2:27981425-27981444 Msa1243020:intron 35.0%
!! TGTCCAACTTACTTTTAGGA+AGG - chr8_2:27981431-27981450 None:intergenic 35.0%
!! GCAATGTCCAACTTACTTTT+AGG - chr8_2:27981435-27981454 None:intergenic 35.0%
ACACACACACAATGTTAAGT+TGG - chr8_2:27981282-27981301 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - chr8_2:27981353-27981372 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr8_2:27981354-27981373 None:intergenic 35.0%
! AACCATTCGATTTGATCCAA+GGG + chr8_2:27981779-27981798 Msa1243020:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr8_2:27981992-27982011 Msa1243020:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr8_2:27981998-27982017 None:intergenic 35.0%
! TTTTAGCAAGCTACACCTTA+AGG + chr8_2:27982019-27982038 Msa1243020:intron 35.0%
ATAATCACGAGCCTCTATTT+CGG - chr8_2:27982539-27982558 None:intergenic 35.0%
AGTCCATGATGTCTACATTA+TGG + chr8_2:27982563-27982582 Msa1243020:CDS 35.0%
CTTCCATAATGTAGACATCA+TGG - chr8_2:27982569-27982588 None:intergenic 35.0%
TGTATGTTCATGTACCAGTA+TGG + chr8_2:27982664-27982683 Msa1243020:CDS 35.0%
!! GTTTTGATCAAGGCAAATGG+GGG - chr8_2:27976941-27976960 None:intergenic 40.0%
!! CGTTTTGATCAAGGCAAATG+GGG - chr8_2:27976942-27976961 None:intergenic 40.0%
!! GCGTTTTGATCAAGGCAAAT+GGG - chr8_2:27976943-27976962 None:intergenic 40.0%
!! AGCGTTTTGATCAAGGCAAA+TGG - chr8_2:27976944-27976963 None:intergenic 40.0%
!!! GGGAAAAAGCGTTTTGATCA+AGG - chr8_2:27976951-27976970 None:intergenic 40.0%
!!! AAACGCTTTTTCCCAACAAC+CGG + chr8_2:27976957-27976976 Msa1243020:CDS 40.0%
ATGTTGCTAGAGATAACGAC+CGG - chr8_2:27976979-27976998 None:intergenic 40.0%
CCTTACATTGAATTGGACGA+GGG - chr8_2:27977015-27977034 None:intergenic 40.0%
! GAGATCAACGCAAAGTACTA+AGG + chr8_2:27977285-27977304 Msa1243020:CDS 40.0%
TTCAGACTCTTGAGACAACA+TGG + chr8_2:27977491-27977510 Msa1243020:CDS 40.0%
GGACAGTTTGTAGATGTTCA+TGG + chr8_2:27978250-27978269 Msa1243020:CDS 40.0%
GACTTATTAGAAGTGACACG+TGG - chr8_2:27978393-27978412 None:intergenic 40.0%
GACGGAGACAGTATCAATTA+AGG - chr8_2:27978626-27978645 None:intergenic 40.0%
TACTGTCTCCGTCTCAAATT+AGG + chr8_2:27978633-27978652 Msa1243020:intron 40.0%
! ACACCTAATTTGAGATGGAG+AGG + chr8_2:27979063-27979082 Msa1243020:intron 40.0%
GTACCTCTCCATCTCAAATT+AGG - chr8_2:27979069-27979088 None:intergenic 40.0%
GTTTCTTATCTTGTGCCCTA+AGG + chr8_2:27979939-27979958 Msa1243020:intron 40.0%
CTCTCATAATTGTGCCCTTA+GGG - chr8_2:27979957-27979976 None:intergenic 40.0%
TCTCTCATAATTGTGCCCTT+AGG - chr8_2:27979958-27979977 None:intergenic 40.0%
TAGATGGGATTTGAATGCCT+TGG + chr8_2:27980432-27980451 Msa1243020:intron 40.0%
CTTACTGCTTTCTTCAGGTA+CGG - chr8_2:27980562-27980581 None:intergenic 40.0%
AGTTGCTTACTGCTTTCTTC+AGG - chr8_2:27980567-27980586 None:intergenic 40.0%
ATTGTTAACGAGTGCCCTAA+GGG - chr8_2:27980977-27980996 None:intergenic 40.0%
TATTGTTAACGAGTGCCCTA+AGG - chr8_2:27980978-27980997 None:intergenic 40.0%
GAAGCAAAGTGGTACTATAG+TGG + chr8_2:27981052-27981071 Msa1243020:CDS 40.0%
TCCAACCGTTGAAGAATACA+TGG + chr8_2:27981081-27981100 Msa1243020:CDS 40.0%
AAATACAGCATGTGCACCTA+TGG - chr8_2:27981122-27981141 None:intergenic 40.0%
! TGGCATCGAAAAGTAACCAT+GGG - chr8_2:27981146-27981165 None:intergenic 40.0%
GATGCCACATTCAATCGAAA+TGG + chr8_2:27981159-27981178 Msa1243020:CDS 40.0%
! ATGGAAGACTTGGTTCGTTT+AGG + chr8_2:27981178-27981197 Msa1243020:CDS 40.0%
GTCATTAGCAACTCTTGCAA+TGG - chr8_2:27981236-27981255 None:intergenic 40.0%
GCAAGAGTTGCTAATGACTA+CGG + chr8_2:27981238-27981257 Msa1243020:CDS 40.0%
CAAGAGTTGCTAATGACTAC+GGG + chr8_2:27981239-27981258 Msa1243020:CDS 40.0%
TTATGTTACAAGCCACCCTT+TGG + chr8_2:27981335-27981354 Msa1243020:intron 40.0%
TTATGTTACAAGCCACCCTT+TGG + chr8_2:27981335-27981354 Msa1243020:intron 40.0%
! CAACCATTCGATTTGATCCA+AGG + chr8_2:27981778-27981797 Msa1243020:intron 40.0%
! TAGAGGGTGTATCAAATGAG+AGG - chr8_2:27981841-27981860 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr8_2:27981991-27982010 Msa1243020:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr8_2:27981999-27982018 None:intergenic 40.0%
TTGCTCATATTAGTGACGAG+AGG + chr8_2:27982159-27982178 Msa1243020:intron 40.0%
TGCTCATATTAGTGACGAGA+GGG + chr8_2:27982160-27982179 Msa1243020:intron 40.0%
TGCTATAAGCATCTCCATAC+TGG - chr8_2:27982681-27982700 None:intergenic 40.0%
AATGGGGGAGAAGCAACTAT+GGG - chr8_2:27976926-27976945 None:intergenic 45.0%
AAATGGGGGAGAAGCAACTA+TGG - chr8_2:27976927-27976946 None:intergenic 45.0%
AGAGATAACGACCGGTTGTT+GGG - chr8_2:27976971-27976990 None:intergenic 45.0%
TAGAGATAACGACCGGTTGT+TGG - chr8_2:27976972-27976991 None:intergenic 45.0%
GGTCGTTATCTCTAGCAACA+TGG + chr8_2:27976978-27976997 Msa1243020:CDS 45.0%
CCCTCGTCCAATTCAATGTA+AGG + chr8_2:27977012-27977031 Msa1243020:CDS 45.0%
GCCTTACATTGAATTGGACG+AGG - chr8_2:27977016-27977035 None:intergenic 45.0%
CATGGGTCCAAATTGAAGGT+TGG - chr8_2:27977096-27977115 None:intergenic 45.0%
! TTGGACAATTTCTCGACTCG+AGG + chr8_2:27978435-27978454 Msa1243020:CDS 45.0%
!! AATGGTTAAAGAGTGTCCCG+AGG + chr8_2:27978837-27978856 Msa1243020:intron 45.0%
!! ATGGTTAAAGAGTGTCCCGA+GGG + chr8_2:27978838-27978857 Msa1243020:intron 45.0%
! GTATGATTTGTATGGCACCC+TGG + chr8_2:27980281-27980300 Msa1243020:CDS 45.0%
GAAGAGCTCAAGTTCTTCCA+GGG - chr8_2:27980301-27980320 None:intergenic 45.0%
TGAAGAGCTCAAGTTCTTCC+AGG - chr8_2:27980302-27980321 None:intergenic 45.0%
GTAGTATGGGAGAGAATCCA+AGG - chr8_2:27980452-27980471 None:intergenic 45.0%
TGCCCTAAGGGAACTCTTTA+AGG - chr8_2:27980965-27980984 None:intergenic 45.0%
GCCATGTATTCTTCAACGGT+TGG - chr8_2:27981085-27981104 None:intergenic 45.0%
GCAAATGGGTGTGTATCCAT+AGG + chr8_2:27981103-27981122 Msa1243020:CDS 45.0%
GCACATGCTGTATTTACCCA+TGG + chr8_2:27981127-27981146 Msa1243020:CDS 45.0%
! GTGGCATCGAAAAGTAACCA+TGG - chr8_2:27981147-27981166 None:intergenic 45.0%
TGCTGTCAGGCGAATTATGT+TGG - chr8_2:27981212-27981231 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr8_2:27981350-27981369 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr8_2:27981350-27981369 None:intergenic 45.0%
AGCCCTTGGATCAAATCGAA+TGG - chr8_2:27981784-27981803 None:intergenic 45.0%
GAGGGTTAAATTACAGCCCT+TGG - chr8_2:27981798-27981817 None:intergenic 45.0%
AACTGGAGCTTCCGAAATAG+AGG + chr8_2:27982525-27982544 Msa1243020:CDS 45.0%
!! AAATAAAAAAATAAAAAAAC+TGG + chr8_2:27977572-27977591 Msa1243020:intron 5.0%
!!! TAAATATGTATTTTTTTATA+GGG - chr8_2:27978163-27978182 None:intergenic 5.0%
!!! ATAAATATGTATTTTTTTAT+AGG - chr8_2:27978164-27978183 None:intergenic 5.0%
!!! TTTTATTTTTTAATTTTACA+CGG + chr8_2:27978657-27978676 Msa1243020:intron 5.0%
!! TTATAAAAAATTGTAATTTA+AGG - chr8_2:27978748-27978767 None:intergenic 5.0%
!! AATAATTACTTAATTTAAAA+TGG + chr8_2:27978819-27978838 Msa1243020:intron 5.0%
!!! ACTTTAAAATATTTTTAATA+AGG + chr8_2:27979632-27979651 Msa1243020:intron 5.0%
!! TTAAAATTTCAAAAAAAATT+TGG + chr8_2:27979690-27979709 Msa1243020:intron 5.0%
!! TAAAATTTCAAAAAAAATTT+GGG + chr8_2:27979691-27979710 Msa1243020:intron 5.0%
!! TAAAAAATATCATTATTTAA+CGG - chr8_2:27980348-27980367 None:intergenic 5.0%
!! TATATATATATATATATACA+TGG - chr8_2:27981305-27981324 None:intergenic 5.0%
!! TATATATATATATATATAGA+GGG - chr8_2:27981476-27981495 None:intergenic 5.0%
!! ATATATATATATATATATAG+AGG - chr8_2:27981477-27981496 None:intergenic 5.0%
!!! ATATTTTTTTAATTATAAAG+AGG + chr8_2:27982256-27982275 Msa1243020:intron 5.0%
ATGGGGGAGAAGCAACTATG+GGG - chr8_2:27976925-27976944 None:intergenic 50.0%
! GAGTCTGAACTTGAGTGCTG+TGG - chr8_2:27977480-27977499 None:intergenic 50.0%
GAAGAGGATCTTGACCCAGT+TGG + chr8_2:27980020-27980039 Msa1243020:intron 50.0%
CTCTTGCAATGGTTGCTGTC+AGG - chr8_2:27981225-27981244 None:intergenic 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr8_2:27981338-27981357 Msa1243020:intron 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr8_2:27981338-27981357 Msa1243020:intron 50.0%
! TTTCTCGACTCGAGGCTCGA+TGG + chr8_2:27978443-27978462 Msa1243020:CDS 55.0%
AGTCTCGTTAACGGTGCCCT+CGG - chr8_2:27978857-27978876 None:intergenic 55.0%
GTCTCGTTAACGGTGCCCTC+GGG - chr8_2:27978856-27978875 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 27976914 27982769 27976914 ID=Msa1243020;Name=Msa1243020
chr8_2 mRNA 27976914 27982769 27976914 ID=Msa1243020-mRNA-1;Parent=Msa1243020;Name=Msa1243020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.28|1|1|1|7|10|588
chr8_2 exon 27976914 27977147 27976914 ID=Msa1243020-mRNA-1:exon:9801;Parent=Msa1243020-mRNA-1
chr8_2 exon 27977272 27977530 27977272 ID=Msa1243020-mRNA-1:exon:9802;Parent=Msa1243020-mRNA-1
chr8_2 exon 27978206 27978581 27978206 ID=Msa1243020-mRNA-1:exon:9803;Parent=Msa1243020-mRNA-1
chr8_2 exon 27980119 27980337 27980119 ID=Msa1243020-mRNA-1:exon:9804;Parent=Msa1243020-mRNA-1
chr8_2 exon 27980435 27980576 27980435 ID=Msa1243020-mRNA-1:exon:9805;Parent=Msa1243020-mRNA-1
chr8_2 exon 27981022 27981270 27981022 ID=Msa1243020-mRNA-1:exon:9806;Parent=Msa1243020-mRNA-1
chr8_2 exon 27982472 27982769 27982472 ID=Msa1243020-mRNA-1:exon:9807;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27976914 27977147 27976914 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27977272 27977530 27977272 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27978206 27978581 27978206 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27980119 27980337 27980119 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27980435 27980576 27980435 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27981022 27981270 27981022 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 CDS 27982472 27982759 27982472 ID=Msa1243020-mRNA-1:cds;Parent=Msa1243020-mRNA-1
chr8_2 three_prime_UTR 27982760 27982769 27982760 ID=Msa1243020-mRNA-1:three_prime_utr;Parent=Msa1243020-mRNA-1
Gene Sequence

>Msa1243020

ATGGCTTTCCCCATAGTTGCTTCTCCCCCATTTGCCTTGATCAAAACGCTTTTTCCCAACAACCGGTCGTTATCTCTAGCAACATGGAACTTCAATTTCCCTCGTCCAATTCAATGTAAGGCATCATATAAAGTTTCATATGATCAAAATCAAACAATTTCTCGTCGACCTTCTAAGTTCCAACCTTCAATTTGGACCCATGATTATATTCAGTCATTAAGTAGTGAATATAAGGAAGAAATTTACGGAGATCAACGCAAAGTACTAAGGGAAAAAGTAAGAATCATGTTGTGCAAAATAGAAAACGAGCTTGATCAACTTGAGTTTATTGATGTATTGCAAAGGATTGGAGTGTCTTACCATTTTAACAAAGAAATTAGGGACATATTGGACAACATATACAACAAACAAACATCCAAGTTGAAGAAGAACTTACATGCCACAGCACTCAAGTTCAGACTCTTGAGACAACATGGTTATGAGATATCTACAGATTGTTTTGTTTGCTTTCAAAATGAAGTATGTAATTTTAAGAAAGGACAGTTTGTAGATGTTCATGGAATGTTGTCAATGTATGAAGCTTCTTTTCATTCGTTTGAAGATGAAACTATATTGGATGAAGCAAGAGATTTCACCACAAATTTTCTCAAAGAATATTTGAAACAAAATAGAGGCAACCACGTGTCACTTCTAATAAGTCATGCTTTGGATCTTCCATTGAATTGGACAATTTCTCGACTCGAGGCTCGATGGTTCATTAATATATACGAAAAAAAGGAAAATAAGAATAATGTTTTACTCCAATTCGCTAAATTGGATTTCAACATTCTTCAGAACAACTACCTAGAAGAACTAAAGTGTGCATCAAGATGGTGGAAAGAAACTGCAATCGTAGAAAAACTGAGCTTTGCTAGGGATAGAATTGTTGAGAACTTTGTTTGGAATGTTGGAGCAAATTTCAAGCCAGATTTTGAACAATTCAGAATTGGTATGACAAAGATCAATGCCTTAATTACCACAGTTGATGATGTGTATGATTTGTATGGCACCCTGGAAGAACTTGAGCTCTTCACAGAAGCTATTGATAGATGGGATTTGAATGCCTTGGATTCTCTCCCATACTACATGCAAATATGCTTTCATGCGGTTTACAACTTCGTGAACGAAATTTCTTTTGAAAGCTTGAAAAAGAATGAGAAGTATATCACTACTCCGTACCTGAAGAAAGCATGGACAGATTTATGTAAAGCATATTTGATAGAAGCAAAGTGGTACTATAGTGGATATACTCCAACCGTTGAAGAATACATGGCAAATGGGTGTGTATCCATAGGTGCACATGCTGTATTTACCCATGGTTACTTTTCGATGCCACATTCAATCGAAATGGAAGACTTGGTTCGTTTAGGAGAAGACTCCAACATAATTCGCCTGACAGCAACCATTGCAAGAGTTGCTAATGACTACGGGTCGTATAAAAGTGAAAATGAGACAGGTGATACTCCAAAGTTAAATAAATGCATTATGAACGAAACTGGAGCTTCCGAAATAGAGGCTCGTGATTATATGAAGTCCATGATGTCTACATTATGGAAGAAGATGAATAAAGAAGCTCAAACTTCATCTTTCTCTCAAAATTTCATAGATACAAATATGAACGCATTTAGAATATGTATGTTCATGTACCAGTATGGAGATGCTTATAGCATTCCAGATTCTAAAATTCAGAATCGCATTATGTCATTAGTTTTTGAACCGATTCCCTGA
Protein sequence

>Msa1243020

MAFPIVASPPFALIKTLFPNNRSLSLATWNFNFPRPIQCKASYKVSYDQNQTISRRPSKFQPSIWTHDYIQSLSSEYKEEIYGDQRKVLREKVRIMLCKIENELDQLEFIDVLQRIGVSYHFNKEIRDILDNIYNKQTSKLKKNLHATALKFRLLRQHGYEISTDCFVCFQNEVCNFKKGQFVDVHGMLSMYEASFHSFEDETILDEARDFTTNFLKEYLKQNRGNHVSLLISHALDLPLNWTISRLEARWFINIYEKKENKNNVLLQFAKLDFNILQNNYLEELKCASRWWKETAIVEKLSFARDRIVENFVWNVGANFKPDFEQFRIGMTKINALITTVDDVYDLYGTLEELELFTEAIDRWDLNALDSLPYYMQICFHAVYNFVNEISFESLKKNEKYITTPYLKKAWTDLCKAYLIEAKWYYSGYTPTVEEYMANGCVSIGAHAVFTHGYFSMPHSIEMEDLVRLGEDSNIIRLTATIARVANDYGSYKSENETGDTPKLNKCIMNETGASEIEARDYMKSMMSTLWKKMNKEAQTSSFSQNFIDTNMNAFRICMFMYQYGDAYSIPDSKIQNRIMSLVFEPIP*