Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324440 | sp|Q5NBT9|TPR1_ORYSJ | 47.414 | 232 | 89 | 6 | 33 | 236 | 228 | 454 | 2.92e-52 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324440 | A0A396J9K1 | 93.636 | 220 | 14 | 0 | 25 | 244 | 185 | 404 | 5.88e-116 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541380 | Msa1324440 | 0.846012 | 2.836213e-59 | -8.615850e-47 |
| Msa0602160 | Msa1324440 | 0.913944 | 3.417191e-84 | -8.615850e-47 |
| Msa0932830 | Msa1324440 | -0.807548 | 4.789101e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324440 | MtrunA17_Chr2g0295351 | 93.636 | 220 | 14 | 0 | 25 | 244 | 185 | 404 | 1.13e-119 | 363 |
| Msa1324440 | MtrunA17_Chr2g0295281 | 74.545 | 165 | 32 | 2 | 85 | 239 | 58 | 222 | 3.69e-79 | 239 |
| Msa1324440 | MtrunA17_Chr2g0295251 | 64.596 | 161 | 55 | 1 | 84 | 244 | 52 | 210 | 1.59e-65 | 217 |
| Msa1324440 | MtrunA17_Chr4g0067791 | 46.442 | 267 | 97 | 4 | 16 | 237 | 197 | 462 | 2.95e-62 | 210 |
| Msa1324440 | MtrunA17_Chr2g0310461 | 61.290 | 155 | 43 | 2 | 90 | 244 | 67 | 204 | 3.02e-58 | 189 |
| Msa1324440 | MtrunA17_Chr1g0192431 | 41.573 | 267 | 110 | 5 | 16 | 237 | 197 | 462 | 1.82e-54 | 188 |
| Msa1324440 | MtrunA17_Chr7g0271991 | 41.791 | 268 | 107 | 6 | 16 | 236 | 197 | 462 | 5.18e-51 | 178 |
| Msa1324440 | MtrunA17_Chr4g0003011 | 48.438 | 128 | 66 | 0 | 109 | 236 | 345 | 472 | 1.07e-38 | 142 |
| Msa1324440 | MtrunA17_Chr2g0333311 | 46.154 | 130 | 70 | 0 | 107 | 236 | 343 | 472 | 3.48e-38 | 141 |
| Msa1324440 | MtrunA17_Chr4g0064101 | 45.038 | 131 | 72 | 0 | 107 | 237 | 343 | 473 | 4.68e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324440 | AT5G27030.1 | 56.494 | 154 | 64 | 1 | 83 | 236 | 311 | 461 | 3.68e-49 | 173 |
| Msa1324440 | AT3G16830.1 | 40.892 | 269 | 108 | 7 | 16 | 236 | 197 | 462 | 3.37e-46 | 164 |
| Msa1324440 | AT5G27030.2 | 48.333 | 180 | 64 | 2 | 83 | 236 | 311 | 487 | 5.05e-44 | 158 |
| Msa1324440 | AT1G80490.3 | 47.692 | 130 | 68 | 0 | 107 | 236 | 342 | 471 | 6.01e-39 | 144 |
| Msa1324440 | AT1G80490.2 | 47.692 | 130 | 68 | 0 | 107 | 236 | 342 | 471 | 6.01e-39 | 144 |
| Msa1324440 | AT1G80490.1 | 47.692 | 130 | 68 | 0 | 107 | 236 | 341 | 470 | 6.31e-39 | 144 |
| Msa1324440 | AT1G15750.3 | 42.857 | 161 | 86 | 2 | 82 | 236 | 311 | 471 | 6.50e-39 | 144 |
| Msa1324440 | AT1G15750.1 | 42.857 | 161 | 86 | 2 | 82 | 236 | 311 | 471 | 6.50e-39 | 144 |
| Msa1324440 | AT1G15750.2 | 42.857 | 161 | 86 | 2 | 82 | 236 | 311 | 471 | 6.50e-39 | 144 |
| Msa1324440 | AT1G15750.4 | 42.857 | 161 | 86 | 2 | 82 | 236 | 311 | 471 | 6.50e-39 | 144 |
| Msa1324440 | AT3G15880.3 | 34.177 | 237 | 128 | 1 | 28 | 236 | 237 | 473 | 9.27e-39 | 143 |
| Msa1324440 | AT3G15880.1 | 34.177 | 237 | 128 | 1 | 28 | 236 | 237 | 473 | 1.05e-38 | 143 |
| Msa1324440 | AT3G15880.4 | 34.177 | 237 | 128 | 1 | 28 | 236 | 237 | 473 | 1.05e-38 | 143 |
| Msa1324440 | AT3G15880.2 | 34.177 | 237 | 128 | 1 | 28 | 236 | 237 | 473 | 1.16e-38 | 143 |
Find 90 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTCGGTCAAATTTC+AGG | 0.181186 | 8_4:+34475697 | Msa1324440:CDS |
| AGAGCATAGTTGTTCATATT+TGG | 0.190625 | 8_4:+34477872 | Msa1324440:three_prime_UTR |
| CATCAAGAGCAAAGTTGTTT+TGG | 0.224965 | 8_4:-34478016 | Msa1324430:intron |
| TTTGAAACTTCTGTAGTTTA+GGG | 0.243309 | 8_4:+34478099 | Msa1324440:three_prime_UTR |
| TAATATATGCTAATATTTAA+TGG | 0.246631 | 8_4:+34477966 | Msa1324440:three_prime_UTR |
| AATGCTCTTGTAGGCCATTA+TGG | 0.247263 | 8_4:-34476058 | Msa1324430:intron |
| TTACATGTGATTATGTCTTT+TGG | 0.264580 | 8_4:+34477938 | Msa1324440:three_prime_UTR |
| TATCAAAGCCTTTCAAAATA+TGG | 0.266931 | 8_4:+34475666 | Msa1324440:CDS |
| GAAACAGTTGGTAGTGAAAA+TGG | 0.267992 | 8_4:+34475602 | Msa1324440:intron |
| TGGAGATGATAAGTTAATTA+AGG | 0.291102 | 8_4:+34476249 | Msa1324440:three_prime_UTR |
| AAGGAAGGATCCATATTCTA+TGG | 0.291219 | 8_4:+34474952 | Msa1324440:CDS |
| GACATCTGCATTAATATTAA+AGG | 0.293442 | 8_4:+34474933 | Msa1324440:CDS |
| CTGAAATTTGACCGAACAAT+TGG | 0.301187 | 8_4:-34475696 | Msa1324430:intron |
| AGGATCAACTGTAACAAATA+TGG | 0.308984 | 8_4:+34475464 | Msa1324440:CDS |
| AATTGAAATCCCATAGAATA+TGG | 0.331847 | 8_4:-34474962 | Msa1324430:intron |
| GGTGAGGTTCCGGTGTGTTT+TGG | 0.360724 | 8_4:+34477893 | Msa1324440:three_prime_UTR |
| ATAGCATGACTGCAGTTATA+AGG | 0.361544 | 8_4:+34474911 | None:intergenic |
| GTTCATATTTGGTGAGGTTC+CGG | 0.366406 | 8_4:+34477883 | Msa1324440:three_prime_UTR |
| TCAATTCATTCTATCCTTGC+TGG | 0.376168 | 8_4:+34475498 | Msa1324440:CDS |
| ATACCTCCAAATGCTCTTGT+AGG | 0.377214 | 8_4:-34476067 | Msa1324430:intron |
| ATTTCAATTTCACCTAGAAA+TGG | 0.389485 | 8_4:+34474976 | Msa1324440:CDS |
| ATGGAATATTTCCAATTGTT+CGG | 0.393173 | 8_4:+34475685 | Msa1324440:CDS |
| TAATGGCCTACAAGAGCATT+TGG | 0.393395 | 8_4:+34476061 | Msa1324440:CDS |
| AAATGGAGAAATTTCACTTT+GGG | 0.400386 | 8_4:+34475619 | Msa1324440:CDS |
| GTAGGCCATTATGGACTTGA+TGG | 0.402975 | 8_4:-34476049 | Msa1324430:intron |
| GCAGCAGGGACTGGTGGAAA+TGG | 0.437312 | 8_4:-34475157 | Msa1324430:intron |
| GCCCCATGATACACGATTGA+TGG | 0.440582 | 8_4:-34475903 | Msa1324430:intron |
| TTTGCTCTTGATGCTTAATC+CGG | 0.440596 | 8_4:+34478026 | Msa1324440:three_prime_UTR |
| CTCGCAGCTTCCTCATTGCC+CGG | 0.447826 | 8_4:+34475253 | Msa1324440:CDS |
| TTCAGCAGGAAGCGGAGCTA+AGG | 0.451942 | 8_4:-34475013 | Msa1324430:intron |
| TTACCAATAAAACACGCATC+CGG | 0.452573 | 8_4:-34475926 | Msa1324430:intron |
| ACAATACTAGAATTAATAAT+CGG | 0.459018 | 8_4:-34478152 | Msa1324430:intron |
| CAGTTCAGGCCAACCAGGTC+CGG | 0.460674 | 8_4:-34478045 | Msa1324430:intron |
| TATACCCATCAAGTCCATAA+TGG | 0.460910 | 8_4:+34476044 | Msa1324440:CDS |
| GCACTAGGAGCAGCAGGGAC+TGG | 0.470970 | 8_4:-34475166 | Msa1324430:intron |
| CTCGGTTCTGCACGTGCTAG+TGG | 0.473807 | 8_4:-34477839 | Msa1324430:intron |
| GCAAGGATAGAATGAATTGA+TGG | 0.478088 | 8_4:-34475495 | Msa1324430:intron |
| AAAATGGAGAAATTTCACTT+TGG | 0.479657 | 8_4:+34475618 | Msa1324440:CDS |
| TATCCATCAATCGTGTATCA+TGG | 0.481822 | 8_4:+34475900 | Msa1324440:CDS |
| TTCAACAGATTGTGAAGGAC+CGG | 0.486254 | 8_4:-34475272 | Msa1324430:intron |
| CTTGATGCTTAATCCGGACC+TGG | 0.488222 | 8_4:+34478032 | Msa1324440:three_prime_UTR |
| ATCCATCAATCGTGTATCAT+GGG | 0.491316 | 8_4:+34475901 | Msa1324440:CDS |
| TAATGTTGTGGCAGCATGGA+TGG | 0.493600 | 8_4:+34475189 | Msa1324440:CDS |
| ATTGTTTGCAAGTTACATCA+AGG | 0.496676 | 8_4:+34475444 | Msa1324440:CDS |
| CACAAGTTACAACGCATAGC+TGG | 0.501837 | 8_4:-34476228 | Msa1324430:intron |
| ACATTAGCACTAGGAGCAGC+AGG | 0.501991 | 8_4:-34475172 | Msa1324430:intron |
| GGCGTGCAATGTCCATTTCT+AGG | 0.509480 | 8_4:-34474988 | Msa1324430:intron |
| TGATGGTGGTGTTAATGACT+TGG | 0.513959 | 8_4:+34476187 | Msa1324440:CDS |
| TCATCAAACAACCGAGGCGC+TGG | 0.518820 | 8_4:-34475408 | Msa1324430:intron |
| CAATCGTGTATCATGGGGCC+CGG | 0.519598 | 8_4:+34475907 | Msa1324440:CDS |
| AACTTGCAAACAATAGTTGT+AGG | 0.521125 | 8_4:-34475435 | Msa1324430:intron |
| AGGAAGGATCCATATTCTAT+GGG | 0.522964 | 8_4:+34474953 | Msa1324440:CDS |
| ATGCTTAATCCGGACCTGGT+TGG | 0.524884 | 8_4:+34478036 | Msa1324440:three_prime_UTR |
| GTTCATACTGCAATTTCAGC+AGG | 0.526147 | 8_4:-34475027 | Msa1324430:intron |
| AAATTTCACTTTGGGAAGCA+AGG | 0.530007 | 8_4:+34475627 | Msa1324440:CDS |
| ATAATCTACTCAAACAGTTC+AGG | 0.531722 | 8_4:-34478059 | Msa1324430:intron |
| TACCAATAAAACACGCATCC+GGG | 0.533719 | 8_4:-34475925 | Msa1324430:intron |
| TAGGCCATTATGGACTTGAT+GGG | 0.547198 | 8_4:-34476048 | Msa1324430:intron |
| TGTTTGAGTAGATTATGTAC+AGG | 0.548216 | 8_4:+34478066 | Msa1324440:three_prime_UTR |
| AGGCGCTGGTTGAGATGTAA+AGG | 0.556676 | 8_4:-34475394 | Msa1324430:intron |
| CAGCTATGCGTTGTAACTTG+TGG | 0.559744 | 8_4:+34476229 | Msa1324440:exon |
| TGCTCCTAGTGCTAATGTTG+TGG | 0.560593 | 8_4:+34475177 | Msa1324440:CDS |
| AATGTTGTGGCAGCATGGAT+GGG | 0.567789 | 8_4:+34475190 | Msa1324440:CDS |
| GTGGCAGCATGGATGGGGAA+TGG | 0.572290 | 8_4:+34475196 | Msa1324440:CDS |
| TCCTTCACAATCTGTTGAAG+TGG | 0.572914 | 8_4:+34475276 | Msa1324440:CDS |
| CTTTGAATTTGAAAGAATCG+TGG | 0.574718 | 8_4:+34475876 | Msa1324440:CDS |
| TCAAACAGTTCAGGCCAACC+AGG | 0.576128 | 8_4:-34478050 | Msa1324430:intron |
| CTAGGAGCAGCAGGGACTGG+TGG | 0.576994 | 8_4:-34475163 | Msa1324430:intron |
| ATAGTTGTTCATATTTGGTG+AGG | 0.581137 | 8_4:+34477877 | Msa1324440:three_prime_UTR |
| TTACATCTCAACCAGCGCCT+CGG | 0.581571 | 8_4:+34475397 | Msa1324440:CDS |
| ACTGCAATTTCAGCAGGAAG+CGG | 0.585191 | 8_4:-34475021 | Msa1324430:intron |
| TTGAAACTTCTGTAGTTTAG+GGG | 0.592256 | 8_4:+34478100 | Msa1324440:three_prime_UTR |
| ATGTTGTGGCAGCATGGATG+GGG | 0.602514 | 8_4:+34475191 | Msa1324440:CDS |
| GCAGGAAGCGGAGCTAAGGT+AGG | 0.605899 | 8_4:-34475009 | Msa1324430:intron |
| GTGCTAATGTTGTGGCAGCA+TGG | 0.605987 | 8_4:+34475185 | Msa1324440:CDS |
| TCTGCATTAATATTAAAGGA+AGG | 0.619229 | 8_4:+34474937 | Msa1324440:CDS |
| TTACAGATTGATGCTCATGA+TGG | 0.621330 | 8_4:+34476170 | Msa1324440:intron |
| ATACTAGAATTAATAATCGG+AGG | 0.623681 | 8_4:-34478149 | Msa1324430:intron |
| TGGCCTACAAGAGCATTTGG+AGG | 0.623760 | 8_4:+34476064 | Msa1324440:CDS |
| TTGTGAAGGACCGGGCAATG+AGG | 0.639575 | 8_4:-34475263 | Msa1324430:intron |
| TCCATCAATCGTGTATCATG+GGG | 0.646406 | 8_4:+34475902 | Msa1324440:CDS |
| TCAACAGATTGTGAAGGACC+GGG | 0.651999 | 8_4:-34475271 | Msa1324430:intron |
| GCTGCCACAACATTAGCACT+AGG | 0.654862 | 8_4:-34475181 | Msa1324430:intron |
| TATGCTCTAGTAGAAGTGCT+CGG | 0.657473 | 8_4:-34477857 | Msa1324430:intron |
| CAGATTGATGCTCATGATGG+TGG | 0.661463 | 8_4:+34476173 | Msa1324440:intron |
| ACCACTTCAACAGATTGTGA+AGG | 0.665246 | 8_4:-34475277 | Msa1324430:intron |
| CATTAGCACTAGGAGCAGCA+GGG | 0.679217 | 8_4:-34475171 | Msa1324430:intron |
| AGTGATTGAGAAGATGACGA+AGG | 0.704244 | 8_4:-34475223 | Msa1324430:intron |
| GCATGCTTTCCAAAACACAC+CGG | 0.710220 | 8_4:-34477902 | Msa1324430:intron |
| GGAAGTTCATCAAACAACCG+AGG | 0.724533 | 8_4:-34475414 | Msa1324430:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATAAAATTGTTATTTT+CGG | + | chr8_4:34475077-34475096 | Msa1324440:intron | 10.0% |
| !! | TTATTATAGTACTAAATTAA+AGG | - | chr8_4:34475753-34475772 | Msa1324430:intron | 10.0% |
| !!! | ATTATTAATAGTAATTTTAC+CGG | + | chr8_4:34477399-34477418 | Msa1324440:intron | 10.0% |
| !! | TAATATATGCTAATATTTAA+TGG | + | chr8_4:34477966-34477985 | Msa1324440:three_prime_UTR | 10.0% |
| ! | GGCGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477530-34477549 | Msa1324440:intron | 100.0% |
| ! | GCGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477531-34477550 | Msa1324440:intron | 100.0% |
| ! | CGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477532-34477551 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477533-34477552 | Msa1324440:intron | 100.0% |
| !! | CAAAATTAAGTAATAATAAG+TGG | - | chr8_4:34475132-34475151 | Msa1324430:intron | 15.0% |
| !!! | TGATATTTTATTTTCTTTTC+AGG | + | chr8_4:34475990-34476009 | Msa1324440:intron | 15.0% |
| !!! | AAATTTAGTAAAACTTTTGA+GGG | - | chr8_4:34476496-34476515 | Msa1324430:intron | 15.0% |
| !!! | TAAATTTAGTAAAACTTTTG+AGG | - | chr8_4:34476497-34476516 | Msa1324430:intron | 15.0% |
| !! | TATAATATAGGAGTTTATAT+AGG | + | chr8_4:34476636-34476655 | Msa1324440:intron | 15.0% |
| !! | AAATAAAATAAGAGAATAGA+AGG | + | chr8_4:34476768-34476787 | Msa1324440:intron | 15.0% |
| !! | AATAAAATAAGAGAATAGAA+GGG | + | chr8_4:34476769-34476788 | Msa1324440:intron | 15.0% |
| !!! | AAAACTTTTGAGTTAATTAT+GGG | + | chr8_4:34477081-34477100 | Msa1324440:intron | 15.0% |
| !! | CTTTAATTAATAATAACAGT+AGG | - | chr8_4:34477575-34477594 | Msa1324430:intron | 15.0% |
| !! | CTACTGTTATTATTAATTAA+AGG | + | chr8_4:34477573-34477592 | Msa1324440:intron | 15.0% |
| !! | TTATTATTATTAATTACCGA+CGG | + | chr8_4:34477657-34477676 | Msa1324440:intron | 15.0% |
| !! | ACAATACTAGAATTAATAAT+CGG | - | chr8_4:34478155-34478174 | Msa1324430:intron | 15.0% |
| !!! | TTTATTTTAATTTACCAGCA+AGG | - | chr8_4:34475515-34475534 | Msa1324430:intron | 20.0% |
| !! | AAAATAACTAATCAAGTTTC+TGG | - | chr8_4:34475561-34475580 | Msa1324430:intron | 20.0% |
| !! | CTGTTTCAATTAAACTTAAT+AGG | - | chr8_4:34475589-34475608 | Msa1324430:intron | 20.0% |
| !! | TTAAGTTTAATTGAAACAGT+TGG | + | chr8_4:34475590-34475609 | Msa1324440:intron | 20.0% |
| !!! | GAAATATTCCATATTTTGAA+AGG | - | chr8_4:34475677-34475696 | Msa1324430:intron | 20.0% |
| !!! | TTTTATATAGAGGAAGAAAA+TGG | + | chr8_4:34476668-34476687 | Msa1324440:intron | 20.0% |
| !! | ATAAAATAAGAGAATAGAAG+GGG | + | chr8_4:34476770-34476789 | Msa1324440:intron | 20.0% |
| !!! | GAAAACTTTTGAGTTAATTA+TGG | + | chr8_4:34477080-34477099 | Msa1324440:intron | 20.0% |
| !!! | AAACTTTTGAGTTAATTATG+GGG | + | chr8_4:34477082-34477101 | Msa1324440:intron | 20.0% |
| !! | TATGGTAATTACTTTGAATT+TGG | + | chr8_4:34477189-34477208 | Msa1324440:intron | 20.0% |
| !! | ATGGTAATTACTTTGAATTT+GGG | + | chr8_4:34477190-34477209 | Msa1324440:intron | 20.0% |
| !! | TGTTATTATTAATTAAAGGC+AGG | + | chr8_4:34477577-34477596 | Msa1324440:intron | 20.0% |
| !! | GTTATTATTAATTAAAGGCA+GGG | + | chr8_4:34477578-34477597 | Msa1324440:intron | 20.0% |
| ! | GACATCTGCATTAATATTAA+AGG | + | chr8_4:34474933-34474952 | Msa1324440:CDS | 25.0% |
| ! | TCTGCATTAATATTAAAGGA+AGG | + | chr8_4:34474937-34474956 | Msa1324440:CDS | 25.0% |
| ! | AATTGAAATCCCATAGAATA+TGG | - | chr8_4:34474965-34474984 | Msa1324430:intron | 25.0% |
| ! | ATTTCAATTTCACCTAGAAA+TGG | + | chr8_4:34474976-34474995 | Msa1324440:CDS | 25.0% |
| ! | TTTCGGTTGTTTATATACAT+TGG | + | chr8_4:34475094-34475113 | Msa1324440:intron | 25.0% |
| ! | AAAATGGAGAAATTTCACTT+TGG | + | chr8_4:34475618-34475637 | Msa1324440:CDS | 25.0% |
| ! | AAATGGAGAAATTTCACTTT+GGG | + | chr8_4:34475619-34475638 | Msa1324440:CDS | 25.0% |
| ! | TATCAAAGCCTTTCAAAATA+TGG | + | chr8_4:34475666-34475685 | Msa1324440:CDS | 25.0% |
| ! | ATGGAATATTTCCAATTGTT+CGG | + | chr8_4:34475685-34475704 | Msa1324440:CDS | 25.0% |
| ! | TAAAATGATCCTTTATGTCA+TGG | + | chr8_4:34475822-34475841 | Msa1324440:intron | 25.0% |
| !! | AGTAAAATGATCTTTTGAAC+AGG | + | chr8_4:34475853-34475872 | Msa1324440:intron | 25.0% |
| !!! | GCTGGTTTTTTTAAATGAAA+AGG | - | chr8_4:34476213-34476232 | Msa1324430:intron | 25.0% |
| ! | TGGAGATGATAAGTTAATTA+AGG | + | chr8_4:34476249-34476268 | Msa1324440:three_prime_UTR | 25.0% |
| !! | TCCTAGTGTTTTATCTATTT+TGG | + | chr8_4:34476382-34476401 | Msa1324440:intron | 25.0% |
| ! | ACCAAAATAGATAAAACACT+AGG | - | chr8_4:34476386-34476405 | Msa1324430:intron | 25.0% |
| !! | ACAAGAATTTTACATAGACT+TGG | + | chr8_4:34476558-34476577 | Msa1324440:intron | 25.0% |
| !!! | GCATTATCACTTTTATATAG+AGG | + | chr8_4:34476658-34476677 | Msa1324440:intron | 25.0% |
| ! | TAAAATAAGAGAATAGAAGG+GGG | + | chr8_4:34476771-34476790 | Msa1324440:intron | 25.0% |
| ! | TAGAGATTTCATGAAATTAG+AGG | + | chr8_4:34476891-34476910 | Msa1324440:intron | 25.0% |
| !!! | TCATTCATTGATTCTTTAGA+AGG | + | chr8_4:34477165-34477184 | Msa1324440:intron | 25.0% |
| !!! | CATTCATTGATTCTTTAGAA+GGG | + | chr8_4:34477166-34477185 | Msa1324440:intron | 25.0% |
| ! | TGGTAATTACTTTGAATTTG+GGG | + | chr8_4:34477191-34477210 | Msa1324440:intron | 25.0% |
| ! | TTAAATTGTTGGAACAATGT+TGG | + | chr8_4:34477260-34477279 | Msa1324440:intron | 25.0% |
| ! | TAAATTGTTGGAACAATGTT+GGG | + | chr8_4:34477261-34477280 | Msa1324440:intron | 25.0% |
| !! | ATTAATAGTAATTTTACCGG+CGG | + | chr8_4:34477402-34477421 | Msa1324440:intron | 25.0% |
| !! | TTACATGTGATTATGTCTTT+TGG | + | chr8_4:34477938-34477957 | Msa1324440:three_prime_UTR | 25.0% |
| !! | TACATGTGATTATGTCTTTT+GGG | + | chr8_4:34477939-34477958 | Msa1324440:three_prime_UTR | 25.0% |
| !!! | TTTTGAAACTTCTGTAGTTT+AGG | + | chr8_4:34478098-34478117 | Msa1324440:three_prime_UTR | 25.0% |
| !! | TTTGAAACTTCTGTAGTTTA+GGG | + | chr8_4:34478099-34478118 | Msa1324440:three_prime_UTR | 25.0% |
| ! | ATACTAGAATTAATAATCGG+AGG | - | chr8_4:34478152-34478171 | Msa1324430:intron | 25.0% |
| CTATATTGACAACTCTTTAC+AGG | + | chr8_4:34475353-34475372 | Msa1324440:intron | 30.0% | |
| AACTTGCAAACAATAGTTGT+AGG | - | chr8_4:34475438-34475457 | Msa1324430:intron | 30.0% | |
| ATTGTTTGCAAGTTACATCA+AGG | + | chr8_4:34475444-34475463 | Msa1324440:CDS | 30.0% | |
| AGGATCAACTGTAACAAATA+TGG | + | chr8_4:34475464-34475483 | Msa1324440:CDS | 30.0% | |
| CTTTGAATTTGAAAGAATCG+TGG | + | chr8_4:34475876-34475895 | Msa1324440:CDS | 30.0% | |
| AAGCATTAATCAAGCAACAT+CGG | - | chr8_4:34475968-34475987 | Msa1324430:intron | 30.0% | |
| AGACTGAAGTTTCAAAATAG+TGG | - | chr8_4:34476409-34476428 | Msa1324430:intron | 30.0% | |
| ! | GGTATGACATAGTTATTTCA+TGG | - | chr8_4:34476475-34476494 | Msa1324430:intron | 30.0% |
| TGTAGATCAAGTTTATTGCT+GGG | + | chr8_4:34476914-34476933 | Msa1324440:intron | 30.0% | |
| AACATGCAATAAGGAATAGA+TGG | + | chr8_4:34476943-34476962 | Msa1324440:intron | 30.0% | |
| ! | AACAAGGATTTGTGTTGATA+CGG | + | chr8_4:34477008-34477027 | Msa1324440:intron | 30.0% |
| GAAGCTTAAAGTGATAACAT+AGG | - | chr8_4:34477120-34477139 | Msa1324430:intron | 30.0% | |
| ! | ATTGATTCTTTAGAAGGGTA+TGG | + | chr8_4:34477171-34477190 | Msa1324440:intron | 30.0% |
| ! | TGAATTTCGTTGGATACTTT+TGG | + | chr8_4:34477233-34477252 | Msa1324440:intron | 30.0% |
| ! | GAATTTCGTTGGATACTTTT+GGG | + | chr8_4:34477234-34477253 | Msa1324440:intron | 30.0% |
| !! | CTTTTGGGAGTTTAAATTGT+TGG | + | chr8_4:34477249-34477268 | Msa1324440:intron | 30.0% |
| GTATCTGTGGATAATAACAT+TGG | + | chr8_4:34477328-34477347 | Msa1324440:intron | 30.0% | |
| ! | TTAATAGTAATTTTACCGGC+GGG | + | chr8_4:34477403-34477422 | Msa1324440:intron | 30.0% |
| CCTCTATATGCGTTAATTAT+AGG | - | chr8_4:34477512-34477531 | Msa1324430:intron | 30.0% | |
| CCTATAATTAACGCATATAG+AGG | + | chr8_4:34477509-34477528 | Msa1324440:intron | 30.0% | |
| ATAATTAACGCATATAGAGG+CGG | + | chr8_4:34477512-34477531 | Msa1324440:intron | 30.0% | |
| TGTCTCTAAGTTTCAATAGT+CGG | - | chr8_4:34477620-34477639 | Msa1324430:intron | 30.0% | |
| TAACGAGTAATATAACAAGC+AGG | - | chr8_4:34477772-34477791 | Msa1324430:intron | 30.0% | |
| AGAGCATAGTTGTTCATATT+TGG | + | chr8_4:34477872-34477891 | Msa1324440:three_prime_UTR | 30.0% | |
| ! | ATAGTTGTTCATATTTGGTG+AGG | + | chr8_4:34477877-34477896 | Msa1324440:three_prime_UTR | 30.0% |
| ! | ACATGTGATTATGTCTTTTG+GGG | + | chr8_4:34477940-34477959 | Msa1324440:three_prime_UTR | 30.0% |
| ATAATCTACTCAAACAGTTC+AGG | - | chr8_4:34478062-34478081 | Msa1324430:intron | 30.0% | |
| TGTTTGAGTAGATTATGTAC+AGG | + | chr8_4:34478066-34478085 | Msa1324440:three_prime_UTR | 30.0% | |
| TTGAAACTTCTGTAGTTTAG+GGG | + | chr8_4:34478100-34478119 | Msa1324440:three_prime_UTR | 30.0% | |
| AAGGAAGGATCCATATTCTA+TGG | + | chr8_4:34474952-34474971 | Msa1324440:CDS | 35.0% | |
| AGGAAGGATCCATATTCTAT+GGG | + | chr8_4:34474953-34474972 | Msa1324440:CDS | 35.0% | |
| CTGAAATTGCAGTATGAACT+TGG | + | chr8_4:34475031-34475050 | Msa1324440:intron | 35.0% | |
| GCAAGGATAGAATGAATTGA+TGG | - | chr8_4:34475498-34475517 | Msa1324430:intron | 35.0% | |
| TCAATTCATTCTATCCTTGC+TGG | + | chr8_4:34475498-34475517 | Msa1324440:CDS | 35.0% | |
| !! | GAAACAGTTGGTAGTGAAAA+TGG | + | chr8_4:34475602-34475621 | Msa1324440:intron | 35.0% |
| ! | AAATTTCACTTTGGGAAGCA+AGG | + | chr8_4:34475627-34475646 | Msa1324440:CDS | 35.0% |
| CTGAAATTTGACCGAACAAT+TGG | - | chr8_4:34475699-34475718 | Msa1324430:intron | 35.0% | |
| CAATTGTTCGGTCAAATTTC+AGG | + | chr8_4:34475697-34475716 | Msa1324440:CDS | 35.0% | |
| AATGATCCTTTATGTCATGG+TGG | + | chr8_4:34475825-34475844 | Msa1324440:intron | 35.0% | |
| TAAACTCCACCATGACATAA+AGG | - | chr8_4:34475834-34475853 | Msa1324430:intron | 35.0% | |
| TATCCATCAATCGTGTATCA+TGG | + | chr8_4:34475900-34475919 | Msa1324440:CDS | 35.0% | |
| ATCCATCAATCGTGTATCAT+GGG | + | chr8_4:34475901-34475920 | Msa1324440:CDS | 35.0% | |
| TTACCAATAAAACACGCATC+CGG | - | chr8_4:34475929-34475948 | Msa1324430:intron | 35.0% | |
| TATACCCATCAAGTCCATAA+TGG | + | chr8_4:34476044-34476063 | Msa1324440:CDS | 35.0% | |
| TTACAGATTGATGCTCATGA+TGG | + | chr8_4:34476170-34476189 | Msa1324440:intron | 35.0% | |
| TGTCTCATTCTGTGTTTGAA+TGG | + | chr8_4:34476306-34476325 | Msa1324440:intron | 35.0% | |
| ATAGAGGAAGAAAATGGTCT+TGG | + | chr8_4:34476674-34476693 | Msa1324440:intron | 35.0% | |
| ! | TGGCTTTTCAGCAACTAATT+GGG | - | chr8_4:34476731-34476750 | Msa1324430:intron | 35.0% |
| ! | ATGGCTTTTCAGCAACTAAT+TGG | - | chr8_4:34476732-34476751 | Msa1324430:intron | 35.0% |
| GTGTAGATCAAGTTTATTGC+TGG | + | chr8_4:34476913-34476932 | Msa1324440:intron | 35.0% | |
| TAAGGAATAGATGGCTGAAT+TGG | + | chr8_4:34476952-34476971 | Msa1324440:intron | 35.0% | |
| AAGGAATAGATGGCTGAATT+GGG | + | chr8_4:34476953-34476972 | Msa1324440:intron | 35.0% | |
| ! | TTTTCTAAGTTGCTGAGAAG+TGG | - | chr8_4:34477065-34477084 | Msa1324430:intron | 35.0% |
| GTCAAATGCATGAATTTCGT+TGG | + | chr8_4:34477223-34477242 | Msa1324440:intron | 35.0% | |
| TGAAGAATGTCATCAGAACA+TGG | + | chr8_4:34477297-34477316 | Msa1324440:intron | 35.0% | |
| ! | TAATAGTAATTTTACCGGCG+GGG | + | chr8_4:34477404-34477423 | Msa1324440:intron | 35.0% |
| TAATTAACGCATATAGAGGC+GGG | + | chr8_4:34477513-34477532 | Msa1324440:intron | 35.0% | |
| CATACATATAAACTCTCCGT+CGG | - | chr8_4:34477676-34477695 | Msa1324430:intron | 35.0% | |
| ATTACTCGTTATCTACTCAC+TGG | + | chr8_4:34477781-34477800 | Msa1324440:intron | 35.0% | |
| ! | CATCAAGAGCAAAGTTGTTT+TGG | - | chr8_4:34478019-34478038 | Msa1324430:intron | 35.0% |
| TTTGCTCTTGATGCTTAATC+CGG | + | chr8_4:34478026-34478045 | Msa1324440:three_prime_UTR | 35.0% | |
| GTTCATACTGCAATTTCAGC+AGG | - | chr8_4:34475030-34475049 | Msa1324430:intron | 40.0% | |
| AGTGATTGAGAAGATGACGA+AGG | - | chr8_4:34475226-34475245 | Msa1324430:intron | 40.0% | |
| TTCAACAGATTGTGAAGGAC+CGG | - | chr8_4:34475275-34475294 | Msa1324430:intron | 40.0% | |
| TCCTTCACAATCTGTTGAAG+TGG | + | chr8_4:34475276-34475295 | Msa1324440:CDS | 40.0% | |
| ACCACTTCAACAGATTGTGA+AGG | - | chr8_4:34475280-34475299 | Msa1324430:intron | 40.0% | |
| TCCATCAATCGTGTATCATG+GGG | + | chr8_4:34475902-34475921 | Msa1324440:CDS | 40.0% | |
| TACCAATAAAACACGCATCC+GGG | - | chr8_4:34475928-34475947 | Msa1324430:intron | 40.0% | |
| TAGGCCATTATGGACTTGAT+GGG | - | chr8_4:34476051-34476070 | Msa1324430:intron | 40.0% | |
| AATGCTCTTGTAGGCCATTA+TGG | - | chr8_4:34476061-34476080 | Msa1324430:intron | 40.0% | |
| !! | TAATGGCCTACAAGAGCATT+TGG | + | chr8_4:34476061-34476080 | Msa1324440:CDS | 40.0% |
| ATACCTCCAAATGCTCTTGT+AGG | - | chr8_4:34476070-34476089 | Msa1324430:intron | 40.0% | |
| !! | TGATGGTGGTGTTAATGACT+TGG | + | chr8_4:34476187-34476206 | Msa1324440:CDS | 40.0% |
| ! | AAGAAAATGGTCTTGGTGAC+AGG | + | chr8_4:34476681-34476700 | Msa1324440:intron | 40.0% |
| ! | AGAAAATGGTCTTGGTGACA+GGG | + | chr8_4:34476682-34476701 | Msa1324440:intron | 40.0% |
| ATAGAAGGGGGAAAAAGAGA+AGG | + | chr8_4:34476783-34476802 | Msa1324440:intron | 40.0% | |
| TAGAAGGGGGAAAAAGAGAA+GGG | + | chr8_4:34476784-34476803 | Msa1324440:intron | 40.0% | |
| GAGTTAGAAAGGGAAACGAA+GGG | + | chr8_4:34476814-34476833 | Msa1324440:intron | 40.0% | |
| GGGTAGTGTAACATGCAATA+AGG | + | chr8_4:34476934-34476953 | Msa1324440:intron | 40.0% | |
| ATGGCTGAATTGGGTTACTT+TGG | + | chr8_4:34476962-34476981 | Msa1324440:intron | 40.0% | |
| ! | TGGCTGAATTGGGTTACTTT+GGG | + | chr8_4:34476963-34476982 | Msa1324440:intron | 40.0% |
| !! | TGGGTTACTTTGGGATACTA+AGG | + | chr8_4:34476972-34476991 | Msa1324440:intron | 40.0% |
| TGGGATACTAAGGATAGAAG+AGG | + | chr8_4:34476982-34477001 | Msa1324440:intron | 40.0% | |
| GGGATACTAAGGATAGAAGA+GGG | + | chr8_4:34476983-34477002 | Msa1324440:intron | 40.0% | |
| TGTTGGAACAATGTTGGGTT+TGG | + | chr8_4:34477266-34477285 | Msa1324440:intron | 40.0% | |
| CATGGTAGTTGTAGTATCTG+TGG | + | chr8_4:34477315-34477334 | Msa1324440:intron | 40.0% | |
| AGCCTATCGTCACTATTTAC+AGG | + | chr8_4:34477443-34477462 | Msa1324440:intron | 40.0% | |
| CTATCGTCACTATTTACAGG+CGG | + | chr8_4:34477446-34477465 | Msa1324440:intron | 40.0% | |
| TATCGTCACTATTTACAGGC+GGG | + | chr8_4:34477447-34477466 | Msa1324440:intron | 40.0% | |
| AATTAACGCATATAGAGGCG+GGG | + | chr8_4:34477514-34477533 | Msa1324440:intron | 40.0% | |
| !! | TATGCTCTAGTAGAAGTGCT+CGG | - | chr8_4:34477860-34477879 | Msa1324430:intron | 40.0% |
| ! | GTTCATATTTGGTGAGGTTC+CGG | + | chr8_4:34477883-34477902 | Msa1324440:three_prime_UTR | 40.0% |
| ACTGCAATTTCAGCAGGAAG+CGG | - | chr8_4:34475024-34475043 | Msa1324430:intron | 45.0% | |
| TGCTCCTAGTGCTAATGTTG+TGG | + | chr8_4:34475177-34475196 | Msa1324440:CDS | 45.0% | |
| TAATGTTGTGGCAGCATGGA+TGG | + | chr8_4:34475189-34475208 | Msa1324440:CDS | 45.0% | |
| AATGTTGTGGCAGCATGGAT+GGG | + | chr8_4:34475190-34475209 | Msa1324440:CDS | 45.0% | |
| TCAACAGATTGTGAAGGACC+GGG | - | chr8_4:34475274-34475293 | Msa1324430:intron | 45.0% | |
| GGAAGTTCATCAAACAACCG+AGG | - | chr8_4:34475417-34475436 | Msa1324430:intron | 45.0% | |
| GAGTGATGAATGCACTGCTA+TGG | + | chr8_4:34475796-34475815 | Msa1324440:intron | 45.0% | |
| GTAGGCCATTATGGACTTGA+TGG | - | chr8_4:34476052-34476071 | Msa1324430:intron | 45.0% | |
| CAGATTGATGCTCATGATGG+TGG | + | chr8_4:34476173-34476192 | Msa1324440:intron | 45.0% | |
| CACAAGTTACAACGCATAGC+TGG | - | chr8_4:34476231-34476250 | Msa1324430:intron | 45.0% | |
| CAGCTATGCGTTGTAACTTG+TGG | + | chr8_4:34476229-34476248 | Msa1324440:exon | 45.0% | |
| ! | GGAAAAAGAGAAGGGTACGA+GGG | + | chr8_4:34476792-34476811 | Msa1324440:intron | 45.0% |
| GGAGTTAGAAAGGGAAACGA+AGG | + | chr8_4:34476813-34476832 | Msa1324440:intron | 45.0% | |
| AGGATAGAAGAGGGAGAACA+AGG | + | chr8_4:34476992-34477011 | Msa1324440:intron | 45.0% | |
| CGCCTGTAAATAGTGACGAT+AGG | - | chr8_4:34477448-34477467 | Msa1324430:intron | 45.0% | |
| ATCGTCACTATTTACAGGCG+GGG | + | chr8_4:34477448-34477467 | Msa1324440:intron | 45.0% | |
| ATTAACGCATATAGAGGCGG+GGG | + | chr8_4:34477515-34477534 | Msa1324440:intron | 45.0% | |
| AATTAAAGGCAGGGAGCCTA+AGG | + | chr8_4:34477587-34477606 | Msa1324440:intron | 45.0% | |
| GCATGCTTTCCAAAACACAC+CGG | - | chr8_4:34477905-34477924 | Msa1324430:intron | 45.0% | |
| !! | ACTAATTTATTATATAATAT+AGG | + | chr8_4:34476624-34476643 | Msa1324440:intron | 5.0% |
| !!! | TTTTTTTATTTTTTTCTTAA+TGG | - | chr8_4:34476751-34476770 | Msa1324430:intron | 5.0% |
| GGCGTGCAATGTCCATTTCT+AGG | - | chr8_4:34474991-34475010 | Msa1324430:intron | 50.0% | |
| CATTAGCACTAGGAGCAGCA+GGG | - | chr8_4:34475174-34475193 | Msa1324430:intron | 50.0% | |
| ACATTAGCACTAGGAGCAGC+AGG | - | chr8_4:34475175-34475194 | Msa1324430:intron | 50.0% | |
| GCTGCCACAACATTAGCACT+AGG | - | chr8_4:34475184-34475203 | Msa1324430:intron | 50.0% | |
| GTGCTAATGTTGTGGCAGCA+TGG | + | chr8_4:34475185-34475204 | Msa1324440:CDS | 50.0% | |
| ATGTTGTGGCAGCATGGATG+GGG | + | chr8_4:34475191-34475210 | Msa1324440:CDS | 50.0% | |
| !! | AGGCGCTGGTTGAGATGTAA+AGG | - | chr8_4:34475397-34475416 | Msa1324430:intron | 50.0% |
| TTACATCTCAACCAGCGCCT+CGG | + | chr8_4:34475397-34475416 | Msa1324440:CDS | 50.0% | |
| GCCCCATGATACACGATTGA+TGG | - | chr8_4:34475906-34475925 | Msa1324430:intron | 50.0% | |
| !! | TGGCCTACAAGAGCATTTGG+AGG | + | chr8_4:34476064-34476083 | Msa1324440:CDS | 50.0% |
| ! | GGGAAAAAGAGAAGGGTACG+AGG | + | chr8_4:34476791-34476810 | Msa1324440:intron | 50.0% |
| AGGGTACGAGGGAGTTAGAA+AGG | + | chr8_4:34476803-34476822 | Msa1324440:intron | 50.0% | |
| GGGTACGAGGGAGTTAGAAA+GGG | + | chr8_4:34476804-34476823 | Msa1324440:intron | 50.0% | |
| !! | AGTGGACTGAGAACTGATGC+TGG | - | chr8_4:34477047-34477066 | Msa1324430:intron | 50.0% |
| TTAACGCATATAGAGGCGGG+GGG | + | chr8_4:34477516-34477535 | Msa1324440:intron | 50.0% | |
| CTTGATGCTTAATCCGGACC+TGG | + | chr8_4:34478032-34478051 | Msa1324440:three_prime_UTR | 50.0% | |
| ATGCTTAATCCGGACCTGGT+TGG | + | chr8_4:34478036-34478055 | Msa1324440:three_prime_UTR | 50.0% | |
| TCAAACAGTTCAGGCCAACC+AGG | - | chr8_4:34478053-34478072 | Msa1324430:intron | 50.0% | |
| TTCAGCAGGAAGCGGAGCTA+AGG | - | chr8_4:34475016-34475035 | Msa1324430:intron | 55.0% | |
| TTGTGAAGGACCGGGCAATG+AGG | - | chr8_4:34475266-34475285 | Msa1324430:intron | 55.0% | |
| TCATCAAACAACCGAGGCGC+TGG | - | chr8_4:34475411-34475430 | Msa1324430:intron | 55.0% | |
| CAATCGTGTATCATGGGGCC+CGG | + | chr8_4:34475907-34475926 | Msa1324440:CDS | 55.0% | |
| ! | GGCCCGGATGCGTGTTTTAT+TGG | + | chr8_4:34475923-34475942 | Msa1324440:CDS | 55.0% |
| GAAAGGGAAACGAAGGGAGC+TGG | + | chr8_4:34476820-34476839 | Msa1324440:intron | 55.0% | |
| TAAGGCGGGGAGCCTGATTA+AGG | + | chr8_4:34477479-34477498 | Msa1324440:intron | 55.0% | |
| ATAGGCTCCCCGCCTTAATC+AGG | - | chr8_4:34477494-34477513 | Msa1324430:intron | 55.0% | |
| TAACGCATATAGAGGCGGGG+GGG | + | chr8_4:34477517-34477536 | Msa1324440:intron | 55.0% | |
| TAAAGGCAGGGAGCCTAAGG+CGG | + | chr8_4:34477590-34477609 | Msa1324440:intron | 55.0% | |
| ! | GGTGAGGTTCCGGTGTGTTT+TGG | + | chr8_4:34477893-34477912 | Msa1324440:three_prime_UTR | 55.0% |
| GCAGGAAGCGGAGCTAAGGT+AGG | - | chr8_4:34475012-34475031 | Msa1324430:intron | 60.0% | |
| ! | GCAGCAGGGACTGGTGGAAA+TGG | - | chr8_4:34475160-34475179 | Msa1324430:intron | 60.0% |
| GTGGCAGCATGGATGGGGAA+TGG | + | chr8_4:34475196-34475215 | Msa1324440:CDS | 60.0% | |
| CTCGCAGCTTCCTCATTGCC+CGG | + | chr8_4:34475253-34475272 | Msa1324440:CDS | 60.0% | |
| CGATAGGCTCCCCGTCAAAG+TGG | - | chr8_4:34477432-34477451 | Msa1324430:intron | 60.0% | |
| ACAGGCGGGGAGCCTAACTA+AGG | + | chr8_4:34477461-34477480 | Msa1324440:intron | 60.0% | |
| TCAGGCTCCCCGCCTTAGTT+AGG | - | chr8_4:34477476-34477495 | Msa1324430:intron | 60.0% | |
| AACGCATATAGAGGCGGGGG+GGG | + | chr8_4:34477518-34477537 | Msa1324440:intron | 60.0% | |
| AAAGGCAGGGAGCCTAAGGC+GGG | + | chr8_4:34477591-34477610 | Msa1324440:intron | 60.0% | |
| ! | AATAGTCGGCTCCCCGCCTT+AGG | - | chr8_4:34477606-34477625 | Msa1324430:intron | 60.0% |
| CTCGGTTCTGCACGTGCTAG+TGG | - | chr8_4:34477842-34477861 | Msa1324430:intron | 60.0% | |
| CAGTTCAGGCCAACCAGGTC+CGG | - | chr8_4:34478048-34478067 | Msa1324430:intron | 60.0% | |
| CTAGGAGCAGCAGGGACTGG+TGG | - | chr8_4:34475166-34475185 | Msa1324430:intron | 65.0% | |
| GCACTAGGAGCAGCAGGGAC+TGG | - | chr8_4:34475169-34475188 | Msa1324430:intron | 65.0% | |
| GGCGGGGAGCCTAACTAAGG+CGG | + | chr8_4:34477464-34477483 | Msa1324440:intron | 65.0% | |
| GCGGGGAGCCTAACTAAGGC+GGG | + | chr8_4:34477465-34477484 | Msa1324440:intron | 65.0% | |
| CGGGGAGCCTAACTAAGGCG+GGG | + | chr8_4:34477466-34477485 | Msa1324440:intron | 65.0% | |
| GGCGGGGAGCCTGATTAAGG+CGG | + | chr8_4:34477482-34477501 | Msa1324440:intron | 65.0% | |
| GCGGGGAGCCTGATTAAGGC+GGG | + | chr8_4:34477483-34477502 | Msa1324440:intron | 65.0% | |
| CGGGGAGCCTGATTAAGGCG+GGG | + | chr8_4:34477484-34477503 | Msa1324440:intron | 65.0% | |
| ACGCATATAGAGGCGGGGGG+GGG | + | chr8_4:34477519-34477538 | Msa1324440:intron | 65.0% | |
| AAGGCAGGGAGCCTAAGGCG+GGG | + | chr8_4:34477592-34477611 | Msa1324440:intron | 65.0% | |
| CCGTCAAAGTGGCTCCCCGC+CGG | - | chr8_4:34477421-34477440 | Msa1324430:intron | 70.0% | |
| ! | CCGGCGGGGAGCCACTTTGA+CGG | + | chr8_4:34477418-34477437 | Msa1324440:intron | 70.0% |
| ! | CGGCGGGGAGCCACTTTGAC+GGG | + | chr8_4:34477419-34477438 | Msa1324440:intron | 70.0% |
| ! | GGCGGGGAGCCACTTTGACG+GGG | + | chr8_4:34477420-34477439 | Msa1324440:intron | 70.0% |
| CGCATATAGAGGCGGGGGGG+GGG | + | chr8_4:34477520-34477539 | Msa1324440:intron | 70.0% | |
| GCATATAGAGGCGGGGGGGG+GGG | + | chr8_4:34477521-34477540 | Msa1324440:intron | 70.0% | |
| CATATAGAGGCGGGGGGGGG+GGG | + | chr8_4:34477522-34477541 | Msa1324440:intron | 70.0% | |
| ATATAGAGGCGGGGGGGGGG+GGG | + | chr8_4:34477523-34477542 | Msa1324440:intron | 70.0% | |
| TATAGAGGCGGGGGGGGGGG+GGG | + | chr8_4:34477524-34477543 | Msa1324440:intron | 75.0% | |
| ! | ATAGAGGCGGGGGGGGGGGG+GGG | + | chr8_4:34477525-34477544 | Msa1324440:intron | 80.0% |
| ! | TAGAGGCGGGGGGGGGGGGG+GGG | + | chr8_4:34477526-34477545 | Msa1324440:intron | 85.0% |
| ! | AGAGGCGGGGGGGGGGGGGG+GGG | + | chr8_4:34477527-34477546 | Msa1324440:intron | 90.0% |
| ! | GAGGCGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477528-34477547 | Msa1324440:intron | 95.0% |
| ! | AGGCGGGGGGGGGGGGGGGG+GGG | + | chr8_4:34477529-34477548 | Msa1324440:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 34474916 | 34478203 | 34474916 | ID=Msa1324440;Name=Msa1324440 |
| chr8_4 | mRNA | 34474916 | 34478203 | 34474916 | ID=Msa1324440-mRNA-1;Parent=Msa1324440;Name=Msa1324440-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.85|0.75|1|0.85|0.75|8|393|244 |
| chr8_4 | exon | 34474916 | 34475041 | 34474916 | ID=Msa1324440-mRNA-1:exon:10976;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34475157 | 34475297 | 34475157 | ID=Msa1324440-mRNA-1:exon:10977;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34475375 | 34475519 | 34475375 | ID=Msa1324440-mRNA-1:exon:10978;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34475609 | 34475718 | 34475609 | ID=Msa1324440-mRNA-1:exon:10979;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34475875 | 34475944 | 34475875 | ID=Msa1324440-mRNA-1:exon:10980;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34476012 | 34476085 | 34476012 | ID=Msa1324440-mRNA-1:exon:10981;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34476176 | 34476270 | 34476176 | ID=Msa1324440-mRNA-1:exon:10982;Parent=Msa1324440-mRNA-1 |
| chr8_4 | exon | 34477837 | 34478203 | 34477837 | ID=Msa1324440-mRNA-1:exon:10983;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34474916 | 34475041 | 34474916 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34475157 | 34475297 | 34475157 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34475375 | 34475519 | 34475375 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34475609 | 34475718 | 34475609 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34475875 | 34475944 | 34475875 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34476012 | 34476085 | 34476012 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | CDS | 34476176 | 34476244 | 34476176 | ID=Msa1324440-mRNA-1:cds;Parent=Msa1324440-mRNA-1 |
| chr8_4 | three_prime_UTR | 34476245 | 34476270 | 34476245 | ID=Msa1324440-mRNA-1:three_prime_utr;Parent=Msa1324440-mRNA-1 |
| chr8_4 | three_prime_UTR | 34477837 | 34478203 | 34477837 | ID=Msa1324440-mRNA-1:three_prime_utr;Parent=Msa1324440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
