AlfalfaGEDB | Msa0932830

M. sativa cultivar zhongmu-4 / Msa0932830

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00582.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932830	XP_003618221.1	89.714	175	1	1	1	158	1	175	4.99e-109	318

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932830	sp\|Q8LGG8\|USPAL_ARATH	66.286	175	42	1	1	158	1	175	3.18e-80	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932830	G7KHM7	89.714	175	1	1	1	158	1	175	2.39e-109	318

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0932830	0.813363	2.658094e-51	-8.615850e-47
Msa0011170	Msa0932830	0.800950	1.133040e-48	-8.615850e-47
Msa0020410	Msa0932830	0.838595	2.618975e-57	-8.615850e-47
Msa0026910	Msa0932830	0.839820	1.260882e-57	-8.615850e-47
Msa0028660	Msa0932830	0.816694	4.844924e-52	-8.615850e-47
Msa0036140	Msa0932830	0.805344	1.396571e-49	-8.615850e-47
Msa0037880	Msa0932830	0.841876	3.643003e-58	-8.615850e-47
Msa0043980	Msa0932830	0.859676	3.507342e-63	-8.615850e-47
Msa0044000	Msa0932830	0.817172	3.785709e-52	-8.615850e-47
Msa0045790	Msa0932830	0.805166	1.522362e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932830	MtrunA17_Chr6g0450171	89.714	175	1	1	1	158	1	175	4.59e-113	318
Msa0932830	MtrunA17_Chr1g0194801	29.070	172	81	6	1	146	1	157	5.19e-16	70.9
Msa0932830	MtrunA17_Chr4g0001641	48.333	60	29	1	86	145	8	65	1.10e-14	65.1
Msa0932830	MtrunA17_Chr1g0192651	27.811	169	95	5	3	154	6	164	6.51e-14	65.5
Msa0932830	MtrunA17_Chr5g0427291	48.333	60	29	1	86	145	113	170	7.06e-14	65.9
Msa0932830	MtrunA17_Chr1g0195661	25.316	158	90	4	8	146	14	162	1.91e-13	64.3
Msa0932830	MtrunA17_Chr1g0176311	43.396	53	30	0	93	145	129	181	8.94e-13	63.2
Msa0932830	MtrunA17_Chr5g0433951	28.571	147	77	4	24	145	14	157	9.82e-13	62.4
Msa0932830	MtrunA17_Chr1g0176321	41.509	53	31	0	93	145	116	168	3.86e-12	60.8
Msa0932830	MtrunA17_Chr4g0032261	42.623	61	35	0	91	151	103	163	1.16e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0932830	AT5G14680.1	65.143	175	44	1	1	158	1	175	1.55e-81	238
Msa0932830	AT3G01520.1	66.286	175	42	1	1	158	1	175	3.23e-81	238
Msa0932830	AT3G11930.2	28.994	169	81	6	7	145	34	193	9.08e-16	71.6
Msa0932830	AT3G58450.1	50.000	60	28	1	86	145	131	188	2.71e-15	70.5
Msa0932830	AT3G58450.2	50.000	60	28	1	86	145	124	181	3.33e-15	70.1
Msa0932830	AT3G11930.4	28.235	170	82	6	7	145	34	194	1.69e-14	68.2
Msa0932830	AT3G11930.1	36.082	97	45	2	66	145	96	192	1.97e-14	67.8
Msa0932830	AT1G68300.1	26.061	165	84	5	7	148	11	160	5.82e-14	65.9
Msa0932830	AT3G62550.1	44.828	58	32	0	93	150	104	161	1.66e-13	64.7
Msa0932830	AT1G09740.2	40.845	71	42	0	81	151	100	170	2.63e-12	61.6

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Find 46 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCAGGAAAAGGCTAG+AGG	0.635603	6_3:+1128507	Msa0932830:CDS
AACAGCAGGAAAAGGCTAGA+GGG	0.609669	6_3:+1128508	Msa0932830:CDS
AACATTGTTACGAATGATTT+TGG	0.101569	6_3:-1125757	None:intergenic
AACTCGTTCTCTTCTTCAAA+TGG	0.395053	6_3:-1125608	None:intergenic
ACTCAGTGAAAATCAAGAAA+TGG	0.366690	6_3:+1125632	Msa0932830:exon
AGGAACTGACCGTCTTCATC+AGG	0.480141	6_3:-1125816	None:intergenic
ATATAGATTACCTGTGTTTG+TGG	0.485118	6_3:+1129925	Msa0932830:three_prime_UTR
ATGCATGAACCATATCATTT+TGG	0.239322	6_3:+1130202	Msa0932830:three_prime_UTR
CAAAGAAGTGATATTGAATG+AGG	0.559803	6_3:+1128983	Msa0932830:CDS
CAATGCAGATGAAACTCCAA+GGG	0.667475	6_3:+1129871	Msa0932830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCAGTGAAAATCAAGAAA+TGG	+	chr6_3:1125632-1125651	Msa0932830:exon	30.0%
CTCAGTGAAAATCAAGAAAT+GGG	+	chr6_3:1125633-1125652	Msa0932830:exon	30.0%
TCAAATTACTACTGATGTGT+CGG	+	chr6_3:1126005-1126024	Msa0932830:intron	30.0%
AGAGAAAATGACGTAATTGA+AGG	-	chr6_3:1126161-1126180	None:intergenic	30.0%
TTGAATGTAATCACATGTGT+CGG	-	chr6_3:1126061-1126080	None:intergenic	30.0%
TACTACTGATATCAATGTGT+CGG	+	chr6_3:1126364-1126383	Msa0932830:intron	30.0%
GAACATTGATAAGATTGTAG+TGG	+	chr6_3:1126677-1126696	Msa0932830:intron	30.0%
TTGTTATGTTAGGGAATGTT+TGG	+	chr6_3:1126709-1126728	Msa0932830:intron	30.0%
GAGCTTATGGAAATAGTTTA+TGG	+	chr6_3:1126758-1126777	Msa0932830:intron	30.0%
CTTATTGCAATAAGTTCACT+GGG	+	chr6_3:1127226-1127245	Msa0932830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	1125516	1130289	1125516	ID=Msa0932830;Name=Msa0932830
chr6_3	mRNA	1125516	1130289	1125516	ID=Msa0932830-mRNA-1;Parent=Msa0932830;Name=Msa0932830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=135\|0.66\|0.5\|1\|1\|1\|4\|379\|158
chr6_3	exon	1125516	1125828	1125516	ID=Msa0932830-mRNA-1:exon:456;Parent=Msa0932830-mRNA-1
chr6_3	exon	1128454	1128551	1128454	ID=Msa0932830-mRNA-1:exon:457;Parent=Msa0932830-mRNA-1
chr6_3	exon	1128975	1129066	1128975	ID=Msa0932830-mRNA-1:exon:458;Parent=Msa0932830-mRNA-1
chr6_3	exon	1129802	1130289	1129802	ID=Msa0932830-mRNA-1:exon:459;Parent=Msa0932830-mRNA-1
chr6_3	five_prime_UTR	1125516	1125650	1125516	ID=Msa0932830-mRNA-1:five_prime_utr;Parent=Msa0932830-mRNA-1
chr6_3	CDS	1125651	1125828	1125651	ID=Msa0932830-mRNA-1:cds;Parent=Msa0932830-mRNA-1
chr6_3	CDS	1128454	1128551	1128454	ID=Msa0932830-mRNA-1:cds;Parent=Msa0932830-mRNA-1
chr6_3	CDS	1128975	1129066	1128975	ID=Msa0932830-mRNA-1:cds;Parent=Msa0932830-mRNA-1
chr6_3	CDS	1129802	1129910	1129802	ID=Msa0932830-mRNA-1:cds;Parent=Msa0932830-mRNA-1
chr6_3	three_prime_UTR	1129911	1130289	1129911	ID=Msa0932830-mRNA-1:three_prime_utr;Parent=Msa0932830-mRNA-1

Gene Sequence

>Msa0932830

ATGGGAGAAGAATCAACACGAGTTATGATTGGAGTGAACGAGTCAAGCTTGAAAGGTTATCCACATCCTTCAATCAGTAGCAAAGGCGCTTTCGATTGGACCGTTTCCAAAATCATTCGTAACAATGTTTCTGCTTTTCATCTTCTTTTTCTTCATGTTCAAGTTCCTGATGAAGACGGTTACGATGACGTGGATAGTATCTATGCATCAGGTGAAGACTTTAAGAACATGAAACAGCAGGAAAAGGCTAGAGGGACTCATCTGCTGGAATACTTCGGTGATCCCAAAGAAGTGATATTGAATGAGGTGAAACGGGTTCGTCCAGATTTACTAGTTGTTGGAAGCAGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACGGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTCATGACTATCAAACGCAATGCAGATGAAACTCCAAGGGACCCTGTTGATGACTAG

Protein sequence

>Msa0932830

MGEESTRVMIGVNESSLKGYPHPSISSKGAFDWTVSKIIRNNVSAFHLLFLHVQVPDEDGYDDVDSIYASGEDFKNMKQQEKARGTHLLEYFGDPKEVILNEVKRVRPDLLVVGSRGLGPFQKVFVGTVSEFCWKHAECPVMTIKRNADETPRDPVDD*