Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330160 | sp|P25803|CYSEP_PHAVU | 79.006 | 362 | 74 | 2 | 1 | 360 | 1 | 362 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330160 | A0A072UQV2 | 97.222 | 360 | 10 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1258880 | Msa1330160 | 0.943648 | 8.227103e-103 | -8.615850e-47 |
| Msa1330160 | Msa1330190 | 0.935194 | 1.244596e-96 | -8.615850e-47 |
| Msa1330160 | Msa1369790 | 0.881579 | 2.134351e-70 | -8.615850e-47 |
| Msa1208570 | Msa1330160 | 0.944911 | 8.147133e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330160 | MtrunA17_Chr4g0058081 | 97.222 | 360 | 10 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
| Msa1330160 | MtrunA17_Chr3g0116551 | 74.309 | 362 | 91 | 2 | 1 | 360 | 1 | 362 | 0.0 | 578 |
| Msa1330160 | MtrunA17_Chr4g0041061 | 55.172 | 348 | 145 | 9 | 1 | 342 | 1 | 343 | 2.69e-128 | 371 |
| Msa1330160 | MtrunA17_Chr4g0060251 | 54.467 | 347 | 149 | 7 | 1 | 342 | 1 | 343 | 1.25e-127 | 370 |
| Msa1330160 | MtrunA17_Chr4g0040881 | 58.176 | 318 | 123 | 8 | 30 | 342 | 31 | 343 | 1.56e-126 | 367 |
| Msa1330160 | MtrunA17_Chr5g0405751 | 54.810 | 343 | 144 | 9 | 5 | 342 | 6 | 342 | 2.63e-126 | 366 |
| Msa1330160 | MtrunA17_Chr4g0024411 | 59.425 | 313 | 115 | 8 | 38 | 342 | 33 | 341 | 3.80e-126 | 366 |
| Msa1330160 | MtrunA17_Chr4g0041081 | 57.862 | 318 | 124 | 8 | 30 | 342 | 31 | 343 | 6.43e-126 | 365 |
| Msa1330160 | MtrunA17_Chr3g0144281 | 53.448 | 348 | 150 | 7 | 5 | 345 | 7 | 349 | 1.20e-122 | 357 |
| Msa1330160 | MtrunA17_Chr4g0041481 | 57.372 | 312 | 121 | 8 | 35 | 342 | 35 | 338 | 1.76e-122 | 356 |
| Msa1330160 | MtrunA17_Chr4g0041521 | 56.467 | 317 | 126 | 8 | 30 | 342 | 30 | 338 | 1.83e-122 | 356 |
| Msa1330160 | MtrunA17_Chr2g0315491 | 54.360 | 344 | 141 | 9 | 5 | 342 | 6 | 339 | 5.42e-119 | 347 |
| Msa1330160 | MtrunA17_Chr1g0208261 | 54.434 | 327 | 143 | 6 | 23 | 345 | 73 | 397 | 9.64e-118 | 350 |
| Msa1330160 | MtrunA17_Chr4g0053311 | 49.713 | 348 | 162 | 7 | 1 | 344 | 4 | 342 | 6.17e-116 | 340 |
| Msa1330160 | MtrunA17_Chr4g0040851 | 57.534 | 292 | 114 | 5 | 54 | 343 | 76 | 359 | 1.16e-115 | 340 |
| Msa1330160 | MtrunA17_Chr3g0134231 | 50.716 | 349 | 161 | 8 | 6 | 345 | 17 | 363 | 2.02e-113 | 338 |
| Msa1330160 | MtrunA17_Chr4g0041471 | 49.682 | 314 | 153 | 4 | 33 | 343 | 30 | 341 | 2.04e-108 | 320 |
| Msa1330160 | MtrunA17_Chr2g0325121 | 51.948 | 308 | 136 | 6 | 40 | 344 | 39 | 337 | 4.53e-107 | 317 |
| Msa1330160 | MtrunA17_Chr2g0319991 | 48.378 | 339 | 161 | 7 | 11 | 343 | 13 | 343 | 1.69e-106 | 316 |
| Msa1330160 | MtrunA17_Chr1g0153011 | 49.296 | 355 | 148 | 10 | 1 | 344 | 10 | 343 | 1.14e-105 | 318 |
| Msa1330160 | MtrunA17_Chr7g0248391 | 49.845 | 323 | 142 | 10 | 26 | 343 | 30 | 337 | 4.27e-101 | 302 |
| Msa1330160 | MtrunA17_Chr3g0142071 | 48.875 | 311 | 155 | 4 | 39 | 346 | 49 | 358 | 1.62e-95 | 291 |
| Msa1330160 | MtrunA17_Chr7g0248811 | 47.006 | 334 | 160 | 8 | 13 | 342 | 14 | 334 | 1.64e-94 | 285 |
| Msa1330160 | MtrunA17_Chr2g0283901 | 43.143 | 350 | 179 | 12 | 8 | 345 | 16 | 357 | 1.66e-84 | 264 |
| Msa1330160 | MtrunA17_Chr2g0283671 | 52.752 | 218 | 101 | 2 | 126 | 343 | 12 | 227 | 2.79e-75 | 232 |
| Msa1330160 | MtrunA17_Chr8g0379151 | 40.503 | 358 | 180 | 15 | 6 | 344 | 30 | 373 | 1.46e-69 | 222 |
| Msa1330160 | MtrunA17_Chr2g0311381 | 41.538 | 325 | 163 | 13 | 40 | 345 | 36 | 352 | 2.05e-69 | 221 |
| Msa1330160 | MtrunA17_Chr2g0311471 | 38.873 | 355 | 194 | 13 | 3 | 343 | 1 | 346 | 1.52e-67 | 216 |
| Msa1330160 | MtrunA17_Chr2g0283741 | 36.905 | 336 | 194 | 11 | 30 | 355 | 43 | 370 | 1.45e-65 | 212 |
| Msa1330160 | MtrunA17_Chr0c27g0493921 | 42.525 | 301 | 148 | 12 | 52 | 343 | 64 | 348 | 1.77e-64 | 208 |
| Msa1330160 | MtrunA17_Chr4g0070441 | 42.466 | 292 | 143 | 12 | 52 | 334 | 64 | 339 | 1.13e-60 | 199 |
| Msa1330160 | MtrunA17_Chr1g0155781 | 39.073 | 302 | 149 | 12 | 54 | 335 | 66 | 352 | 3.71e-59 | 195 |
| Msa1330160 | MtrunA17_Chr2g0311391 | 34.121 | 381 | 196 | 15 | 3 | 341 | 1 | 368 | 2.30e-56 | 188 |
| Msa1330160 | MtrunA17_Chr1g0156161 | 41.593 | 226 | 123 | 6 | 120 | 341 | 41 | 261 | 1.05e-55 | 183 |
| Msa1330160 | MtrunA17_Chr4g0035551 | 37.377 | 305 | 159 | 10 | 49 | 335 | 58 | 348 | 2.65e-55 | 185 |
| Msa1330160 | MtrunA17_Chr1g0199131 | 33.819 | 343 | 187 | 11 | 15 | 335 | 34 | 358 | 4.40e-54 | 182 |
| Msa1330160 | MtrunA17_Chr7g0248421 | 52.229 | 157 | 69 | 4 | 152 | 306 | 57 | 209 | 3.98e-45 | 154 |
| Msa1330160 | MtrunA17_Chr7g0248371 | 63.636 | 99 | 35 | 1 | 245 | 343 | 34 | 131 | 8.80e-41 | 140 |
| Msa1330160 | MtrunA17_Chr4g0036731 | 36.644 | 292 | 143 | 13 | 49 | 335 | 58 | 312 | 6.50e-40 | 144 |
| Msa1330160 | MtrunA17_Chr2g0283751 | 36.863 | 255 | 139 | 11 | 30 | 273 | 43 | 286 | 1.71e-39 | 141 |
| Msa1330160 | MtrunA17_Chr4g0036281 | 34.576 | 295 | 149 | 12 | 49 | 335 | 58 | 316 | 1.71e-37 | 137 |
| Msa1330160 | MtrunA17_Chr4g0037291 | 34.576 | 295 | 149 | 12 | 49 | 335 | 99 | 357 | 4.16e-37 | 137 |
| Msa1330160 | MtrunA17_Chr7g0248661 | 69.333 | 75 | 23 | 0 | 269 | 343 | 2 | 76 | 3.26e-33 | 118 |
| Msa1330160 | MtrunA17_Chr2g0283661 | 50.450 | 111 | 54 | 1 | 232 | 342 | 161 | 270 | 1.45e-32 | 122 |
| Msa1330160 | MtrunA17_Chr2g0283661 | 34.615 | 156 | 95 | 5 | 11 | 163 | 5 | 156 | 7.46e-20 | 88.2 |
| Msa1330160 | MtrunA17_Chr2g0311091 | 39.735 | 151 | 79 | 3 | 40 | 178 | 34 | 184 | 1.86e-26 | 103 |
| Msa1330160 | MtrunA17_Chr1g0156771 | 44.762 | 105 | 53 | 3 | 124 | 224 | 51 | 154 | 6.31e-25 | 99.4 |
| Msa1330160 | MtrunA17_Chr7g0271041 | 26.906 | 223 | 137 | 7 | 134 | 335 | 113 | 330 | 1.21e-21 | 94.7 |
| Msa1330160 | MtrunA17_Chr7g0271031 | 27.160 | 243 | 149 | 8 | 126 | 345 | 149 | 386 | 1.62e-21 | 94.7 |
| Msa1330160 | MtrunA17_Chr8g0379671 | 36.090 | 133 | 73 | 6 | 169 | 298 | 23 | 146 | 1.80e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330160 | AT5G50260.1 | 69.252 | 361 | 108 | 2 | 3 | 360 | 1 | 361 | 0.0 | 534 |
| Msa1330160 | AT3G48340.1 | 65.470 | 362 | 120 | 4 | 3 | 360 | 1 | 361 | 7.67e-173 | 485 |
| Msa1330160 | AT3G48350.1 | 62.500 | 360 | 133 | 2 | 3 | 360 | 1 | 360 | 6.46e-168 | 473 |
| Msa1330160 | AT3G48350.2 | 61.733 | 277 | 104 | 2 | 3 | 277 | 1 | 277 | 2.56e-122 | 355 |
| Msa1330160 | AT1G20850.1 | 53.106 | 322 | 146 | 4 | 25 | 344 | 36 | 354 | 3.22e-118 | 346 |
| Msa1330160 | AT5G45890.1 | 49.292 | 353 | 152 | 9 | 3 | 342 | 6 | 344 | 1.58e-116 | 342 |
| Msa1330160 | AT4G35350.1 | 49.856 | 347 | 159 | 6 | 6 | 344 | 14 | 353 | 2.93e-116 | 341 |
| Msa1330160 | AT3G19390.1 | 49.858 | 353 | 164 | 7 | 1 | 349 | 8 | 351 | 2.44e-114 | 340 |
| Msa1330160 | AT5G43060.1 | 51.381 | 362 | 152 | 8 | 1 | 345 | 1 | 355 | 2.89e-114 | 340 |
| Msa1330160 | AT1G47128.1 | 52.681 | 317 | 141 | 4 | 32 | 344 | 42 | 353 | 6.54e-111 | 332 |
| Msa1330160 | AT1G06260.1 | 48.387 | 341 | 166 | 6 | 7 | 344 | 10 | 343 | 2.13e-110 | 326 |
| Msa1330160 | AT4G36880.1 | 49.547 | 331 | 155 | 7 | 32 | 352 | 41 | 369 | 8.40e-109 | 323 |
| Msa1330160 | AT3G19400.1 | 47.246 | 345 | 159 | 10 | 18 | 356 | 26 | 353 | 5.07e-101 | 303 |
| Msa1330160 | AT2G27420.1 | 49.688 | 320 | 152 | 6 | 33 | 343 | 28 | 347 | 1.20e-100 | 301 |
| Msa1330160 | AT4G11310.1 | 45.251 | 358 | 174 | 11 | 4 | 346 | 5 | 355 | 3.24e-99 | 298 |
| Msa1330160 | AT3G49340.1 | 47.785 | 316 | 157 | 6 | 33 | 343 | 28 | 340 | 5.84e-99 | 297 |
| Msa1330160 | AT4G11320.2 | 48.562 | 313 | 151 | 7 | 39 | 346 | 55 | 362 | 1.44e-98 | 297 |
| Msa1330160 | AT4G11320.1 | 48.562 | 313 | 151 | 7 | 39 | 346 | 55 | 362 | 1.44e-98 | 297 |
| Msa1330160 | AT2G34080.1 | 44.857 | 350 | 171 | 7 | 6 | 343 | 5 | 344 | 1.01e-97 | 294 |
| Msa1330160 | AT4G23520.1 | 46.203 | 316 | 159 | 8 | 39 | 349 | 46 | 355 | 7.40e-96 | 290 |
| Msa1330160 | AT1G09850.1 | 48.387 | 310 | 152 | 6 | 38 | 344 | 30 | 334 | 2.89e-93 | 285 |
| Msa1330160 | AT1G29090.1 | 43.966 | 348 | 187 | 6 | 2 | 343 | 9 | 354 | 2.97e-92 | 280 |
| Msa1330160 | AT1G29080.1 | 43.925 | 321 | 169 | 7 | 30 | 343 | 29 | 345 | 1.12e-87 | 268 |
| Msa1330160 | AT4G35350.2 | 47.687 | 281 | 130 | 6 | 7 | 277 | 13 | 286 | 4.09e-83 | 254 |
| Msa1330160 | AT3G43960.1 | 42.151 | 344 | 179 | 12 | 13 | 347 | 18 | 350 | 3.59e-78 | 245 |
| Msa1330160 | AT1G29110.1 | 38.841 | 345 | 185 | 10 | 7 | 343 | 7 | 333 | 3.97e-74 | 233 |
| Msa1330160 | AT3G19400.2 | 45.977 | 261 | 127 | 8 | 18 | 272 | 26 | 278 | 9.38e-68 | 215 |
| Msa1330160 | AT5G60360.1 | 41.333 | 300 | 155 | 11 | 51 | 343 | 71 | 356 | 8.00e-64 | 207 |
| Msa1330160 | AT3G45310.1 | 41.333 | 300 | 155 | 11 | 51 | 343 | 71 | 356 | 1.14e-62 | 204 |
| Msa1330160 | AT5G60360.2 | 41.000 | 300 | 155 | 12 | 51 | 343 | 71 | 355 | 3.19e-61 | 201 |
| Msa1330160 | AT3G45310.2 | 41.000 | 300 | 155 | 12 | 51 | 343 | 71 | 355 | 4.15e-60 | 197 |
| Msa1330160 | AT5G60360.3 | 40.550 | 291 | 152 | 11 | 51 | 334 | 71 | 347 | 5.79e-59 | 195 |
| Msa1330160 | AT4G39090.1 | 38.835 | 309 | 160 | 9 | 44 | 335 | 56 | 352 | 1.74e-58 | 194 |
| Msa1330160 | AT2G21430.1 | 35.613 | 351 | 191 | 12 | 6 | 335 | 13 | 349 | 1.10e-57 | 191 |
| Msa1330160 | AT4G16190.1 | 36.700 | 297 | 163 | 8 | 55 | 335 | 71 | 358 | 3.05e-52 | 177 |
| Msa1330160 | AT3G54940.2 | 35.333 | 300 | 165 | 10 | 54 | 335 | 66 | 354 | 1.03e-49 | 171 |
| Msa1330160 | AT3G54940.3 | 35.185 | 216 | 125 | 6 | 54 | 259 | 66 | 276 | 6.90e-35 | 129 |
| Msa1330160 | AT1G02305.1 | 27.778 | 306 | 175 | 13 | 85 | 360 | 68 | 357 | 4.69e-25 | 104 |
| Msa1330160 | AT4G01610.1 | 25.887 | 282 | 168 | 11 | 85 | 338 | 65 | 333 | 2.73e-21 | 94.0 |
| Msa1330160 | AT2G22160.1 | 50.000 | 96 | 36 | 2 | 60 | 151 | 15 | 102 | 4.29e-21 | 87.4 |
| Msa1330160 | AT1G02300.1 | 28.692 | 237 | 138 | 8 | 147 | 360 | 146 | 374 | 2.00e-20 | 92.0 |
| Msa1330160 | AT4G01610.2 | 25.177 | 282 | 170 | 11 | 85 | 338 | 65 | 333 | 2.22e-19 | 88.6 |
Find 88 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGGCTTATCTAATTTAT+TGG | 0.217778 | 8_4:+49300072 | None:intergenic |
| ACATGACAAATTATGAATTT+AGG | 0.245011 | 8_4:-49300024 | Msa1330160:CDS |
| TTATTCAACTTAAGCTTATA+AGG | 0.250519 | 8_4:+49300055 | None:intergenic |
| AGCTAAGAGCTTTGATTTCC+AGG | 0.263284 | 8_4:-49300233 | Msa1330160:CDS |
| AGGATGCAACGGTGGGTTAA+TGG | 0.279883 | 8_4:-49299457 | Msa1330160:CDS |
| TAACTTGTATAGGTAGTTGC+TGG | 0.293976 | 8_4:-49299587 | Msa1330160:intron |
| CTCAAGATGGAACAAAATAT+TGG | 0.333579 | 8_4:-49298915 | Msa1330160:CDS |
| GAGCATCTATGCTGATTCTA+AGG | 0.335794 | 8_4:-49300002 | Msa1330160:CDS |
| GGGAAGTGAATGGGGAGAAC+AGG | 0.351413 | 8_4:-49298875 | Msa1330160:CDS |
| TAATTACAGGGAGTATTTAC+TGG | 0.363002 | 8_4:-49298991 | Msa1330160:intron |
| TCGATTGATTGGAGGAAGAT+AGG | 0.372632 | 8_4:-49299899 | Msa1330160:CDS |
| ATCATTTATAGCTCATCTTT+CGG | 0.372684 | 8_4:+49298739 | None:intergenic |
| TTCGAGTTCATCAAGCAAAA+TGG | 0.391365 | 8_4:-49299426 | Msa1330160:CDS |
| TCAACAATTGTAGCTGTTGA+AGG | 0.396428 | 8_4:-49299558 | Msa1330160:CDS |
| ATGTTCCTTCTTCGATTGAT+TGG | 0.402034 | 8_4:-49299910 | Msa1330160:CDS |
| TAGACCTTGCTTGTGAGATA+TGG | 0.415919 | 8_4:+49298831 | None:intergenic |
| ATTGGACAGTGAAGAACTCT+TGG | 0.427329 | 8_4:-49298897 | Msa1330160:CDS |
| AAACCAGCAGTGTCAATTGA+TGG | 0.433654 | 8_4:-49299219 | Msa1330160:CDS |
| GAACTCTTGGGGAAGTGAAT+GGG | 0.438030 | 8_4:-49298884 | Msa1330160:CDS |
| TATCTAATTTATTGGTATTG+TGG | 0.443235 | 8_4:+49300080 | None:intergenic |
| GCATCAATAGCTACAGAAAT+CGG | 0.448717 | 8_4:+49299138 | None:intergenic |
| AATGCTGCTTCATTGTTAGC+AGG | 0.455028 | 8_4:+49299183 | None:intergenic |
| GGGGTAGCAATTGTGGGGTA+TGG | 0.459702 | 8_4:-49298943 | Msa1330160:CDS |
| TAAAATCAAAGCTAGGGATA+AGG | 0.466804 | 8_4:+49300261 | None:intergenic |
| AGGTGCTGTCACCGGGGTAA+AGG | 0.468205 | 8_4:-49299879 | Msa1330160:CDS |
| GGAAGATAGGTGCTGTCACC+GGG | 0.470663 | 8_4:-49299886 | Msa1330160:CDS |
| ATTTCTGTAGCTATTGATGC+CGG | 0.473128 | 8_4:-49299135 | Msa1330160:CDS |
| TGGCCATCAATTGACACTGC+TGG | 0.473744 | 8_4:+49299216 | None:intergenic |
| AGCATCAGAGAAAAGTTTGT+GGG | 0.476908 | 8_4:-49300200 | Msa1330160:CDS |
| GAATCATGGGGTAGCAATTG+TGG | 0.479525 | 8_4:-49298950 | Msa1330160:CDS |
| TTGGACAGTGAAGAACTCTT+GGG | 0.479993 | 8_4:-49298896 | Msa1330160:CDS |
| AATCATGGGGTAGCAATTGT+GGG | 0.482862 | 8_4:-49298949 | Msa1330160:CDS |
| TTTCTGTAGCTATTGATGCC+GGG | 0.483109 | 8_4:-49299134 | Msa1330160:CDS |
| AGAACTCTTGGGGAAGTGAA+TGG | 0.483270 | 8_4:-49298885 | Msa1330160:CDS |
| TTATCCTTATGCTGCAAAAG+AGG | 0.485453 | 8_4:-49299385 | Msa1330160:CDS |
| TGTGGGATTTGTACGAGAGA+TGG | 0.486184 | 8_4:-49300183 | Msa1330160:CDS |
| AACTTGTATAGGTAGTTGCT+GGG | 0.493124 | 8_4:-49299586 | Msa1330160:intron |
| CTATTCCTAAAATCAAAGCT+AGG | 0.494841 | 8_4:+49300254 | None:intergenic |
| GGAAGTGAATGGGGAGAACA+GGG | 0.501956 | 8_4:-49298874 | Msa1330160:CDS |
| GGGAACCTGTAATATACAAA+AGG | 0.508036 | 8_4:-49299364 | Msa1330160:intron |
| TTCCTTCTTCGATTGATTGG+AGG | 0.508300 | 8_4:-49299907 | Msa1330160:CDS |
| TTCTGTAGCTATTGATGCCG+GGG | 0.509636 | 8_4:-49299133 | Msa1330160:CDS |
| TATCCTTATGCTGCAAAAGA+GGG | 0.511600 | 8_4:-49299384 | Msa1330160:CDS |
| AGCTACAGAAATCGGTTGGT+TGG | 0.518524 | 8_4:+49299146 | None:intergenic |
| AGGAAGATAGGTGCTGTCAC+CGG | 0.527243 | 8_4:-49299887 | Msa1330160:CDS |
| AACAAGTAAGCTTACCGCAT+TGG | 0.533561 | 8_4:+49299849 | None:intergenic |
| TGTGGTACTGAGCTGAATCA+TGG | 0.537115 | 8_4:-49298964 | Msa1330160:CDS |
| TTCCTCCAATCAATCGAAGA+AGG | 0.537545 | 8_4:+49299905 | None:intergenic |
| CACAAGTTCTTGCTCGGACA+AGG | 0.537976 | 8_4:+49299503 | None:intergenic |
| TATTCCTAAAATCAAAGCTA+GGG | 0.538115 | 8_4:+49300255 | None:intergenic |
| CTGATGCTAAGTCATTCTCC+TGG | 0.541617 | 8_4:+49300215 | None:intergenic |
| GTGGTACTGAGCTGAATCAT+GGG | 0.550981 | 8_4:-49298963 | Msa1330160:CDS |
| TGCGACACTAAAGTGAATCA+AGG | 0.551630 | 8_4:-49299477 | Msa1330160:CDS |
| GGGTATGGAGCAACTCAAGA+TGG | 0.553677 | 8_4:-49298928 | Msa1330160:CDS |
| GGGTTACATTAGAATGCAAA+GGG | 0.553947 | 8_4:-49298854 | Msa1330160:CDS |
| AGGTCTATGTGGCATAGCGA+TGG | 0.556383 | 8_4:-49298815 | Msa1330160:CDS |
| GTCACCGGGGTAAAGGATCA+AGG | 0.557892 | 8_4:-49299872 | Msa1330160:CDS |
| AACTCTTGGGGAAGTGAATG+GGG | 0.569712 | 8_4:-49298883 | Msa1330160:CDS |
| CATTGTCATGTGACAATCCA+CGG | 0.575595 | 8_4:+49299960 | None:intergenic |
| GCAATCCACAAGTTCTTGCT+CGG | 0.579328 | 8_4:+49299497 | None:intergenic |
| ATGCTGCTTCATTGTTAGCA+GGG | 0.581774 | 8_4:+49299184 | None:intergenic |
| TGTTAGCAGGGACATTCTCA+TGG | 0.582058 | 8_4:+49299196 | None:intergenic |
| TAGCATCAGAGAAAAGTTTG+TGG | 0.583867 | 8_4:-49300201 | Msa1330160:CDS |
| AAACTGGAAATCAGATCCCC+CGG | 0.593442 | 8_4:+49299116 | None:intergenic |
| TCTATGTGGCATAGCGATGG+AGG | 0.598279 | 8_4:-49298812 | Msa1330160:CDS |
| GTGAATCAAGGATGCAACGG+TGG | 0.599603 | 8_4:-49299465 | Msa1330160:CDS |
| AGGGTTACATTAGAATGCAA+AGG | 0.601301 | 8_4:-49298855 | Msa1330160:CDS |
| CAATAGCTACAGAAATCGGT+TGG | 0.603005 | 8_4:+49299142 | None:intergenic |
| CGTGGATTGTCACATGACAA+TGG | 0.604341 | 8_4:-49299959 | Msa1330160:CDS |
| CTTGTCCGAGCAAGAACTTG+TGG | 0.608838 | 8_4:-49299502 | Msa1330160:CDS |
| TCTCACAAGCAAGGTCTATG+TGG | 0.620594 | 8_4:-49298826 | Msa1330160:CDS |
| TGAATCAAGGATGCAACGGT+GGG | 0.628142 | 8_4:-49299464 | Msa1330160:CDS |
| TCTGTAGCTATTGATGCCGG+GGG | 0.632927 | 8_4:-49299132 | Msa1330160:CDS |
| TTGGCCTTGATCCTTTACCC+CGG | 0.635267 | 8_4:+49299868 | None:intergenic |
| TCCACATTCTCATACATGAA+CGG | 0.636776 | 8_4:+49299935 | None:intergenic |
| AATCATCATAGAATGTTCCG+TGG | 0.642215 | 8_4:-49299977 | Msa1330160:CDS |
| ACCGTTCATGTATGAGAATG+TGG | 0.645392 | 8_4:-49299936 | Msa1330160:CDS |
| AAAGTGAATCAAGGATGCAA+CGG | 0.646923 | 8_4:-49299468 | Msa1330160:CDS |
| AGGGCCATATCTCACAAGCA+AGG | 0.656245 | 8_4:-49298835 | Msa1330160:CDS |
| TGGACAGTGAAGAACTCTTG+GGG | 0.663115 | 8_4:-49298895 | Msa1330160:CDS |
| ATTGTGGACATGCATAACAT+TGG | 0.668124 | 8_4:+49300096 | None:intergenic |
| ATCATGGGGTAGCAATTGTG+GGG | 0.693047 | 8_4:-49298948 | Msa1330160:CDS |
| CAAGACTTCGAGTAACTGTG+TGG | 0.728098 | 8_4:+49300152 | None:intergenic |
| GGAGTATTTACTGGACACTG+TGG | 0.740210 | 8_4:-49298982 | Msa1330160:CDS |
| TGGTACTGAGCTGAATCATG+GGG | 0.741700 | 8_4:-49298962 | Msa1330160:CDS |
| GAAGATAGGTGCTGTCACCG+GGG | 0.757764 | 8_4:-49299885 | Msa1330160:CDS |
| GTTCATGTATGAGAATGTGG+AGG | 0.769545 | 8_4:-49299933 | Msa1330160:CDS |
| GTAAAGGATCAAGGCCAATG+CGG | 0.813840 | 8_4:-49299863 | Msa1330160:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTAATTATATATT+AGG | + | chr8_4:49299727-49299746 | None:intergenic | 0.0% |
| !! | AAATTTATTAATTATATATT+AGG | + | chr8_4:49299727-49299746 | None:intergenic | 0.0% |
| !!! | AATTTTATTTGATTAACTTA+TGG | - | chr8_4:49299742-49299761 | Msa1330160:intron | 10.0% |
| !!! | ATTTTATTTGATTAACTTAT+GGG | - | chr8_4:49299743-49299762 | Msa1330160:intron | 10.0% |
| !!! | ATATTTTTGTAATTAAAAGT+GGG | + | chr8_4:49300023-49300042 | None:intergenic | 10.0% |
| !!! | TATATTTTTGTAATTAAAAG+TGG | + | chr8_4:49300024-49300043 | None:intergenic | 10.0% |
| !! | AATTACAAAAATATAATTAC+AGG | - | chr8_4:49300029-49300048 | Msa1330160:CDS | 10.0% |
| !! | ATTACAAAAATATAATTACA+GGG | - | chr8_4:49300030-49300049 | Msa1330160:CDS | 10.0% |
| !!! | AATTTTATTTGATTAACTTA+TGG | - | chr8_4:49299742-49299761 | Msa1330160:intron | 10.0% |
| !!! | ATTTTATTTGATTAACTTAT+GGG | - | chr8_4:49299743-49299762 | Msa1330160:intron | 10.0% |
| !!! | ATATTTTTGTAATTAAAAGT+GGG | + | chr8_4:49300023-49300042 | None:intergenic | 10.0% |
| !!! | TATATTTTTGTAATTAAAAG+TGG | + | chr8_4:49300024-49300043 | None:intergenic | 10.0% |
| !! | AATTACAAAAATATAATTAC+AGG | - | chr8_4:49300029-49300048 | Msa1330160:CDS | 10.0% |
| !! | ATTACAAAAATATAATTACA+GGG | - | chr8_4:49300030-49300049 | Msa1330160:CDS | 10.0% |
| !! | TATCTAATTTATTGGTATTG+TGG | + | chr8_4:49298956-49298975 | None:intergenic | 20.0% |
| !! | ATAAGGCTTATCTAATTTAT+TGG | + | chr8_4:49298964-49298983 | None:intergenic | 20.0% |
| !! | TTATTCAACTTAAGCTTATA+AGG | + | chr8_4:49298981-49299000 | None:intergenic | 20.0% |
| !! | ACATGACAAATTATGAATTT+AGG | - | chr8_4:49299009-49299028 | Msa1330160:intron | 20.0% |
| !! | TATCTAATTTATTGGTATTG+TGG | + | chr8_4:49298956-49298975 | None:intergenic | 20.0% |
| !! | ATAAGGCTTATCTAATTTAT+TGG | + | chr8_4:49298964-49298983 | None:intergenic | 20.0% |
| !! | TTATTCAACTTAAGCTTATA+AGG | + | chr8_4:49298981-49299000 | None:intergenic | 20.0% |
| !! | ACATGACAAATTATGAATTT+AGG | - | chr8_4:49299009-49299028 | Msa1330160:intron | 20.0% |
| ! | TATTCCTAAAATCAAAGCTA+GGG | + | chr8_4:49298781-49298800 | None:intergenic | 25.0% |
| ! | ATAATCAAATACAGACTAAG+TGG | + | chr8_4:49299323-49299342 | None:intergenic | 25.0% |
| ! | TCTGTATTTGATTATACGTT+TGG | - | chr8_4:49299328-49299347 | Msa1330160:intron | 25.0% |
| !!! | GAATTGTTTCTAACTTGTAT+AGG | - | chr8_4:49299436-49299455 | Msa1330160:CDS | 25.0% |
| ! | CAAGTGAAAATGTGTTAATT+TGG | + | chr8_4:49299782-49299801 | None:intergenic | 25.0% |
| !! | TTTTCAGATGACTTTTTGAT+TGG | + | chr8_4:49300255-49300274 | None:intergenic | 25.0% |
| ! | TATTCCTAAAATCAAAGCTA+GGG | + | chr8_4:49298781-49298800 | None:intergenic | 25.0% |
| ! | ATAATCAAATACAGACTAAG+TGG | + | chr8_4:49299323-49299342 | None:intergenic | 25.0% |
| ! | TCTGTATTTGATTATACGTT+TGG | - | chr8_4:49299328-49299347 | Msa1330160:intron | 25.0% |
| !!! | GAATTGTTTCTAACTTGTAT+AGG | - | chr8_4:49299436-49299455 | Msa1330160:CDS | 25.0% |
| ! | CAAGTGAAAATGTGTTAATT+TGG | + | chr8_4:49299782-49299801 | None:intergenic | 25.0% |
| !! | TTTTCAGATGACTTTTTGAT+TGG | + | chr8_4:49300255-49300274 | None:intergenic | 25.0% |
| TAAAATCAAAGCTAGGGATA+AGG | + | chr8_4:49298775-49298794 | None:intergenic | 30.0% | |
| !!! | TTATCCCTAGCTTTGATTTT+AGG | - | chr8_4:49298774-49298793 | Msa1330160:CDS | 30.0% |
| CTATTCCTAAAATCAAAGCT+AGG | + | chr8_4:49298782-49298801 | None:intergenic | 30.0% | |
| TTCAAGCGATTTAACTAACA+TGG | + | chr8_4:49299277-49299296 | None:intergenic | 30.0% | |
| !! | GTTCTGAAGTAGAATTGATT+TGG | - | chr8_4:49299407-49299426 | Msa1330160:CDS | 30.0% |
| ! | AACACATTTTCACTTGATGT+AGG | - | chr8_4:49299786-49299805 | Msa1330160:intron | 30.0% |
| !!! | TGATTTCCAGTTTTATTCAG+AGG | - | chr8_4:49299927-49299946 | Msa1330160:CDS | 30.0% |
| ! | GTTTTACCTCTGAATAAAAC+TGG | + | chr8_4:49299936-49299955 | None:intergenic | 30.0% |
| TGTAATTAAAAGTGGGATCA+AGG | + | chr8_4:49300016-49300035 | None:intergenic | 30.0% | |
| !! | TAATTACAGGGAGTATTTAC+TGG | - | chr8_4:49300042-49300061 | Msa1330160:CDS | 30.0% |
| CTCAAGATGGAACAAAATAT+TGG | - | chr8_4:49300118-49300137 | Msa1330160:CDS | 30.0% | |
| TAAAATCAAAGCTAGGGATA+AGG | + | chr8_4:49298775-49298794 | None:intergenic | 30.0% | |
| !!! | TTATCCCTAGCTTTGATTTT+AGG | - | chr8_4:49298774-49298793 | Msa1330160:CDS | 30.0% |
| CTATTCCTAAAATCAAAGCT+AGG | + | chr8_4:49298782-49298801 | None:intergenic | 30.0% | |
| TTCAAGCGATTTAACTAACA+TGG | + | chr8_4:49299277-49299296 | None:intergenic | 30.0% | |
| !! | GTTCTGAAGTAGAATTGATT+TGG | - | chr8_4:49299407-49299426 | Msa1330160:CDS | 30.0% |
| ! | AACACATTTTCACTTGATGT+AGG | - | chr8_4:49299786-49299805 | Msa1330160:intron | 30.0% |
| !!! | TGATTTCCAGTTTTATTCAG+AGG | - | chr8_4:49299927-49299946 | Msa1330160:CDS | 30.0% |
| ! | GTTTTACCTCTGAATAAAAC+TGG | + | chr8_4:49299936-49299955 | None:intergenic | 30.0% |
| TGTAATTAAAAGTGGGATCA+AGG | + | chr8_4:49300016-49300035 | None:intergenic | 30.0% | |
| !! | TAATTACAGGGAGTATTTAC+TGG | - | chr8_4:49300042-49300061 | Msa1330160:CDS | 30.0% |
| CTCAAGATGGAACAAAATAT+TGG | - | chr8_4:49300118-49300137 | Msa1330160:CDS | 30.0% | |
| TAGCATCAGAGAAAAGTTTG+TGG | - | chr8_4:49298832-49298851 | Msa1330160:CDS | 35.0% | |
| AGCATCAGAGAAAAGTTTGT+GGG | - | chr8_4:49298833-49298852 | Msa1330160:CDS | 35.0% | |
| ATTGTGGACATGCATAACAT+TGG | + | chr8_4:49298940-49298959 | None:intergenic | 35.0% | |
| AATCATCATAGAATGTTCCG+TGG | - | chr8_4:49299056-49299075 | Msa1330160:intron | 35.0% | |
| TCCACATTCTCATACATGAA+CGG | + | chr8_4:49299101-49299120 | None:intergenic | 35.0% | |
| ATGTTCCTTCTTCGATTGAT+TGG | - | chr8_4:49299123-49299142 | Msa1330160:CDS | 35.0% | |
| GTTTGGATCCAAAATTGATC+TGG | - | chr8_4:49299345-49299364 | Msa1330160:intron | 35.0% | |
| ! | TAACTTGTATAGGTAGTTGC+TGG | - | chr8_4:49299446-49299465 | Msa1330160:CDS | 35.0% |
| AACTTGTATAGGTAGTTGCT+GGG | - | chr8_4:49299447-49299466 | Msa1330160:CDS | 35.0% | |
| TCAACAATTGTAGCTGTTGA+AGG | - | chr8_4:49299475-49299494 | Msa1330160:CDS | 35.0% | |
| !! | CTAGTTTTCGTGTCTTGATT+TGG | + | chr8_4:49299507-49299526 | None:intergenic | 35.0% |
| AAAGTGAATCAAGGATGCAA+CGG | - | chr8_4:49299565-49299584 | Msa1330160:CDS | 35.0% | |
| ! | TTCGAGTTCATCAAGCAAAA+TGG | - | chr8_4:49299607-49299626 | Msa1330160:intron | 35.0% |
| TTATCCTTATGCTGCAAAAG+AGG | - | chr8_4:49299648-49299667 | Msa1330160:intron | 35.0% | |
| TATCCTTATGCTGCAAAAGA+GGG | - | chr8_4:49299649-49299668 | Msa1330160:intron | 35.0% | |
| GGGAACCTGTAATATACAAA+AGG | - | chr8_4:49299669-49299688 | Msa1330160:intron | 35.0% | |
| ! | GTGCACCTTTTGTATATTAC+AGG | + | chr8_4:49299677-49299696 | None:intergenic | 35.0% |
| GCATCAATAGCTACAGAAAT+CGG | + | chr8_4:49299898-49299917 | None:intergenic | 35.0% | |
| ATTTCTGTAGCTATTGATGC+CGG | - | chr8_4:49299898-49299917 | Msa1330160:CDS | 35.0% | |
| AGGGTTACATTAGAATGCAA+AGG | - | chr8_4:49300178-49300197 | Msa1330160:CDS | 35.0% | |
| GGGTTACATTAGAATGCAAA+GGG | - | chr8_4:49300179-49300198 | Msa1330160:CDS | 35.0% | |
| ! | TCGGAAGTGAACTTTTTGTT+GGG | + | chr8_4:49300278-49300297 | None:intergenic | 35.0% |
| ! | TTCGGAAGTGAACTTTTTGT+TGG | + | chr8_4:49300279-49300298 | None:intergenic | 35.0% |
| TAGCATCAGAGAAAAGTTTG+TGG | - | chr8_4:49298832-49298851 | Msa1330160:CDS | 35.0% | |
| AGCATCAGAGAAAAGTTTGT+GGG | - | chr8_4:49298833-49298852 | Msa1330160:CDS | 35.0% | |
| ATTGTGGACATGCATAACAT+TGG | + | chr8_4:49298940-49298959 | None:intergenic | 35.0% | |
| AATCATCATAGAATGTTCCG+TGG | - | chr8_4:49299056-49299075 | Msa1330160:intron | 35.0% | |
| TCCACATTCTCATACATGAA+CGG | + | chr8_4:49299101-49299120 | None:intergenic | 35.0% | |
| ATGTTCCTTCTTCGATTGAT+TGG | - | chr8_4:49299123-49299142 | Msa1330160:CDS | 35.0% | |
| GTTTGGATCCAAAATTGATC+TGG | - | chr8_4:49299345-49299364 | Msa1330160:intron | 35.0% | |
| ! | TAACTTGTATAGGTAGTTGC+TGG | - | chr8_4:49299446-49299465 | Msa1330160:CDS | 35.0% |
| AACTTGTATAGGTAGTTGCT+GGG | - | chr8_4:49299447-49299466 | Msa1330160:CDS | 35.0% | |
| TCAACAATTGTAGCTGTTGA+AGG | - | chr8_4:49299475-49299494 | Msa1330160:CDS | 35.0% | |
| !! | CTAGTTTTCGTGTCTTGATT+TGG | + | chr8_4:49299507-49299526 | None:intergenic | 35.0% |
| AAAGTGAATCAAGGATGCAA+CGG | - | chr8_4:49299565-49299584 | Msa1330160:CDS | 35.0% | |
| ! | TTCGAGTTCATCAAGCAAAA+TGG | - | chr8_4:49299607-49299626 | Msa1330160:intron | 35.0% |
| TTATCCTTATGCTGCAAAAG+AGG | - | chr8_4:49299648-49299667 | Msa1330160:intron | 35.0% | |
| TATCCTTATGCTGCAAAAGA+GGG | - | chr8_4:49299649-49299668 | Msa1330160:intron | 35.0% | |
| GGGAACCTGTAATATACAAA+AGG | - | chr8_4:49299669-49299688 | Msa1330160:intron | 35.0% | |
| ! | GTGCACCTTTTGTATATTAC+AGG | + | chr8_4:49299677-49299696 | None:intergenic | 35.0% |
| GCATCAATAGCTACAGAAAT+CGG | + | chr8_4:49299898-49299917 | None:intergenic | 35.0% | |
| ATTTCTGTAGCTATTGATGC+CGG | - | chr8_4:49299898-49299917 | Msa1330160:CDS | 35.0% | |
| AGGGTTACATTAGAATGCAA+AGG | - | chr8_4:49300178-49300197 | Msa1330160:CDS | 35.0% | |
| GGGTTACATTAGAATGCAAA+GGG | - | chr8_4:49300179-49300198 | Msa1330160:CDS | 35.0% | |
| ! | TCGGAAGTGAACTTTTTGTT+GGG | + | chr8_4:49300278-49300297 | None:intergenic | 35.0% |
| ! | TTCGGAAGTGAACTTTTTGT+TGG | + | chr8_4:49300279-49300298 | None:intergenic | 35.0% |
| ! | AGCTAAGAGCTTTGATTTCC+AGG | - | chr8_4:49298800-49298819 | Msa1330160:CDS | 40.0% |
| !! | GAGCATCTATGCTGATTCTA+AGG | - | chr8_4:49299031-49299050 | Msa1330160:intron | 40.0% |
| CATTGTCATGTGACAATCCA+CGG | + | chr8_4:49299076-49299095 | None:intergenic | 40.0% | |
| ACCGTTCATGTATGAGAATG+TGG | - | chr8_4:49299097-49299116 | Msa1330160:intron | 40.0% | |
| GTTCATGTATGAGAATGTGG+AGG | - | chr8_4:49299100-49299119 | Msa1330160:intron | 40.0% | |
| TTCCTTCTTCGATTGATTGG+AGG | - | chr8_4:49299126-49299145 | Msa1330160:CDS | 40.0% | |
| TTCCTCCAATCAATCGAAGA+AGG | + | chr8_4:49299131-49299150 | None:intergenic | 40.0% | |
| TCGATTGATTGGAGGAAGAT+AGG | - | chr8_4:49299134-49299153 | Msa1330160:CDS | 40.0% | |
| AACAAGTAAGCTTACCGCAT+TGG | + | chr8_4:49299187-49299206 | None:intergenic | 40.0% | |
| ! | CCAGTTCTCCAGATCAATTT+TGG | + | chr8_4:49299356-49299375 | None:intergenic | 40.0% |
| CCAAAATTGATCTGGAGAAC+TGG | - | chr8_4:49299353-49299372 | Msa1330160:intron | 40.0% | |
| TGCGACACTAAAGTGAATCA+AGG | - | chr8_4:49299556-49299575 | Msa1330160:CDS | 40.0% | |
| AAACCAGCAGTGTCAATTGA+TGG | - | chr8_4:49299814-49299833 | Msa1330160:intron | 40.0% | |
| ! | ATGCTGCTTCATTGTTAGCA+GGG | + | chr8_4:49299852-49299871 | None:intergenic | 40.0% |
| ! | AATGCTGCTTCATTGTTAGC+AGG | + | chr8_4:49299853-49299872 | None:intergenic | 40.0% |
| CAATAGCTACAGAAATCGGT+TGG | + | chr8_4:49299894-49299913 | None:intergenic | 40.0% | |
| TTTCTGTAGCTATTGATGCC+GGG | - | chr8_4:49299899-49299918 | Msa1330160:CDS | 40.0% | |
| AATCATGGGGTAGCAATTGT+GGG | - | chr8_4:49300084-49300103 | Msa1330160:CDS | 40.0% | |
| ATTGGACAGTGAAGAACTCT+TGG | - | chr8_4:49300136-49300155 | Msa1330160:CDS | 40.0% | |
| TTGGACAGTGAAGAACTCTT+GGG | - | chr8_4:49300137-49300156 | Msa1330160:CDS | 40.0% | |
| TAGACCTTGCTTGTGAGATA+TGG | + | chr8_4:49300205-49300224 | None:intergenic | 40.0% | |
| ! | AGCTAAGAGCTTTGATTTCC+AGG | - | chr8_4:49298800-49298819 | Msa1330160:CDS | 40.0% |
| !! | GAGCATCTATGCTGATTCTA+AGG | - | chr8_4:49299031-49299050 | Msa1330160:intron | 40.0% |
| CATTGTCATGTGACAATCCA+CGG | + | chr8_4:49299076-49299095 | None:intergenic | 40.0% | |
| ACCGTTCATGTATGAGAATG+TGG | - | chr8_4:49299097-49299116 | Msa1330160:intron | 40.0% | |
| GTTCATGTATGAGAATGTGG+AGG | - | chr8_4:49299100-49299119 | Msa1330160:intron | 40.0% | |
| TTCCTTCTTCGATTGATTGG+AGG | - | chr8_4:49299126-49299145 | Msa1330160:CDS | 40.0% | |
| TTCCTCCAATCAATCGAAGA+AGG | + | chr8_4:49299131-49299150 | None:intergenic | 40.0% | |
| TCGATTGATTGGAGGAAGAT+AGG | - | chr8_4:49299134-49299153 | Msa1330160:CDS | 40.0% | |
| AACAAGTAAGCTTACCGCAT+TGG | + | chr8_4:49299187-49299206 | None:intergenic | 40.0% | |
| ! | CCAGTTCTCCAGATCAATTT+TGG | + | chr8_4:49299356-49299375 | None:intergenic | 40.0% |
| CCAAAATTGATCTGGAGAAC+TGG | - | chr8_4:49299353-49299372 | Msa1330160:intron | 40.0% | |
| TGCGACACTAAAGTGAATCA+AGG | - | chr8_4:49299556-49299575 | Msa1330160:CDS | 40.0% | |
| AAACCAGCAGTGTCAATTGA+TGG | - | chr8_4:49299814-49299833 | Msa1330160:intron | 40.0% | |
| ! | ATGCTGCTTCATTGTTAGCA+GGG | + | chr8_4:49299852-49299871 | None:intergenic | 40.0% |
| ! | AATGCTGCTTCATTGTTAGC+AGG | + | chr8_4:49299853-49299872 | None:intergenic | 40.0% |
| CAATAGCTACAGAAATCGGT+TGG | + | chr8_4:49299894-49299913 | None:intergenic | 40.0% | |
| TTTCTGTAGCTATTGATGCC+GGG | - | chr8_4:49299899-49299918 | Msa1330160:CDS | 40.0% | |
| AATCATGGGGTAGCAATTGT+GGG | - | chr8_4:49300084-49300103 | Msa1330160:CDS | 40.0% | |
| ATTGGACAGTGAAGAACTCT+TGG | - | chr8_4:49300136-49300155 | Msa1330160:CDS | 40.0% | |
| TTGGACAGTGAAGAACTCTT+GGG | - | chr8_4:49300137-49300156 | Msa1330160:CDS | 40.0% | |
| TAGACCTTGCTTGTGAGATA+TGG | + | chr8_4:49300205-49300224 | None:intergenic | 40.0% | |
| CTGATGCTAAGTCATTCTCC+TGG | + | chr8_4:49298821-49298840 | None:intergenic | 45.0% | |
| TGTGGGATTTGTACGAGAGA+TGG | - | chr8_4:49298850-49298869 | Msa1330160:CDS | 45.0% | |
| CAAGACTTCGAGTAACTGTG+TGG | + | chr8_4:49298884-49298903 | None:intergenic | 45.0% | |
| ! | CGTGGATTGTCACATGACAA+TGG | - | chr8_4:49299074-49299093 | Msa1330160:intron | 45.0% |
| GTAAAGGATCAAGGCCAATG+CGG | - | chr8_4:49299170-49299189 | Msa1330160:CDS | 45.0% | |
| GCAATCCACAAGTTCTTGCT+CGG | + | chr8_4:49299539-49299558 | None:intergenic | 45.0% | |
| TGAATCAAGGATGCAACGGT+GGG | - | chr8_4:49299569-49299588 | Msa1330160:CDS | 45.0% | |
| ! | GTTCCCTCTTTTGCAGCATA+AGG | + | chr8_4:49299655-49299674 | None:intergenic | 45.0% |
| TGTTAGCAGGGACATTCTCA+TGG | + | chr8_4:49299840-49299859 | None:intergenic | 45.0% | |
| AGCTACAGAAATCGGTTGGT+TGG | + | chr8_4:49299890-49299909 | None:intergenic | 45.0% | |
| TTCTGTAGCTATTGATGCCG+GGG | - | chr8_4:49299900-49299919 | Msa1330160:CDS | 45.0% | |
| AAACTGGAAATCAGATCCCC+CGG | + | chr8_4:49299920-49299939 | None:intergenic | 45.0% | |
| ! | GGAGTATTTACTGGACACTG+TGG | - | chr8_4:49300051-49300070 | Msa1330160:CDS | 45.0% |
| ! | TGTGGTACTGAGCTGAATCA+TGG | - | chr8_4:49300069-49300088 | Msa1330160:CDS | 45.0% |
| ! | GTGGTACTGAGCTGAATCAT+GGG | - | chr8_4:49300070-49300089 | Msa1330160:CDS | 45.0% |
| ! | TGGTACTGAGCTGAATCATG+GGG | - | chr8_4:49300071-49300090 | Msa1330160:CDS | 45.0% |
| GAATCATGGGGTAGCAATTG+TGG | - | chr8_4:49300083-49300102 | Msa1330160:CDS | 45.0% | |
| ATCATGGGGTAGCAATTGTG+GGG | - | chr8_4:49300085-49300104 | Msa1330160:CDS | 45.0% | |
| TGGACAGTGAAGAACTCTTG+GGG | - | chr8_4:49300138-49300157 | Msa1330160:CDS | 45.0% | |
| AGAACTCTTGGGGAAGTGAA+TGG | - | chr8_4:49300148-49300167 | Msa1330160:CDS | 45.0% | |
| GAACTCTTGGGGAAGTGAAT+GGG | - | chr8_4:49300149-49300168 | Msa1330160:CDS | 45.0% | |
| AACTCTTGGGGAAGTGAATG+GGG | - | chr8_4:49300150-49300169 | Msa1330160:CDS | 45.0% | |
| TCTCACAAGCAAGGTCTATG+TGG | - | chr8_4:49300207-49300226 | Msa1330160:CDS | 45.0% | |
| CTGATGCTAAGTCATTCTCC+TGG | + | chr8_4:49298821-49298840 | None:intergenic | 45.0% | |
| TGTGGGATTTGTACGAGAGA+TGG | - | chr8_4:49298850-49298869 | Msa1330160:CDS | 45.0% | |
| CAAGACTTCGAGTAACTGTG+TGG | + | chr8_4:49298884-49298903 | None:intergenic | 45.0% | |
| ! | CGTGGATTGTCACATGACAA+TGG | - | chr8_4:49299074-49299093 | Msa1330160:intron | 45.0% |
| GTAAAGGATCAAGGCCAATG+CGG | - | chr8_4:49299170-49299189 | Msa1330160:CDS | 45.0% | |
| GCAATCCACAAGTTCTTGCT+CGG | + | chr8_4:49299539-49299558 | None:intergenic | 45.0% | |
| TGAATCAAGGATGCAACGGT+GGG | - | chr8_4:49299569-49299588 | Msa1330160:CDS | 45.0% | |
| ! | GTTCCCTCTTTTGCAGCATA+AGG | + | chr8_4:49299655-49299674 | None:intergenic | 45.0% |
| TGTTAGCAGGGACATTCTCA+TGG | + | chr8_4:49299840-49299859 | None:intergenic | 45.0% | |
| AGCTACAGAAATCGGTTGGT+TGG | + | chr8_4:49299890-49299909 | None:intergenic | 45.0% | |
| TTCTGTAGCTATTGATGCCG+GGG | - | chr8_4:49299900-49299919 | Msa1330160:CDS | 45.0% | |
| AAACTGGAAATCAGATCCCC+CGG | + | chr8_4:49299920-49299939 | None:intergenic | 45.0% | |
| ! | GGAGTATTTACTGGACACTG+TGG | - | chr8_4:49300051-49300070 | Msa1330160:CDS | 45.0% |
| ! | TGTGGTACTGAGCTGAATCA+TGG | - | chr8_4:49300069-49300088 | Msa1330160:CDS | 45.0% |
| ! | GTGGTACTGAGCTGAATCAT+GGG | - | chr8_4:49300070-49300089 | Msa1330160:CDS | 45.0% |
| ! | TGGTACTGAGCTGAATCATG+GGG | - | chr8_4:49300071-49300090 | Msa1330160:CDS | 45.0% |
| GAATCATGGGGTAGCAATTG+TGG | - | chr8_4:49300083-49300102 | Msa1330160:CDS | 45.0% | |
| ATCATGGGGTAGCAATTGTG+GGG | - | chr8_4:49300085-49300104 | Msa1330160:CDS | 45.0% | |
| TGGACAGTGAAGAACTCTTG+GGG | - | chr8_4:49300138-49300157 | Msa1330160:CDS | 45.0% | |
| AGAACTCTTGGGGAAGTGAA+TGG | - | chr8_4:49300148-49300167 | Msa1330160:CDS | 45.0% | |
| GAACTCTTGGGGAAGTGAAT+GGG | - | chr8_4:49300149-49300168 | Msa1330160:CDS | 45.0% | |
| AACTCTTGGGGAAGTGAATG+GGG | - | chr8_4:49300150-49300169 | Msa1330160:CDS | 45.0% | |
| TCTCACAAGCAAGGTCTATG+TGG | - | chr8_4:49300207-49300226 | Msa1330160:CDS | 45.0% | |
| ! | AGGAAGATAGGTGCTGTCAC+CGG | - | chr8_4:49299146-49299165 | Msa1330160:CDS | 50.0% |
| !! | TTGGCCTTGATCCTTTACCC+CGG | + | chr8_4:49299168-49299187 | None:intergenic | 50.0% |
| CACAAGTTCTTGCTCGGACA+AGG | + | chr8_4:49299533-49299552 | None:intergenic | 50.0% | |
| CTTGTCCGAGCAAGAACTTG+TGG | - | chr8_4:49299531-49299550 | Msa1330160:CDS | 50.0% | |
| GTGAATCAAGGATGCAACGG+TGG | - | chr8_4:49299568-49299587 | Msa1330160:CDS | 50.0% | |
| !! | AGGATGCAACGGTGGGTTAA+TGG | - | chr8_4:49299576-49299595 | Msa1330160:CDS | 50.0% |
| TGGCCATCAATTGACACTGC+TGG | + | chr8_4:49299820-49299839 | None:intergenic | 50.0% | |
| TCTGTAGCTATTGATGCCGG+GGG | - | chr8_4:49299901-49299920 | Msa1330160:CDS | 50.0% | |
| GGGTATGGAGCAACTCAAGA+TGG | - | chr8_4:49300105-49300124 | Msa1330160:CDS | 50.0% | |
| GGAAGTGAATGGGGAGAACA+GGG | - | chr8_4:49300159-49300178 | Msa1330160:CDS | 50.0% | |
| AGGGCCATATCTCACAAGCA+AGG | - | chr8_4:49300198-49300217 | Msa1330160:CDS | 50.0% | |
| AGGTCTATGTGGCATAGCGA+TGG | - | chr8_4:49300218-49300237 | Msa1330160:CDS | 50.0% | |
| TCTATGTGGCATAGCGATGG+AGG | - | chr8_4:49300221-49300240 | Msa1330160:CDS | 50.0% | |
| ! | AGGAAGATAGGTGCTGTCAC+CGG | - | chr8_4:49299146-49299165 | Msa1330160:CDS | 50.0% |
| !! | TTGGCCTTGATCCTTTACCC+CGG | + | chr8_4:49299168-49299187 | None:intergenic | 50.0% |
| CACAAGTTCTTGCTCGGACA+AGG | + | chr8_4:49299533-49299552 | None:intergenic | 50.0% | |
| CTTGTCCGAGCAAGAACTTG+TGG | - | chr8_4:49299531-49299550 | Msa1330160:CDS | 50.0% | |
| GTGAATCAAGGATGCAACGG+TGG | - | chr8_4:49299568-49299587 | Msa1330160:CDS | 50.0% | |
| !! | AGGATGCAACGGTGGGTTAA+TGG | - | chr8_4:49299576-49299595 | Msa1330160:CDS | 50.0% |
| TGGCCATCAATTGACACTGC+TGG | + | chr8_4:49299820-49299839 | None:intergenic | 50.0% | |
| TCTGTAGCTATTGATGCCGG+GGG | - | chr8_4:49299901-49299920 | Msa1330160:CDS | 50.0% | |
| GGGTATGGAGCAACTCAAGA+TGG | - | chr8_4:49300105-49300124 | Msa1330160:CDS | 50.0% | |
| GGAAGTGAATGGGGAGAACA+GGG | - | chr8_4:49300159-49300178 | Msa1330160:CDS | 50.0% | |
| AGGGCCATATCTCACAAGCA+AGG | - | chr8_4:49300198-49300217 | Msa1330160:CDS | 50.0% | |
| AGGTCTATGTGGCATAGCGA+TGG | - | chr8_4:49300218-49300237 | Msa1330160:CDS | 50.0% | |
| TCTATGTGGCATAGCGATGG+AGG | - | chr8_4:49300221-49300240 | Msa1330160:CDS | 50.0% | |
| ! | GGAAGATAGGTGCTGTCACC+GGG | - | chr8_4:49299147-49299166 | Msa1330160:CDS | 55.0% |
| ! | GAAGATAGGTGCTGTCACCG+GGG | - | chr8_4:49299148-49299167 | Msa1330160:CDS | 55.0% |
| GTCACCGGGGTAAAGGATCA+AGG | - | chr8_4:49299161-49299180 | Msa1330160:CDS | 55.0% | |
| GGGGTAGCAATTGTGGGGTA+TGG | - | chr8_4:49300090-49300109 | Msa1330160:CDS | 55.0% | |
| GGGAAGTGAATGGGGAGAAC+AGG | - | chr8_4:49300158-49300177 | Msa1330160:CDS | 55.0% | |
| ! | GGAAGATAGGTGCTGTCACC+GGG | - | chr8_4:49299147-49299166 | Msa1330160:CDS | 55.0% |
| ! | GAAGATAGGTGCTGTCACCG+GGG | - | chr8_4:49299148-49299167 | Msa1330160:CDS | 55.0% |
| GTCACCGGGGTAAAGGATCA+AGG | - | chr8_4:49299161-49299180 | Msa1330160:CDS | 55.0% | |
| GGGGTAGCAATTGTGGGGTA+TGG | - | chr8_4:49300090-49300109 | Msa1330160:CDS | 55.0% | |
| GGGAAGTGAATGGGGAGAAC+AGG | - | chr8_4:49300158-49300177 | Msa1330160:CDS | 55.0% | |
| ! | AGGTGCTGTCACCGGGGTAA+AGG | - | chr8_4:49299154-49299173 | Msa1330160:CDS | 60.0% |
| ! | AGGTGCTGTCACCGGGGTAA+AGG | - | chr8_4:49299154-49299173 | Msa1330160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49298744 | 49300311 | 49298744 | ID=Msa1330160;Name=Msa1330160 |
| chr8_4 | mRNA | 49298744 | 49300311 | 49298744 | ID=Msa1330160-mRNA-1;Parent=Msa1330160;Name=Msa1330160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.5|1|1|1|4|0|360 |
| chr8_4 | exon | 49299864 | 49300311 | 49299864 | ID=Msa1330160-mRNA-1:exon:14263;Parent=Msa1330160-mRNA-1 |
| chr8_4 | exon | 49299365 | 49299597 | 49299365 | ID=Msa1330160-mRNA-1:exon:14262;Parent=Msa1330160-mRNA-1 |
| chr8_4 | exon | 49299107 | 49299247 | 49299107 | ID=Msa1330160-mRNA-1:exon:14261;Parent=Msa1330160-mRNA-1 |
| chr8_4 | exon | 49298744 | 49299004 | 49298744 | ID=Msa1330160-mRNA-1:exon:14260;Parent=Msa1330160-mRNA-1 |
| chr8_4 | CDS | 49299864 | 49300311 | 49299864 | ID=Msa1330160-mRNA-1:cds;Parent=Msa1330160-mRNA-1 |
| chr8_4 | CDS | 49299365 | 49299597 | 49299365 | ID=Msa1330160-mRNA-1:cds;Parent=Msa1330160-mRNA-1 |
| chr8_4 | CDS | 49299107 | 49299247 | 49299107 | ID=Msa1330160-mRNA-1:cds;Parent=Msa1330160-mRNA-1 |
| chr8_4 | CDS | 49298744 | 49299004 | 49298744 | ID=Msa1330160-mRNA-1:cds;Parent=Msa1330160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
