Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1369790 | XP_013457705.1 | 96.667 | 360 | 12 | 0 | 1 | 360 | 1 | 360 | 0.0 | 735 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1369790 | sp|P25803|CYSEP_PHAVU | 78.453 | 362 | 76 | 2 | 1 | 360 | 1 | 362 | 0.0 | 592 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1369790 | A0A072UQV2 | 96.667 | 360 | 12 | 0 | 1 | 360 | 1 | 360 | 0.0 | 735 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1258880 | Msa1369790 | 0.943121 | 2.126663e-102 | -8.615850e-47 |
Msa1330160 | Msa1369790 | 0.881579 | 2.134351e-70 | -8.615850e-47 |
Msa1330190 | Msa1369790 | 0.940069 | 4.377961e-100 | -8.615850e-47 |
Msa1208570 | Msa1369790 | 0.949019 | 2.960864e-107 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1369790 | MtrunA17_Chr4g0058081 | 96.667 | 360 | 12 | 0 | 1 | 360 | 1 | 360 | 0.0 | 735 |
Msa1369790 | MtrunA17_Chr3g0116551 | 73.757 | 362 | 93 | 2 | 1 | 360 | 1 | 362 | 0.0 | 574 |
Msa1369790 | MtrunA17_Chr4g0041061 | 54.598 | 348 | 147 | 9 | 1 | 342 | 1 | 343 | 1.08e-126 | 367 |
Msa1369790 | MtrunA17_Chr4g0060251 | 53.890 | 347 | 151 | 7 | 1 | 342 | 1 | 343 | 7.58e-126 | 365 |
Msa1369790 | MtrunA17_Chr4g0040881 | 57.547 | 318 | 125 | 8 | 30 | 342 | 31 | 343 | 6.78e-125 | 363 |
Msa1369790 | MtrunA17_Chr5g0405751 | 54.227 | 343 | 146 | 9 | 5 | 342 | 6 | 342 | 1.30e-124 | 362 |
Msa1369790 | MtrunA17_Chr4g0024411 | 58.786 | 313 | 117 | 8 | 38 | 342 | 33 | 341 | 1.97e-124 | 361 |
Msa1369790 | MtrunA17_Chr4g0041081 | 57.233 | 318 | 126 | 8 | 30 | 342 | 31 | 343 | 2.77e-124 | 361 |
Msa1369790 | MtrunA17_Chr3g0144281 | 52.874 | 348 | 152 | 7 | 5 | 345 | 7 | 349 | 5.03e-121 | 353 |
Msa1369790 | MtrunA17_Chr4g0041521 | 55.836 | 317 | 128 | 8 | 30 | 342 | 30 | 338 | 6.07e-121 | 352 |
Msa1369790 | MtrunA17_Chr4g0041481 | 56.731 | 312 | 123 | 8 | 35 | 342 | 35 | 338 | 8.33e-121 | 352 |
Msa1369790 | MtrunA17_Chr2g0315491 | 53.779 | 344 | 143 | 9 | 5 | 342 | 6 | 339 | 2.92e-117 | 343 |
Msa1369790 | MtrunA17_Chr1g0208261 | 53.823 | 327 | 145 | 6 | 23 | 345 | 73 | 397 | 4.62e-116 | 346 |
Msa1369790 | MtrunA17_Chr4g0053311 | 49.138 | 348 | 164 | 7 | 1 | 344 | 4 | 342 | 2.82e-114 | 336 |
Msa1369790 | MtrunA17_Chr4g0040851 | 56.849 | 292 | 116 | 5 | 54 | 343 | 76 | 359 | 4.76e-114 | 335 |
Msa1369790 | MtrunA17_Chr3g0134231 | 50.143 | 349 | 163 | 8 | 6 | 345 | 17 | 363 | 1.01e-111 | 333 |
Msa1369790 | MtrunA17_Chr4g0041471 | 49.363 | 314 | 154 | 4 | 33 | 343 | 30 | 341 | 1.13e-107 | 319 |
Msa1369790 | MtrunA17_Chr2g0319991 | 48.378 | 339 | 161 | 7 | 11 | 343 | 13 | 343 | 5.54e-106 | 315 |
Msa1369790 | MtrunA17_Chr2g0325121 | 51.623 | 308 | 137 | 6 | 40 | 344 | 39 | 337 | 7.18e-106 | 314 |
Msa1369790 | MtrunA17_Chr1g0153011 | 48.732 | 355 | 150 | 10 | 1 | 344 | 10 | 343 | 5.70e-104 | 313 |
Msa1369790 | MtrunA17_Chr7g0248391 | 49.226 | 323 | 144 | 10 | 26 | 343 | 30 | 337 | 1.52e-99 | 298 |
Msa1369790 | MtrunA17_Chr7g0248811 | 46.707 | 334 | 161 | 8 | 13 | 342 | 14 | 334 | 6.10e-94 | 283 |
Msa1369790 | MtrunA17_Chr3g0142071 | 48.232 | 311 | 157 | 4 | 39 | 346 | 49 | 358 | 8.25e-94 | 287 |
Msa1369790 | MtrunA17_Chr2g0283901 | 42.571 | 350 | 181 | 12 | 8 | 345 | 16 | 357 | 9.40e-83 | 260 |
Msa1369790 | MtrunA17_Chr2g0283671 | 51.835 | 218 | 103 | 2 | 126 | 343 | 12 | 227 | 1.01e-73 | 228 |
Msa1369790 | MtrunA17_Chr8g0379151 | 40.223 | 358 | 181 | 15 | 6 | 344 | 30 | 373 | 1.37e-68 | 220 |
Msa1369790 | MtrunA17_Chr2g0311381 | 40.923 | 325 | 165 | 13 | 40 | 345 | 36 | 352 | 2.51e-68 | 218 |
Msa1369790 | MtrunA17_Chr2g0311471 | 38.592 | 355 | 195 | 13 | 3 | 343 | 1 | 346 | 8.92e-67 | 214 |
Msa1369790 | MtrunA17_Chr2g0283741 | 36.607 | 336 | 195 | 11 | 30 | 355 | 43 | 370 | 1.17e-64 | 209 |
Msa1369790 | MtrunA17_Chr0c27g0493921 | 42.193 | 301 | 149 | 12 | 52 | 343 | 64 | 348 | 1.07e-63 | 206 |
Msa1369790 | MtrunA17_Chr4g0070441 | 42.466 | 292 | 143 | 12 | 52 | 334 | 64 | 339 | 1.41e-60 | 198 |
Msa1369790 | MtrunA17_Chr1g0155781 | 38.742 | 302 | 150 | 12 | 54 | 335 | 66 | 352 | 2.30e-58 | 193 |
Msa1369790 | MtrunA17_Chr2g0311391 | 33.596 | 381 | 198 | 15 | 3 | 341 | 1 | 368 | 7.75e-55 | 184 |
Msa1369790 | MtrunA17_Chr4g0035551 | 37.049 | 305 | 160 | 10 | 49 | 335 | 58 | 348 | 1.63e-54 | 183 |
Msa1369790 | MtrunA17_Chr1g0156161 | 40.708 | 226 | 125 | 6 | 120 | 341 | 41 | 261 | 3.92e-54 | 179 |
Msa1369790 | MtrunA17_Chr1g0199131 | 33.528 | 343 | 188 | 11 | 15 | 335 | 34 | 358 | 2.58e-53 | 180 |
Msa1369790 | MtrunA17_Chr7g0248421 | 52.229 | 157 | 69 | 4 | 152 | 306 | 57 | 209 | 6.04e-45 | 153 |
Msa1369790 | MtrunA17_Chr2g0283751 | 37.255 | 255 | 138 | 11 | 30 | 273 | 43 | 286 | 4.18e-40 | 143 |
Msa1369790 | MtrunA17_Chr7g0248371 | 62.626 | 99 | 36 | 1 | 245 | 343 | 34 | 131 | 9.72e-40 | 138 |
Msa1369790 | MtrunA17_Chr4g0036731 | 36.301 | 292 | 144 | 13 | 49 | 335 | 58 | 312 | 3.12e-39 | 142 |
Msa1369790 | MtrunA17_Chr4g0036281 | 34.237 | 295 | 150 | 12 | 49 | 335 | 58 | 316 | 8.50e-37 | 135 |
Msa1369790 | MtrunA17_Chr4g0037291 | 34.237 | 295 | 150 | 12 | 49 | 335 | 99 | 357 | 2.40e-36 | 135 |
Msa1369790 | MtrunA17_Chr7g0248661 | 69.333 | 75 | 23 | 0 | 269 | 343 | 2 | 76 | 3.55e-33 | 118 |
Msa1369790 | MtrunA17_Chr2g0283661 | 50.450 | 111 | 54 | 1 | 232 | 342 | 161 | 270 | 2.41e-32 | 122 |
Msa1369790 | MtrunA17_Chr2g0283661 | 34.615 | 156 | 95 | 5 | 11 | 163 | 5 | 156 | 7.99e-20 | 88.2 |
Msa1369790 | MtrunA17_Chr2g0311091 | 39.735 | 151 | 79 | 3 | 40 | 178 | 34 | 184 | 1.96e-26 | 103 |
Msa1369790 | MtrunA17_Chr1g0156771 | 43.810 | 105 | 54 | 3 | 124 | 224 | 51 | 154 | 2.69e-24 | 97.4 |
Msa1369790 | MtrunA17_Chr7g0271041 | 26.906 | 223 | 137 | 7 | 134 | 335 | 113 | 330 | 1.05e-21 | 94.7 |
Msa1369790 | MtrunA17_Chr7g0271031 | 27.160 | 243 | 149 | 8 | 126 | 345 | 149 | 386 | 4.16e-21 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1369790 | AT5G50260.1 | 68.698 | 361 | 110 | 2 | 3 | 360 | 1 | 361 | 0.0 | 530 |
Msa1369790 | AT3G48340.1 | 64.917 | 362 | 122 | 4 | 3 | 360 | 1 | 361 | 3.03e-171 | 481 |
Msa1369790 | AT3G48350.1 | 61.944 | 360 | 135 | 2 | 3 | 360 | 1 | 360 | 1.41e-166 | 469 |
Msa1369790 | AT3G48350.2 | 61.372 | 277 | 105 | 2 | 3 | 277 | 1 | 277 | 1.93e-121 | 352 |
Msa1369790 | AT1G20850.1 | 52.484 | 322 | 148 | 4 | 25 | 344 | 36 | 354 | 9.13e-117 | 343 |
Msa1369790 | AT5G45890.1 | 48.725 | 353 | 154 | 9 | 3 | 342 | 6 | 344 | 7.73e-115 | 337 |
Msa1369790 | AT4G35350.1 | 49.280 | 347 | 161 | 6 | 6 | 344 | 14 | 353 | 8.84e-115 | 338 |
Msa1369790 | AT3G19390.1 | 49.292 | 353 | 166 | 7 | 1 | 349 | 8 | 351 | 1.27e-112 | 335 |
Msa1369790 | AT5G43060.1 | 50.829 | 362 | 154 | 8 | 1 | 345 | 1 | 355 | 1.42e-112 | 336 |
Msa1369790 | AT1G47128.1 | 49.148 | 352 | 165 | 6 | 1 | 344 | 8 | 353 | 1.95e-109 | 328 |
Msa1369790 | AT1G06260.1 | 47.801 | 341 | 168 | 6 | 7 | 344 | 10 | 343 | 1.62e-108 | 321 |
Msa1369790 | AT4G36880.1 | 48.943 | 331 | 157 | 7 | 32 | 352 | 41 | 369 | 2.17e-107 | 320 |
Msa1369790 | AT2G27420.1 | 48.910 | 321 | 153 | 6 | 33 | 343 | 28 | 347 | 6.21e-100 | 300 |
Msa1369790 | AT3G19400.1 | 46.667 | 345 | 161 | 10 | 18 | 356 | 26 | 353 | 1.67e-99 | 299 |
Msa1369790 | AT4G11310.1 | 45.251 | 358 | 174 | 11 | 4 | 346 | 5 | 355 | 4.43e-99 | 298 |
Msa1369790 | AT3G49340.1 | 47.785 | 316 | 157 | 6 | 33 | 343 | 28 | 340 | 5.90e-99 | 297 |
Msa1369790 | AT4G11320.2 | 48.562 | 313 | 151 | 7 | 39 | 346 | 55 | 362 | 2.70e-98 | 296 |
Msa1369790 | AT4G11320.1 | 48.562 | 313 | 151 | 7 | 39 | 346 | 55 | 362 | 2.70e-98 | 296 |
Msa1369790 | AT2G34080.1 | 44.571 | 350 | 172 | 7 | 6 | 343 | 5 | 344 | 6.22e-97 | 292 |
Msa1369790 | AT4G23520.1 | 46.203 | 316 | 159 | 8 | 39 | 349 | 46 | 355 | 1.26e-95 | 289 |
Msa1369790 | AT1G09850.1 | 47.742 | 310 | 154 | 6 | 38 | 344 | 30 | 334 | 1.31e-91 | 281 |
Msa1369790 | AT1G29090.1 | 43.678 | 348 | 188 | 6 | 2 | 343 | 9 | 354 | 1.78e-91 | 278 |
Msa1369790 | AT1G29080.1 | 43.614 | 321 | 170 | 7 | 30 | 343 | 29 | 345 | 6.46e-87 | 266 |
Msa1369790 | AT4G35350.2 | 47.331 | 281 | 131 | 6 | 7 | 277 | 13 | 286 | 2.06e-82 | 253 |
Msa1369790 | AT3G43960.1 | 41.860 | 344 | 180 | 12 | 13 | 347 | 18 | 350 | 1.47e-77 | 243 |
Msa1369790 | AT1G29110.1 | 38.551 | 345 | 186 | 10 | 7 | 343 | 7 | 333 | 5.06e-73 | 230 |
Msa1369790 | AT3G19400.2 | 45.594 | 261 | 128 | 8 | 18 | 272 | 26 | 278 | 5.15e-67 | 213 |
Msa1369790 | AT5G60360.1 | 41.000 | 300 | 156 | 11 | 51 | 343 | 71 | 356 | 5.27e-63 | 205 |
Msa1369790 | AT3G45310.1 | 41.000 | 300 | 156 | 11 | 51 | 343 | 71 | 356 | 6.31e-62 | 202 |
Msa1369790 | AT5G60360.2 | 40.667 | 300 | 156 | 12 | 51 | 343 | 71 | 355 | 2.23e-60 | 198 |
Msa1369790 | AT3G45310.2 | 40.667 | 300 | 156 | 12 | 51 | 343 | 71 | 355 | 2.32e-59 | 196 |
Msa1369790 | AT5G60360.3 | 40.067 | 297 | 157 | 11 | 51 | 340 | 71 | 353 | 6.04e-59 | 195 |
Msa1369790 | AT4G39090.1 | 38.511 | 309 | 161 | 9 | 44 | 335 | 56 | 352 | 9.99e-58 | 192 |
Msa1369790 | AT2G21430.1 | 35.328 | 351 | 192 | 12 | 6 | 335 | 13 | 349 | 8.15e-57 | 189 |
Msa1369790 | AT4G16190.1 | 36.364 | 297 | 164 | 8 | 55 | 335 | 71 | 358 | 1.59e-51 | 176 |
Msa1369790 | AT3G54940.2 | 35.000 | 300 | 166 | 10 | 54 | 335 | 66 | 354 | 5.70e-49 | 169 |
Msa1369790 | AT3G54940.3 | 34.722 | 216 | 126 | 6 | 54 | 259 | 66 | 276 | 3.19e-34 | 127 |
Msa1369790 | AT1G02305.1 | 27.957 | 279 | 160 | 11 | 85 | 335 | 68 | 333 | 6.32e-25 | 104 |
Msa1369790 | AT4G01610.1 | 25.887 | 282 | 168 | 11 | 85 | 338 | 65 | 333 | 1.92e-21 | 94.4 |
Msa1369790 | AT2G22160.1 | 50.000 | 96 | 36 | 2 | 60 | 151 | 15 | 102 | 4.33e-21 | 87.4 |
Msa1369790 | AT1G02300.1 | 29.048 | 210 | 123 | 6 | 147 | 335 | 146 | 350 | 2.62e-20 | 91.7 |
Msa1369790 | AT4G01610.2 | 25.177 | 282 | 170 | 11 | 85 | 338 | 65 | 333 | 1.77e-19 | 89.0 |
Find 88 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAGGCTTATCTAATTTAT+TGG | 0.217778 | tig0018912:-45198 | None:intergenic |
TTATTCAACTTAAGCTTATA+AGG | 0.243487 | tig0018912:-45215 | None:intergenic |
ACATGACTAATTATGAATTT+AGG | 0.259669 | tig0018912:+45246 | Msa1369790:CDS |
AGCTAAGAGCTTTGATTTCC+AGG | 0.263284 | tig0018912:+45037 | Msa1369790:CDS |
AGGATGCAACGGTGGGTTAA+TGG | 0.279883 | tig0018912:+45813 | Msa1369790:CDS |
TAACTTGTATAGGTAGTTGC+TGG | 0.293976 | tig0018912:+45683 | Msa1369790:intron |
CTCAAGATGGAACAAAATAT+TGG | 0.333579 | tig0018912:+46355 | Msa1369790:CDS |
GAGCATCTATGCTGATTCTA+AGG | 0.335794 | tig0018912:+45268 | Msa1369790:CDS |
GGGAAGTGAATGGGGAGAAC+AGG | 0.351413 | tig0018912:+46395 | Msa1369790:CDS |
TAATTACAGGGAGTATTTAC+TGG | 0.363002 | tig0018912:+46279 | Msa1369790:intron |
TCGATTGATTGGAGGAAGAT+AGG | 0.372632 | tig0018912:+45371 | Msa1369790:CDS |
ATCATTTATAGCTCATCTTT+CGG | 0.372684 | tig0018912:-46531 | None:intergenic |
TTCGAGTTCATCAAGCAAAA+TGG | 0.391365 | tig0018912:+45844 | Msa1369790:CDS |
TCAACAATTGTAGCTGTTGA+AGG | 0.396428 | tig0018912:+45712 | Msa1369790:CDS |
ATGTTCCTTCTTCGATTGAT+TGG | 0.402034 | tig0018912:+45360 | Msa1369790:CDS |
TAGACCTTGCTTGTGAGATA+TGG | 0.415919 | tig0018912:-46439 | None:intergenic |
ATTGGACAGTGAAGAACTCT+TGG | 0.427329 | tig0018912:+46373 | Msa1369790:CDS |
AAACCAGCAGTGTCAATTGA+TGG | 0.433654 | tig0018912:+46051 | Msa1369790:CDS |
GAACTCTTGGGGAAGTGAAT+GGG | 0.438030 | tig0018912:+46386 | Msa1369790:CDS |
TATCTAATTTATTGGTATTG+TGG | 0.443235 | tig0018912:-45190 | None:intergenic |
GCATCAATAGCTACAGAAAT+CGG | 0.448717 | tig0018912:-46132 | None:intergenic |
AATGCTGCTTCATTGTTAGC+AGG | 0.455028 | tig0018912:-46087 | None:intergenic |
GGGGTAGCAATTGTGGGGTA+TGG | 0.459702 | tig0018912:+46327 | Msa1369790:CDS |
TAAAATCAAAGCTAGGGATA+AGG | 0.466804 | tig0018912:-45009 | None:intergenic |
AGGTGCTGTCACCGGGGTAA+AGG | 0.468205 | tig0018912:+45391 | Msa1369790:CDS |
GGAAGATAGGTGCTGTCACC+GGG | 0.470663 | tig0018912:+45384 | Msa1369790:CDS |
ATTTCTGTAGCTATTGATGC+CGG | 0.473128 | tig0018912:+46135 | Msa1369790:CDS |
TGGCCATCAATTGACACTGC+TGG | 0.473744 | tig0018912:-46054 | None:intergenic |
AGCATCAGAGAAAAGTTTGT+GGG | 0.476908 | tig0018912:+45070 | Msa1369790:CDS |
GAATCATGGGGTAGCAATTG+TGG | 0.479525 | tig0018912:+46320 | Msa1369790:CDS |
TTGGACAGTGAAGAACTCTT+GGG | 0.479993 | tig0018912:+46374 | Msa1369790:CDS |
AATCATGGGGTAGCAATTGT+GGG | 0.482862 | tig0018912:+46321 | Msa1369790:CDS |
TTTCTGTAGCTATTGATGCC+GGG | 0.483109 | tig0018912:+46136 | Msa1369790:CDS |
AGAACTCTTGGGGAAGTGAA+TGG | 0.483270 | tig0018912:+46385 | Msa1369790:CDS |
TTATCCTTATGCTGCAAAAG+AGG | 0.485453 | tig0018912:+45885 | Msa1369790:CDS |
TGTGGGATTTGTACGAGAGA+TGG | 0.486184 | tig0018912:+45087 | Msa1369790:CDS |
AACTTGTATAGGTAGTTGCT+GGG | 0.493124 | tig0018912:+45684 | Msa1369790:intron |
CTATTCCTAAAATCAAAGCT+AGG | 0.494841 | tig0018912:-45016 | None:intergenic |
GGAAGTGAATGGGGAGAACA+GGG | 0.501956 | tig0018912:+46396 | Msa1369790:CDS |
AGGTCTATGTGGCATAGCTA+TGG | 0.507498 | tig0018912:+46455 | Msa1369790:CDS |
GGGAACCTGTAATATACAAA+AGG | 0.508036 | tig0018912:+45906 | Msa1369790:CDS |
TTCCTTCTTCGATTGATTGG+AGG | 0.508300 | tig0018912:+45363 | Msa1369790:CDS |
TTCTGTAGCTATTGATGCCG+GGG | 0.509636 | tig0018912:+46137 | Msa1369790:CDS |
TATCCTTATGCTGCAAAAGA+GGG | 0.511600 | tig0018912:+45886 | Msa1369790:CDS |
AGCTACAGAAATCGGTTGGT+TGG | 0.518524 | tig0018912:-46124 | None:intergenic |
AGGAAGATAGGTGCTGTCAC+CGG | 0.527243 | tig0018912:+45383 | Msa1369790:CDS |
AACAAGTAAGCTTACCGCAT+TGG | 0.533561 | tig0018912:-45421 | None:intergenic |
TGTGGTACTGAGCTGAATCA+TGG | 0.537115 | tig0018912:+46306 | Msa1369790:CDS |
TTCCTCCAATCAATCGAAGA+AGG | 0.537545 | tig0018912:-45365 | None:intergenic |
CACAAGTTCTTGCTCGGACA+AGG | 0.537976 | tig0018912:-45767 | None:intergenic |
TATTCCTAAAATCAAAGCTA+GGG | 0.538115 | tig0018912:-45015 | None:intergenic |
GCAATCCACAAGTTCTTGCT+CGG | 0.538311 | tig0018912:-45773 | None:intergenic |
TGCAACACTAAAGTGAATCA+AGG | 0.538549 | tig0018912:+45793 | Msa1369790:CDS |
CTGATGCTAAGTCATTCTCC+TGG | 0.541617 | tig0018912:-45055 | None:intergenic |
GTGGTACTGAGCTGAATCAT+GGG | 0.550981 | tig0018912:+46307 | Msa1369790:CDS |
GGGTATGGAGCAACTCAAGA+TGG | 0.553677 | tig0018912:+46342 | Msa1369790:CDS |
GGGTTACATTAGAATGCAAA+GGG | 0.553947 | tig0018912:+46416 | Msa1369790:CDS |
GTCACCGGGGTAAAGGATCA+AGG | 0.557892 | tig0018912:+45398 | Msa1369790:CDS |
AACTCTTGGGGAAGTGAATG+GGG | 0.569712 | tig0018912:+46387 | Msa1369790:CDS |
CATTGTCATGTGACAATCCA+CGG | 0.575595 | tig0018912:-45310 | None:intergenic |
ATGCTGCTTCATTGTTAGCA+GGG | 0.581774 | tig0018912:-46086 | None:intergenic |
TGTTAGCAGGGACATTCTCA+TGG | 0.582058 | tig0018912:-46074 | None:intergenic |
TAGCATCAGAGAAAAGTTTG+TGG | 0.583867 | tig0018912:+45069 | Msa1369790:CDS |
AAACTGGAAATCAGATCCCC+CGG | 0.593442 | tig0018912:-46154 | None:intergenic |
GTGAATCAAGGATGCAACGG+TGG | 0.599603 | tig0018912:+45805 | Msa1369790:CDS |
AGGGTTACATTAGAATGCAA+AGG | 0.601301 | tig0018912:+46415 | Msa1369790:CDS |
TCTATGTGGCATAGCTATGG+AGG | 0.601740 | tig0018912:+46458 | Msa1369790:CDS |
CAATAGCTACAGAAATCGGT+TGG | 0.603005 | tig0018912:-46128 | None:intergenic |
CGTGGATTGTCACATGACAA+TGG | 0.604341 | tig0018912:+45311 | Msa1369790:CDS |
CTTGTCCGAGCAAGAACTTG+TGG | 0.608838 | tig0018912:+45768 | Msa1369790:CDS |
TCTCACAAGCAAGGTCTATG+TGG | 0.620594 | tig0018912:+46444 | Msa1369790:CDS |
TGAATCAAGGATGCAACGGT+GGG | 0.628142 | tig0018912:+45806 | Msa1369790:CDS |
TCTGTAGCTATTGATGCCGG+GGG | 0.632927 | tig0018912:+46138 | Msa1369790:CDS |
TTGGCCTTGATCCTTTACCC+CGG | 0.635267 | tig0018912:-45402 | None:intergenic |
TCCACATTCTCATACATGAA+CGG | 0.636776 | tig0018912:-45335 | None:intergenic |
AATCATCATAGAATGTTCCG+TGG | 0.642215 | tig0018912:+45293 | Msa1369790:CDS |
ACCGTTCATGTATGAGAATG+TGG | 0.645392 | tig0018912:+45334 | Msa1369790:CDS |
AAAGTGAATCAAGGATGCAA+CGG | 0.646923 | tig0018912:+45802 | Msa1369790:CDS |
AGGGCCATATCTCACAAGCA+AGG | 0.656245 | tig0018912:+46435 | Msa1369790:CDS |
TGGACAGTGAAGAACTCTTG+GGG | 0.663115 | tig0018912:+46375 | Msa1369790:CDS |
ATTGTGGACATGCATAACAT+TGG | 0.668124 | tig0018912:-45174 | None:intergenic |
ATCATGGGGTAGCAATTGTG+GGG | 0.693047 | tig0018912:+46322 | Msa1369790:CDS |
CAAGACTTCGAGTAACTGTG+TGG | 0.728098 | tig0018912:-45118 | None:intergenic |
GGAGTATTTACTGGACACTG+TGG | 0.740210 | tig0018912:+46288 | Msa1369790:CDS |
TGGTACTGAGCTGAATCATG+GGG | 0.741700 | tig0018912:+46308 | Msa1369790:CDS |
GAAGATAGGTGCTGTCACCG+GGG | 0.757764 | tig0018912:+45385 | Msa1369790:CDS |
GTTCATGTATGAGAATGTGG+AGG | 0.769545 | tig0018912:+45337 | Msa1369790:CDS |
GTAAAGGATCAAGGCCAATG+CGG | 0.813840 | tig0018912:+45407 | Msa1369790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTATTAATTATATATT+AGG | - | tig0018912:45964-45983 | None:intergenic | 0.0% |
!! | AAATTTATTAATTATATATT+AGG | - | tig0018912:45964-45983 | None:intergenic | 0.0% |
!!! | AATTTTATTTGATTAACTTA+TGG | + | tig0018912:45979-45998 | Msa1369790:intron | 10.0% |
!!! | ATTTTATTTGATTAACTTAT+GGG | + | tig0018912:45980-45999 | Msa1369790:intron | 10.0% |
!!! | ATATTTTTGTAATTAAAAGT+GGG | - | tig0018912:46260-46279 | None:intergenic | 10.0% |
!!! | TATATTTTTGTAATTAAAAG+TGG | - | tig0018912:46261-46280 | None:intergenic | 10.0% |
!! | AATTACAAAAATATAATTAC+AGG | + | tig0018912:46266-46285 | Msa1369790:intron | 10.0% |
!! | ATTACAAAAATATAATTACA+GGG | + | tig0018912:46267-46286 | Msa1369790:intron | 10.0% |
!!! | AATTTTATTTGATTAACTTA+TGG | + | tig0018912:45979-45998 | Msa1369790:intron | 10.0% |
!!! | ATTTTATTTGATTAACTTAT+GGG | + | tig0018912:45980-45999 | Msa1369790:intron | 10.0% |
!!! | ATATTTTTGTAATTAAAAGT+GGG | - | tig0018912:46260-46279 | None:intergenic | 10.0% |
!!! | TATATTTTTGTAATTAAAAG+TGG | - | tig0018912:46261-46280 | None:intergenic | 10.0% |
!! | AATTACAAAAATATAATTAC+AGG | + | tig0018912:46266-46285 | Msa1369790:intron | 10.0% |
!! | ATTACAAAAATATAATTACA+GGG | + | tig0018912:46267-46286 | Msa1369790:intron | 10.0% |
!! | TATCTAATTTATTGGTATTG+TGG | - | tig0018912:45193-45212 | None:intergenic | 20.0% |
!! | ATAAGGCTTATCTAATTTAT+TGG | - | tig0018912:45201-45220 | None:intergenic | 20.0% |
!! | TTATTCAACTTAAGCTTATA+AGG | - | tig0018912:45218-45237 | None:intergenic | 20.0% |
!! | ACATGACTAATTATGAATTT+AGG | + | tig0018912:45246-45265 | Msa1369790:CDS | 20.0% |
!! | TATCTAATTTATTGGTATTG+TGG | - | tig0018912:45193-45212 | None:intergenic | 20.0% |
!! | ATAAGGCTTATCTAATTTAT+TGG | - | tig0018912:45201-45220 | None:intergenic | 20.0% |
!! | TTATTCAACTTAAGCTTATA+AGG | - | tig0018912:45218-45237 | None:intergenic | 20.0% |
!! | ACATGACTAATTATGAATTT+AGG | + | tig0018912:45246-45265 | Msa1369790:CDS | 20.0% |
! | TATTCCTAAAATCAAAGCTA+GGG | - | tig0018912:45018-45037 | None:intergenic | 25.0% |
! | ATAATCAAATACAGACTAAG+TGG | - | tig0018912:45560-45579 | None:intergenic | 25.0% |
! | TCTGTATTTGATTATACGTT+TGG | + | tig0018912:45565-45584 | Msa1369790:intron | 25.0% |
!!! | GAATTGTTTCTAACTTGTAT+AGG | + | tig0018912:45673-45692 | Msa1369790:intron | 25.0% |
! | CAAGTGAAAATGTGTTAATT+TGG | - | tig0018912:46019-46038 | None:intergenic | 25.0% |
!! | TTTTCAGATGACTTTTTGAT+TGG | - | tig0018912:46492-46511 | None:intergenic | 25.0% |
! | TATTCCTAAAATCAAAGCTA+GGG | - | tig0018912:45018-45037 | None:intergenic | 25.0% |
! | ATAATCAAATACAGACTAAG+TGG | - | tig0018912:45560-45579 | None:intergenic | 25.0% |
! | TCTGTATTTGATTATACGTT+TGG | + | tig0018912:45565-45584 | Msa1369790:intron | 25.0% |
!!! | GAATTGTTTCTAACTTGTAT+AGG | + | tig0018912:45673-45692 | Msa1369790:intron | 25.0% |
! | CAAGTGAAAATGTGTTAATT+TGG | - | tig0018912:46019-46038 | None:intergenic | 25.0% |
!! | TTTTCAGATGACTTTTTGAT+TGG | - | tig0018912:46492-46511 | None:intergenic | 25.0% |
TAAAATCAAAGCTAGGGATA+AGG | - | tig0018912:45012-45031 | None:intergenic | 30.0% | |
!!! | TTATCCCTAGCTTTGATTTT+AGG | + | tig0018912:45011-45030 | Msa1369790:CDS | 30.0% |
CTATTCCTAAAATCAAAGCT+AGG | - | tig0018912:45019-45038 | None:intergenic | 30.0% | |
TTCAAGCGATTTAACTAACA+TGG | - | tig0018912:45514-45533 | None:intergenic | 30.0% | |
GTTTGGATCCAAAATTGATA+TGG | + | tig0018912:45582-45601 | Msa1369790:intron | 30.0% | |
!! | GTTCTGAAGTAGAATTGATT+TGG | + | tig0018912:45644-45663 | Msa1369790:intron | 30.0% |
! | AACACATTTTCACTTGATGT+AGG | + | tig0018912:46023-46042 | Msa1369790:intron | 30.0% |
!!! | TGATTTCCAGTTTTATTCAG+AGG | + | tig0018912:46164-46183 | Msa1369790:CDS | 30.0% |
! | GTTTTACCTCTGAATAAAAC+TGG | - | tig0018912:46173-46192 | None:intergenic | 30.0% |
TGTAATTAAAAGTGGGATCA+AGG | - | tig0018912:46253-46272 | None:intergenic | 30.0% | |
!! | TAATTACAGGGAGTATTTAC+TGG | + | tig0018912:46279-46298 | Msa1369790:intron | 30.0% |
CTCAAGATGGAACAAAATAT+TGG | + | tig0018912:46355-46374 | Msa1369790:CDS | 30.0% | |
TAAAATCAAAGCTAGGGATA+AGG | - | tig0018912:45012-45031 | None:intergenic | 30.0% | |
!!! | TTATCCCTAGCTTTGATTTT+AGG | + | tig0018912:45011-45030 | Msa1369790:CDS | 30.0% |
CTATTCCTAAAATCAAAGCT+AGG | - | tig0018912:45019-45038 | None:intergenic | 30.0% | |
TTCAAGCGATTTAACTAACA+TGG | - | tig0018912:45514-45533 | None:intergenic | 30.0% | |
GTTTGGATCCAAAATTGATA+TGG | + | tig0018912:45582-45601 | Msa1369790:intron | 30.0% | |
!! | GTTCTGAAGTAGAATTGATT+TGG | + | tig0018912:45644-45663 | Msa1369790:intron | 30.0% |
! | AACACATTTTCACTTGATGT+AGG | + | tig0018912:46023-46042 | Msa1369790:intron | 30.0% |
!!! | TGATTTCCAGTTTTATTCAG+AGG | + | tig0018912:46164-46183 | Msa1369790:CDS | 30.0% |
! | GTTTTACCTCTGAATAAAAC+TGG | - | tig0018912:46173-46192 | None:intergenic | 30.0% |
TGTAATTAAAAGTGGGATCA+AGG | - | tig0018912:46253-46272 | None:intergenic | 30.0% | |
!! | TAATTACAGGGAGTATTTAC+TGG | + | tig0018912:46279-46298 | Msa1369790:intron | 30.0% |
CTCAAGATGGAACAAAATAT+TGG | + | tig0018912:46355-46374 | Msa1369790:CDS | 30.0% | |
TAGCATCAGAGAAAAGTTTG+TGG | + | tig0018912:45069-45088 | Msa1369790:CDS | 35.0% | |
AGCATCAGAGAAAAGTTTGT+GGG | + | tig0018912:45070-45089 | Msa1369790:CDS | 35.0% | |
ATTGTGGACATGCATAACAT+TGG | - | tig0018912:45177-45196 | None:intergenic | 35.0% | |
AATCATCATAGAATGTTCCG+TGG | + | tig0018912:45293-45312 | Msa1369790:CDS | 35.0% | |
TCCACATTCTCATACATGAA+CGG | - | tig0018912:45338-45357 | None:intergenic | 35.0% | |
ATGTTCCTTCTTCGATTGAT+TGG | + | tig0018912:45360-45379 | Msa1369790:CDS | 35.0% | |
! | CCAGTTCTCCATATCAATTT+TGG | - | tig0018912:45593-45612 | None:intergenic | 35.0% |
CCAAAATTGATATGGAGAAC+TGG | + | tig0018912:45590-45609 | Msa1369790:intron | 35.0% | |
! | TAACTTGTATAGGTAGTTGC+TGG | + | tig0018912:45683-45702 | Msa1369790:intron | 35.0% |
AACTTGTATAGGTAGTTGCT+GGG | + | tig0018912:45684-45703 | Msa1369790:intron | 35.0% | |
TCAACAATTGTAGCTGTTGA+AGG | + | tig0018912:45712-45731 | Msa1369790:CDS | 35.0% | |
!! | CTAGTTTTCGTGTCTTGATT+TGG | - | tig0018912:45744-45763 | None:intergenic | 35.0% |
TGCAACACTAAAGTGAATCA+AGG | + | tig0018912:45793-45812 | Msa1369790:CDS | 35.0% | |
AAAGTGAATCAAGGATGCAA+CGG | + | tig0018912:45802-45821 | Msa1369790:CDS | 35.0% | |
! | TTCGAGTTCATCAAGCAAAA+TGG | + | tig0018912:45844-45863 | Msa1369790:CDS | 35.0% |
TTATCCTTATGCTGCAAAAG+AGG | + | tig0018912:45885-45904 | Msa1369790:CDS | 35.0% | |
TATCCTTATGCTGCAAAAGA+GGG | + | tig0018912:45886-45905 | Msa1369790:CDS | 35.0% | |
GGGAACCTGTAATATACAAA+AGG | + | tig0018912:45906-45925 | Msa1369790:CDS | 35.0% | |
! | GTGCACCTTTTGTATATTAC+AGG | - | tig0018912:45914-45933 | None:intergenic | 35.0% |
GCATCAATAGCTACAGAAAT+CGG | - | tig0018912:46135-46154 | None:intergenic | 35.0% | |
ATTTCTGTAGCTATTGATGC+CGG | + | tig0018912:46135-46154 | Msa1369790:CDS | 35.0% | |
AGGGTTACATTAGAATGCAA+AGG | + | tig0018912:46415-46434 | Msa1369790:CDS | 35.0% | |
GGGTTACATTAGAATGCAAA+GGG | + | tig0018912:46416-46435 | Msa1369790:CDS | 35.0% | |
! | TCGGAAGTGAACTTTTTGTT+GGG | - | tig0018912:46515-46534 | None:intergenic | 35.0% |
! | TTCGGAAGTGAACTTTTTGT+TGG | - | tig0018912:46516-46535 | None:intergenic | 35.0% |
TAGCATCAGAGAAAAGTTTG+TGG | + | tig0018912:45069-45088 | Msa1369790:CDS | 35.0% | |
AGCATCAGAGAAAAGTTTGT+GGG | + | tig0018912:45070-45089 | Msa1369790:CDS | 35.0% | |
ATTGTGGACATGCATAACAT+TGG | - | tig0018912:45177-45196 | None:intergenic | 35.0% | |
AATCATCATAGAATGTTCCG+TGG | + | tig0018912:45293-45312 | Msa1369790:CDS | 35.0% | |
TCCACATTCTCATACATGAA+CGG | - | tig0018912:45338-45357 | None:intergenic | 35.0% | |
ATGTTCCTTCTTCGATTGAT+TGG | + | tig0018912:45360-45379 | Msa1369790:CDS | 35.0% | |
! | CCAGTTCTCCATATCAATTT+TGG | - | tig0018912:45593-45612 | None:intergenic | 35.0% |
CCAAAATTGATATGGAGAAC+TGG | + | tig0018912:45590-45609 | Msa1369790:intron | 35.0% | |
! | TAACTTGTATAGGTAGTTGC+TGG | + | tig0018912:45683-45702 | Msa1369790:intron | 35.0% |
AACTTGTATAGGTAGTTGCT+GGG | + | tig0018912:45684-45703 | Msa1369790:intron | 35.0% | |
TCAACAATTGTAGCTGTTGA+AGG | + | tig0018912:45712-45731 | Msa1369790:CDS | 35.0% | |
!! | CTAGTTTTCGTGTCTTGATT+TGG | - | tig0018912:45744-45763 | None:intergenic | 35.0% |
TGCAACACTAAAGTGAATCA+AGG | + | tig0018912:45793-45812 | Msa1369790:CDS | 35.0% | |
AAAGTGAATCAAGGATGCAA+CGG | + | tig0018912:45802-45821 | Msa1369790:CDS | 35.0% | |
! | TTCGAGTTCATCAAGCAAAA+TGG | + | tig0018912:45844-45863 | Msa1369790:CDS | 35.0% |
TTATCCTTATGCTGCAAAAG+AGG | + | tig0018912:45885-45904 | Msa1369790:CDS | 35.0% | |
TATCCTTATGCTGCAAAAGA+GGG | + | tig0018912:45886-45905 | Msa1369790:CDS | 35.0% | |
GGGAACCTGTAATATACAAA+AGG | + | tig0018912:45906-45925 | Msa1369790:CDS | 35.0% | |
! | GTGCACCTTTTGTATATTAC+AGG | - | tig0018912:45914-45933 | None:intergenic | 35.0% |
GCATCAATAGCTACAGAAAT+CGG | - | tig0018912:46135-46154 | None:intergenic | 35.0% | |
ATTTCTGTAGCTATTGATGC+CGG | + | tig0018912:46135-46154 | Msa1369790:CDS | 35.0% | |
AGGGTTACATTAGAATGCAA+AGG | + | tig0018912:46415-46434 | Msa1369790:CDS | 35.0% | |
GGGTTACATTAGAATGCAAA+GGG | + | tig0018912:46416-46435 | Msa1369790:CDS | 35.0% | |
! | TCGGAAGTGAACTTTTTGTT+GGG | - | tig0018912:46515-46534 | None:intergenic | 35.0% |
! | TTCGGAAGTGAACTTTTTGT+TGG | - | tig0018912:46516-46535 | None:intergenic | 35.0% |
! | AGCTAAGAGCTTTGATTTCC+AGG | + | tig0018912:45037-45056 | Msa1369790:CDS | 40.0% |
!! | GAGCATCTATGCTGATTCTA+AGG | + | tig0018912:45268-45287 | Msa1369790:CDS | 40.0% |
CATTGTCATGTGACAATCCA+CGG | - | tig0018912:45313-45332 | None:intergenic | 40.0% | |
ACCGTTCATGTATGAGAATG+TGG | + | tig0018912:45334-45353 | Msa1369790:CDS | 40.0% | |
GTTCATGTATGAGAATGTGG+AGG | + | tig0018912:45337-45356 | Msa1369790:CDS | 40.0% | |
TTCCTTCTTCGATTGATTGG+AGG | + | tig0018912:45363-45382 | Msa1369790:CDS | 40.0% | |
TTCCTCCAATCAATCGAAGA+AGG | - | tig0018912:45368-45387 | None:intergenic | 40.0% | |
TCGATTGATTGGAGGAAGAT+AGG | + | tig0018912:45371-45390 | Msa1369790:CDS | 40.0% | |
AACAAGTAAGCTTACCGCAT+TGG | - | tig0018912:45424-45443 | None:intergenic | 40.0% | |
AAACCAGCAGTGTCAATTGA+TGG | + | tig0018912:46051-46070 | Msa1369790:CDS | 40.0% | |
! | ATGCTGCTTCATTGTTAGCA+GGG | - | tig0018912:46089-46108 | None:intergenic | 40.0% |
! | AATGCTGCTTCATTGTTAGC+AGG | - | tig0018912:46090-46109 | None:intergenic | 40.0% |
CAATAGCTACAGAAATCGGT+TGG | - | tig0018912:46131-46150 | None:intergenic | 40.0% | |
TTTCTGTAGCTATTGATGCC+GGG | + | tig0018912:46136-46155 | Msa1369790:CDS | 40.0% | |
AATCATGGGGTAGCAATTGT+GGG | + | tig0018912:46321-46340 | Msa1369790:CDS | 40.0% | |
ATTGGACAGTGAAGAACTCT+TGG | + | tig0018912:46373-46392 | Msa1369790:CDS | 40.0% | |
TTGGACAGTGAAGAACTCTT+GGG | + | tig0018912:46374-46393 | Msa1369790:CDS | 40.0% | |
TAGACCTTGCTTGTGAGATA+TGG | - | tig0018912:46442-46461 | None:intergenic | 40.0% | |
! | AGCTAAGAGCTTTGATTTCC+AGG | + | tig0018912:45037-45056 | Msa1369790:CDS | 40.0% |
!! | GAGCATCTATGCTGATTCTA+AGG | + | tig0018912:45268-45287 | Msa1369790:CDS | 40.0% |
CATTGTCATGTGACAATCCA+CGG | - | tig0018912:45313-45332 | None:intergenic | 40.0% | |
ACCGTTCATGTATGAGAATG+TGG | + | tig0018912:45334-45353 | Msa1369790:CDS | 40.0% | |
GTTCATGTATGAGAATGTGG+AGG | + | tig0018912:45337-45356 | Msa1369790:CDS | 40.0% | |
TTCCTTCTTCGATTGATTGG+AGG | + | tig0018912:45363-45382 | Msa1369790:CDS | 40.0% | |
TTCCTCCAATCAATCGAAGA+AGG | - | tig0018912:45368-45387 | None:intergenic | 40.0% | |
TCGATTGATTGGAGGAAGAT+AGG | + | tig0018912:45371-45390 | Msa1369790:CDS | 40.0% | |
AACAAGTAAGCTTACCGCAT+TGG | - | tig0018912:45424-45443 | None:intergenic | 40.0% | |
AAACCAGCAGTGTCAATTGA+TGG | + | tig0018912:46051-46070 | Msa1369790:CDS | 40.0% | |
! | ATGCTGCTTCATTGTTAGCA+GGG | - | tig0018912:46089-46108 | None:intergenic | 40.0% |
! | AATGCTGCTTCATTGTTAGC+AGG | - | tig0018912:46090-46109 | None:intergenic | 40.0% |
CAATAGCTACAGAAATCGGT+TGG | - | tig0018912:46131-46150 | None:intergenic | 40.0% | |
TTTCTGTAGCTATTGATGCC+GGG | + | tig0018912:46136-46155 | Msa1369790:CDS | 40.0% | |
AATCATGGGGTAGCAATTGT+GGG | + | tig0018912:46321-46340 | Msa1369790:CDS | 40.0% | |
ATTGGACAGTGAAGAACTCT+TGG | + | tig0018912:46373-46392 | Msa1369790:CDS | 40.0% | |
TTGGACAGTGAAGAACTCTT+GGG | + | tig0018912:46374-46393 | Msa1369790:CDS | 40.0% | |
TAGACCTTGCTTGTGAGATA+TGG | - | tig0018912:46442-46461 | None:intergenic | 40.0% | |
CTGATGCTAAGTCATTCTCC+TGG | - | tig0018912:45058-45077 | None:intergenic | 45.0% | |
TGTGGGATTTGTACGAGAGA+TGG | + | tig0018912:45087-45106 | Msa1369790:CDS | 45.0% | |
CAAGACTTCGAGTAACTGTG+TGG | - | tig0018912:45121-45140 | None:intergenic | 45.0% | |
! | CGTGGATTGTCACATGACAA+TGG | + | tig0018912:45311-45330 | Msa1369790:CDS | 45.0% |
GTAAAGGATCAAGGCCAATG+CGG | + | tig0018912:45407-45426 | Msa1369790:CDS | 45.0% | |
GCAATCCACAAGTTCTTGCT+CGG | - | tig0018912:45776-45795 | None:intergenic | 45.0% | |
TGAATCAAGGATGCAACGGT+GGG | + | tig0018912:45806-45825 | Msa1369790:CDS | 45.0% | |
! | GTTCCCTCTTTTGCAGCATA+AGG | - | tig0018912:45892-45911 | None:intergenic | 45.0% |
TGTTAGCAGGGACATTCTCA+TGG | - | tig0018912:46077-46096 | None:intergenic | 45.0% | |
AGCTACAGAAATCGGTTGGT+TGG | - | tig0018912:46127-46146 | None:intergenic | 45.0% | |
TTCTGTAGCTATTGATGCCG+GGG | + | tig0018912:46137-46156 | Msa1369790:CDS | 45.0% | |
AAACTGGAAATCAGATCCCC+CGG | - | tig0018912:46157-46176 | None:intergenic | 45.0% | |
! | GGAGTATTTACTGGACACTG+TGG | + | tig0018912:46288-46307 | Msa1369790:CDS | 45.0% |
! | TGTGGTACTGAGCTGAATCA+TGG | + | tig0018912:46306-46325 | Msa1369790:CDS | 45.0% |
! | GTGGTACTGAGCTGAATCAT+GGG | + | tig0018912:46307-46326 | Msa1369790:CDS | 45.0% |
! | TGGTACTGAGCTGAATCATG+GGG | + | tig0018912:46308-46327 | Msa1369790:CDS | 45.0% |
GAATCATGGGGTAGCAATTG+TGG | + | tig0018912:46320-46339 | Msa1369790:CDS | 45.0% | |
ATCATGGGGTAGCAATTGTG+GGG | + | tig0018912:46322-46341 | Msa1369790:CDS | 45.0% | |
TGGACAGTGAAGAACTCTTG+GGG | + | tig0018912:46375-46394 | Msa1369790:CDS | 45.0% | |
AGAACTCTTGGGGAAGTGAA+TGG | + | tig0018912:46385-46404 | Msa1369790:CDS | 45.0% | |
GAACTCTTGGGGAAGTGAAT+GGG | + | tig0018912:46386-46405 | Msa1369790:CDS | 45.0% | |
AACTCTTGGGGAAGTGAATG+GGG | + | tig0018912:46387-46406 | Msa1369790:CDS | 45.0% | |
TCTCACAAGCAAGGTCTATG+TGG | + | tig0018912:46444-46463 | Msa1369790:CDS | 45.0% | |
AGGTCTATGTGGCATAGCTA+TGG | + | tig0018912:46455-46474 | Msa1369790:CDS | 45.0% | |
TCTATGTGGCATAGCTATGG+AGG | + | tig0018912:46458-46477 | Msa1369790:CDS | 45.0% | |
CTGATGCTAAGTCATTCTCC+TGG | - | tig0018912:45058-45077 | None:intergenic | 45.0% | |
TGTGGGATTTGTACGAGAGA+TGG | + | tig0018912:45087-45106 | Msa1369790:CDS | 45.0% | |
CAAGACTTCGAGTAACTGTG+TGG | - | tig0018912:45121-45140 | None:intergenic | 45.0% | |
! | CGTGGATTGTCACATGACAA+TGG | + | tig0018912:45311-45330 | Msa1369790:CDS | 45.0% |
GTAAAGGATCAAGGCCAATG+CGG | + | tig0018912:45407-45426 | Msa1369790:CDS | 45.0% | |
GCAATCCACAAGTTCTTGCT+CGG | - | tig0018912:45776-45795 | None:intergenic | 45.0% | |
TGAATCAAGGATGCAACGGT+GGG | + | tig0018912:45806-45825 | Msa1369790:CDS | 45.0% | |
! | GTTCCCTCTTTTGCAGCATA+AGG | - | tig0018912:45892-45911 | None:intergenic | 45.0% |
TGTTAGCAGGGACATTCTCA+TGG | - | tig0018912:46077-46096 | None:intergenic | 45.0% | |
AGCTACAGAAATCGGTTGGT+TGG | - | tig0018912:46127-46146 | None:intergenic | 45.0% | |
TTCTGTAGCTATTGATGCCG+GGG | + | tig0018912:46137-46156 | Msa1369790:CDS | 45.0% | |
AAACTGGAAATCAGATCCCC+CGG | - | tig0018912:46157-46176 | None:intergenic | 45.0% | |
! | GGAGTATTTACTGGACACTG+TGG | + | tig0018912:46288-46307 | Msa1369790:CDS | 45.0% |
! | TGTGGTACTGAGCTGAATCA+TGG | + | tig0018912:46306-46325 | Msa1369790:CDS | 45.0% |
! | GTGGTACTGAGCTGAATCAT+GGG | + | tig0018912:46307-46326 | Msa1369790:CDS | 45.0% |
! | TGGTACTGAGCTGAATCATG+GGG | + | tig0018912:46308-46327 | Msa1369790:CDS | 45.0% |
GAATCATGGGGTAGCAATTG+TGG | + | tig0018912:46320-46339 | Msa1369790:CDS | 45.0% | |
ATCATGGGGTAGCAATTGTG+GGG | + | tig0018912:46322-46341 | Msa1369790:CDS | 45.0% | |
TGGACAGTGAAGAACTCTTG+GGG | + | tig0018912:46375-46394 | Msa1369790:CDS | 45.0% | |
AGAACTCTTGGGGAAGTGAA+TGG | + | tig0018912:46385-46404 | Msa1369790:CDS | 45.0% | |
GAACTCTTGGGGAAGTGAAT+GGG | + | tig0018912:46386-46405 | Msa1369790:CDS | 45.0% | |
AACTCTTGGGGAAGTGAATG+GGG | + | tig0018912:46387-46406 | Msa1369790:CDS | 45.0% | |
TCTCACAAGCAAGGTCTATG+TGG | + | tig0018912:46444-46463 | Msa1369790:CDS | 45.0% | |
AGGTCTATGTGGCATAGCTA+TGG | + | tig0018912:46455-46474 | Msa1369790:CDS | 45.0% | |
TCTATGTGGCATAGCTATGG+AGG | + | tig0018912:46458-46477 | Msa1369790:CDS | 45.0% | |
! | AGGAAGATAGGTGCTGTCAC+CGG | + | tig0018912:45383-45402 | Msa1369790:CDS | 50.0% |
!! | TTGGCCTTGATCCTTTACCC+CGG | - | tig0018912:45405-45424 | None:intergenic | 50.0% |
CACAAGTTCTTGCTCGGACA+AGG | - | tig0018912:45770-45789 | None:intergenic | 50.0% | |
CTTGTCCGAGCAAGAACTTG+TGG | + | tig0018912:45768-45787 | Msa1369790:CDS | 50.0% | |
GTGAATCAAGGATGCAACGG+TGG | + | tig0018912:45805-45824 | Msa1369790:CDS | 50.0% | |
!! | AGGATGCAACGGTGGGTTAA+TGG | + | tig0018912:45813-45832 | Msa1369790:CDS | 50.0% |
TGGCCATCAATTGACACTGC+TGG | - | tig0018912:46057-46076 | None:intergenic | 50.0% | |
TCTGTAGCTATTGATGCCGG+GGG | + | tig0018912:46138-46157 | Msa1369790:CDS | 50.0% | |
GGGTATGGAGCAACTCAAGA+TGG | + | tig0018912:46342-46361 | Msa1369790:CDS | 50.0% | |
GGAAGTGAATGGGGAGAACA+GGG | + | tig0018912:46396-46415 | Msa1369790:CDS | 50.0% | |
AGGGCCATATCTCACAAGCA+AGG | + | tig0018912:46435-46454 | Msa1369790:CDS | 50.0% | |
! | AGGAAGATAGGTGCTGTCAC+CGG | + | tig0018912:45383-45402 | Msa1369790:CDS | 50.0% |
!! | TTGGCCTTGATCCTTTACCC+CGG | - | tig0018912:45405-45424 | None:intergenic | 50.0% |
CACAAGTTCTTGCTCGGACA+AGG | - | tig0018912:45770-45789 | None:intergenic | 50.0% | |
CTTGTCCGAGCAAGAACTTG+TGG | + | tig0018912:45768-45787 | Msa1369790:CDS | 50.0% | |
GTGAATCAAGGATGCAACGG+TGG | + | tig0018912:45805-45824 | Msa1369790:CDS | 50.0% | |
!! | AGGATGCAACGGTGGGTTAA+TGG | + | tig0018912:45813-45832 | Msa1369790:CDS | 50.0% |
TGGCCATCAATTGACACTGC+TGG | - | tig0018912:46057-46076 | None:intergenic | 50.0% | |
TCTGTAGCTATTGATGCCGG+GGG | + | tig0018912:46138-46157 | Msa1369790:CDS | 50.0% | |
GGGTATGGAGCAACTCAAGA+TGG | + | tig0018912:46342-46361 | Msa1369790:CDS | 50.0% | |
GGAAGTGAATGGGGAGAACA+GGG | + | tig0018912:46396-46415 | Msa1369790:CDS | 50.0% | |
AGGGCCATATCTCACAAGCA+AGG | + | tig0018912:46435-46454 | Msa1369790:CDS | 50.0% | |
! | GGAAGATAGGTGCTGTCACC+GGG | + | tig0018912:45384-45403 | Msa1369790:CDS | 55.0% |
! | GAAGATAGGTGCTGTCACCG+GGG | + | tig0018912:45385-45404 | Msa1369790:CDS | 55.0% |
GTCACCGGGGTAAAGGATCA+AGG | + | tig0018912:45398-45417 | Msa1369790:CDS | 55.0% | |
GGGGTAGCAATTGTGGGGTA+TGG | + | tig0018912:46327-46346 | Msa1369790:CDS | 55.0% | |
GGGAAGTGAATGGGGAGAAC+AGG | + | tig0018912:46395-46414 | Msa1369790:CDS | 55.0% | |
! | GGAAGATAGGTGCTGTCACC+GGG | + | tig0018912:45384-45403 | Msa1369790:CDS | 55.0% |
! | GAAGATAGGTGCTGTCACCG+GGG | + | tig0018912:45385-45404 | Msa1369790:CDS | 55.0% |
GTCACCGGGGTAAAGGATCA+AGG | + | tig0018912:45398-45417 | Msa1369790:CDS | 55.0% | |
GGGGTAGCAATTGTGGGGTA+TGG | + | tig0018912:46327-46346 | Msa1369790:CDS | 55.0% | |
GGGAAGTGAATGGGGAGAAC+AGG | + | tig0018912:46395-46414 | Msa1369790:CDS | 55.0% | |
! | AGGTGCTGTCACCGGGGTAA+AGG | + | tig0018912:45391-45410 | Msa1369790:CDS | 60.0% |
! | AGGTGCTGTCACCGGGGTAA+AGG | + | tig0018912:45391-45410 | Msa1369790:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0018912 | gene | 44981 | 46548 | 44981 | ID=Msa1369790;Name=Msa1369790 |
tig0018912 | mRNA | 44981 | 46548 | 44981 | ID=Msa1369790-mRNA-1;Parent=Msa1369790;Name=Msa1369790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.5|1|1|1|4|0|360 |
tig0018912 | exon | 44981 | 45428 | 44981 | ID=Msa1369790-mRNA-1:exon:1340;Parent=Msa1369790-mRNA-1 |
tig0018912 | exon | 45695 | 45927 | 45695 | ID=Msa1369790-mRNA-1:exon:1341;Parent=Msa1369790-mRNA-1 |
tig0018912 | exon | 46045 | 46185 | 46045 | ID=Msa1369790-mRNA-1:exon:1342;Parent=Msa1369790-mRNA-1 |
tig0018912 | exon | 46288 | 46548 | 46288 | ID=Msa1369790-mRNA-1:exon:1343;Parent=Msa1369790-mRNA-1 |
tig0018912 | CDS | 44981 | 45428 | 44981 | ID=Msa1369790-mRNA-1:cds;Parent=Msa1369790-mRNA-1 |
tig0018912 | CDS | 45695 | 45927 | 45695 | ID=Msa1369790-mRNA-1:cds;Parent=Msa1369790-mRNA-1 |
tig0018912 | CDS | 46045 | 46185 | 46045 | ID=Msa1369790-mRNA-1:cds;Parent=Msa1369790-mRNA-1 |
tig0018912 | CDS | 46288 | 46548 | 46288 | ID=Msa1369790-mRNA-1:cds;Parent=Msa1369790-mRNA-1 |
Gene Sequence |
Protein sequence |