Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258880 | XP_013457705.1 | 96.944 | 360 | 11 | 0 | 1 | 360 | 1 | 360 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258880 | sp|P25803|CYSEP_PHAVU | 78.729 | 362 | 75 | 2 | 1 | 360 | 1 | 362 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1258880 | Msa1330160 | 0.943648 | 8.227103e-103 | -8.615850e-47 |
| Msa1258880 | Msa1330190 | 0.973257 | 4.015986e-136 | -8.615850e-47 |
| Msa1258880 | Msa1369790 | 0.943121 | 2.126663e-102 | -8.615850e-47 |
| Msa1208570 | Msa1258880 | 0.993166 | 6.842145e-198 | -8.615850e-47 |
| Msa0492880 | Msa1258880 | 0.804397 | 2.202661e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258880 | MtrunA17_Chr4g0058081 | 96.944 | 360 | 11 | 0 | 1 | 360 | 1 | 360 | 0.0 | 737 |
| Msa1258880 | MtrunA17_Chr3g0116551 | 74.033 | 362 | 92 | 2 | 1 | 360 | 1 | 362 | 0.0 | 576 |
| Msa1258880 | MtrunA17_Chr4g0041061 | 54.885 | 348 | 146 | 9 | 1 | 342 | 1 | 343 | 2.31e-127 | 369 |
| Msa1258880 | MtrunA17_Chr4g0060251 | 54.179 | 347 | 150 | 7 | 1 | 342 | 1 | 343 | 1.43e-126 | 367 |
| Msa1258880 | MtrunA17_Chr4g0040881 | 57.862 | 318 | 124 | 8 | 30 | 342 | 31 | 343 | 1.35e-125 | 364 |
| Msa1258880 | MtrunA17_Chr5g0405751 | 54.519 | 343 | 145 | 9 | 5 | 342 | 6 | 342 | 2.46e-125 | 363 |
| Msa1258880 | MtrunA17_Chr4g0024411 | 59.105 | 313 | 116 | 8 | 38 | 342 | 33 | 341 | 3.76e-125 | 363 |
| Msa1258880 | MtrunA17_Chr4g0041081 | 57.547 | 318 | 125 | 8 | 30 | 342 | 31 | 343 | 5.45e-125 | 363 |
| Msa1258880 | MtrunA17_Chr3g0144281 | 53.161 | 348 | 151 | 7 | 5 | 345 | 7 | 349 | 1.04e-121 | 355 |
| Msa1258880 | MtrunA17_Chr4g0041481 | 57.051 | 312 | 122 | 8 | 35 | 342 | 35 | 338 | 1.61e-121 | 354 |
| Msa1258880 | MtrunA17_Chr4g0041521 | 56.151 | 317 | 127 | 8 | 30 | 342 | 30 | 338 | 1.64e-121 | 354 |
| Msa1258880 | MtrunA17_Chr2g0315491 | 54.070 | 344 | 142 | 9 | 5 | 342 | 6 | 339 | 5.06e-118 | 345 |
| Msa1258880 | MtrunA17_Chr1g0208261 | 54.128 | 327 | 144 | 6 | 23 | 345 | 73 | 397 | 1.13e-116 | 348 |
| Msa1258880 | MtrunA17_Chr4g0053311 | 49.425 | 348 | 163 | 7 | 1 | 344 | 4 | 342 | 6.08e-115 | 338 |
| Msa1258880 | MtrunA17_Chr4g0040851 | 57.192 | 292 | 115 | 5 | 54 | 343 | 76 | 359 | 1.48e-114 | 337 |
| Msa1258880 | MtrunA17_Chr3g0134231 | 50.430 | 349 | 162 | 8 | 6 | 345 | 17 | 363 | 2.10e-112 | 335 |
| Msa1258880 | MtrunA17_Chr4g0041471 | 49.363 | 314 | 154 | 4 | 33 | 343 | 30 | 341 | 1.06e-107 | 319 |
| Msa1258880 | MtrunA17_Chr2g0325121 | 51.948 | 308 | 136 | 6 | 40 | 344 | 39 | 337 | 1.30e-106 | 316 |
| Msa1258880 | MtrunA17_Chr2g0319991 | 48.378 | 339 | 161 | 7 | 11 | 343 | 13 | 343 | 6.52e-106 | 314 |
| Msa1258880 | MtrunA17_Chr1g0153011 | 49.014 | 355 | 149 | 10 | 1 | 344 | 10 | 343 | 1.34e-104 | 315 |
| Msa1258880 | MtrunA17_Chr7g0248391 | 49.536 | 323 | 143 | 10 | 26 | 343 | 30 | 337 | 3.33e-100 | 300 |
| Msa1258880 | MtrunA17_Chr3g0142071 | 48.553 | 311 | 156 | 4 | 39 | 346 | 49 | 358 | 1.74e-94 | 289 |
| Msa1258880 | MtrunA17_Chr7g0248811 | 46.707 | 334 | 161 | 8 | 13 | 342 | 14 | 334 | 9.31e-94 | 283 |
| Msa1258880 | MtrunA17_Chr2g0283901 | 42.857 | 350 | 180 | 12 | 8 | 345 | 16 | 357 | 2.65e-83 | 261 |
| Msa1258880 | MtrunA17_Chr2g0283671 | 52.294 | 218 | 102 | 2 | 126 | 343 | 12 | 227 | 2.26e-74 | 229 |
| Msa1258880 | MtrunA17_Chr8g0379151 | 40.503 | 358 | 180 | 15 | 6 | 344 | 30 | 373 | 2.63e-69 | 222 |
| Msa1258880 | MtrunA17_Chr2g0311381 | 41.231 | 325 | 164 | 13 | 40 | 345 | 36 | 352 | 4.95e-69 | 220 |
| Msa1258880 | MtrunA17_Chr2g0311471 | 38.873 | 355 | 194 | 13 | 3 | 343 | 1 | 346 | 1.65e-67 | 216 |
| Msa1258880 | MtrunA17_Chr2g0283741 | 36.905 | 336 | 194 | 11 | 30 | 355 | 43 | 370 | 2.43e-65 | 211 |
| Msa1258880 | MtrunA17_Chr0c27g0493921 | 42.193 | 301 | 149 | 12 | 52 | 343 | 64 | 348 | 1.11e-63 | 206 |
| Msa1258880 | MtrunA17_Chr4g0070441 | 42.466 | 292 | 143 | 12 | 52 | 334 | 64 | 339 | 1.61e-60 | 198 |
| Msa1258880 | MtrunA17_Chr1g0155781 | 39.073 | 302 | 149 | 12 | 54 | 335 | 66 | 352 | 4.54e-59 | 195 |
| Msa1258880 | MtrunA17_Chr2g0311391 | 33.858 | 381 | 197 | 15 | 3 | 341 | 1 | 368 | 1.46e-55 | 186 |
| Msa1258880 | MtrunA17_Chr4g0035551 | 37.377 | 305 | 159 | 10 | 49 | 335 | 58 | 348 | 3.42e-55 | 184 |
| Msa1258880 | MtrunA17_Chr1g0156161 | 41.150 | 226 | 124 | 6 | 120 | 341 | 41 | 261 | 7.70e-55 | 181 |
| Msa1258880 | MtrunA17_Chr1g0199131 | 33.819 | 343 | 187 | 11 | 15 | 335 | 34 | 358 | 4.22e-54 | 182 |
| Msa1258880 | MtrunA17_Chr7g0248421 | 52.229 | 157 | 69 | 4 | 152 | 306 | 57 | 209 | 4.72e-45 | 154 |
| Msa1258880 | MtrunA17_Chr4g0036731 | 36.644 | 292 | 143 | 13 | 49 | 335 | 58 | 312 | 6.11e-40 | 144 |
| Msa1258880 | MtrunA17_Chr7g0248371 | 62.626 | 99 | 36 | 1 | 245 | 343 | 34 | 131 | 1.04e-39 | 138 |
| Msa1258880 | MtrunA17_Chr2g0283751 | 36.863 | 255 | 139 | 11 | 30 | 273 | 43 | 286 | 2.11e-39 | 141 |
| Msa1258880 | MtrunA17_Chr4g0036281 | 34.576 | 295 | 149 | 12 | 49 | 335 | 58 | 316 | 1.71e-37 | 137 |
| Msa1258880 | MtrunA17_Chr4g0037291 | 34.576 | 295 | 149 | 12 | 49 | 335 | 99 | 357 | 3.87e-37 | 137 |
| Msa1258880 | MtrunA17_Chr7g0248661 | 69.333 | 75 | 23 | 0 | 269 | 343 | 2 | 76 | 3.58e-33 | 118 |
| Msa1258880 | MtrunA17_Chr2g0283661 | 50.450 | 111 | 54 | 1 | 232 | 342 | 161 | 270 | 2.38e-32 | 122 |
| Msa1258880 | MtrunA17_Chr2g0283661 | 34.615 | 156 | 95 | 5 | 11 | 163 | 5 | 156 | 7.76e-20 | 88.2 |
| Msa1258880 | MtrunA17_Chr2g0311091 | 39.735 | 151 | 79 | 3 | 40 | 178 | 34 | 184 | 2.11e-26 | 103 |
| Msa1258880 | MtrunA17_Chr1g0156771 | 44.762 | 105 | 53 | 3 | 124 | 224 | 51 | 154 | 6.38e-25 | 99.4 |
| Msa1258880 | MtrunA17_Chr7g0271041 | 26.906 | 223 | 137 | 7 | 134 | 335 | 113 | 330 | 1.60e-21 | 94.4 |
| Msa1258880 | MtrunA17_Chr7g0271031 | 27.160 | 243 | 149 | 8 | 126 | 345 | 149 | 386 | 5.18e-21 | 93.6 |
| Msa1258880 | MtrunA17_Chr8g0379671 | 36.090 | 133 | 73 | 6 | 169 | 298 | 23 | 146 | 2.14e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258880 | AT5G50260.1 | 68.975 | 361 | 109 | 2 | 3 | 360 | 1 | 361 | 0.0 | 532 |
| Msa1258880 | AT3G48340.1 | 65.193 | 362 | 121 | 4 | 3 | 360 | 1 | 361 | 5.44e-172 | 483 |
| Msa1258880 | AT3G48350.1 | 62.222 | 360 | 134 | 2 | 3 | 360 | 1 | 360 | 2.57e-167 | 471 |
| Msa1258880 | AT3G48350.2 | 61.733 | 277 | 104 | 2 | 3 | 277 | 1 | 277 | 3.12e-122 | 354 |
| Msa1258880 | AT1G20850.1 | 52.795 | 322 | 147 | 4 | 25 | 344 | 36 | 354 | 2.88e-117 | 344 |
| Msa1258880 | AT5G45890.1 | 49.008 | 353 | 153 | 9 | 3 | 342 | 6 | 344 | 1.37e-115 | 339 |
| Msa1258880 | AT4G35350.1 | 49.568 | 347 | 160 | 6 | 6 | 344 | 14 | 353 | 1.84e-115 | 339 |
| Msa1258880 | AT3G19390.1 | 49.575 | 353 | 165 | 7 | 1 | 349 | 8 | 351 | 2.34e-113 | 337 |
| Msa1258880 | AT5G43060.1 | 51.105 | 362 | 153 | 8 | 1 | 345 | 1 | 355 | 3.46e-113 | 337 |
| Msa1258880 | AT1G47128.1 | 49.432 | 352 | 164 | 6 | 1 | 344 | 8 | 353 | 5.25e-110 | 329 |
| Msa1258880 | AT1G06260.1 | 48.094 | 341 | 167 | 6 | 7 | 344 | 10 | 343 | 2.90e-109 | 323 |
| Msa1258880 | AT4G36880.1 | 49.245 | 331 | 156 | 7 | 32 | 352 | 41 | 369 | 4.02e-108 | 322 |
| Msa1258880 | AT2G27420.1 | 49.221 | 321 | 152 | 6 | 33 | 343 | 28 | 347 | 1.03e-100 | 301 |
| Msa1258880 | AT3G19400.1 | 46.957 | 345 | 160 | 10 | 18 | 356 | 26 | 353 | 3.94e-100 | 300 |
| Msa1258880 | AT3G49340.1 | 47.785 | 316 | 157 | 6 | 33 | 343 | 28 | 340 | 7.92e-99 | 296 |
| Msa1258880 | AT4G11310.1 | 44.972 | 358 | 175 | 11 | 4 | 346 | 5 | 355 | 2.16e-98 | 296 |
| Msa1258880 | AT2G34080.1 | 44.857 | 350 | 171 | 7 | 6 | 343 | 5 | 344 | 1.22e-97 | 293 |
| Msa1258880 | AT4G11320.2 | 48.243 | 313 | 152 | 7 | 39 | 346 | 55 | 362 | 1.29e-97 | 295 |
| Msa1258880 | AT4G11320.1 | 48.243 | 313 | 152 | 7 | 39 | 346 | 55 | 362 | 1.29e-97 | 295 |
| Msa1258880 | AT4G23520.1 | 45.886 | 316 | 160 | 8 | 39 | 349 | 46 | 355 | 6.01e-95 | 287 |
| Msa1258880 | AT1G09850.1 | 48.065 | 310 | 153 | 6 | 38 | 344 | 30 | 334 | 2.88e-92 | 283 |
| Msa1258880 | AT1G29090.1 | 43.966 | 348 | 187 | 6 | 2 | 343 | 9 | 354 | 3.04e-92 | 280 |
| Msa1258880 | AT1G29080.1 | 43.614 | 321 | 170 | 7 | 30 | 343 | 29 | 345 | 7.76e-87 | 266 |
| Msa1258880 | AT4G35350.2 | 47.687 | 281 | 130 | 6 | 7 | 277 | 13 | 286 | 4.65e-83 | 254 |
| Msa1258880 | AT3G43960.1 | 42.151 | 344 | 179 | 12 | 13 | 347 | 18 | 350 | 2.99e-78 | 245 |
| Msa1258880 | AT1G29110.1 | 38.841 | 345 | 185 | 10 | 7 | 343 | 7 | 333 | 9.11e-74 | 232 |
| Msa1258880 | AT3G19400.2 | 45.977 | 261 | 127 | 8 | 18 | 272 | 26 | 278 | 1.25e-67 | 215 |
| Msa1258880 | AT5G60360.1 | 41.000 | 300 | 156 | 11 | 51 | 343 | 71 | 356 | 5.87e-63 | 205 |
| Msa1258880 | AT3G45310.1 | 41.000 | 300 | 156 | 11 | 51 | 343 | 71 | 356 | 7.49e-62 | 202 |
| Msa1258880 | AT5G60360.2 | 40.667 | 300 | 156 | 12 | 51 | 343 | 71 | 355 | 2.33e-60 | 198 |
| Msa1258880 | AT3G45310.2 | 40.667 | 300 | 156 | 12 | 51 | 343 | 71 | 355 | 2.99e-59 | 195 |
| Msa1258880 | AT5G60360.3 | 40.067 | 297 | 157 | 11 | 51 | 340 | 71 | 353 | 6.72e-59 | 194 |
| Msa1258880 | AT4G39090.1 | 38.835 | 309 | 160 | 9 | 44 | 335 | 56 | 352 | 1.94e-58 | 194 |
| Msa1258880 | AT2G21430.1 | 35.613 | 351 | 191 | 12 | 6 | 335 | 13 | 349 | 1.48e-57 | 191 |
| Msa1258880 | AT4G16190.1 | 36.700 | 297 | 163 | 8 | 55 | 335 | 71 | 358 | 3.50e-52 | 177 |
| Msa1258880 | AT3G54940.2 | 35.333 | 300 | 165 | 10 | 54 | 335 | 66 | 354 | 1.14e-49 | 171 |
| Msa1258880 | AT3G54940.3 | 35.185 | 216 | 125 | 6 | 54 | 259 | 66 | 276 | 7.12e-35 | 129 |
| Msa1258880 | AT1G02305.1 | 27.957 | 279 | 160 | 11 | 85 | 335 | 68 | 333 | 9.03e-25 | 103 |
| Msa1258880 | AT4G01610.1 | 25.887 | 282 | 168 | 11 | 85 | 338 | 65 | 333 | 2.63e-21 | 94.0 |
| Msa1258880 | AT2G22160.1 | 50.000 | 96 | 36 | 2 | 60 | 151 | 15 | 102 | 4.33e-21 | 87.4 |
| Msa1258880 | AT1G02300.1 | 29.048 | 210 | 123 | 6 | 147 | 335 | 146 | 350 | 3.40e-20 | 91.3 |
| Msa1258880 | AT4G01610.2 | 25.177 | 282 | 170 | 11 | 85 | 338 | 65 | 333 | 2.42e-19 | 88.6 |
Find 88 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGGCTTATCTAATTTAT+TGG | 0.217778 | 8_2:+60203496 | None:intergenic |
| ACATGACAAATTATGAATTT+AGG | 0.245011 | 8_2:-60203448 | Msa1258880:CDS |
| TTATTCAACTTAAGCTTATA+AGG | 0.250519 | 8_2:+60203479 | None:intergenic |
| AGCTAAGAGCTTTGATTTCC+AGG | 0.263284 | 8_2:-60203657 | Msa1258880:CDS |
| AGGATGCAACGGTGGGTTAA+TGG | 0.279883 | 8_2:-60202881 | Msa1258880:CDS |
| TAACTTGTATAGGTAGTTGC+TGG | 0.293976 | 8_2:-60203011 | Msa1258880:intron |
| CTCAAGATGGAACAAAATAT+TGG | 0.333579 | 8_2:-60202339 | Msa1258880:CDS |
| GAGCATCTATGCTGATTCTA+AGG | 0.335794 | 8_2:-60203426 | Msa1258880:CDS |
| GGGAAGTGAATGGGGAGAAC+AGG | 0.351413 | 8_2:-60202299 | Msa1258880:CDS |
| TAATTACAGGGAGTATTTAC+TGG | 0.363002 | 8_2:-60202415 | Msa1258880:intron |
| TCGATTGATTGGAGGAAGAT+AGG | 0.372632 | 8_2:-60203323 | Msa1258880:CDS |
| ATCATTTATAGCTCATCTTT+CGG | 0.372684 | 8_2:+60202163 | None:intergenic |
| TTCGAGTTCATCAAGCAAAA+TGG | 0.391365 | 8_2:-60202850 | Msa1258880:CDS |
| TCAACAATTGTAGCTGTTGA+AGG | 0.396428 | 8_2:-60202982 | Msa1258880:CDS |
| ATGTTCCTTCTTCGATTGAT+TGG | 0.402034 | 8_2:-60203334 | Msa1258880:CDS |
| TAGACCTTGCTTGTGAGATA+TGG | 0.415919 | 8_2:+60202255 | None:intergenic |
| ATTGGACAGTGAAGAACTCT+TGG | 0.427329 | 8_2:-60202321 | Msa1258880:CDS |
| AAACCAGCAGTGTCAATTGA+TGG | 0.433654 | 8_2:-60202643 | Msa1258880:CDS |
| GAACTCTTGGGGAAGTGAAT+GGG | 0.438030 | 8_2:-60202308 | Msa1258880:CDS |
| TATCTAATTTATTGGTATTG+TGG | 0.443235 | 8_2:+60203504 | None:intergenic |
| GCATCAATAGCTACAGAAAT+CGG | 0.448717 | 8_2:+60202562 | None:intergenic |
| AATGCTGCTTCATTGTTAGC+AGG | 0.455028 | 8_2:+60202607 | None:intergenic |
| GGGGTAGCAATTGTGGGGTA+TGG | 0.459702 | 8_2:-60202367 | Msa1258880:CDS |
| TAAAATCAAAGCTAGGGATA+AGG | 0.466804 | 8_2:+60203685 | None:intergenic |
| AGGTGCTGTCACCGGGGTAA+AGG | 0.468205 | 8_2:-60203303 | Msa1258880:CDS |
| GGAAGATAGGTGCTGTCACC+GGG | 0.470663 | 8_2:-60203310 | Msa1258880:CDS |
| ATTTCTGTAGCTATTGATGC+CGG | 0.473128 | 8_2:-60202559 | Msa1258880:CDS |
| TGGCCATCAATTGACACTGC+TGG | 0.473744 | 8_2:+60202640 | None:intergenic |
| AGCATCAGAGAAAAGTTTGT+GGG | 0.476908 | 8_2:-60203624 | Msa1258880:CDS |
| GAATCATGGGGTAGCAATTG+TGG | 0.479525 | 8_2:-60202374 | Msa1258880:CDS |
| TTGGACAGTGAAGAACTCTT+GGG | 0.479993 | 8_2:-60202320 | Msa1258880:CDS |
| AATCATGGGGTAGCAATTGT+GGG | 0.482862 | 8_2:-60202373 | Msa1258880:CDS |
| TTTCTGTAGCTATTGATGCC+GGG | 0.483109 | 8_2:-60202558 | Msa1258880:CDS |
| AGAACTCTTGGGGAAGTGAA+TGG | 0.483270 | 8_2:-60202309 | Msa1258880:CDS |
| TTATCCTTATGCTGCAAAAG+AGG | 0.485453 | 8_2:-60202809 | Msa1258880:CDS |
| TGTGGGATTTGTACGAGAGA+TGG | 0.486184 | 8_2:-60203607 | Msa1258880:CDS |
| AACTTGTATAGGTAGTTGCT+GGG | 0.493124 | 8_2:-60203010 | Msa1258880:intron |
| CTATTCCTAAAATCAAAGCT+AGG | 0.494841 | 8_2:+60203678 | None:intergenic |
| GGAAGTGAATGGGGAGAACA+GGG | 0.501956 | 8_2:-60202298 | Msa1258880:CDS |
| AGGTCTATGTGGCATAGCTA+TGG | 0.507498 | 8_2:-60202239 | Msa1258880:CDS |
| GGGAACCTGTAATATACAAA+AGG | 0.508036 | 8_2:-60202788 | Msa1258880:intron |
| TTCCTTCTTCGATTGATTGG+AGG | 0.508300 | 8_2:-60203331 | Msa1258880:CDS |
| TTCTGTAGCTATTGATGCCG+GGG | 0.509636 | 8_2:-60202557 | Msa1258880:CDS |
| TATCCTTATGCTGCAAAAGA+GGG | 0.511600 | 8_2:-60202808 | Msa1258880:CDS |
| AGCTACAGAAATCGGTTGGT+TGG | 0.518524 | 8_2:+60202570 | None:intergenic |
| AGGAAGATAGGTGCTGTCAC+CGG | 0.527243 | 8_2:-60203311 | Msa1258880:CDS |
| AACAAGTAAGCTTACCGCAT+TGG | 0.533561 | 8_2:+60203273 | None:intergenic |
| TGTGGTACTGAGCTGAATCA+TGG | 0.537115 | 8_2:-60202388 | Msa1258880:CDS |
| TTCCTCCAATCAATCGAAGA+AGG | 0.537545 | 8_2:+60203329 | None:intergenic |
| CACAAGTTCTTGCTCGGACA+AGG | 0.537976 | 8_2:+60202927 | None:intergenic |
| TATTCCTAAAATCAAAGCTA+GGG | 0.538115 | 8_2:+60203679 | None:intergenic |
| CTGATGCTAAGTCATTCTCC+TGG | 0.541617 | 8_2:+60203639 | None:intergenic |
| GTGGTACTGAGCTGAATCAT+GGG | 0.550981 | 8_2:-60202387 | Msa1258880:CDS |
| TGCGACACTAAAGTGAATCA+AGG | 0.551630 | 8_2:-60202901 | Msa1258880:CDS |
| GGGTATGGAGCAACTCAAGA+TGG | 0.553677 | 8_2:-60202352 | Msa1258880:CDS |
| GGGTTACATTAGAATGCAAA+GGG | 0.553947 | 8_2:-60202278 | Msa1258880:CDS |
| GTCACCGGGGTAAAGGATCA+AGG | 0.557892 | 8_2:-60203296 | Msa1258880:CDS |
| AACTCTTGGGGAAGTGAATG+GGG | 0.569712 | 8_2:-60202307 | Msa1258880:CDS |
| CATTGTCATGTGACAATCCA+CGG | 0.575595 | 8_2:+60203384 | None:intergenic |
| GCAATCCACAAGTTCTTGCT+CGG | 0.579328 | 8_2:+60202921 | None:intergenic |
| ATGCTGCTTCATTGTTAGCA+GGG | 0.581774 | 8_2:+60202608 | None:intergenic |
| TGTTAGCAGGGACATTCTCA+TGG | 0.582058 | 8_2:+60202620 | None:intergenic |
| TAGCATCAGAGAAAAGTTTG+TGG | 0.583867 | 8_2:-60203625 | Msa1258880:CDS |
| AAACTGGAAATCAGATCCCC+CGG | 0.593442 | 8_2:+60202540 | None:intergenic |
| GTGAATCAAGGATGCAACGG+TGG | 0.599603 | 8_2:-60202889 | Msa1258880:CDS |
| AGGGTTACATTAGAATGCAA+AGG | 0.601301 | 8_2:-60202279 | Msa1258880:CDS |
| TCTATGTGGCATAGCTATGG+AGG | 0.601740 | 8_2:-60202236 | Msa1258880:CDS |
| CAATAGCTACAGAAATCGGT+TGG | 0.603005 | 8_2:+60202566 | None:intergenic |
| CGTGGATTGTCACATGACAA+TGG | 0.604341 | 8_2:-60203383 | Msa1258880:CDS |
| CTTGTCCGAGCAAGAACTTG+TGG | 0.608838 | 8_2:-60202926 | Msa1258880:CDS |
| TCTCACAAGCAAGGTCTATG+TGG | 0.620594 | 8_2:-60202250 | Msa1258880:CDS |
| TGAATCAAGGATGCAACGGT+GGG | 0.628142 | 8_2:-60202888 | Msa1258880:CDS |
| TCTGTAGCTATTGATGCCGG+GGG | 0.632927 | 8_2:-60202556 | Msa1258880:CDS |
| TTGGCCTTGATCCTTTACCC+CGG | 0.635267 | 8_2:+60203292 | None:intergenic |
| TCCACATTCTCATACATGAA+CGG | 0.636776 | 8_2:+60203359 | None:intergenic |
| AATCATCATAGAATGTTCCG+TGG | 0.642215 | 8_2:-60203401 | Msa1258880:CDS |
| ACCGTTCATGTATGAGAATG+TGG | 0.645392 | 8_2:-60203360 | Msa1258880:CDS |
| AAAGTGAATCAAGGATGCAA+CGG | 0.646923 | 8_2:-60202892 | Msa1258880:CDS |
| AGGGCCATATCTCACAAGCA+AGG | 0.656245 | 8_2:-60202259 | Msa1258880:CDS |
| TGGACAGTGAAGAACTCTTG+GGG | 0.663115 | 8_2:-60202319 | Msa1258880:CDS |
| ATTGTGGACATGCATAACAT+TGG | 0.668124 | 8_2:+60203520 | None:intergenic |
| ATCATGGGGTAGCAATTGTG+GGG | 0.693047 | 8_2:-60202372 | Msa1258880:CDS |
| CAAGACTTCGAGTAACTGTG+TGG | 0.728098 | 8_2:+60203576 | None:intergenic |
| GGAGTATTTACTGGACACTG+TGG | 0.740210 | 8_2:-60202406 | Msa1258880:CDS |
| TGGTACTGAGCTGAATCATG+GGG | 0.741700 | 8_2:-60202386 | Msa1258880:CDS |
| GAAGATAGGTGCTGTCACCG+GGG | 0.757764 | 8_2:-60203309 | Msa1258880:CDS |
| GTTCATGTATGAGAATGTGG+AGG | 0.769545 | 8_2:-60203357 | Msa1258880:CDS |
| GTAAAGGATCAAGGCCAATG+CGG | 0.813840 | 8_2:-60203287 | Msa1258880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTAATTATATATT+AGG | + | chr8_2:60203151-60203170 | None:intergenic | 0.0% |
| !! | AAATTTATTAATTATATATT+AGG | + | chr8_2:60203151-60203170 | None:intergenic | 0.0% |
| !!! | AATTTTATTTGATTAACTTA+TGG | - | chr8_2:60203166-60203185 | Msa1258880:intron | 10.0% |
| !!! | ATTTTATTTGATTAACTTAT+GGG | - | chr8_2:60203167-60203186 | Msa1258880:intron | 10.0% |
| !!! | ATATTTTTGTAATTAAAAGT+GGG | + | chr8_2:60203447-60203466 | None:intergenic | 10.0% |
| !!! | TATATTTTTGTAATTAAAAG+TGG | + | chr8_2:60203448-60203467 | None:intergenic | 10.0% |
| !! | AATTACAAAAATATAATTAC+AGG | - | chr8_2:60203453-60203472 | Msa1258880:CDS | 10.0% |
| !! | ATTACAAAAATATAATTACA+GGG | - | chr8_2:60203454-60203473 | Msa1258880:CDS | 10.0% |
| !!! | AATTTTATTTGATTAACTTA+TGG | - | chr8_2:60203166-60203185 | Msa1258880:intron | 10.0% |
| !!! | ATTTTATTTGATTAACTTAT+GGG | - | chr8_2:60203167-60203186 | Msa1258880:intron | 10.0% |
| !!! | ATATTTTTGTAATTAAAAGT+GGG | + | chr8_2:60203447-60203466 | None:intergenic | 10.0% |
| !!! | TATATTTTTGTAATTAAAAG+TGG | + | chr8_2:60203448-60203467 | None:intergenic | 10.0% |
| !! | AATTACAAAAATATAATTAC+AGG | - | chr8_2:60203453-60203472 | Msa1258880:CDS | 10.0% |
| !! | ATTACAAAAATATAATTACA+GGG | - | chr8_2:60203454-60203473 | Msa1258880:CDS | 10.0% |
| !! | TATCTAATTTATTGGTATTG+TGG | + | chr8_2:60202380-60202399 | None:intergenic | 20.0% |
| !! | ATAAGGCTTATCTAATTTAT+TGG | + | chr8_2:60202388-60202407 | None:intergenic | 20.0% |
| !! | TTATTCAACTTAAGCTTATA+AGG | + | chr8_2:60202405-60202424 | None:intergenic | 20.0% |
| !! | ACATGACAAATTATGAATTT+AGG | - | chr8_2:60202433-60202452 | Msa1258880:intron | 20.0% |
| !! | TATCTAATTTATTGGTATTG+TGG | + | chr8_2:60202380-60202399 | None:intergenic | 20.0% |
| !! | ATAAGGCTTATCTAATTTAT+TGG | + | chr8_2:60202388-60202407 | None:intergenic | 20.0% |
| !! | TTATTCAACTTAAGCTTATA+AGG | + | chr8_2:60202405-60202424 | None:intergenic | 20.0% |
| !! | ACATGACAAATTATGAATTT+AGG | - | chr8_2:60202433-60202452 | Msa1258880:intron | 20.0% |
| ! | TATTCCTAAAATCAAAGCTA+GGG | + | chr8_2:60202205-60202224 | None:intergenic | 25.0% |
| ! | ATAATCAAATACAGACTAAG+TGG | + | chr8_2:60202747-60202766 | None:intergenic | 25.0% |
| ! | TCTGTATTTGATTATACGTT+TGG | - | chr8_2:60202752-60202771 | Msa1258880:intron | 25.0% |
| !!! | GAATTGTTTCTAACTTGTAT+AGG | - | chr8_2:60202860-60202879 | Msa1258880:CDS | 25.0% |
| ! | CAAGTGAAAATGTGTTAATT+TGG | + | chr8_2:60203206-60203225 | None:intergenic | 25.0% |
| !! | TTTTCAGATGACTTTTTGAT+TGG | + | chr8_2:60203679-60203698 | None:intergenic | 25.0% |
| ! | TATTCCTAAAATCAAAGCTA+GGG | + | chr8_2:60202205-60202224 | None:intergenic | 25.0% |
| ! | ATAATCAAATACAGACTAAG+TGG | + | chr8_2:60202747-60202766 | None:intergenic | 25.0% |
| ! | TCTGTATTTGATTATACGTT+TGG | - | chr8_2:60202752-60202771 | Msa1258880:intron | 25.0% |
| !!! | GAATTGTTTCTAACTTGTAT+AGG | - | chr8_2:60202860-60202879 | Msa1258880:CDS | 25.0% |
| ! | CAAGTGAAAATGTGTTAATT+TGG | + | chr8_2:60203206-60203225 | None:intergenic | 25.0% |
| !! | TTTTCAGATGACTTTTTGAT+TGG | + | chr8_2:60203679-60203698 | None:intergenic | 25.0% |
| TAAAATCAAAGCTAGGGATA+AGG | + | chr8_2:60202199-60202218 | None:intergenic | 30.0% | |
| !!! | TTATCCCTAGCTTTGATTTT+AGG | - | chr8_2:60202198-60202217 | Msa1258880:CDS | 30.0% |
| CTATTCCTAAAATCAAAGCT+AGG | + | chr8_2:60202206-60202225 | None:intergenic | 30.0% | |
| TTCAAGCGATTTAACTAACA+TGG | + | chr8_2:60202701-60202720 | None:intergenic | 30.0% | |
| !! | GTTCTGAAGTAGAATTGATT+TGG | - | chr8_2:60202831-60202850 | Msa1258880:CDS | 30.0% |
| ! | AACACATTTTCACTTGATGT+AGG | - | chr8_2:60203210-60203229 | Msa1258880:intron | 30.0% |
| !!! | TGATTTCCAGTTTTATTCAG+AGG | - | chr8_2:60203351-60203370 | Msa1258880:CDS | 30.0% |
| ! | GTTTTACCTCTGAATAAAAC+TGG | + | chr8_2:60203360-60203379 | None:intergenic | 30.0% |
| TGTAATTAAAAGTGGGATCA+AGG | + | chr8_2:60203440-60203459 | None:intergenic | 30.0% | |
| !! | TAATTACAGGGAGTATTTAC+TGG | - | chr8_2:60203466-60203485 | Msa1258880:CDS | 30.0% |
| CTCAAGATGGAACAAAATAT+TGG | - | chr8_2:60203542-60203561 | Msa1258880:CDS | 30.0% | |
| TAAAATCAAAGCTAGGGATA+AGG | + | chr8_2:60202199-60202218 | None:intergenic | 30.0% | |
| !!! | TTATCCCTAGCTTTGATTTT+AGG | - | chr8_2:60202198-60202217 | Msa1258880:CDS | 30.0% |
| CTATTCCTAAAATCAAAGCT+AGG | + | chr8_2:60202206-60202225 | None:intergenic | 30.0% | |
| TTCAAGCGATTTAACTAACA+TGG | + | chr8_2:60202701-60202720 | None:intergenic | 30.0% | |
| !! | GTTCTGAAGTAGAATTGATT+TGG | - | chr8_2:60202831-60202850 | Msa1258880:CDS | 30.0% |
| ! | AACACATTTTCACTTGATGT+AGG | - | chr8_2:60203210-60203229 | Msa1258880:intron | 30.0% |
| !!! | TGATTTCCAGTTTTATTCAG+AGG | - | chr8_2:60203351-60203370 | Msa1258880:CDS | 30.0% |
| ! | GTTTTACCTCTGAATAAAAC+TGG | + | chr8_2:60203360-60203379 | None:intergenic | 30.0% |
| TGTAATTAAAAGTGGGATCA+AGG | + | chr8_2:60203440-60203459 | None:intergenic | 30.0% | |
| !! | TAATTACAGGGAGTATTTAC+TGG | - | chr8_2:60203466-60203485 | Msa1258880:CDS | 30.0% |
| CTCAAGATGGAACAAAATAT+TGG | - | chr8_2:60203542-60203561 | Msa1258880:CDS | 30.0% | |
| TAGCATCAGAGAAAAGTTTG+TGG | - | chr8_2:60202256-60202275 | Msa1258880:CDS | 35.0% | |
| AGCATCAGAGAAAAGTTTGT+GGG | - | chr8_2:60202257-60202276 | Msa1258880:CDS | 35.0% | |
| ATTGTGGACATGCATAACAT+TGG | + | chr8_2:60202364-60202383 | None:intergenic | 35.0% | |
| AATCATCATAGAATGTTCCG+TGG | - | chr8_2:60202480-60202499 | Msa1258880:intron | 35.0% | |
| TCCACATTCTCATACATGAA+CGG | + | chr8_2:60202525-60202544 | None:intergenic | 35.0% | |
| ATGTTCCTTCTTCGATTGAT+TGG | - | chr8_2:60202547-60202566 | Msa1258880:CDS | 35.0% | |
| GTTTGGATCCAAAATTGATC+TGG | - | chr8_2:60202769-60202788 | Msa1258880:intron | 35.0% | |
| ! | TAACTTGTATAGGTAGTTGC+TGG | - | chr8_2:60202870-60202889 | Msa1258880:CDS | 35.0% |
| AACTTGTATAGGTAGTTGCT+GGG | - | chr8_2:60202871-60202890 | Msa1258880:CDS | 35.0% | |
| TCAACAATTGTAGCTGTTGA+AGG | - | chr8_2:60202899-60202918 | Msa1258880:CDS | 35.0% | |
| !! | CTAGTTTTCGTGTCTTGATT+TGG | + | chr8_2:60202931-60202950 | None:intergenic | 35.0% |
| AAAGTGAATCAAGGATGCAA+CGG | - | chr8_2:60202989-60203008 | Msa1258880:CDS | 35.0% | |
| ! | TTCGAGTTCATCAAGCAAAA+TGG | - | chr8_2:60203031-60203050 | Msa1258880:intron | 35.0% |
| TTATCCTTATGCTGCAAAAG+AGG | - | chr8_2:60203072-60203091 | Msa1258880:intron | 35.0% | |
| TATCCTTATGCTGCAAAAGA+GGG | - | chr8_2:60203073-60203092 | Msa1258880:intron | 35.0% | |
| GGGAACCTGTAATATACAAA+AGG | - | chr8_2:60203093-60203112 | Msa1258880:intron | 35.0% | |
| ! | GTGCACCTTTTGTATATTAC+AGG | + | chr8_2:60203101-60203120 | None:intergenic | 35.0% |
| GCATCAATAGCTACAGAAAT+CGG | + | chr8_2:60203322-60203341 | None:intergenic | 35.0% | |
| ATTTCTGTAGCTATTGATGC+CGG | - | chr8_2:60203322-60203341 | Msa1258880:CDS | 35.0% | |
| AGGGTTACATTAGAATGCAA+AGG | - | chr8_2:60203602-60203621 | Msa1258880:CDS | 35.0% | |
| GGGTTACATTAGAATGCAAA+GGG | - | chr8_2:60203603-60203622 | Msa1258880:CDS | 35.0% | |
| ! | TCGGAAGTGAACTTTTTGTT+GGG | + | chr8_2:60203702-60203721 | None:intergenic | 35.0% |
| ! | TTCGGAAGTGAACTTTTTGT+TGG | + | chr8_2:60203703-60203722 | None:intergenic | 35.0% |
| TAGCATCAGAGAAAAGTTTG+TGG | - | chr8_2:60202256-60202275 | Msa1258880:CDS | 35.0% | |
| AGCATCAGAGAAAAGTTTGT+GGG | - | chr8_2:60202257-60202276 | Msa1258880:CDS | 35.0% | |
| ATTGTGGACATGCATAACAT+TGG | + | chr8_2:60202364-60202383 | None:intergenic | 35.0% | |
| AATCATCATAGAATGTTCCG+TGG | - | chr8_2:60202480-60202499 | Msa1258880:intron | 35.0% | |
| TCCACATTCTCATACATGAA+CGG | + | chr8_2:60202525-60202544 | None:intergenic | 35.0% | |
| ATGTTCCTTCTTCGATTGAT+TGG | - | chr8_2:60202547-60202566 | Msa1258880:CDS | 35.0% | |
| GTTTGGATCCAAAATTGATC+TGG | - | chr8_2:60202769-60202788 | Msa1258880:intron | 35.0% | |
| ! | TAACTTGTATAGGTAGTTGC+TGG | - | chr8_2:60202870-60202889 | Msa1258880:CDS | 35.0% |
| AACTTGTATAGGTAGTTGCT+GGG | - | chr8_2:60202871-60202890 | Msa1258880:CDS | 35.0% | |
| TCAACAATTGTAGCTGTTGA+AGG | - | chr8_2:60202899-60202918 | Msa1258880:CDS | 35.0% | |
| !! | CTAGTTTTCGTGTCTTGATT+TGG | + | chr8_2:60202931-60202950 | None:intergenic | 35.0% |
| AAAGTGAATCAAGGATGCAA+CGG | - | chr8_2:60202989-60203008 | Msa1258880:CDS | 35.0% | |
| ! | TTCGAGTTCATCAAGCAAAA+TGG | - | chr8_2:60203031-60203050 | Msa1258880:intron | 35.0% |
| TTATCCTTATGCTGCAAAAG+AGG | - | chr8_2:60203072-60203091 | Msa1258880:intron | 35.0% | |
| TATCCTTATGCTGCAAAAGA+GGG | - | chr8_2:60203073-60203092 | Msa1258880:intron | 35.0% | |
| GGGAACCTGTAATATACAAA+AGG | - | chr8_2:60203093-60203112 | Msa1258880:intron | 35.0% | |
| ! | GTGCACCTTTTGTATATTAC+AGG | + | chr8_2:60203101-60203120 | None:intergenic | 35.0% |
| GCATCAATAGCTACAGAAAT+CGG | + | chr8_2:60203322-60203341 | None:intergenic | 35.0% | |
| ATTTCTGTAGCTATTGATGC+CGG | - | chr8_2:60203322-60203341 | Msa1258880:CDS | 35.0% | |
| AGGGTTACATTAGAATGCAA+AGG | - | chr8_2:60203602-60203621 | Msa1258880:CDS | 35.0% | |
| GGGTTACATTAGAATGCAAA+GGG | - | chr8_2:60203603-60203622 | Msa1258880:CDS | 35.0% | |
| ! | TCGGAAGTGAACTTTTTGTT+GGG | + | chr8_2:60203702-60203721 | None:intergenic | 35.0% |
| ! | TTCGGAAGTGAACTTTTTGT+TGG | + | chr8_2:60203703-60203722 | None:intergenic | 35.0% |
| ! | AGCTAAGAGCTTTGATTTCC+AGG | - | chr8_2:60202224-60202243 | Msa1258880:CDS | 40.0% |
| !! | GAGCATCTATGCTGATTCTA+AGG | - | chr8_2:60202455-60202474 | Msa1258880:intron | 40.0% |
| CATTGTCATGTGACAATCCA+CGG | + | chr8_2:60202500-60202519 | None:intergenic | 40.0% | |
| ACCGTTCATGTATGAGAATG+TGG | - | chr8_2:60202521-60202540 | Msa1258880:intron | 40.0% | |
| GTTCATGTATGAGAATGTGG+AGG | - | chr8_2:60202524-60202543 | Msa1258880:intron | 40.0% | |
| TTCCTTCTTCGATTGATTGG+AGG | - | chr8_2:60202550-60202569 | Msa1258880:CDS | 40.0% | |
| TTCCTCCAATCAATCGAAGA+AGG | + | chr8_2:60202555-60202574 | None:intergenic | 40.0% | |
| TCGATTGATTGGAGGAAGAT+AGG | - | chr8_2:60202558-60202577 | Msa1258880:CDS | 40.0% | |
| AACAAGTAAGCTTACCGCAT+TGG | + | chr8_2:60202611-60202630 | None:intergenic | 40.0% | |
| ! | CCAGTTCTCCAGATCAATTT+TGG | + | chr8_2:60202780-60202799 | None:intergenic | 40.0% |
| CCAAAATTGATCTGGAGAAC+TGG | - | chr8_2:60202777-60202796 | Msa1258880:intron | 40.0% | |
| TGCGACACTAAAGTGAATCA+AGG | - | chr8_2:60202980-60202999 | Msa1258880:CDS | 40.0% | |
| AAACCAGCAGTGTCAATTGA+TGG | - | chr8_2:60203238-60203257 | Msa1258880:intron | 40.0% | |
| ! | ATGCTGCTTCATTGTTAGCA+GGG | + | chr8_2:60203276-60203295 | None:intergenic | 40.0% |
| ! | AATGCTGCTTCATTGTTAGC+AGG | + | chr8_2:60203277-60203296 | None:intergenic | 40.0% |
| CAATAGCTACAGAAATCGGT+TGG | + | chr8_2:60203318-60203337 | None:intergenic | 40.0% | |
| TTTCTGTAGCTATTGATGCC+GGG | - | chr8_2:60203323-60203342 | Msa1258880:CDS | 40.0% | |
| AATCATGGGGTAGCAATTGT+GGG | - | chr8_2:60203508-60203527 | Msa1258880:CDS | 40.0% | |
| ATTGGACAGTGAAGAACTCT+TGG | - | chr8_2:60203560-60203579 | Msa1258880:CDS | 40.0% | |
| TTGGACAGTGAAGAACTCTT+GGG | - | chr8_2:60203561-60203580 | Msa1258880:CDS | 40.0% | |
| TAGACCTTGCTTGTGAGATA+TGG | + | chr8_2:60203629-60203648 | None:intergenic | 40.0% | |
| ! | AGCTAAGAGCTTTGATTTCC+AGG | - | chr8_2:60202224-60202243 | Msa1258880:CDS | 40.0% |
| !! | GAGCATCTATGCTGATTCTA+AGG | - | chr8_2:60202455-60202474 | Msa1258880:intron | 40.0% |
| CATTGTCATGTGACAATCCA+CGG | + | chr8_2:60202500-60202519 | None:intergenic | 40.0% | |
| ACCGTTCATGTATGAGAATG+TGG | - | chr8_2:60202521-60202540 | Msa1258880:intron | 40.0% | |
| GTTCATGTATGAGAATGTGG+AGG | - | chr8_2:60202524-60202543 | Msa1258880:intron | 40.0% | |
| TTCCTTCTTCGATTGATTGG+AGG | - | chr8_2:60202550-60202569 | Msa1258880:CDS | 40.0% | |
| TTCCTCCAATCAATCGAAGA+AGG | + | chr8_2:60202555-60202574 | None:intergenic | 40.0% | |
| TCGATTGATTGGAGGAAGAT+AGG | - | chr8_2:60202558-60202577 | Msa1258880:CDS | 40.0% | |
| AACAAGTAAGCTTACCGCAT+TGG | + | chr8_2:60202611-60202630 | None:intergenic | 40.0% | |
| ! | CCAGTTCTCCAGATCAATTT+TGG | + | chr8_2:60202780-60202799 | None:intergenic | 40.0% |
| CCAAAATTGATCTGGAGAAC+TGG | - | chr8_2:60202777-60202796 | Msa1258880:intron | 40.0% | |
| TGCGACACTAAAGTGAATCA+AGG | - | chr8_2:60202980-60202999 | Msa1258880:CDS | 40.0% | |
| AAACCAGCAGTGTCAATTGA+TGG | - | chr8_2:60203238-60203257 | Msa1258880:intron | 40.0% | |
| ! | ATGCTGCTTCATTGTTAGCA+GGG | + | chr8_2:60203276-60203295 | None:intergenic | 40.0% |
| ! | AATGCTGCTTCATTGTTAGC+AGG | + | chr8_2:60203277-60203296 | None:intergenic | 40.0% |
| CAATAGCTACAGAAATCGGT+TGG | + | chr8_2:60203318-60203337 | None:intergenic | 40.0% | |
| TTTCTGTAGCTATTGATGCC+GGG | - | chr8_2:60203323-60203342 | Msa1258880:CDS | 40.0% | |
| AATCATGGGGTAGCAATTGT+GGG | - | chr8_2:60203508-60203527 | Msa1258880:CDS | 40.0% | |
| ATTGGACAGTGAAGAACTCT+TGG | - | chr8_2:60203560-60203579 | Msa1258880:CDS | 40.0% | |
| TTGGACAGTGAAGAACTCTT+GGG | - | chr8_2:60203561-60203580 | Msa1258880:CDS | 40.0% | |
| TAGACCTTGCTTGTGAGATA+TGG | + | chr8_2:60203629-60203648 | None:intergenic | 40.0% | |
| CTGATGCTAAGTCATTCTCC+TGG | + | chr8_2:60202245-60202264 | None:intergenic | 45.0% | |
| TGTGGGATTTGTACGAGAGA+TGG | - | chr8_2:60202274-60202293 | Msa1258880:CDS | 45.0% | |
| CAAGACTTCGAGTAACTGTG+TGG | + | chr8_2:60202308-60202327 | None:intergenic | 45.0% | |
| ! | CGTGGATTGTCACATGACAA+TGG | - | chr8_2:60202498-60202517 | Msa1258880:intron | 45.0% |
| GTAAAGGATCAAGGCCAATG+CGG | - | chr8_2:60202594-60202613 | Msa1258880:CDS | 45.0% | |
| GCAATCCACAAGTTCTTGCT+CGG | + | chr8_2:60202963-60202982 | None:intergenic | 45.0% | |
| TGAATCAAGGATGCAACGGT+GGG | - | chr8_2:60202993-60203012 | Msa1258880:CDS | 45.0% | |
| ! | GTTCCCTCTTTTGCAGCATA+AGG | + | chr8_2:60203079-60203098 | None:intergenic | 45.0% |
| TGTTAGCAGGGACATTCTCA+TGG | + | chr8_2:60203264-60203283 | None:intergenic | 45.0% | |
| AGCTACAGAAATCGGTTGGT+TGG | + | chr8_2:60203314-60203333 | None:intergenic | 45.0% | |
| TTCTGTAGCTATTGATGCCG+GGG | - | chr8_2:60203324-60203343 | Msa1258880:CDS | 45.0% | |
| AAACTGGAAATCAGATCCCC+CGG | + | chr8_2:60203344-60203363 | None:intergenic | 45.0% | |
| ! | GGAGTATTTACTGGACACTG+TGG | - | chr8_2:60203475-60203494 | Msa1258880:CDS | 45.0% |
| ! | TGTGGTACTGAGCTGAATCA+TGG | - | chr8_2:60203493-60203512 | Msa1258880:CDS | 45.0% |
| ! | GTGGTACTGAGCTGAATCAT+GGG | - | chr8_2:60203494-60203513 | Msa1258880:CDS | 45.0% |
| ! | TGGTACTGAGCTGAATCATG+GGG | - | chr8_2:60203495-60203514 | Msa1258880:CDS | 45.0% |
| GAATCATGGGGTAGCAATTG+TGG | - | chr8_2:60203507-60203526 | Msa1258880:CDS | 45.0% | |
| ATCATGGGGTAGCAATTGTG+GGG | - | chr8_2:60203509-60203528 | Msa1258880:CDS | 45.0% | |
| TGGACAGTGAAGAACTCTTG+GGG | - | chr8_2:60203562-60203581 | Msa1258880:CDS | 45.0% | |
| AGAACTCTTGGGGAAGTGAA+TGG | - | chr8_2:60203572-60203591 | Msa1258880:CDS | 45.0% | |
| GAACTCTTGGGGAAGTGAAT+GGG | - | chr8_2:60203573-60203592 | Msa1258880:CDS | 45.0% | |
| AACTCTTGGGGAAGTGAATG+GGG | - | chr8_2:60203574-60203593 | Msa1258880:CDS | 45.0% | |
| TCTCACAAGCAAGGTCTATG+TGG | - | chr8_2:60203631-60203650 | Msa1258880:CDS | 45.0% | |
| AGGTCTATGTGGCATAGCTA+TGG | - | chr8_2:60203642-60203661 | Msa1258880:CDS | 45.0% | |
| TCTATGTGGCATAGCTATGG+AGG | - | chr8_2:60203645-60203664 | Msa1258880:CDS | 45.0% | |
| CTGATGCTAAGTCATTCTCC+TGG | + | chr8_2:60202245-60202264 | None:intergenic | 45.0% | |
| TGTGGGATTTGTACGAGAGA+TGG | - | chr8_2:60202274-60202293 | Msa1258880:CDS | 45.0% | |
| CAAGACTTCGAGTAACTGTG+TGG | + | chr8_2:60202308-60202327 | None:intergenic | 45.0% | |
| ! | CGTGGATTGTCACATGACAA+TGG | - | chr8_2:60202498-60202517 | Msa1258880:intron | 45.0% |
| GTAAAGGATCAAGGCCAATG+CGG | - | chr8_2:60202594-60202613 | Msa1258880:CDS | 45.0% | |
| GCAATCCACAAGTTCTTGCT+CGG | + | chr8_2:60202963-60202982 | None:intergenic | 45.0% | |
| TGAATCAAGGATGCAACGGT+GGG | - | chr8_2:60202993-60203012 | Msa1258880:CDS | 45.0% | |
| ! | GTTCCCTCTTTTGCAGCATA+AGG | + | chr8_2:60203079-60203098 | None:intergenic | 45.0% |
| TGTTAGCAGGGACATTCTCA+TGG | + | chr8_2:60203264-60203283 | None:intergenic | 45.0% | |
| AGCTACAGAAATCGGTTGGT+TGG | + | chr8_2:60203314-60203333 | None:intergenic | 45.0% | |
| TTCTGTAGCTATTGATGCCG+GGG | - | chr8_2:60203324-60203343 | Msa1258880:CDS | 45.0% | |
| AAACTGGAAATCAGATCCCC+CGG | + | chr8_2:60203344-60203363 | None:intergenic | 45.0% | |
| ! | GGAGTATTTACTGGACACTG+TGG | - | chr8_2:60203475-60203494 | Msa1258880:CDS | 45.0% |
| ! | TGTGGTACTGAGCTGAATCA+TGG | - | chr8_2:60203493-60203512 | Msa1258880:CDS | 45.0% |
| ! | GTGGTACTGAGCTGAATCAT+GGG | - | chr8_2:60203494-60203513 | Msa1258880:CDS | 45.0% |
| ! | TGGTACTGAGCTGAATCATG+GGG | - | chr8_2:60203495-60203514 | Msa1258880:CDS | 45.0% |
| GAATCATGGGGTAGCAATTG+TGG | - | chr8_2:60203507-60203526 | Msa1258880:CDS | 45.0% | |
| ATCATGGGGTAGCAATTGTG+GGG | - | chr8_2:60203509-60203528 | Msa1258880:CDS | 45.0% | |
| TGGACAGTGAAGAACTCTTG+GGG | - | chr8_2:60203562-60203581 | Msa1258880:CDS | 45.0% | |
| AGAACTCTTGGGGAAGTGAA+TGG | - | chr8_2:60203572-60203591 | Msa1258880:CDS | 45.0% | |
| GAACTCTTGGGGAAGTGAAT+GGG | - | chr8_2:60203573-60203592 | Msa1258880:CDS | 45.0% | |
| AACTCTTGGGGAAGTGAATG+GGG | - | chr8_2:60203574-60203593 | Msa1258880:CDS | 45.0% | |
| TCTCACAAGCAAGGTCTATG+TGG | - | chr8_2:60203631-60203650 | Msa1258880:CDS | 45.0% | |
| AGGTCTATGTGGCATAGCTA+TGG | - | chr8_2:60203642-60203661 | Msa1258880:CDS | 45.0% | |
| TCTATGTGGCATAGCTATGG+AGG | - | chr8_2:60203645-60203664 | Msa1258880:CDS | 45.0% | |
| ! | AGGAAGATAGGTGCTGTCAC+CGG | - | chr8_2:60202570-60202589 | Msa1258880:CDS | 50.0% |
| !! | TTGGCCTTGATCCTTTACCC+CGG | + | chr8_2:60202592-60202611 | None:intergenic | 50.0% |
| CACAAGTTCTTGCTCGGACA+AGG | + | chr8_2:60202957-60202976 | None:intergenic | 50.0% | |
| CTTGTCCGAGCAAGAACTTG+TGG | - | chr8_2:60202955-60202974 | Msa1258880:CDS | 50.0% | |
| GTGAATCAAGGATGCAACGG+TGG | - | chr8_2:60202992-60203011 | Msa1258880:CDS | 50.0% | |
| !! | AGGATGCAACGGTGGGTTAA+TGG | - | chr8_2:60203000-60203019 | Msa1258880:CDS | 50.0% |
| TGGCCATCAATTGACACTGC+TGG | + | chr8_2:60203244-60203263 | None:intergenic | 50.0% | |
| TCTGTAGCTATTGATGCCGG+GGG | - | chr8_2:60203325-60203344 | Msa1258880:CDS | 50.0% | |
| GGGTATGGAGCAACTCAAGA+TGG | - | chr8_2:60203529-60203548 | Msa1258880:CDS | 50.0% | |
| GGAAGTGAATGGGGAGAACA+GGG | - | chr8_2:60203583-60203602 | Msa1258880:CDS | 50.0% | |
| AGGGCCATATCTCACAAGCA+AGG | - | chr8_2:60203622-60203641 | Msa1258880:CDS | 50.0% | |
| ! | AGGAAGATAGGTGCTGTCAC+CGG | - | chr8_2:60202570-60202589 | Msa1258880:CDS | 50.0% |
| !! | TTGGCCTTGATCCTTTACCC+CGG | + | chr8_2:60202592-60202611 | None:intergenic | 50.0% |
| CACAAGTTCTTGCTCGGACA+AGG | + | chr8_2:60202957-60202976 | None:intergenic | 50.0% | |
| CTTGTCCGAGCAAGAACTTG+TGG | - | chr8_2:60202955-60202974 | Msa1258880:CDS | 50.0% | |
| GTGAATCAAGGATGCAACGG+TGG | - | chr8_2:60202992-60203011 | Msa1258880:CDS | 50.0% | |
| !! | AGGATGCAACGGTGGGTTAA+TGG | - | chr8_2:60203000-60203019 | Msa1258880:CDS | 50.0% |
| TGGCCATCAATTGACACTGC+TGG | + | chr8_2:60203244-60203263 | None:intergenic | 50.0% | |
| TCTGTAGCTATTGATGCCGG+GGG | - | chr8_2:60203325-60203344 | Msa1258880:CDS | 50.0% | |
| GGGTATGGAGCAACTCAAGA+TGG | - | chr8_2:60203529-60203548 | Msa1258880:CDS | 50.0% | |
| GGAAGTGAATGGGGAGAACA+GGG | - | chr8_2:60203583-60203602 | Msa1258880:CDS | 50.0% | |
| AGGGCCATATCTCACAAGCA+AGG | - | chr8_2:60203622-60203641 | Msa1258880:CDS | 50.0% | |
| ! | GGAAGATAGGTGCTGTCACC+GGG | - | chr8_2:60202571-60202590 | Msa1258880:CDS | 55.0% |
| ! | GAAGATAGGTGCTGTCACCG+GGG | - | chr8_2:60202572-60202591 | Msa1258880:CDS | 55.0% |
| GTCACCGGGGTAAAGGATCA+AGG | - | chr8_2:60202585-60202604 | Msa1258880:CDS | 55.0% | |
| GGGGTAGCAATTGTGGGGTA+TGG | - | chr8_2:60203514-60203533 | Msa1258880:CDS | 55.0% | |
| GGGAAGTGAATGGGGAGAAC+AGG | - | chr8_2:60203582-60203601 | Msa1258880:CDS | 55.0% | |
| ! | GGAAGATAGGTGCTGTCACC+GGG | - | chr8_2:60202571-60202590 | Msa1258880:CDS | 55.0% |
| ! | GAAGATAGGTGCTGTCACCG+GGG | - | chr8_2:60202572-60202591 | Msa1258880:CDS | 55.0% |
| GTCACCGGGGTAAAGGATCA+AGG | - | chr8_2:60202585-60202604 | Msa1258880:CDS | 55.0% | |
| GGGGTAGCAATTGTGGGGTA+TGG | - | chr8_2:60203514-60203533 | Msa1258880:CDS | 55.0% | |
| GGGAAGTGAATGGGGAGAAC+AGG | - | chr8_2:60203582-60203601 | Msa1258880:CDS | 55.0% | |
| ! | AGGTGCTGTCACCGGGGTAA+AGG | - | chr8_2:60202578-60202597 | Msa1258880:CDS | 60.0% |
| ! | AGGTGCTGTCACCGGGGTAA+AGG | - | chr8_2:60202578-60202597 | Msa1258880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 60202168 | 60203735 | 60202168 | ID=Msa1258880;Name=Msa1258880 |
| chr8_2 | mRNA | 60202168 | 60203735 | 60202168 | ID=Msa1258880-mRNA-1;Parent=Msa1258880;Name=Msa1258880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.5|1|1|1|4|0|360 |
| chr8_2 | exon | 60203288 | 60203735 | 60203288 | ID=Msa1258880-mRNA-1:exon:18907;Parent=Msa1258880-mRNA-1 |
| chr8_2 | exon | 60202789 | 60203021 | 60202789 | ID=Msa1258880-mRNA-1:exon:18906;Parent=Msa1258880-mRNA-1 |
| chr8_2 | exon | 60202531 | 60202671 | 60202531 | ID=Msa1258880-mRNA-1:exon:18905;Parent=Msa1258880-mRNA-1 |
| chr8_2 | exon | 60202168 | 60202428 | 60202168 | ID=Msa1258880-mRNA-1:exon:18904;Parent=Msa1258880-mRNA-1 |
| chr8_2 | CDS | 60203288 | 60203735 | 60203288 | ID=Msa1258880-mRNA-1:cds;Parent=Msa1258880-mRNA-1 |
| chr8_2 | CDS | 60202789 | 60203021 | 60202789 | ID=Msa1258880-mRNA-1:cds;Parent=Msa1258880-mRNA-1 |
| chr8_2 | CDS | 60202531 | 60202671 | 60202531 | ID=Msa1258880-mRNA-1:cds;Parent=Msa1258880-mRNA-1 |
| chr8_2 | CDS | 60202168 | 60202428 | 60202168 | ID=Msa1258880-mRNA-1:cds;Parent=Msa1258880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
