AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334410 MtrunA17_Chr4g0070561 96.885 321 10 0 4 324 81 401 0.0 653
Msa1334410 MtrunA17_Chr5g0394751 54.870 308 120 3 4 311 70 358 3.62e-121 352
Msa1334410 MtrunA17_Chr5g0394771 54.870 308 120 3 4 311 102 390 3.75e-121 353
Msa1334410 MtrunA17_Chr5g0394891 54.870 308 126 3 4 311 74 368 1.75e-119 348
Msa1334410 MtrunA17_Chr5g0394861 55.016 309 124 4 4 311 76 370 1.01e-118 347
Msa1334410 MtrunA17_Chr5g0394841 53.247 308 131 3 4 311 76 370 2.89e-116 340
Msa1334410 MtrunA17_Chr5g0394811 55.161 310 122 5 4 311 183 477 3.35e-116 344
Msa1334410 MtrunA17_Chr5g0394811 38.614 101 42 4 4 85 57 156 5.90e-13 69.3
Msa1334410 MtrunA17_Chr5g0395841 54.221 308 128 4 4 311 76 370 2.22e-115 338
Msa1334410 MtrunA17_Chr3g0144001 54.045 309 123 5 4 311 72 362 3.97e-111 327
Msa1334410 MtrunA17_Chr5g0394801 46.970 198 67 1 107 304 26 185 8.92e-57 184
Msa1334410 MtrunA17_Chr5g0394791 49.038 104 43 3 6 108 75 169 6.21e-22 91.7
Msa1334410 MtrunA17_Chr3g0130471 66.667 42 14 0 126 167 1 42 3.74e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334410 AT2G06050.2 74.121 313 77 2 4 312 74 386 3.67e-175 491
Msa1334410 AT2G06050.1 74.121 313 77 2 4 312 74 386 3.67e-175 491
Msa1334410 AT2G06050.3 74.121 313 77 2 4 312 74 386 3.67e-175 491
Msa1334410 AT1G76690.1 52.597 308 133 3 4 311 76 370 6.42e-115 337
Msa1334410 AT1G76680.1 52.459 305 132 3 7 311 77 368 2.93e-112 330
Msa1334410 AT1G76680.2 48.485 330 132 4 7 311 77 393 2.18e-106 316
Msa1334410 AT1G09400.2 50.704 284 121 3 7 290 1 265 6.22e-100 295
Msa1334410 AT1G09400.1 49.827 289 126 3 2 290 55 324 1.72e-99 296
Msa1334410 AT1G17990.2 51.942 206 91 3 4 209 63 260 2.11e-72 225
Msa1334410 AT1G17990.1 51.942 206 91 3 4 209 71 268 2.65e-72 225
Msa1334410 AT1G18020.1 51.942 206 91 3 4 209 71 268 2.65e-72 225

Find 92 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAATCCTTGACTATTTC+TGG 0.074699 8_4:+54830520 None:intergenic
GTGGTTCGGGCCGTTGTTTC+TGG 0.111017 8_4:-54830154 Msa1334410:CDS
TACACACAGGATCCTGTTAT+TGG 0.238161 8_4:-54829716 Msa1334410:CDS
CAAAACATTCTCTTAAGATT+TGG 0.238823 8_4:+54829560 None:intergenic
CGGGCCGTTGTTTCTGGTAT+TGG 0.254686 8_4:-54830148 Msa1334410:CDS
CAACCTCGATATACAGCTTA+TGG 0.287602 8_4:-54829974 Msa1334410:CDS
TTAAACCTTAAAACCAAATC+TGG 0.303799 8_4:+54829779 None:intergenic
TCGATGCAGGTTCTTAATTC+AGG 0.309680 8_4:-54830176 Msa1334410:CDS
GGTTCTTAATTCAGGTGGTT+CGG 0.310782 8_4:-54830168 Msa1334410:CDS
TTTCATCTCTAATCCAGATT+TGG 0.311746 8_4:-54829792 Msa1334410:CDS
GATTCTGATCCACTTGGATT+AGG 0.315458 8_4:-54830070 Msa1334410:CDS
GGGTTTGGTTGTGGATGAAA+TGG 0.321666 8_4:+54830627 None:intergenic
CTCTTGAGTCTCATTTCCTT+TGG 0.330899 8_4:+54829670 None:intergenic
CCACCTCTCTAGAAGGGGTT+TGG 0.330917 8_4:+54830612 None:intergenic
GTTCTTAATTCAGGTGGTTC+GGG 0.333795 8_4:-54830167 Msa1334410:CDS
CTCTAGAAGGGGTTTGGTTG+TGG 0.342961 8_4:+54830618 None:intergenic
TGTTCCTCTGAATAAATTCC+AGG 0.349073 8_4:+54830950 None:intergenic
CTCCTCTGAACAAGTATAAC+AGG 0.362982 8_4:-54829748 Msa1334410:CDS
GTTGGTCGTGCATCCCATTC+TGG 0.363613 8_4:-54830854 Msa1334410:intron
TGTGCAGTGGTGGATATAAT+AGG 0.370705 8_4:-54829874 Msa1334410:CDS
GTGGTAAGCGCTCGAGGCTC+CGG 0.373825 8_4:+54830553 None:intergenic
GGTGGATATAATAGGAAGTT+AGG 0.374612 8_4:-54829866 Msa1334410:CDS
AGCTCAAGGTGATGCTGATT+TGG 0.377196 8_4:-54829831 Msa1334410:CDS
GAATTCTCCACCTCTCTAGA+AGG 0.384447 8_4:+54830605 None:intergenic
ATTGATCAATTCTTGAAAGA+TGG 0.389055 8_4:-54830241 Msa1334410:CDS
CGCAGGTTTCCCCATGTACC+TGG 0.393784 8_4:-54830968 Msa1334410:intron
TTCGTACAACAAAACCAAAA+TGG 0.405006 8_4:+54829595 None:intergenic
TAATCGGTGTAGCCAATAAC+AGG 0.415841 8_4:+54829704 None:intergenic
GAACCTAAGAAAAGCTTATG+AGG 0.420831 8_4:-54829906 Msa1334410:CDS
GATGCTGATTTGGTATCATT+TGG 0.426648 8_4:-54829821 Msa1334410:CDS
CTGAATAAATTCCAGGTACA+TGG 0.427423 8_4:+54830957 None:intergenic
GCATCATTGTGATCAATTGC+TGG 0.434877 8_4:+54830097 None:intergenic
AATGATCGAACAGACGAGTA+TGG 0.441181 8_4:-54830214 Msa1334410:CDS
TTTGGTGAGGAAAGGATAAT+CGG 0.449437 8_4:+54829688 None:intergenic
GCTATTAATGCGATTCGAGC+AGG 0.471945 8_4:-54830490 Msa1334410:intron
TTGATCAATTCTTGAAAGAT+GGG 0.478672 8_4:-54830240 Msa1334410:CDS
CTCAAGCCAGATGGTTCCTA+TGG 0.479424 8_4:-54830583 Msa1334410:CDS
ACAAAAGATAATGCTGCCTT+TGG 0.485408 8_4:+54830889 None:intergenic
AGGTTGAGTAACATGAAGAT+AGG 0.492670 8_4:+54829991 None:intergenic
GAAACTGAGGTTACCAGAAT+GGG 0.497238 8_4:+54830841 None:intergenic
AGGCTCCGGGTATGCGCCAT+AGG 0.499161 8_4:+54830567 None:intergenic
GGTTTGGTTGTGGATGAAAT+GGG 0.499316 8_4:+54830628 None:intergenic
TTGATGGAGTCGAAATTCAC+GGG 0.503324 8_4:-54830279 Msa1334410:CDS
CATCATTGTGATCAATTGCT+GGG 0.505996 8_4:+54830098 None:intergenic
TGAAACTGAGGTTACCAGAA+TGG 0.512235 8_4:+54830840 None:intergenic
TTTGATGGAGTCGAAATTCA+CGG 0.512397 8_4:-54830280 Msa1334410:CDS
TGGTAAGCGCTCGAGGCTCC+GGG 0.517375 8_4:+54830554 None:intergenic
TCATTTCCTTTGGTGAGGAA+AGG 0.518047 8_4:+54829680 None:intergenic
GAATCGCATTAATAGCTGAT+TGG 0.525902 8_4:+54830497 None:intergenic
GCTATTGATTCTGATCCACT+TGG 0.530394 8_4:-54830076 Msa1334410:CDS
TATGCGCCATAGGAACCATC+TGG 0.531081 8_4:+54830577 None:intergenic
GTCGAAATTCACGGGGCACA+CGG 0.533112 8_4:-54830271 Msa1334410:CDS
GAGTCTCATTTCCTTTGGTG+AGG 0.533954 8_4:+54829675 None:intergenic
TTCCTGTTATACTTGTTCAG+AGG 0.544474 8_4:+54829746 None:intergenic
AATTCTCCACCTCTCTAGAA+GGG 0.550426 8_4:+54830606 None:intergenic
TCGAAATTCACGGGGCACAC+GGG 0.550944 8_4:-54830270 Msa1334410:CDS
TGAATAAATTCCAGGTACAT+GGG 0.553359 8_4:+54830958 None:intergenic
TGGTTCCTATGGCGCATACC+CGG 0.554696 8_4:-54830572 Msa1334410:CDS
GTATGACAAGGAAGAAGAAG+AGG 0.555686 8_4:-54829942 Msa1334410:CDS
GAAATGGGTGCAGCACCACC+AGG 0.555752 8_4:+54830643 None:intergenic
CAGAGGAACAAGTGGAGGCA+TGG 0.561445 8_4:-54830937 Msa1334410:CDS
GATCACTTGAAAATCGATGC+AGG 0.580483 8_4:-54830189 Msa1334410:CDS
ATGCAGGTTCTTAATTCAGG+TGG 0.588415 8_4:-54830173 Msa1334410:CDS
TCAGAAGTGGTAAGCGCTCG+AGG 0.590830 8_4:+54830547 None:intergenic
ATATAATAGGAAGTTAGGAA+TGG 0.592051 8_4:-54829861 Msa1334410:CDS
GGAATGGAAGCTGTAGCTCA+AGG 0.592444 8_4:-54829845 Msa1334410:CDS
CCAAACCCCTTCTAGAGAGG+TGG 0.592960 8_4:-54830612 Msa1334410:CDS
TATTTCTGGTATCTCAGAAG+TGG 0.602504 8_4:+54830534 None:intergenic
GATTATCCTTTCCTCACCAA+AGG 0.604147 8_4:-54829686 Msa1334410:CDS
GGAACATTCATGTGCAGTGG+TGG 0.609749 8_4:-54829884 Msa1334410:CDS
TTATTCAGAGGAACAAGTGG+AGG 0.610128 8_4:-54830942 Msa1334410:CDS
AATTTATTCAGAGGAACAAG+TGG 0.610952 8_4:-54830945 Msa1334410:CDS
TTTCCATAAGCTGTATATCG+AGG 0.611276 8_4:+54829971 None:intergenic
AAGAAGAGGCTCATTTGATG+AGG 0.613862 8_4:-54829928 Msa1334410:CDS
CAACCAAACCCCTTCTAGAG+AGG 0.615926 8_4:-54830615 Msa1334410:CDS
ATTCTCCACCTCTCTAGAAG+GGG 0.617495 8_4:+54830607 None:intergenic
AACCTAAGAAAAGCTTATGA+GGG 0.618035 8_4:-54829905 Msa1334410:CDS
TGGAGAATTCTCAAGCCAGA+TGG 0.619198 8_4:-54830592 Msa1334410:CDS
GGTATTGGAGCTGAAAGAGT+TGG 0.624730 8_4:-54830133 Msa1334410:CDS
GAATAAATTCCAGGTACATG+GGG 0.626230 8_4:+54830959 None:intergenic
ACTGCTAAGCCTAATCCAAG+TGG 0.645958 8_4:+54830061 None:intergenic
AGCTCCAATACCAGAAACAA+CGG 0.648152 8_4:+54830144 None:intergenic
TGTGAAGCAGTGTATCAGCC+TGG 0.649524 8_4:-54830661 Msa1334410:intron
GTGGATGCTGCTCATGCCAA+AGG 0.652152 8_4:-54830905 Msa1334410:CDS
GATCGAACAGACGAGTATGG+TGG 0.652328 8_4:-54830211 Msa1334410:CDS
TGAGATACCAGAAATAGTCA+AGG 0.658712 8_4:-54830527 Msa1334410:CDS
TGTACCTGGAATTTATTCAG+AGG 0.660053 8_4:-54830954 Msa1334410:CDS
ATCATTGTGATCAATTGCTG+GGG 0.663260 8_4:+54830099 None:intergenic
GGAGGCATGGAGAAATGTCG+TGG 0.680628 8_4:-54830924 Msa1334410:CDS
GAGGGAACATTCATGTGCAG+TGG 0.698747 8_4:-54829887 Msa1334410:CDS
TGATGGAGTCGAAATTCACG+GGG 0.717446 8_4:-54830278 Msa1334410:CDS
GAAGCAGTGTATCAGCCTGG+TGG 0.735693 8_4:-54830658 Msa1334410:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTACCATTT+TGG - chr8_4:54830935-54830954 Msa1334410:CDS 10.0%
!!! TTTTTTTTTTTTTACCATTT+TGG - chr8_4:54830935-54830954 Msa1334410:CDS 10.0%
! TTGTAATATAGGGAAATGTT+TGG - chr8_4:54829553-54829572 Msa1334410:three_prime_UTR 25.0%
! TTCACAATTAAATCATTGAG+TGG + chr8_4:54829869-54829888 None:intergenic 25.0%
! TATTTGTTTACATCTCTTCA+AGG - chr8_4:54830082-54830101 Msa1334410:CDS 25.0%
! CTCACAAACATAAAATAGTA+AGG + chr8_4:54830122-54830141 None:intergenic 25.0%
! ATTGATCAATTCTTGAAAGA+TGG - chr8_4:54830303-54830322 Msa1334410:intron 25.0%
! TTGATCAATTCTTGAAAGAT+GGG - chr8_4:54830304-54830323 Msa1334410:intron 25.0%
! ATATAATAGGAAGTTAGGAA+TGG - chr8_4:54830683-54830702 Msa1334410:intron 25.0%
! TTAAACCTTAAAACCAAATC+TGG + chr8_4:54830768-54830787 None:intergenic 25.0%
! CAAAACATTCTCTTAAGATT+TGG + chr8_4:54830987-54831006 None:intergenic 25.0%
! TTGTAATATAGGGAAATGTT+TGG - chr8_4:54829553-54829572 Msa1334410:three_prime_UTR 25.0%
! TTCACAATTAAATCATTGAG+TGG + chr8_4:54829869-54829888 None:intergenic 25.0%
! TATTTGTTTACATCTCTTCA+AGG - chr8_4:54830082-54830101 Msa1334410:CDS 25.0%
! CTCACAAACATAAAATAGTA+AGG + chr8_4:54830122-54830141 None:intergenic 25.0%
! ATTGATCAATTCTTGAAAGA+TGG - chr8_4:54830303-54830322 Msa1334410:intron 25.0%
! TTGATCAATTCTTGAAAGAT+GGG - chr8_4:54830304-54830323 Msa1334410:intron 25.0%
! ATATAATAGGAAGTTAGGAA+TGG - chr8_4:54830683-54830702 Msa1334410:intron 25.0%
! TTAAACCTTAAAACCAAATC+TGG + chr8_4:54830768-54830787 None:intergenic 25.0%
! CAAAACATTCTCTTAAGATT+TGG + chr8_4:54830987-54831006 None:intergenic 25.0%
TGAATAAATTCCAGGTACAT+GGG + chr8_4:54829589-54829608 None:intergenic 30.0%
AATTTATTCAGAGGAACAAG+TGG - chr8_4:54829599-54829618 Msa1334410:three_prime_UTR 30.0%
! GCATTATCTTTTGTCAGTTA+TGG - chr8_4:54829664-54829683 Msa1334410:CDS 30.0%
! GTTTTCAATGCAGTTCATTA+AGG + chr8_4:54829756-54829775 None:intergenic 30.0%
AACCTAAGAAAAGCTTATGA+GGG - chr8_4:54830639-54830658 Msa1334410:CDS 30.0%
TTTCATCTCTAATCCAGATT+TGG - chr8_4:54830752-54830771 Msa1334410:intron 30.0%
!!! CTAATCCAGATTTGGTTTTA+AGG - chr8_4:54830760-54830779 Msa1334410:intron 30.0%
GAAGGAAAAACAACAATCAA+AGG + chr8_4:54830911-54830930 None:intergenic 30.0%
TTCGTACAACAAAACCAAAA+TGG + chr8_4:54830952-54830971 None:intergenic 30.0%
TGAATAAATTCCAGGTACAT+GGG + chr8_4:54829589-54829608 None:intergenic 30.0%
AATTTATTCAGAGGAACAAG+TGG - chr8_4:54829599-54829618 Msa1334410:three_prime_UTR 30.0%
! GCATTATCTTTTGTCAGTTA+TGG - chr8_4:54829664-54829683 Msa1334410:CDS 30.0%
! GTTTTCAATGCAGTTCATTA+AGG + chr8_4:54829756-54829775 None:intergenic 30.0%
AACCTAAGAAAAGCTTATGA+GGG - chr8_4:54830639-54830658 Msa1334410:CDS 30.0%
TTTCATCTCTAATCCAGATT+TGG - chr8_4:54830752-54830771 Msa1334410:intron 30.0%
!!! CTAATCCAGATTTGGTTTTA+AGG - chr8_4:54830760-54830779 Msa1334410:intron 30.0%
GAAGGAAAAACAACAATCAA+AGG + chr8_4:54830911-54830930 None:intergenic 30.0%
TTCGTACAACAAAACCAAAA+TGG + chr8_4:54830952-54830971 None:intergenic 30.0%
GAATAAATTCCAGGTACATG+GGG + chr8_4:54829588-54829607 None:intergenic 35.0%
CTGAATAAATTCCAGGTACA+TGG + chr8_4:54829590-54829609 None:intergenic 35.0%
TGTACCTGGAATTTATTCAG+AGG - chr8_4:54829590-54829609 Msa1334410:three_prime_UTR 35.0%
TGTTCCTCTGAATAAATTCC+AGG + chr8_4:54829597-54829616 None:intergenic 35.0%
ACAAAAGATAATGCTGCCTT+TGG + chr8_4:54829658-54829677 None:intergenic 35.0%
! TTTTGTCAGTTATGGCATGT+TGG - chr8_4:54829672-54829691 Msa1334410:CDS 35.0%
! CATTTAGGATAGTGAAACTG+AGG + chr8_4:54829719-54829738 None:intergenic 35.0%
! GATGAACTTGTGAAGCATTT+AGG + chr8_4:54829734-54829753 None:intergenic 35.0%
!! TATTTCTGGTATCTCAGAAG+TGG + chr8_4:54830013-54830032 None:intergenic 35.0%
TGAGATACCAGAAATAGTCA+AGG - chr8_4:54830017-54830036 Msa1334410:CDS 35.0%
CGATAATCCTTGACTATTTC+TGG + chr8_4:54830027-54830046 None:intergenic 35.0%
GAATCGCATTAATAGCTGAT+TGG + chr8_4:54830050-54830069 None:intergenic 35.0%
ATGAAATGAGACGTACATAC+AGG - chr8_4:54830240-54830259 Msa1334410:CDS 35.0%
TTTGATGGAGTCGAAATTCA+CGG - chr8_4:54830264-54830283 Msa1334410:CDS 35.0%
ATCATTGTGATCAATTGCTG+GGG + chr8_4:54830448-54830467 None:intergenic 35.0%
CATCATTGTGATCAATTGCT+GGG + chr8_4:54830449-54830468 None:intergenic 35.0%
AACAATCTCCAAAAAGAGCT+TGG - chr8_4:54830519-54830538 Msa1334410:CDS 35.0%
! GTTTTCTACCAAGCTCTTTT+TGG + chr8_4:54830530-54830549 None:intergenic 35.0%
AGGTTGAGTAACATGAAGAT+AGG + chr8_4:54830556-54830575 None:intergenic 35.0%
TTTCCATAAGCTGTATATCG+AGG + chr8_4:54830576-54830595 None:intergenic 35.0%
TGGAAAAACTGAGTATGACA+AGG - chr8_4:54830590-54830609 Msa1334410:CDS 35.0%
GAACCTAAGAAAAGCTTATG+AGG - chr8_4:54830638-54830657 Msa1334410:CDS 35.0%
! TTCCCTCATAAGCTTTTCTT+AGG + chr8_4:54830644-54830663 None:intergenic 35.0%
GGTGGATATAATAGGAAGTT+AGG - chr8_4:54830678-54830697 Msa1334410:intron 35.0%
!! GATGCTGATTTGGTATCATT+TGG - chr8_4:54830723-54830742 Msa1334410:intron 35.0%
TTCCTGTTATACTTGTTCAG+AGG + chr8_4:54830801-54830820 None:intergenic 35.0%
TTTGGTGAGGAAAGGATAAT+CGG + chr8_4:54830859-54830878 None:intergenic 35.0%
!!! GGTTTTGTTGTACGAACAAT+TGG - chr8_4:54830956-54830975 Msa1334410:CDS 35.0%
GAATAAATTCCAGGTACATG+GGG + chr8_4:54829588-54829607 None:intergenic 35.0%
CTGAATAAATTCCAGGTACA+TGG + chr8_4:54829590-54829609 None:intergenic 35.0%
TGTACCTGGAATTTATTCAG+AGG - chr8_4:54829590-54829609 Msa1334410:three_prime_UTR 35.0%
TGTTCCTCTGAATAAATTCC+AGG + chr8_4:54829597-54829616 None:intergenic 35.0%
ACAAAAGATAATGCTGCCTT+TGG + chr8_4:54829658-54829677 None:intergenic 35.0%
! TTTTGTCAGTTATGGCATGT+TGG - chr8_4:54829672-54829691 Msa1334410:CDS 35.0%
! CATTTAGGATAGTGAAACTG+AGG + chr8_4:54829719-54829738 None:intergenic 35.0%
! GATGAACTTGTGAAGCATTT+AGG + chr8_4:54829734-54829753 None:intergenic 35.0%
!! TATTTCTGGTATCTCAGAAG+TGG + chr8_4:54830013-54830032 None:intergenic 35.0%
TGAGATACCAGAAATAGTCA+AGG - chr8_4:54830017-54830036 Msa1334410:CDS 35.0%
CGATAATCCTTGACTATTTC+TGG + chr8_4:54830027-54830046 None:intergenic 35.0%
GAATCGCATTAATAGCTGAT+TGG + chr8_4:54830050-54830069 None:intergenic 35.0%
ATGAAATGAGACGTACATAC+AGG - chr8_4:54830240-54830259 Msa1334410:CDS 35.0%
TTTGATGGAGTCGAAATTCA+CGG - chr8_4:54830264-54830283 Msa1334410:CDS 35.0%
ATCATTGTGATCAATTGCTG+GGG + chr8_4:54830448-54830467 None:intergenic 35.0%
CATCATTGTGATCAATTGCT+GGG + chr8_4:54830449-54830468 None:intergenic 35.0%
AACAATCTCCAAAAAGAGCT+TGG - chr8_4:54830519-54830538 Msa1334410:CDS 35.0%
! GTTTTCTACCAAGCTCTTTT+TGG + chr8_4:54830530-54830549 None:intergenic 35.0%
AGGTTGAGTAACATGAAGAT+AGG + chr8_4:54830556-54830575 None:intergenic 35.0%
TTTCCATAAGCTGTATATCG+AGG + chr8_4:54830576-54830595 None:intergenic 35.0%
TGGAAAAACTGAGTATGACA+AGG - chr8_4:54830590-54830609 Msa1334410:CDS 35.0%
GAACCTAAGAAAAGCTTATG+AGG - chr8_4:54830638-54830657 Msa1334410:CDS 35.0%
! TTCCCTCATAAGCTTTTCTT+AGG + chr8_4:54830644-54830663 None:intergenic 35.0%
GGTGGATATAATAGGAAGTT+AGG - chr8_4:54830678-54830697 Msa1334410:intron 35.0%
!! GATGCTGATTTGGTATCATT+TGG - chr8_4:54830723-54830742 Msa1334410:intron 35.0%
TTCCTGTTATACTTGTTCAG+AGG + chr8_4:54830801-54830820 None:intergenic 35.0%
TTTGGTGAGGAAAGGATAAT+CGG + chr8_4:54830859-54830878 None:intergenic 35.0%
!!! GGTTTTGTTGTACGAACAAT+TGG - chr8_4:54830956-54830975 Msa1334410:CDS 35.0%
TTATTCAGAGGAACAAGTGG+AGG - chr8_4:54829602-54829621 Msa1334410:three_prime_UTR 40.0%
GAAACTGAGGTTACCAGAAT+GGG + chr8_4:54829706-54829725 None:intergenic 40.0%
TGAAACTGAGGTTACCAGAA+TGG + chr8_4:54829707-54829726 None:intergenic 40.0%
! GGTTTGGTTGTGGATGAAAT+GGG + chr8_4:54829919-54829938 None:intergenic 40.0%
! AATTCTCCACCTCTCTAGAA+GGG + chr8_4:54829941-54829960 None:intergenic 40.0%
!! GACGTACATACAGGTTTTGA+TGG - chr8_4:54830249-54830268 Msa1334410:CDS 40.0%
TTGATGGAGTCGAAATTCAC+GGG - chr8_4:54830265-54830284 Msa1334410:CDS 40.0%
AATGATCGAACAGACGAGTA+TGG - chr8_4:54830330-54830349 Msa1334410:intron 40.0%
GATCACTTGAAAATCGATGC+AGG - chr8_4:54830355-54830374 Msa1334410:intron 40.0%
TCGATGCAGGTTCTTAATTC+AGG - chr8_4:54830368-54830387 Msa1334410:intron 40.0%
ATGCAGGTTCTTAATTCAGG+TGG - chr8_4:54830371-54830390 Msa1334410:intron 40.0%
GGTTCTTAATTCAGGTGGTT+CGG - chr8_4:54830376-54830395 Msa1334410:intron 40.0%
GTTCTTAATTCAGGTGGTTC+GGG - chr8_4:54830377-54830396 Msa1334410:intron 40.0%
AGCTCCAATACCAGAAACAA+CGG + chr8_4:54830403-54830422 None:intergenic 40.0%
GCATCATTGTGATCAATTGC+TGG + chr8_4:54830450-54830469 None:intergenic 40.0%
!! GCTATTGATTCTGATCCACT+TGG - chr8_4:54830468-54830487 Msa1334410:intron 40.0%
GATTCTGATCCACTTGGATT+AGG - chr8_4:54830474-54830493 Msa1334410:intron 40.0%
CAACCTCGATATACAGCTTA+TGG - chr8_4:54830570-54830589 Msa1334410:CDS 40.0%
GTATGACAAGGAAGAAGAAG+AGG - chr8_4:54830602-54830621 Msa1334410:CDS 40.0%
AAGAAGAGGCTCATTTGATG+AGG - chr8_4:54830616-54830635 Msa1334410:CDS 40.0%
!! TGTGCAGTGGTGGATATAAT+AGG - chr8_4:54830670-54830689 Msa1334410:intron 40.0%
CTCCTCTGAACAAGTATAAC+AGG - chr8_4:54830796-54830815 Msa1334410:intron 40.0%
! CAGGAAGACATTTTACACAC+AGG - chr8_4:54830815-54830834 Msa1334410:intron 40.0%
TACACACAGGATCCTGTTAT+TGG - chr8_4:54830828-54830847 Msa1334410:intron 40.0%
TAATCGGTGTAGCCAATAAC+AGG + chr8_4:54830843-54830862 None:intergenic 40.0%
GATTATCCTTTCCTCACCAA+AGG - chr8_4:54830858-54830877 Msa1334410:CDS 40.0%
TCATTTCCTTTGGTGAGGAA+AGG + chr8_4:54830867-54830886 None:intergenic 40.0%
CTCTTGAGTCTCATTTCCTT+TGG + chr8_4:54830877-54830896 None:intergenic 40.0%
TTATTCAGAGGAACAAGTGG+AGG - chr8_4:54829602-54829621 Msa1334410:three_prime_UTR 40.0%
GAAACTGAGGTTACCAGAAT+GGG + chr8_4:54829706-54829725 None:intergenic 40.0%
TGAAACTGAGGTTACCAGAA+TGG + chr8_4:54829707-54829726 None:intergenic 40.0%
! GGTTTGGTTGTGGATGAAAT+GGG + chr8_4:54829919-54829938 None:intergenic 40.0%
! AATTCTCCACCTCTCTAGAA+GGG + chr8_4:54829941-54829960 None:intergenic 40.0%
!! GACGTACATACAGGTTTTGA+TGG - chr8_4:54830249-54830268 Msa1334410:CDS 40.0%
TTGATGGAGTCGAAATTCAC+GGG - chr8_4:54830265-54830284 Msa1334410:CDS 40.0%
AATGATCGAACAGACGAGTA+TGG - chr8_4:54830330-54830349 Msa1334410:intron 40.0%
GATCACTTGAAAATCGATGC+AGG - chr8_4:54830355-54830374 Msa1334410:intron 40.0%
TCGATGCAGGTTCTTAATTC+AGG - chr8_4:54830368-54830387 Msa1334410:intron 40.0%
ATGCAGGTTCTTAATTCAGG+TGG - chr8_4:54830371-54830390 Msa1334410:intron 40.0%
GGTTCTTAATTCAGGTGGTT+CGG - chr8_4:54830376-54830395 Msa1334410:intron 40.0%
GTTCTTAATTCAGGTGGTTC+GGG - chr8_4:54830377-54830396 Msa1334410:intron 40.0%
AGCTCCAATACCAGAAACAA+CGG + chr8_4:54830403-54830422 None:intergenic 40.0%
GCATCATTGTGATCAATTGC+TGG + chr8_4:54830450-54830469 None:intergenic 40.0%
!! GCTATTGATTCTGATCCACT+TGG - chr8_4:54830468-54830487 Msa1334410:intron 40.0%
GATTCTGATCCACTTGGATT+AGG - chr8_4:54830474-54830493 Msa1334410:intron 40.0%
CAACCTCGATATACAGCTTA+TGG - chr8_4:54830570-54830589 Msa1334410:CDS 40.0%
GTATGACAAGGAAGAAGAAG+AGG - chr8_4:54830602-54830621 Msa1334410:CDS 40.0%
AAGAAGAGGCTCATTTGATG+AGG - chr8_4:54830616-54830635 Msa1334410:CDS 40.0%
!! TGTGCAGTGGTGGATATAAT+AGG - chr8_4:54830670-54830689 Msa1334410:intron 40.0%
CTCCTCTGAACAAGTATAAC+AGG - chr8_4:54830796-54830815 Msa1334410:intron 40.0%
! CAGGAAGACATTTTACACAC+AGG - chr8_4:54830815-54830834 Msa1334410:intron 40.0%
TACACACAGGATCCTGTTAT+TGG - chr8_4:54830828-54830847 Msa1334410:intron 40.0%
TAATCGGTGTAGCCAATAAC+AGG + chr8_4:54830843-54830862 None:intergenic 40.0%
GATTATCCTTTCCTCACCAA+AGG - chr8_4:54830858-54830877 Msa1334410:CDS 40.0%
TCATTTCCTTTGGTGAGGAA+AGG + chr8_4:54830867-54830886 None:intergenic 40.0%
CTCTTGAGTCTCATTTCCTT+TGG + chr8_4:54830877-54830896 None:intergenic 40.0%
TATAGGGAAATGTTTGGCGC+AGG - chr8_4:54829559-54829578 Msa1334410:three_prime_UTR 45.0%
! GGGTTTGGTTGTGGATGAAA+TGG + chr8_4:54829920-54829939 None:intergenic 45.0%
! ATTCTCCACCTCTCTAGAAG+GGG + chr8_4:54829940-54829959 None:intergenic 45.0%
GAATTCTCCACCTCTCTAGA+AGG + chr8_4:54829942-54829961 None:intergenic 45.0%
TGGAGAATTCTCAAGCCAGA+TGG - chr8_4:54829952-54829971 Msa1334410:CDS 45.0%
GCTATTAATGCGATTCGAGC+AGG - chr8_4:54830054-54830073 Msa1334410:CDS 45.0%
ATACTCGTGTTGCATCTGCA+CGG - chr8_4:54830166-54830185 Msa1334410:CDS 45.0%
TGATGGAGTCGAAATTCACG+GGG - chr8_4:54830266-54830285 Msa1334410:CDS 45.0%
! GGTATTGGAGCTGAAAGAGT+TGG - chr8_4:54830411-54830430 Msa1334410:intron 45.0%
ACTGCTAAGCCTAATCCAAG+TGG + chr8_4:54830486-54830505 None:intergenic 45.0%
! AGCTCAAGGTGATGCTGATT+TGG - chr8_4:54830713-54830732 Msa1334410:intron 45.0%
GAGTCTCATTTCCTTTGGTG+AGG + chr8_4:54830872-54830891 None:intergenic 45.0%
TATAGGGAAATGTTTGGCGC+AGG - chr8_4:54829559-54829578 Msa1334410:three_prime_UTR 45.0%
! GGGTTTGGTTGTGGATGAAA+TGG + chr8_4:54829920-54829939 None:intergenic 45.0%
! ATTCTCCACCTCTCTAGAAG+GGG + chr8_4:54829940-54829959 None:intergenic 45.0%
GAATTCTCCACCTCTCTAGA+AGG + chr8_4:54829942-54829961 None:intergenic 45.0%
TGGAGAATTCTCAAGCCAGA+TGG - chr8_4:54829952-54829971 Msa1334410:CDS 45.0%
GCTATTAATGCGATTCGAGC+AGG - chr8_4:54830054-54830073 Msa1334410:CDS 45.0%
ATACTCGTGTTGCATCTGCA+CGG - chr8_4:54830166-54830185 Msa1334410:CDS 45.0%
TGATGGAGTCGAAATTCACG+GGG - chr8_4:54830266-54830285 Msa1334410:CDS 45.0%
! GGTATTGGAGCTGAAAGAGT+TGG - chr8_4:54830411-54830430 Msa1334410:intron 45.0%
ACTGCTAAGCCTAATCCAAG+TGG + chr8_4:54830486-54830505 None:intergenic 45.0%
! AGCTCAAGGTGATGCTGATT+TGG - chr8_4:54830713-54830732 Msa1334410:intron 45.0%
GAGTCTCATTTCCTTTGGTG+AGG + chr8_4:54830872-54830891 None:intergenic 45.0%
!! TAAAAAAAAAAAAAAAAAGA+AGG + chr8_4:54830929-54830948 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAAAAGA+AGG + chr8_4:54830929-54830948 None:intergenic 5.0%
TGTGAAGCAGTGTATCAGCC+TGG - chr8_4:54829883-54829902 Msa1334410:CDS 50.0%
! CTCTAGAAGGGGTTTGGTTG+TGG + chr8_4:54829929-54829948 None:intergenic 50.0%
! CAACCAAACCCCTTCTAGAG+AGG - chr8_4:54829929-54829948 Msa1334410:CDS 50.0%
CTCAAGCCAGATGGTTCCTA+TGG - chr8_4:54829961-54829980 Msa1334410:CDS 50.0%
TATGCGCCATAGGAACCATC+TGG + chr8_4:54829970-54829989 None:intergenic 50.0%
GTGCAGATGCAACACGAGTA+TGG + chr8_4:54830167-54830186 None:intergenic 50.0%
TACTCGTGTTGCATCTGCAC+GGG - chr8_4:54830167-54830186 Msa1334410:CDS 50.0%
TGTTGCATCTGCACGGGTAT+GGG - chr8_4:54830173-54830192 Msa1334410:CDS 50.0%
GATCGAACAGACGAGTATGG+TGG - chr8_4:54830333-54830352 Msa1334410:intron 50.0%
GAGGGAACATTCATGTGCAG+TGG - chr8_4:54830657-54830676 Msa1334410:intron 50.0%
GGAACATTCATGTGCAGTGG+TGG - chr8_4:54830660-54830679 Msa1334410:intron 50.0%
GGAATGGAAGCTGTAGCTCA+AGG - chr8_4:54830699-54830718 Msa1334410:intron 50.0%
TGTGAAGCAGTGTATCAGCC+TGG - chr8_4:54829883-54829902 Msa1334410:CDS 50.0%
! CTCTAGAAGGGGTTTGGTTG+TGG + chr8_4:54829929-54829948 None:intergenic 50.0%
! CAACCAAACCCCTTCTAGAG+AGG - chr8_4:54829929-54829948 Msa1334410:CDS 50.0%
CTCAAGCCAGATGGTTCCTA+TGG - chr8_4:54829961-54829980 Msa1334410:CDS 50.0%
TATGCGCCATAGGAACCATC+TGG + chr8_4:54829970-54829989 None:intergenic 50.0%
GTGCAGATGCAACACGAGTA+TGG + chr8_4:54830167-54830186 None:intergenic 50.0%
TACTCGTGTTGCATCTGCAC+GGG - chr8_4:54830167-54830186 Msa1334410:CDS 50.0%
TGTTGCATCTGCACGGGTAT+GGG - chr8_4:54830173-54830192 Msa1334410:CDS 50.0%
GATCGAACAGACGAGTATGG+TGG - chr8_4:54830333-54830352 Msa1334410:intron 50.0%
GAGGGAACATTCATGTGCAG+TGG - chr8_4:54830657-54830676 Msa1334410:intron 50.0%
GGAACATTCATGTGCAGTGG+TGG - chr8_4:54830660-54830679 Msa1334410:intron 50.0%
GGAATGGAAGCTGTAGCTCA+AGG - chr8_4:54830699-54830718 Msa1334410:intron 50.0%
CAGAGGAACAAGTGGAGGCA+TGG - chr8_4:54829607-54829626 Msa1334410:three_prime_UTR 55.0%
! GGAGGCATGGAGAAATGTCG+TGG - chr8_4:54829620-54829639 Msa1334410:three_prime_UTR 55.0%
GTGGATGCTGCTCATGCCAA+AGG - chr8_4:54829639-54829658 Msa1334410:exon 55.0%
GTTGGTCGTGCATCCCATTC+TGG - chr8_4:54829690-54829709 Msa1334410:CDS 55.0%
GAAGCAGTGTATCAGCCTGG+TGG - chr8_4:54829886-54829905 Msa1334410:CDS 55.0%
! CCACCTCTCTAGAAGGGGTT+TGG + chr8_4:54829935-54829954 None:intergenic 55.0%
! CCAAACCCCTTCTAGAGAGG+TGG - chr8_4:54829932-54829951 Msa1334410:CDS 55.0%
TGGTTCCTATGGCGCATACC+CGG - chr8_4:54829972-54829991 Msa1334410:CDS 55.0%
TCAGAAGTGGTAAGCGCTCG+AGG + chr8_4:54830000-54830019 None:intergenic 55.0%
GTGTTGCATCTGCACGGGTA+TGG - chr8_4:54830172-54830191 Msa1334410:CDS 55.0%
GTCGAAATTCACGGGGCACA+CGG - chr8_4:54830273-54830292 Msa1334410:CDS 55.0%
TCGAAATTCACGGGGCACAC+GGG - chr8_4:54830274-54830293 Msa1334410:CDS 55.0%
!! CGGGCCGTTGTTTCTGGTAT+TGG - chr8_4:54830396-54830415 Msa1334410:intron 55.0%
CAGAGGAACAAGTGGAGGCA+TGG - chr8_4:54829607-54829626 Msa1334410:three_prime_UTR 55.0%
! GGAGGCATGGAGAAATGTCG+TGG - chr8_4:54829620-54829639 Msa1334410:three_prime_UTR 55.0%
GTGGATGCTGCTCATGCCAA+AGG - chr8_4:54829639-54829658 Msa1334410:exon 55.0%
GTTGGTCGTGCATCCCATTC+TGG - chr8_4:54829690-54829709 Msa1334410:CDS 55.0%
GAAGCAGTGTATCAGCCTGG+TGG - chr8_4:54829886-54829905 Msa1334410:CDS 55.0%
! CCACCTCTCTAGAAGGGGTT+TGG + chr8_4:54829935-54829954 None:intergenic 55.0%
! CCAAACCCCTTCTAGAGAGG+TGG - chr8_4:54829932-54829951 Msa1334410:CDS 55.0%
TGGTTCCTATGGCGCATACC+CGG - chr8_4:54829972-54829991 Msa1334410:CDS 55.0%
TCAGAAGTGGTAAGCGCTCG+AGG + chr8_4:54830000-54830019 None:intergenic 55.0%
GTGTTGCATCTGCACGGGTA+TGG - chr8_4:54830172-54830191 Msa1334410:CDS 55.0%
GTCGAAATTCACGGGGCACA+CGG - chr8_4:54830273-54830292 Msa1334410:CDS 55.0%
TCGAAATTCACGGGGCACAC+GGG - chr8_4:54830274-54830293 Msa1334410:CDS 55.0%
!! CGGGCCGTTGTTTCTGGTAT+TGG - chr8_4:54830396-54830415 Msa1334410:intron 55.0%
CGCAGGTTTCCCCATGTACC+TGG - chr8_4:54829576-54829595 Msa1334410:three_prime_UTR 60.0%
GAAATGGGTGCAGCACCACC+AGG + chr8_4:54829904-54829923 None:intergenic 60.0%
! GTGGTTCGGGCCGTTGTTTC+TGG - chr8_4:54830390-54830409 Msa1334410:intron 60.0%
CGCAGGTTTCCCCATGTACC+TGG - chr8_4:54829576-54829595 Msa1334410:three_prime_UTR 60.0%
GAAATGGGTGCAGCACCACC+AGG + chr8_4:54829904-54829923 None:intergenic 60.0%
! GTGGTTCGGGCCGTTGTTTC+TGG - chr8_4:54830390-54830409 Msa1334410:intron 60.0%
AGGCTCCGGGTATGCGCCAT+AGG + chr8_4:54829980-54829999 None:intergenic 65.0%
TGGTAAGCGCTCGAGGCTCC+GGG + chr8_4:54829993-54830012 None:intergenic 65.0%
GTGGTAAGCGCTCGAGGCTC+CGG + chr8_4:54829994-54830013 None:intergenic 65.0%
AGGCTCCGGGTATGCGCCAT+AGG + chr8_4:54829980-54829999 None:intergenic 65.0%
TGGTAAGCGCTCGAGGCTCC+GGG + chr8_4:54829993-54830012 None:intergenic 65.0%
GTGGTAAGCGCTCGAGGCTC+CGG + chr8_4:54829994-54830013 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54829547 54831019 54829547 ID=Msa1334410;Name=Msa1334410
chr8_4 mRNA 54829547 54831019 54829547 ID=Msa1334410-mRNA-1;Parent=Msa1334410;Name=Msa1334410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.33|0.25|0.75|1|1|4|105|324
chr8_4 exon 54829547 54830304 54829547 ID=Msa1334410-mRNA-1:exon:17099;Parent=Msa1334410-mRNA-1
chr8_4 exon 54830491 54830673 54830491 ID=Msa1334410-mRNA-1:exon:17098;Parent=Msa1334410-mRNA-1
chr8_4 exon 54830855 54830985 54830855 ID=Msa1334410-mRNA-1:exon:17097;Parent=Msa1334410-mRNA-1
chr8_4 exon 54831012 54831019 54831012 ID=Msa1334410-mRNA-1:exon:17096;Parent=Msa1334410-mRNA-1
chr8_4 CDS 54831012 54831019 54831012 ID=Msa1334410-mRNA-1:cds;Parent=Msa1334410-mRNA-1
chr8_4 CDS 54830855 54830985 54830855 ID=Msa1334410-mRNA-1:cds;Parent=Msa1334410-mRNA-1
chr8_4 CDS 54830491 54830673 54830491 ID=Msa1334410-mRNA-1:cds;Parent=Msa1334410-mRNA-1
chr8_4 CDS 54829652 54830304 54829652 ID=Msa1334410-mRNA-1:cds;Parent=Msa1334410-mRNA-1
chr8_4 three_prime_UTR 54829547 54829651 54829547 ID=Msa1334410-mRNA-1:three_prime_utr;Parent=Msa1334410-mRNA-1
Gene Sequence

>Msa1334410

ATGGTATTGTTTCCCCATGTACCTGGAATTTATTCAGAGGAACAAGTGGAGGCATGGAGAAATGTCGTGGATGCTGCTCATGCCAAAGGCAGCATTATCTTTTGTCAGTTATGGCATGTTGGTCGTGCATCCCATTCTGTGTATCAGCCTGGTGGTGCTGCACCCATTTCATCCACAACCAAACCCCTTCTAGAGAGGTGGAGAATTCTCAAGCCAGATGGTTCCTATGGCGCATACCCGGAGCCTCGAGCGCTTACCACTTCTGAGATACCAGAAATAGTCAAGGATTATCGCCAATCAGCTATTAATGCGATTCGAGCAGGTTTTGATGGAGTCGAAATTCACGGGGCACACGGGTATCTGATTGATCAATTCTTGAAAGATGGGATCAATGATCGAACAGACGAGTATGGTGGATCACTTGAAAATCGATGCAGGTTCTTAATTCAGGTGGTTCGGGCCGTTGTTTCTGGTATTGGAGCTGAAAGAGTTGGTGTCAGAATTTCCCCAGCAATTGATCACAATGATGCTATTGATTCTGATCCACTTGGATTAGGCTTAGCAGTGATTGAGAGACTAAACAATCTCCAAAAAGAGCTTGGTAGAAAACTCACCTATCTTCATGTTACTCAACCTCGATATACAGCTTATGGAAAAACTGAGTATGACAAGGAAGAAGAAGAGGCTCATTTGATGAGGAACCTAAGAAAAGCTTATGAGGGAACATTCATGTGCAGTGGTGGATATAATAGGAAGTTAGGAATGGAAGCTGTAGCTCAAGGTGATGCTGATTTGGTATCATTTGGTCGTCTTTTCATCTCTAATCCAGATTTGGTTTTAAGGTTTAAGCTAAATGCTCCTCTGAACAAGTATAACAGGAAGACATTTTACACACAGGATCCTGTTATTGGCTACACCGATTATCCTTTCCTCACCAAAGGAAATGAGACTCAAGAGCTAAATGCACGCCTTTGA

Protein sequence

>Msa1334410

MVLFPHVPGIYSEEQVEAWRNVVDAAHAKGSIIFCQLWHVGRASHSVYQPGGAAPISSTTKPLLERWRILKPDGSYGAYPEPRALTTSEIPEIVKDYRQSAINAIRAGFDGVEIHGAHGYLIDQFLKDGINDRTDEYGGSLENRCRFLIQVVRAVVSGIGAERVGVRISPAIDHNDAIDSDPLGLGLAVIERLNNLQKELGRKLTYLHVTQPRYTAYGKTEYDKEEEEAHLMRNLRKAYEGTFMCSGGYNRKLGMEAVAQGDADLVSFGRLFISNPDLVLRFKLNAPLNKYNRKTFYTQDPVIGYTDYPFLTKGNETQELNARL*