Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220010 | XP_013458417.1 | 96.278 | 403 | 13 | 1 | 1 | 403 | 1 | 401 | 0.0 | 807 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220010 | sp|Q9FEW9|OPR3_SOLLC | 74.169 | 391 | 97 | 2 | 16 | 403 | 7 | 396 | 0.0 | 620 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0101240 | Msa1220010 | 0.811442 | 6.986730e-51 | -8.615850e-47 |
Msa1220010 | Msa1266320 | 0.927147 | 1.762201e-91 | -8.615850e-47 |
Msa1220010 | Msa1334410 | 0.932762 | 5.233148e-95 | -8.615850e-47 |
Msa1220010 | Msa1360420 | 0.815499 | 8.961931e-52 | -8.615850e-47 |
Msa0581980 | Msa1220010 | 0.967606 | 1.646258e-127 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220010 | MtrunA17_Chr4g0070561 | 96.278 | 403 | 13 | 1 | 1 | 403 | 1 | 401 | 0.0 | 807 |
Msa1220010 | MtrunA17_Chr5g0394771 | 54.155 | 373 | 152 | 3 | 18 | 390 | 37 | 390 | 4.10e-148 | 425 |
Msa1220010 | MtrunA17_Chr5g0394751 | 54.324 | 370 | 150 | 3 | 21 | 390 | 8 | 358 | 1.13e-146 | 420 |
Msa1220010 | MtrunA17_Chr5g0394891 | 53.704 | 378 | 162 | 3 | 13 | 390 | 4 | 368 | 9.44e-146 | 418 |
Msa1220010 | MtrunA17_Chr5g0394811 | 54.570 | 372 | 152 | 5 | 21 | 390 | 121 | 477 | 6.77e-142 | 412 |
Msa1220010 | MtrunA17_Chr5g0394811 | 43.312 | 157 | 69 | 4 | 27 | 164 | 1 | 156 | 7.29e-34 | 131 |
Msa1220010 | MtrunA17_Chr5g0394861 | 54.155 | 373 | 154 | 5 | 21 | 390 | 12 | 370 | 2.21e-141 | 407 |
Msa1220010 | MtrunA17_Chr5g0394841 | 52.957 | 372 | 160 | 4 | 21 | 390 | 12 | 370 | 5.40e-139 | 401 |
Msa1220010 | MtrunA17_Chr5g0395841 | 53.514 | 370 | 159 | 4 | 21 | 390 | 14 | 370 | 6.43e-139 | 401 |
Msa1220010 | MtrunA17_Chr3g0144001 | 53.175 | 378 | 158 | 5 | 14 | 390 | 3 | 362 | 1.90e-137 | 397 |
Msa1220010 | MtrunA17_Chr5g0394801 | 46.970 | 198 | 67 | 1 | 186 | 383 | 26 | 185 | 6.35e-56 | 184 |
Msa1220010 | MtrunA17_Chr5g0394791 | 50.595 | 168 | 73 | 3 | 21 | 187 | 11 | 169 | 2.87e-47 | 160 |
Msa1220010 | MtrunA17_Chr3g0130471 | 66.667 | 42 | 14 | 0 | 205 | 246 | 1 | 42 | 5.56e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220010 | AT2G06050.2 | 73.766 | 385 | 97 | 2 | 11 | 391 | 2 | 386 | 0.0 | 604 |
Msa1220010 | AT2G06050.1 | 73.766 | 385 | 97 | 2 | 11 | 391 | 2 | 386 | 0.0 | 604 |
Msa1220010 | AT2G06050.3 | 73.766 | 385 | 97 | 2 | 11 | 391 | 2 | 386 | 0.0 | 604 |
Msa1220010 | AT1G76690.1 | 51.989 | 377 | 168 | 3 | 14 | 390 | 7 | 370 | 2.47e-142 | 410 |
Msa1220010 | AT1G76680.1 | 52.255 | 377 | 167 | 3 | 14 | 390 | 5 | 368 | 1.41e-140 | 405 |
Msa1220010 | AT1G76680.2 | 49.005 | 402 | 167 | 4 | 14 | 390 | 5 | 393 | 7.45e-135 | 392 |
Msa1220010 | AT1G09400.1 | 50.437 | 343 | 151 | 3 | 27 | 369 | 1 | 324 | 3.15e-123 | 360 |
Msa1220010 | AT1G09400.2 | 50.704 | 284 | 121 | 3 | 86 | 369 | 1 | 265 | 4.01e-99 | 296 |
Msa1220010 | AT1G17990.1 | 52.030 | 271 | 122 | 3 | 18 | 288 | 6 | 268 | 2.88e-98 | 294 |
Msa1220010 | AT1G18020.1 | 52.030 | 271 | 122 | 3 | 18 | 288 | 6 | 268 | 2.88e-98 | 294 |
Msa1220010 | AT1G17990.2 | 49.446 | 271 | 121 | 4 | 18 | 288 | 6 | 260 | 5.17e-90 | 273 |
Find 116 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATAATCCTTGACTATTTC+TGG | 0.074699 | 8_1:+83003570 | None:intergenic |
GTGGTTCGGGCCGTTGTTTC+TGG | 0.111017 | 8_1:-83003204 | Msa1220010:CDS |
TCCATCTCTCCCACTGCTTA+TGG | 0.186529 | 8_1:-83004773 | Msa1220010:CDS |
TACACACAGGATCCTGTTAT+TGG | 0.238161 | 8_1:-83002766 | Msa1220010:CDS |
CAAAACATTCTCTTAAGATT+TGG | 0.238823 | 8_1:+83002608 | None:intergenic |
CGGGCCGTTGTTTCTGGTAT+TGG | 0.254686 | 8_1:-83003198 | Msa1220010:CDS |
CAACCTCGATATACAGCTTA+TGG | 0.287602 | 8_1:-83003024 | Msa1220010:CDS |
TTAAACCTTAAAACCAAATC+TGG | 0.303799 | 8_1:+83002829 | None:intergenic |
TCGATGCAGGTTCTTAATTC+AGG | 0.309680 | 8_1:-83003226 | Msa1220010:CDS |
GGTTCTTAATTCAGGTGGTT+CGG | 0.310782 | 8_1:-83003218 | Msa1220010:CDS |
TTTCATCTCTAATCCAGATT+TGG | 0.311746 | 8_1:-83002842 | Msa1220010:CDS |
GATTCTGATCCACTTGGATT+AGG | 0.315458 | 8_1:-83003120 | Msa1220010:CDS |
GGGTTTGGTTGTGGATGAAA+TGG | 0.321666 | 8_1:+83003677 | None:intergenic |
CTCTTGAGTCTCATTTCCTT+TGG | 0.330899 | 8_1:+83002720 | None:intergenic |
CCACCTCTCTAGAAGGGGTT+TGG | 0.330917 | 8_1:+83003662 | None:intergenic |
GTTCTTAATTCAGGTGGTTC+GGG | 0.333795 | 8_1:-83003217 | Msa1220010:CDS |
CCATCTCTCCCACTGCTTAT+GGG | 0.338294 | 8_1:-83004772 | Msa1220010:intron |
CTCTAGAAGGGGTTTGGTTG+TGG | 0.342961 | 8_1:+83003668 | None:intergenic |
TGTTCCTCTGAATAAATTCC+AGG | 0.349073 | 8_1:+83004000 | None:intergenic |
CTCCTCTGAACAAGTATAAC+AGG | 0.362982 | 8_1:-83002798 | Msa1220010:CDS |
GTTGGTCGTGCATCCCATTC+TGG | 0.363613 | 8_1:-83003904 | Msa1220010:intron |
TTGAAGTTTGCAATCTTGTA+AGG | 0.367147 | 8_1:+83005011 | None:intergenic |
TGTGCAGTGGTGGATATAAT+AGG | 0.370705 | 8_1:-83002924 | Msa1220010:CDS |
GTGGTAAGCGCTCGAGGCTC+CGG | 0.373825 | 8_1:+83003603 | None:intergenic |
GGTGGATATAATAGGAAGTT+AGG | 0.374612 | 8_1:-83002916 | Msa1220010:CDS |
AGCTCAAGGTGATGCTGATT+TGG | 0.377196 | 8_1:-83002881 | Msa1220010:CDS |
GAATTCTCCACCTCTCTAGA+AGG | 0.384447 | 8_1:+83003655 | None:intergenic |
ATTGATCAATTCTTGAAAGA+TGG | 0.389055 | 8_1:-83003291 | Msa1220010:CDS |
CGCAGGTTTCCCCATGTACC+TGG | 0.393784 | 8_1:-83004018 | Msa1220010:intron |
TTCGTACAACAAAACCAAAA+TGG | 0.405006 | 8_1:+83002643 | None:intergenic |
TAATCGGTGTAGCCAATAAC+AGG | 0.415841 | 8_1:+83002754 | None:intergenic |
GAACCTAAGAAAAGCTTATG+AGG | 0.420831 | 8_1:-83002956 | Msa1220010:CDS |
GATGCTGATTTGGTATCATT+TGG | 0.426648 | 8_1:-83002871 | Msa1220010:CDS |
CTGAATAAATTCCAGGTACA+TGG | 0.427423 | 8_1:+83004007 | None:intergenic |
TGAAATCGAATGATTATTGA+AGG | 0.436371 | 8_1:+83005181 | None:intergenic |
AATGATCGAACAGACGAGTA+TGG | 0.441181 | 8_1:-83003264 | Msa1220010:CDS |
TATTCAGCAAGTGCTGCGTT+TGG | 0.442605 | 8_1:+83004845 | None:intergenic |
AACGCTCTGCATCTCGTCAT+AGG | 0.445839 | 8_1:+83004878 | None:intergenic |
TTTGGTGAGGAAAGGATAAT+CGG | 0.449437 | 8_1:+83002738 | None:intergenic |
ATTGGAGTGCAGGGTGGTGT+TGG | 0.449570 | 8_1:-83004903 | Msa1220010:intron |
GCTATTAATGCGATTCGAGC+AGG | 0.471945 | 8_1:-83003540 | Msa1220010:intron |
TTGATCAATTCTTGAAAGAT+GGG | 0.478672 | 8_1:-83003290 | Msa1220010:CDS |
CTCAAGCCAGATGGTTCCTA+TGG | 0.479424 | 8_1:-83003633 | Msa1220010:CDS |
ACAAAAGATAATGCTGCCTT+TGG | 0.485408 | 8_1:+83003939 | None:intergenic |
AGGTTGAGTAACATGAAGAT+AGG | 0.492670 | 8_1:+83003041 | None:intergenic |
GAAACTGAGGTTACCAGAAT+GGG | 0.497238 | 8_1:+83003891 | None:intergenic |
AGGCTCCGGGTATGCGCCAT+AGG | 0.499161 | 8_1:+83003617 | None:intergenic |
GGTTTGGTTGTGGATGAAAT+GGG | 0.499316 | 8_1:+83003678 | None:intergenic |
TTGATGGAGTCGAAATTCAC+GGG | 0.503324 | 8_1:-83003329 | Msa1220010:CDS |
GCATCATTGTGATCAATTGC+TGG | 0.504056 | 8_1:+83003147 | None:intergenic |
TGAAACTGAGGTTACCAGAA+TGG | 0.512235 | 8_1:+83003890 | None:intergenic |
TTTGATGGAGTCGAAATTCA+CGG | 0.512397 | 8_1:-83003330 | Msa1220010:CDS |
AGGAGAAAAGAGGGTGGTGC+TGG | 0.515328 | 8_1:+83005031 | None:intergenic |
TGGTAAGCGCTCGAGGCTCC+GGG | 0.517375 | 8_1:+83003604 | None:intergenic |
CCCATAAGCAGTGGGAGAGA+TGG | 0.517721 | 8_1:+83004772 | None:intergenic |
TCATTTCCTTTGGTGAGGAA+AGG | 0.518047 | 8_1:+83002730 | None:intergenic |
TCTGGAAGTTGATCCCAATC+AGG | 0.520097 | 8_1:-83005141 | Msa1220010:five_prime_UTR |
CAATCTTGTAAGGAGAAAAG+AGG | 0.521873 | 8_1:+83005021 | None:intergenic |
GAATCGCATTAATAGCTGAT+TGG | 0.525902 | 8_1:+83003547 | None:intergenic |
GCTATTGATTCTGATCCACT+TGG | 0.530394 | 8_1:-83003126 | Msa1220010:CDS |
TATGCGCCATAGGAACCATC+TGG | 0.531081 | 8_1:+83003627 | None:intergenic |
GTCGAAATTCACGGGGCACA+CGG | 0.533112 | 8_1:-83003321 | Msa1220010:CDS |
GAGTCTCATTTCCTTTGGTG+AGG | 0.533954 | 8_1:+83002725 | None:intergenic |
ACGAGATGCAGAGCGTTGAA+TGG | 0.535942 | 8_1:-83004872 | Msa1220010:CDS |
GAAATCGAATGATTATTGAA+GGG | 0.540825 | 8_1:+83005182 | None:intergenic |
TTCCTGTTATACTTGTTCAG+AGG | 0.544474 | 8_1:+83002796 | None:intergenic |
AATTCTCCACCTCTCTAGAA+GGG | 0.550426 | 8_1:+83003656 | None:intergenic |
TCGAAATTCACGGGGCACAC+GGG | 0.550944 | 8_1:-83003320 | Msa1220010:CDS |
TGAATAAATTCCAGGTACAT+GGG | 0.553359 | 8_1:+83004008 | None:intergenic |
TGGTTCCTATGGCGCATACC+CGG | 0.554696 | 8_1:-83003622 | Msa1220010:CDS |
GTATGACAAGGAAGAAGAAG+AGG | 0.555686 | 8_1:-83002992 | Msa1220010:CDS |
GAAATGGGTGCAGCACCACC+AGG | 0.555752 | 8_1:+83003693 | None:intergenic |
CAGAGGAACAAGTGGAGGCA+TGG | 0.561445 | 8_1:-83003987 | Msa1220010:CDS |
GGTGGATTTCTCATCGGTGA+AGG | 0.575119 | 8_1:-83004800 | Msa1220010:CDS |
AAATGTAATCTTATATATCG+TGG | 0.578530 | 8_1:-83002580 | Msa1220010:three_prime_UTR |
GATCACTTGAAAATCGATGC+AGG | 0.580483 | 8_1:-83003239 | Msa1220010:CDS |
ATTATATACCCATAAGCAGT+GGG | 0.587040 | 8_1:+83004764 | None:intergenic |
ATGCAGGTTCTTAATTCAGG+TGG | 0.588415 | 8_1:-83003223 | Msa1220010:CDS |
TCAGAAGTGGTAAGCGCTCG+AGG | 0.590830 | 8_1:+83003597 | None:intergenic |
ATATAATAGGAAGTTAGGAA+TGG | 0.592051 | 8_1:-83002911 | Msa1220010:CDS |
GGAATGGAAGCTGTAGCTCA+AGG | 0.592444 | 8_1:-83002895 | Msa1220010:CDS |
CCAAACCCCTTCTAGAGAGG+TGG | 0.592960 | 8_1:-83003662 | Msa1220010:CDS |
AGTTCAACAACACAAGTACA+AGG | 0.594788 | 8_1:-83005059 | Msa1220010:CDS |
TATTTCTGGTATCTCAGAAG+TGG | 0.602504 | 8_1:+83003584 | None:intergenic |
TACGCTCAAAGATCAACTCC+AGG | 0.602812 | 8_1:-83004821 | Msa1220010:CDS |
GATTATCCTTTCCTCACCAA+AGG | 0.604147 | 8_1:-83002736 | Msa1220010:CDS |
GGAACATTCATGTGCAGTGG+TGG | 0.609749 | 8_1:-83002934 | Msa1220010:CDS |
TTATTCAGAGGAACAAGTGG+AGG | 0.610128 | 8_1:-83003992 | Msa1220010:CDS |
AATTTATTCAGAGGAACAAG+TGG | 0.610952 | 8_1:-83003995 | Msa1220010:CDS |
TTTCCATAAGCTGTATATCG+AGG | 0.611276 | 8_1:+83003021 | None:intergenic |
ATAAGCAGTGGGAGAGATGG+AGG | 0.611650 | 8_1:+83004775 | None:intergenic |
AAGAAGAGGCTCATTTGATG+AGG | 0.613862 | 8_1:-83002978 | Msa1220010:CDS |
CAACCAAACCCCTTCTAGAG+AGG | 0.615926 | 8_1:-83003665 | Msa1220010:CDS |
ATTCTCCACCTCTCTAGAAG+GGG | 0.617495 | 8_1:+83003657 | None:intergenic |
AACCTAAGAAAAGCTTATGA+GGG | 0.618035 | 8_1:-83002955 | Msa1220010:CDS |
TGGAGAATTCTCAAGCCAGA+TGG | 0.619198 | 8_1:-83003642 | Msa1220010:CDS |
CAAAATATATATATTAACAA+TGG | 0.622360 | 8_1:-83005099 | Msa1220010:exon |
GGTATTGGAGCTGAAAGAGT+TGG | 0.624730 | 8_1:-83003183 | Msa1220010:CDS |
GAATAAATTCCAGGTACATG+GGG | 0.626230 | 8_1:+83004009 | None:intergenic |
ACTCCAGGTGGATTTCTCAT+CGG | 0.631444 | 8_1:-83004806 | Msa1220010:CDS |
AATTATATACCCATAAGCAG+TGG | 0.632930 | 8_1:+83004763 | None:intergenic |
ACTGCTAAGCCTAATCCAAG+TGG | 0.645958 | 8_1:+83003111 | None:intergenic |
AGCTCCAATACCAGAAACAA+CGG | 0.648152 | 8_1:+83003194 | None:intergenic |
TGTGAAGCAGTGTATCAGCC+TGG | 0.649524 | 8_1:-83003711 | Msa1220010:intron |
GTGGATGCTGCTCATGCCAA+AGG | 0.652152 | 8_1:-83003955 | Msa1220010:CDS |
GATCGAACAGACGAGTATGG+TGG | 0.652328 | 8_1:-83003261 | Msa1220010:CDS |
TGAGATACCAGAAATAGTCA+AGG | 0.658712 | 8_1:-83003577 | Msa1220010:CDS |
TGTACCTGGAATTTATTCAG+AGG | 0.660053 | 8_1:-83004004 | Msa1220010:CDS |
TCACCGATGAGAAATCCACC+TGG | 0.665351 | 8_1:+83004803 | None:intergenic |
AATCTTGTAAGGAGAAAAGA+GGG | 0.669109 | 8_1:+83005022 | None:intergenic |
GGAGGCATGGAGAAATGTCG+TGG | 0.680628 | 8_1:-83003974 | Msa1220010:CDS |
GCTCAAAGATCAACTCCAGG+TGG | 0.683876 | 8_1:-83004818 | Msa1220010:CDS |
GAGGGAACATTCATGTGCAG+TGG | 0.698747 | 8_1:-83002937 | Msa1220010:CDS |
TGATGGAGTCGAAATTCACG+GGG | 0.717446 | 8_1:-83003328 | Msa1220010:CDS |
GAAGCAGTGTATCAGCCTGG+TGG | 0.735693 | 8_1:-83003708 | Msa1220010:intron |
CTTGTAAGGAGAAAAGAGGG+TGG | 0.760384 | 8_1:+83005025 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATATATATATTTTGTGA+TGG | + | chr8_1:83002564-83002583 | None:intergenic | 10.0% |
!! | CAAAATATATATATTAACAA+TGG | - | chr8_1:83002567-83002586 | Msa1220010:three_prime_UTR | 10.0% |
!!! | AAATTTGGATTATTTTTTTA+AGG | + | chr8_1:83003074-83003093 | None:intergenic | 10.0% |
!!! | TGTAATATTTTCATATATTT+AGG | + | chr8_1:83003597-83003616 | None:intergenic | 10.0% |
!! | TATATGAAAATATTACATTA+TGG | - | chr8_1:83003600-83003619 | Msa1220010:CDS | 10.0% |
!!! | TTTTTTTTTTTTTACCATTT+TGG | - | chr8_1:83005009-83005028 | Msa1220010:CDS | 10.0% |
!! | AAACAGTTATAAAGTAATAA+AGG | - | chr8_1:83003131-83003150 | Msa1220010:CDS | 15.0% |
!!! | ATAAAGTAATAAAGGTATAT+TGG | - | chr8_1:83003139-83003158 | Msa1220010:CDS | 15.0% |
!! | TATATAAAAGAAATATAGGA+CGG | - | chr8_1:83003207-83003226 | Msa1220010:CDS | 15.0% |
!! | AGTACATAAAACTAAATAAA+CGG | - | chr8_1:83003369-83003388 | Msa1220010:intron | 15.0% |
!!! | TATTTTCATATATTTAGGAT+TGG | + | chr8_1:83003592-83003611 | None:intergenic | 15.0% |
!!! | AATACTACATTTTTAGATTC+TGG | - | chr8_1:83002507-83002526 | Msa1220010:three_prime_UTR | 20.0% |
!!! | TTTTTTTTCTCTGTTATTGT+GGG | - | chr8_1:83002714-83002733 | Msa1220010:CDS | 20.0% |
!! | AAATAATATTATGTTGATGC+TGG | - | chr8_1:83003027-83003046 | Msa1220010:CDS | 20.0% |
!! | ATACATCTAACAATCAAATT+TGG | + | chr8_1:83003089-83003108 | None:intergenic | 20.0% |
!!! | TTTATCCTTTGAAATTTGTA+AGG | + | chr8_1:83003184-83003203 | None:intergenic | 20.0% |
!! | ACATTATGGTATTGTAATAT+AGG | - | chr8_1:83003614-83003633 | Msa1220010:CDS | 20.0% |
!! | CATTATGGTATTGTAATATA+GGG | - | chr8_1:83003615-83003634 | Msa1220010:CDS | 20.0% |
!! | AAATGTAATCTTATATATCG+TGG | - | chr8_1:83005086-83005105 | Msa1220010:exon | 20.0% |
! | GAAATCGAATGATTATTGAA+GGG | + | chr8_1:83002487-83002506 | None:intergenic | 25.0% |
! | TGAAATCGAATGATTATTGA+AGG | + | chr8_1:83002488-83002507 | None:intergenic | 25.0% |
!!! | GTTTTTTTTCTCTGTTATTG+TGG | - | chr8_1:83002713-83002732 | Msa1220010:CDS | 25.0% |
! | AAAGAAAAAGCTTGAAAAAG+AGG | + | chr8_1:83002929-83002948 | None:intergenic | 25.0% |
! | GACATCAATGAATATAAGTT+AGG | + | chr8_1:83002980-83002999 | None:intergenic | 25.0% |
! | TTTGATTGTTAGATGTATGT+TGG | - | chr8_1:83003091-83003110 | Msa1220010:CDS | 25.0% |
! | TGTATGTTGGTATTTACTAT+TGG | - | chr8_1:83003104-83003123 | Msa1220010:CDS | 25.0% |
! | ATTGTCCTTACAAATTTCAA+AGG | - | chr8_1:83003176-83003195 | Msa1220010:CDS | 25.0% |
! | TTGTAATATAGGGAAATGTT+TGG | - | chr8_1:83003625-83003644 | Msa1220010:CDS | 25.0% |
! | TTCACAATTAAATCATTGAG+TGG | + | chr8_1:83003941-83003960 | None:intergenic | 25.0% |
! | TATTTGTTTACATCTCTTCA+AGG | - | chr8_1:83004154-83004173 | Msa1220010:intron | 25.0% |
! | CTCACAAACATAAAATAGTA+AGG | + | chr8_1:83004194-83004213 | None:intergenic | 25.0% |
! | ATTGATCAATTCTTGAAAGA+TGG | - | chr8_1:83004375-83004394 | Msa1220010:intron | 25.0% |
! | TTGATCAATTCTTGAAAGAT+GGG | - | chr8_1:83004376-83004395 | Msa1220010:intron | 25.0% |
! | ATATAATAGGAAGTTAGGAA+TGG | - | chr8_1:83004755-83004774 | Msa1220010:intron | 25.0% |
! | TTAAACCTTAAAACCAAATC+TGG | + | chr8_1:83004840-83004859 | None:intergenic | 25.0% |
! | CAAAACATTCTCTTAAGATT+TGG | + | chr8_1:83005061-83005080 | None:intergenic | 25.0% |
! | ATGAATTTTCTCTCCTGATT+GGG | + | chr8_1:83002541-83002560 | None:intergenic | 30.0% |
AATCTTGTAAGGAGAAAAGA+GGG | + | chr8_1:83002647-83002666 | None:intergenic | 30.0% | |
TTGAAGTTTGCAATCTTGTA+AGG | + | chr8_1:83002658-83002677 | None:intergenic | 30.0% | |
! | CAAACTTCAACTTTTCTCAT+AGG | - | chr8_1:83002668-83002687 | Msa1220010:three_prime_UTR | 30.0% |
ATTATATACCCATAAGCAGT+GGG | + | chr8_1:83002905-83002924 | None:intergenic | 30.0% | |
AATTATATACCCATAAGCAG+TGG | + | chr8_1:83002906-83002925 | None:intergenic | 30.0% | |
GAATAGTACTAAAACCATGT+AGG | + | chr8_1:83003408-83003427 | None:intergenic | 30.0% | |
TGAATAAATTCCAGGTACAT+GGG | + | chr8_1:83003661-83003680 | None:intergenic | 30.0% | |
AATTTATTCAGAGGAACAAG+TGG | - | chr8_1:83003671-83003690 | Msa1220010:CDS | 30.0% | |
! | GCATTATCTTTTGTCAGTTA+TGG | - | chr8_1:83003736-83003755 | Msa1220010:intron | 30.0% |
! | GTTTTCAATGCAGTTCATTA+AGG | + | chr8_1:83003828-83003847 | None:intergenic | 30.0% |
AACCTAAGAAAAGCTTATGA+GGG | - | chr8_1:83004711-83004730 | Msa1220010:intron | 30.0% | |
TTTCATCTCTAATCCAGATT+TGG | - | chr8_1:83004824-83004843 | Msa1220010:CDS | 30.0% | |
!!! | CTAATCCAGATTTGGTTTTA+AGG | - | chr8_1:83004832-83004851 | Msa1220010:CDS | 30.0% |
GAAGGAAAAACAACAATCAA+AGG | + | chr8_1:83004983-83005002 | None:intergenic | 30.0% | |
TTCGTACAACAAAACCAAAA+TGG | + | chr8_1:83005026-83005045 | None:intergenic | 30.0% | |
! | GATGAATTTTCTCTCCTGAT+TGG | + | chr8_1:83002542-83002561 | None:intergenic | 35.0% |
AGTTCAACAACACAAGTACA+AGG | - | chr8_1:83002607-83002626 | Msa1220010:three_prime_UTR | 35.0% | |
CAATCTTGTAAGGAGAAAAG+AGG | + | chr8_1:83002648-83002667 | None:intergenic | 35.0% | |
ACTATGATCTGATGTGGTTA+TGG | - | chr8_1:83002739-83002758 | Msa1220010:CDS | 35.0% | |
ATCTGATGTGGTTATGGTAT+TGG | - | chr8_1:83002745-83002764 | Msa1220010:CDS | 35.0% | |
! | CATGCATCTGATTTTGTCAA+TGG | - | chr8_1:83003272-83003291 | Msa1220010:CDS | 35.0% |
AGTTGCGACAAATGAATCAA+GGG | + | chr8_1:83003305-83003324 | None:intergenic | 35.0% | |
AAGTTGCGACAAATGAATCA+AGG | + | chr8_1:83003306-83003325 | None:intergenic | 35.0% | |
GTCAAACAAAAAGTCCTACA+TGG | - | chr8_1:83003391-83003410 | Msa1220010:intron | 35.0% | |
TTAAACACAATCAGCCTCAT+TGG | + | chr8_1:83003443-83003462 | None:intergenic | 35.0% | |
ATCAACGACAAAAAGAACAC+AGG | + | chr8_1:83003486-83003505 | None:intergenic | 35.0% | |
GAATAAATTCCAGGTACATG+GGG | + | chr8_1:83003660-83003679 | None:intergenic | 35.0% | |
CTGAATAAATTCCAGGTACA+TGG | + | chr8_1:83003662-83003681 | None:intergenic | 35.0% | |
TGTACCTGGAATTTATTCAG+AGG | - | chr8_1:83003662-83003681 | Msa1220010:CDS | 35.0% | |
TGTTCCTCTGAATAAATTCC+AGG | + | chr8_1:83003669-83003688 | None:intergenic | 35.0% | |
ACAAAAGATAATGCTGCCTT+TGG | + | chr8_1:83003730-83003749 | None:intergenic | 35.0% | |
! | TTTTGTCAGTTATGGCATGT+TGG | - | chr8_1:83003744-83003763 | Msa1220010:intron | 35.0% |
! | CATTTAGGATAGTGAAACTG+AGG | + | chr8_1:83003791-83003810 | None:intergenic | 35.0% |
! | GATGAACTTGTGAAGCATTT+AGG | + | chr8_1:83003806-83003825 | None:intergenic | 35.0% |
!! | TATTTCTGGTATCTCAGAAG+TGG | + | chr8_1:83004085-83004104 | None:intergenic | 35.0% |
TGAGATACCAGAAATAGTCA+AGG | - | chr8_1:83004089-83004108 | Msa1220010:intron | 35.0% | |
CGATAATCCTTGACTATTTC+TGG | + | chr8_1:83004099-83004118 | None:intergenic | 35.0% | |
GAATCGCATTAATAGCTGAT+TGG | + | chr8_1:83004122-83004141 | None:intergenic | 35.0% | |
ATGAAATGAGACGTACATAC+AGG | - | chr8_1:83004312-83004331 | Msa1220010:intron | 35.0% | |
TTTGATGGAGTCGAAATTCA+CGG | - | chr8_1:83004336-83004355 | Msa1220010:intron | 35.0% | |
AACAATCTCCAAAAAGAGCT+TGG | - | chr8_1:83004591-83004610 | Msa1220010:intron | 35.0% | |
! | GTTTTCTACCAAGCTCTTTT+TGG | + | chr8_1:83004602-83004621 | None:intergenic | 35.0% |
AGGTTGAGTAACATGAAGAT+AGG | + | chr8_1:83004628-83004647 | None:intergenic | 35.0% | |
TTTCCATAAGCTGTATATCG+AGG | + | chr8_1:83004648-83004667 | None:intergenic | 35.0% | |
TGGAAAAACTGAGTATGACA+AGG | - | chr8_1:83004662-83004681 | Msa1220010:intron | 35.0% | |
GAACCTAAGAAAAGCTTATG+AGG | - | chr8_1:83004710-83004729 | Msa1220010:intron | 35.0% | |
! | TTCCCTCATAAGCTTTTCTT+AGG | + | chr8_1:83004716-83004735 | None:intergenic | 35.0% |
GGTGGATATAATAGGAAGTT+AGG | - | chr8_1:83004750-83004769 | Msa1220010:intron | 35.0% | |
!! | GATGCTGATTTGGTATCATT+TGG | - | chr8_1:83004795-83004814 | Msa1220010:CDS | 35.0% |
TTCCTGTTATACTTGTTCAG+AGG | + | chr8_1:83004873-83004892 | None:intergenic | 35.0% | |
TTTGGTGAGGAAAGGATAAT+CGG | + | chr8_1:83004931-83004950 | None:intergenic | 35.0% | |
!!! | GGTTTTGTTGTACGAACAAT+TGG | - | chr8_1:83005030-83005049 | Msa1220010:CDS | 35.0% |
! | CATCTGATTTTGTCAATGGC+CGG | - | chr8_1:83003276-83003295 | Msa1220010:CDS | 40.0% |
TTATTCAGAGGAACAAGTGG+AGG | - | chr8_1:83003674-83003693 | Msa1220010:CDS | 40.0% | |
GAAACTGAGGTTACCAGAAT+GGG | + | chr8_1:83003778-83003797 | None:intergenic | 40.0% | |
TGAAACTGAGGTTACCAGAA+TGG | + | chr8_1:83003779-83003798 | None:intergenic | 40.0% | |
! | GGTTTGGTTGTGGATGAAAT+GGG | + | chr8_1:83003991-83004010 | None:intergenic | 40.0% |
! | AATTCTCCACCTCTCTAGAA+GGG | + | chr8_1:83004013-83004032 | None:intergenic | 40.0% |
!! | GACGTACATACAGGTTTTGA+TGG | - | chr8_1:83004321-83004340 | Msa1220010:intron | 40.0% |
TTGATGGAGTCGAAATTCAC+GGG | - | chr8_1:83004337-83004356 | Msa1220010:intron | 40.0% | |
AATGATCGAACAGACGAGTA+TGG | - | chr8_1:83004402-83004421 | Msa1220010:intron | 40.0% | |
GATCACTTGAAAATCGATGC+AGG | - | chr8_1:83004427-83004446 | Msa1220010:intron | 40.0% | |
TCGATGCAGGTTCTTAATTC+AGG | - | chr8_1:83004440-83004459 | Msa1220010:intron | 40.0% | |
ATGCAGGTTCTTAATTCAGG+TGG | - | chr8_1:83004443-83004462 | Msa1220010:intron | 40.0% | |
GGTTCTTAATTCAGGTGGTT+CGG | - | chr8_1:83004448-83004467 | Msa1220010:intron | 40.0% | |
GTTCTTAATTCAGGTGGTTC+GGG | - | chr8_1:83004449-83004468 | Msa1220010:intron | 40.0% | |
AGCTCCAATACCAGAAACAA+CGG | + | chr8_1:83004475-83004494 | None:intergenic | 40.0% | |
GCATCATTGTGATCAATTGC+TGG | + | chr8_1:83004522-83004541 | None:intergenic | 40.0% | |
!! | GCTATTGATTCTGATCCACT+TGG | - | chr8_1:83004540-83004559 | Msa1220010:intron | 40.0% |
GATTCTGATCCACTTGGATT+AGG | - | chr8_1:83004546-83004565 | Msa1220010:intron | 40.0% | |
CAACCTCGATATACAGCTTA+TGG | - | chr8_1:83004642-83004661 | Msa1220010:intron | 40.0% | |
GTATGACAAGGAAGAAGAAG+AGG | - | chr8_1:83004674-83004693 | Msa1220010:intron | 40.0% | |
AAGAAGAGGCTCATTTGATG+AGG | - | chr8_1:83004688-83004707 | Msa1220010:intron | 40.0% | |
!! | TGTGCAGTGGTGGATATAAT+AGG | - | chr8_1:83004742-83004761 | Msa1220010:intron | 40.0% |
CTCCTCTGAACAAGTATAAC+AGG | - | chr8_1:83004868-83004887 | Msa1220010:CDS | 40.0% | |
! | CAGGAAGACATTTTACACAC+AGG | - | chr8_1:83004887-83004906 | Msa1220010:CDS | 40.0% |
TACACACAGGATCCTGTTAT+TGG | - | chr8_1:83004900-83004919 | Msa1220010:intron | 40.0% | |
TAATCGGTGTAGCCAATAAC+AGG | + | chr8_1:83004915-83004934 | None:intergenic | 40.0% | |
GATTATCCTTTCCTCACCAA+AGG | - | chr8_1:83004930-83004949 | Msa1220010:intron | 40.0% | |
TCATTTCCTTTGGTGAGGAA+AGG | + | chr8_1:83004939-83004958 | None:intergenic | 40.0% | |
CTCTTGAGTCTCATTTCCTT+TGG | + | chr8_1:83004949-83004968 | None:intergenic | 40.0% | |
! | TCTGGAAGTTGATCCCAATC+AGG | - | chr8_1:83002525-83002544 | Msa1220010:three_prime_UTR | 45.0% |
CTTGTAAGGAGAAAAGAGGG+TGG | + | chr8_1:83002644-83002663 | None:intergenic | 45.0% | |
TGGGTGACTATGATCTGATG+TGG | - | chr8_1:83002733-83002752 | Msa1220010:CDS | 45.0% | |
! | TGGTTATGGTATTGGAGTGC+AGG | - | chr8_1:83002753-83002772 | Msa1220010:CDS | 45.0% |
! | GGTTATGGTATTGGAGTGCA+GGG | - | chr8_1:83002754-83002773 | Msa1220010:CDS | 45.0% |
! | TATTCAGCAAGTGCTGCGTT+TGG | + | chr8_1:83002824-83002843 | None:intergenic | 45.0% |
TACGCTCAAAGATCAACTCC+AGG | - | chr8_1:83002845-83002864 | Msa1220010:CDS | 45.0% | |
! | ACTCCAGGTGGATTTCTCAT+CGG | - | chr8_1:83002860-83002879 | Msa1220010:CDS | 45.0% |
ACAAATGAATCAAGGGTGGC+CGG | + | chr8_1:83003298-83003317 | None:intergenic | 45.0% | |
TGCGACAAATGAATCAAGGG+TGG | + | chr8_1:83003302-83003321 | None:intergenic | 45.0% | |
TCTATCGCTACCAACCAATG+AGG | - | chr8_1:83003426-83003445 | Msa1220010:intron | 45.0% | |
ACACAATCAGCCTCATTGGT+TGG | + | chr8_1:83003439-83003458 | None:intergenic | 45.0% | |
TATAGGGAAATGTTTGGCGC+AGG | - | chr8_1:83003631-83003650 | Msa1220010:CDS | 45.0% | |
! | GGGTTTGGTTGTGGATGAAA+TGG | + | chr8_1:83003992-83004011 | None:intergenic | 45.0% |
! | ATTCTCCACCTCTCTAGAAG+GGG | + | chr8_1:83004012-83004031 | None:intergenic | 45.0% |
GAATTCTCCACCTCTCTAGA+AGG | + | chr8_1:83004014-83004033 | None:intergenic | 45.0% | |
TGGAGAATTCTCAAGCCAGA+TGG | - | chr8_1:83004024-83004043 | Msa1220010:intron | 45.0% | |
GCTATTAATGCGATTCGAGC+AGG | - | chr8_1:83004126-83004145 | Msa1220010:intron | 45.0% | |
ATACTCGTGTTGCATCTGCA+CGG | - | chr8_1:83004238-83004257 | Msa1220010:intron | 45.0% | |
TGATGGAGTCGAAATTCACG+GGG | - | chr8_1:83004338-83004357 | Msa1220010:intron | 45.0% | |
! | GGTATTGGAGCTGAAAGAGT+TGG | - | chr8_1:83004483-83004502 | Msa1220010:intron | 45.0% |
ACTGCTAAGCCTAATCCAAG+TGG | + | chr8_1:83004558-83004577 | None:intergenic | 45.0% | |
! | AGCTCAAGGTGATGCTGATT+TGG | - | chr8_1:83004785-83004804 | Msa1220010:CDS | 45.0% |
GAGTCTCATTTCCTTTGGTG+AGG | + | chr8_1:83004944-83004963 | None:intergenic | 45.0% | |
!! | AAAATATATAAAAGAAATAT+AGG | - | chr8_1:83003203-83003222 | Msa1220010:CDS | 5.0% |
!! | AAAAAAAAAAAAAAAAAAGA+AGG | + | chr8_1:83005001-83005020 | None:intergenic | 5.0% |
! | TATGGTATTGGAGTGCAGGG+TGG | - | chr8_1:83002757-83002776 | Msa1220010:CDS | 50.0% |
AACGCTCTGCATCTCGTCAT+AGG | + | chr8_1:83002791-83002810 | None:intergenic | 50.0% | |
!! | ACGAGATGCAGAGCGTTGAA+TGG | - | chr8_1:83002794-83002813 | Msa1220010:CDS | 50.0% |
GCTCAAAGATCAACTCCAGG+TGG | - | chr8_1:83002848-83002867 | Msa1220010:CDS | 50.0% | |
TCACCGATGAGAAATCCACC+TGG | + | chr8_1:83002866-83002885 | None:intergenic | 50.0% | |
! | GGTGGATTTCTCATCGGTGA+AGG | - | chr8_1:83002866-83002885 | Msa1220010:CDS | 50.0% |
ATAAGCAGTGGGAGAGATGG+AGG | + | chr8_1:83002894-83002913 | None:intergenic | 50.0% | |
TCCATCTCTCCCACTGCTTA+TGG | - | chr8_1:83002893-83002912 | Msa1220010:CDS | 50.0% | |
CCATCTCTCCCACTGCTTAT+GGG | - | chr8_1:83002894-83002913 | Msa1220010:CDS | 50.0% | |
TGTGAAGCAGTGTATCAGCC+TGG | - | chr8_1:83003955-83003974 | Msa1220010:CDS | 50.0% | |
! | CTCTAGAAGGGGTTTGGTTG+TGG | + | chr8_1:83004001-83004020 | None:intergenic | 50.0% |
! | CAACCAAACCCCTTCTAGAG+AGG | - | chr8_1:83004001-83004020 | Msa1220010:CDS | 50.0% |
CTCAAGCCAGATGGTTCCTA+TGG | - | chr8_1:83004033-83004052 | Msa1220010:intron | 50.0% | |
TATGCGCCATAGGAACCATC+TGG | + | chr8_1:83004042-83004061 | None:intergenic | 50.0% | |
GTGCAGATGCAACACGAGTA+TGG | + | chr8_1:83004239-83004258 | None:intergenic | 50.0% | |
TACTCGTGTTGCATCTGCAC+GGG | - | chr8_1:83004239-83004258 | Msa1220010:intron | 50.0% | |
TGTTGCATCTGCACGGGTAT+GGG | - | chr8_1:83004245-83004264 | Msa1220010:intron | 50.0% | |
GATCGAACAGACGAGTATGG+TGG | - | chr8_1:83004405-83004424 | Msa1220010:intron | 50.0% | |
GAGGGAACATTCATGTGCAG+TGG | - | chr8_1:83004729-83004748 | Msa1220010:intron | 50.0% | |
GGAACATTCATGTGCAGTGG+TGG | - | chr8_1:83004732-83004751 | Msa1220010:intron | 50.0% | |
GGAATGGAAGCTGTAGCTCA+AGG | - | chr8_1:83004771-83004790 | Msa1220010:intron | 50.0% | |
AGGAGAAAAGAGGGTGGTGC+TGG | + | chr8_1:83002638-83002657 | None:intergenic | 55.0% | |
ATTGGAGTGCAGGGTGGTGT+TGG | - | chr8_1:83002763-83002782 | Msa1220010:CDS | 55.0% | |
CCCATAAGCAGTGGGAGAGA+TGG | + | chr8_1:83002897-83002916 | None:intergenic | 55.0% | |
CAGAGGAACAAGTGGAGGCA+TGG | - | chr8_1:83003679-83003698 | Msa1220010:CDS | 55.0% | |
! | GGAGGCATGGAGAAATGTCG+TGG | - | chr8_1:83003692-83003711 | Msa1220010:CDS | 55.0% |
GTGGATGCTGCTCATGCCAA+AGG | - | chr8_1:83003711-83003730 | Msa1220010:intron | 55.0% | |
GTTGGTCGTGCATCCCATTC+TGG | - | chr8_1:83003762-83003781 | Msa1220010:intron | 55.0% | |
GAAGCAGTGTATCAGCCTGG+TGG | - | chr8_1:83003958-83003977 | Msa1220010:CDS | 55.0% | |
! | CCACCTCTCTAGAAGGGGTT+TGG | + | chr8_1:83004007-83004026 | None:intergenic | 55.0% |
! | CCAAACCCCTTCTAGAGAGG+TGG | - | chr8_1:83004004-83004023 | Msa1220010:CDS | 55.0% |
TGGTTCCTATGGCGCATACC+CGG | - | chr8_1:83004044-83004063 | Msa1220010:intron | 55.0% | |
TCAGAAGTGGTAAGCGCTCG+AGG | + | chr8_1:83004072-83004091 | None:intergenic | 55.0% | |
GTGTTGCATCTGCACGGGTA+TGG | - | chr8_1:83004244-83004263 | Msa1220010:intron | 55.0% | |
GTCGAAATTCACGGGGCACA+CGG | - | chr8_1:83004345-83004364 | Msa1220010:intron | 55.0% | |
TCGAAATTCACGGGGCACAC+GGG | - | chr8_1:83004346-83004365 | Msa1220010:intron | 55.0% | |
!! | CGGGCCGTTGTTTCTGGTAT+TGG | - | chr8_1:83004468-83004487 | Msa1220010:intron | 55.0% |
CGCAGGTTTCCCCATGTACC+TGG | - | chr8_1:83003648-83003667 | Msa1220010:CDS | 60.0% | |
GAAATGGGTGCAGCACCACC+AGG | + | chr8_1:83003976-83003995 | None:intergenic | 60.0% | |
! | GTGGTTCGGGCCGTTGTTTC+TGG | - | chr8_1:83004462-83004481 | Msa1220010:intron | 60.0% |
AGGCTCCGGGTATGCGCCAT+AGG | + | chr8_1:83004052-83004071 | None:intergenic | 65.0% | |
TGGTAAGCGCTCGAGGCTCC+GGG | + | chr8_1:83004065-83004084 | None:intergenic | 65.0% | |
GTGGTAAGCGCTCGAGGCTC+CGG | + | chr8_1:83004066-83004085 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 83002477 | 83005211 | 83002477 | ID=Msa1220010;Name=Msa1220010 |
chr8_1 | mRNA | 83002477 | 83005211 | 83002477 | ID=Msa1220010-mRNA-1;Parent=Msa1220010;Name=Msa1220010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=109|1|1|1|1|1|5|225|403 |
chr8_1 | exon | 83002477 | 83003354 | 83002477 | ID=Msa1220010-mRNA-1:exon:29729;Parent=Msa1220010-mRNA-1 |
chr8_1 | exon | 83003541 | 83003723 | 83003541 | ID=Msa1220010-mRNA-1:exon:29728;Parent=Msa1220010-mRNA-1 |
chr8_1 | exon | 83003905 | 83004035 | 83003905 | ID=Msa1220010-mRNA-1:exon:29727;Parent=Msa1220010-mRNA-1 |
chr8_1 | exon | 83004773 | 83004913 | 83004773 | ID=Msa1220010-mRNA-1:exon:29726;Parent=Msa1220010-mRNA-1 |
chr8_1 | exon | 83004999 | 83005211 | 83004999 | ID=Msa1220010-mRNA-1:exon:29725;Parent=Msa1220010-mRNA-1 |
chr8_1 | five_prime_UTR | 83005103 | 83005211 | 83005103 | ID=Msa1220010-mRNA-1:five_prime_utr;Parent=Msa1220010-mRNA-1 |
chr8_1 | CDS | 83004999 | 83005102 | 83004999 | ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1 |
chr8_1 | CDS | 83004773 | 83004913 | 83004773 | ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1 |
chr8_1 | CDS | 83003905 | 83004035 | 83003905 | ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1 |
chr8_1 | CDS | 83003541 | 83003723 | 83003541 | ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1 |
chr8_1 | CDS | 83002702 | 83003354 | 83002702 | ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1 |
chr8_1 | three_prime_UTR | 83002477 | 83002701 | 83002477 | ID=Msa1220010-mRNA-1:three_prime_utr;Parent=Msa1220010-mRNA-1 |
Gene Sequence |
Protein sequence |