AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220010 MtrunA17_Chr4g0070561 96.278 403 13 1 1 403 1 401 0.0 807
Msa1220010 MtrunA17_Chr5g0394771 54.155 373 152 3 18 390 37 390 4.10e-148 425
Msa1220010 MtrunA17_Chr5g0394751 54.324 370 150 3 21 390 8 358 1.13e-146 420
Msa1220010 MtrunA17_Chr5g0394891 53.704 378 162 3 13 390 4 368 9.44e-146 418
Msa1220010 MtrunA17_Chr5g0394811 54.570 372 152 5 21 390 121 477 6.77e-142 412
Msa1220010 MtrunA17_Chr5g0394811 43.312 157 69 4 27 164 1 156 7.29e-34 131
Msa1220010 MtrunA17_Chr5g0394861 54.155 373 154 5 21 390 12 370 2.21e-141 407
Msa1220010 MtrunA17_Chr5g0394841 52.957 372 160 4 21 390 12 370 5.40e-139 401
Msa1220010 MtrunA17_Chr5g0395841 53.514 370 159 4 21 390 14 370 6.43e-139 401
Msa1220010 MtrunA17_Chr3g0144001 53.175 378 158 5 14 390 3 362 1.90e-137 397
Msa1220010 MtrunA17_Chr5g0394801 46.970 198 67 1 186 383 26 185 6.35e-56 184
Msa1220010 MtrunA17_Chr5g0394791 50.595 168 73 3 21 187 11 169 2.87e-47 160
Msa1220010 MtrunA17_Chr3g0130471 66.667 42 14 0 205 246 1 42 5.56e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220010 AT2G06050.2 73.766 385 97 2 11 391 2 386 0.0 604
Msa1220010 AT2G06050.1 73.766 385 97 2 11 391 2 386 0.0 604
Msa1220010 AT2G06050.3 73.766 385 97 2 11 391 2 386 0.0 604
Msa1220010 AT1G76690.1 51.989 377 168 3 14 390 7 370 2.47e-142 410
Msa1220010 AT1G76680.1 52.255 377 167 3 14 390 5 368 1.41e-140 405
Msa1220010 AT1G76680.2 49.005 402 167 4 14 390 5 393 7.45e-135 392
Msa1220010 AT1G09400.1 50.437 343 151 3 27 369 1 324 3.15e-123 360
Msa1220010 AT1G09400.2 50.704 284 121 3 86 369 1 265 4.01e-99 296
Msa1220010 AT1G17990.1 52.030 271 122 3 18 288 6 268 2.88e-98 294
Msa1220010 AT1G18020.1 52.030 271 122 3 18 288 6 268 2.88e-98 294
Msa1220010 AT1G17990.2 49.446 271 121 4 18 288 6 260 5.17e-90 273

Find 116 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAATCCTTGACTATTTC+TGG 0.074699 8_1:+83003570 None:intergenic
GTGGTTCGGGCCGTTGTTTC+TGG 0.111017 8_1:-83003204 Msa1220010:CDS
TCCATCTCTCCCACTGCTTA+TGG 0.186529 8_1:-83004773 Msa1220010:CDS
TACACACAGGATCCTGTTAT+TGG 0.238161 8_1:-83002766 Msa1220010:CDS
CAAAACATTCTCTTAAGATT+TGG 0.238823 8_1:+83002608 None:intergenic
CGGGCCGTTGTTTCTGGTAT+TGG 0.254686 8_1:-83003198 Msa1220010:CDS
CAACCTCGATATACAGCTTA+TGG 0.287602 8_1:-83003024 Msa1220010:CDS
TTAAACCTTAAAACCAAATC+TGG 0.303799 8_1:+83002829 None:intergenic
TCGATGCAGGTTCTTAATTC+AGG 0.309680 8_1:-83003226 Msa1220010:CDS
GGTTCTTAATTCAGGTGGTT+CGG 0.310782 8_1:-83003218 Msa1220010:CDS
TTTCATCTCTAATCCAGATT+TGG 0.311746 8_1:-83002842 Msa1220010:CDS
GATTCTGATCCACTTGGATT+AGG 0.315458 8_1:-83003120 Msa1220010:CDS
GGGTTTGGTTGTGGATGAAA+TGG 0.321666 8_1:+83003677 None:intergenic
CTCTTGAGTCTCATTTCCTT+TGG 0.330899 8_1:+83002720 None:intergenic
CCACCTCTCTAGAAGGGGTT+TGG 0.330917 8_1:+83003662 None:intergenic
GTTCTTAATTCAGGTGGTTC+GGG 0.333795 8_1:-83003217 Msa1220010:CDS
CCATCTCTCCCACTGCTTAT+GGG 0.338294 8_1:-83004772 Msa1220010:intron
CTCTAGAAGGGGTTTGGTTG+TGG 0.342961 8_1:+83003668 None:intergenic
TGTTCCTCTGAATAAATTCC+AGG 0.349073 8_1:+83004000 None:intergenic
CTCCTCTGAACAAGTATAAC+AGG 0.362982 8_1:-83002798 Msa1220010:CDS
GTTGGTCGTGCATCCCATTC+TGG 0.363613 8_1:-83003904 Msa1220010:intron
TTGAAGTTTGCAATCTTGTA+AGG 0.367147 8_1:+83005011 None:intergenic
TGTGCAGTGGTGGATATAAT+AGG 0.370705 8_1:-83002924 Msa1220010:CDS
GTGGTAAGCGCTCGAGGCTC+CGG 0.373825 8_1:+83003603 None:intergenic
GGTGGATATAATAGGAAGTT+AGG 0.374612 8_1:-83002916 Msa1220010:CDS
AGCTCAAGGTGATGCTGATT+TGG 0.377196 8_1:-83002881 Msa1220010:CDS
GAATTCTCCACCTCTCTAGA+AGG 0.384447 8_1:+83003655 None:intergenic
ATTGATCAATTCTTGAAAGA+TGG 0.389055 8_1:-83003291 Msa1220010:CDS
CGCAGGTTTCCCCATGTACC+TGG 0.393784 8_1:-83004018 Msa1220010:intron
TTCGTACAACAAAACCAAAA+TGG 0.405006 8_1:+83002643 None:intergenic
TAATCGGTGTAGCCAATAAC+AGG 0.415841 8_1:+83002754 None:intergenic
GAACCTAAGAAAAGCTTATG+AGG 0.420831 8_1:-83002956 Msa1220010:CDS
GATGCTGATTTGGTATCATT+TGG 0.426648 8_1:-83002871 Msa1220010:CDS
CTGAATAAATTCCAGGTACA+TGG 0.427423 8_1:+83004007 None:intergenic
TGAAATCGAATGATTATTGA+AGG 0.436371 8_1:+83005181 None:intergenic
AATGATCGAACAGACGAGTA+TGG 0.441181 8_1:-83003264 Msa1220010:CDS
TATTCAGCAAGTGCTGCGTT+TGG 0.442605 8_1:+83004845 None:intergenic
AACGCTCTGCATCTCGTCAT+AGG 0.445839 8_1:+83004878 None:intergenic
TTTGGTGAGGAAAGGATAAT+CGG 0.449437 8_1:+83002738 None:intergenic
ATTGGAGTGCAGGGTGGTGT+TGG 0.449570 8_1:-83004903 Msa1220010:intron
GCTATTAATGCGATTCGAGC+AGG 0.471945 8_1:-83003540 Msa1220010:intron
TTGATCAATTCTTGAAAGAT+GGG 0.478672 8_1:-83003290 Msa1220010:CDS
CTCAAGCCAGATGGTTCCTA+TGG 0.479424 8_1:-83003633 Msa1220010:CDS
ACAAAAGATAATGCTGCCTT+TGG 0.485408 8_1:+83003939 None:intergenic
AGGTTGAGTAACATGAAGAT+AGG 0.492670 8_1:+83003041 None:intergenic
GAAACTGAGGTTACCAGAAT+GGG 0.497238 8_1:+83003891 None:intergenic
AGGCTCCGGGTATGCGCCAT+AGG 0.499161 8_1:+83003617 None:intergenic
GGTTTGGTTGTGGATGAAAT+GGG 0.499316 8_1:+83003678 None:intergenic
TTGATGGAGTCGAAATTCAC+GGG 0.503324 8_1:-83003329 Msa1220010:CDS
GCATCATTGTGATCAATTGC+TGG 0.504056 8_1:+83003147 None:intergenic
TGAAACTGAGGTTACCAGAA+TGG 0.512235 8_1:+83003890 None:intergenic
TTTGATGGAGTCGAAATTCA+CGG 0.512397 8_1:-83003330 Msa1220010:CDS
AGGAGAAAAGAGGGTGGTGC+TGG 0.515328 8_1:+83005031 None:intergenic
TGGTAAGCGCTCGAGGCTCC+GGG 0.517375 8_1:+83003604 None:intergenic
CCCATAAGCAGTGGGAGAGA+TGG 0.517721 8_1:+83004772 None:intergenic
TCATTTCCTTTGGTGAGGAA+AGG 0.518047 8_1:+83002730 None:intergenic
TCTGGAAGTTGATCCCAATC+AGG 0.520097 8_1:-83005141 Msa1220010:five_prime_UTR
CAATCTTGTAAGGAGAAAAG+AGG 0.521873 8_1:+83005021 None:intergenic
GAATCGCATTAATAGCTGAT+TGG 0.525902 8_1:+83003547 None:intergenic
GCTATTGATTCTGATCCACT+TGG 0.530394 8_1:-83003126 Msa1220010:CDS
TATGCGCCATAGGAACCATC+TGG 0.531081 8_1:+83003627 None:intergenic
GTCGAAATTCACGGGGCACA+CGG 0.533112 8_1:-83003321 Msa1220010:CDS
GAGTCTCATTTCCTTTGGTG+AGG 0.533954 8_1:+83002725 None:intergenic
ACGAGATGCAGAGCGTTGAA+TGG 0.535942 8_1:-83004872 Msa1220010:CDS
GAAATCGAATGATTATTGAA+GGG 0.540825 8_1:+83005182 None:intergenic
TTCCTGTTATACTTGTTCAG+AGG 0.544474 8_1:+83002796 None:intergenic
AATTCTCCACCTCTCTAGAA+GGG 0.550426 8_1:+83003656 None:intergenic
TCGAAATTCACGGGGCACAC+GGG 0.550944 8_1:-83003320 Msa1220010:CDS
TGAATAAATTCCAGGTACAT+GGG 0.553359 8_1:+83004008 None:intergenic
TGGTTCCTATGGCGCATACC+CGG 0.554696 8_1:-83003622 Msa1220010:CDS
GTATGACAAGGAAGAAGAAG+AGG 0.555686 8_1:-83002992 Msa1220010:CDS
GAAATGGGTGCAGCACCACC+AGG 0.555752 8_1:+83003693 None:intergenic
CAGAGGAACAAGTGGAGGCA+TGG 0.561445 8_1:-83003987 Msa1220010:CDS
GGTGGATTTCTCATCGGTGA+AGG 0.575119 8_1:-83004800 Msa1220010:CDS
AAATGTAATCTTATATATCG+TGG 0.578530 8_1:-83002580 Msa1220010:three_prime_UTR
GATCACTTGAAAATCGATGC+AGG 0.580483 8_1:-83003239 Msa1220010:CDS
ATTATATACCCATAAGCAGT+GGG 0.587040 8_1:+83004764 None:intergenic
ATGCAGGTTCTTAATTCAGG+TGG 0.588415 8_1:-83003223 Msa1220010:CDS
TCAGAAGTGGTAAGCGCTCG+AGG 0.590830 8_1:+83003597 None:intergenic
ATATAATAGGAAGTTAGGAA+TGG 0.592051 8_1:-83002911 Msa1220010:CDS
GGAATGGAAGCTGTAGCTCA+AGG 0.592444 8_1:-83002895 Msa1220010:CDS
CCAAACCCCTTCTAGAGAGG+TGG 0.592960 8_1:-83003662 Msa1220010:CDS
AGTTCAACAACACAAGTACA+AGG 0.594788 8_1:-83005059 Msa1220010:CDS
TATTTCTGGTATCTCAGAAG+TGG 0.602504 8_1:+83003584 None:intergenic
TACGCTCAAAGATCAACTCC+AGG 0.602812 8_1:-83004821 Msa1220010:CDS
GATTATCCTTTCCTCACCAA+AGG 0.604147 8_1:-83002736 Msa1220010:CDS
GGAACATTCATGTGCAGTGG+TGG 0.609749 8_1:-83002934 Msa1220010:CDS
TTATTCAGAGGAACAAGTGG+AGG 0.610128 8_1:-83003992 Msa1220010:CDS
AATTTATTCAGAGGAACAAG+TGG 0.610952 8_1:-83003995 Msa1220010:CDS
TTTCCATAAGCTGTATATCG+AGG 0.611276 8_1:+83003021 None:intergenic
ATAAGCAGTGGGAGAGATGG+AGG 0.611650 8_1:+83004775 None:intergenic
AAGAAGAGGCTCATTTGATG+AGG 0.613862 8_1:-83002978 Msa1220010:CDS
CAACCAAACCCCTTCTAGAG+AGG 0.615926 8_1:-83003665 Msa1220010:CDS
ATTCTCCACCTCTCTAGAAG+GGG 0.617495 8_1:+83003657 None:intergenic
AACCTAAGAAAAGCTTATGA+GGG 0.618035 8_1:-83002955 Msa1220010:CDS
TGGAGAATTCTCAAGCCAGA+TGG 0.619198 8_1:-83003642 Msa1220010:CDS
CAAAATATATATATTAACAA+TGG 0.622360 8_1:-83005099 Msa1220010:exon
GGTATTGGAGCTGAAAGAGT+TGG 0.624730 8_1:-83003183 Msa1220010:CDS
GAATAAATTCCAGGTACATG+GGG 0.626230 8_1:+83004009 None:intergenic
ACTCCAGGTGGATTTCTCAT+CGG 0.631444 8_1:-83004806 Msa1220010:CDS
AATTATATACCCATAAGCAG+TGG 0.632930 8_1:+83004763 None:intergenic
ACTGCTAAGCCTAATCCAAG+TGG 0.645958 8_1:+83003111 None:intergenic
AGCTCCAATACCAGAAACAA+CGG 0.648152 8_1:+83003194 None:intergenic
TGTGAAGCAGTGTATCAGCC+TGG 0.649524 8_1:-83003711 Msa1220010:intron
GTGGATGCTGCTCATGCCAA+AGG 0.652152 8_1:-83003955 Msa1220010:CDS
GATCGAACAGACGAGTATGG+TGG 0.652328 8_1:-83003261 Msa1220010:CDS
TGAGATACCAGAAATAGTCA+AGG 0.658712 8_1:-83003577 Msa1220010:CDS
TGTACCTGGAATTTATTCAG+AGG 0.660053 8_1:-83004004 Msa1220010:CDS
TCACCGATGAGAAATCCACC+TGG 0.665351 8_1:+83004803 None:intergenic
AATCTTGTAAGGAGAAAAGA+GGG 0.669109 8_1:+83005022 None:intergenic
GGAGGCATGGAGAAATGTCG+TGG 0.680628 8_1:-83003974 Msa1220010:CDS
GCTCAAAGATCAACTCCAGG+TGG 0.683876 8_1:-83004818 Msa1220010:CDS
GAGGGAACATTCATGTGCAG+TGG 0.698747 8_1:-83002937 Msa1220010:CDS
TGATGGAGTCGAAATTCACG+GGG 0.717446 8_1:-83003328 Msa1220010:CDS
GAAGCAGTGTATCAGCCTGG+TGG 0.735693 8_1:-83003708 Msa1220010:intron
CTTGTAAGGAGAAAAGAGGG+TGG 0.760384 8_1:+83005025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATATATATTTTGTGA+TGG + chr8_1:83002564-83002583 None:intergenic 10.0%
!! CAAAATATATATATTAACAA+TGG - chr8_1:83002567-83002586 Msa1220010:three_prime_UTR 10.0%
!!! AAATTTGGATTATTTTTTTA+AGG + chr8_1:83003074-83003093 None:intergenic 10.0%
!!! TGTAATATTTTCATATATTT+AGG + chr8_1:83003597-83003616 None:intergenic 10.0%
!! TATATGAAAATATTACATTA+TGG - chr8_1:83003600-83003619 Msa1220010:CDS 10.0%
!!! TTTTTTTTTTTTTACCATTT+TGG - chr8_1:83005009-83005028 Msa1220010:CDS 10.0%
!! AAACAGTTATAAAGTAATAA+AGG - chr8_1:83003131-83003150 Msa1220010:CDS 15.0%
!!! ATAAAGTAATAAAGGTATAT+TGG - chr8_1:83003139-83003158 Msa1220010:CDS 15.0%
!! TATATAAAAGAAATATAGGA+CGG - chr8_1:83003207-83003226 Msa1220010:CDS 15.0%
!! AGTACATAAAACTAAATAAA+CGG - chr8_1:83003369-83003388 Msa1220010:intron 15.0%
!!! TATTTTCATATATTTAGGAT+TGG + chr8_1:83003592-83003611 None:intergenic 15.0%
!!! AATACTACATTTTTAGATTC+TGG - chr8_1:83002507-83002526 Msa1220010:three_prime_UTR 20.0%
!!! TTTTTTTTCTCTGTTATTGT+GGG - chr8_1:83002714-83002733 Msa1220010:CDS 20.0%
!! AAATAATATTATGTTGATGC+TGG - chr8_1:83003027-83003046 Msa1220010:CDS 20.0%
!! ATACATCTAACAATCAAATT+TGG + chr8_1:83003089-83003108 None:intergenic 20.0%
!!! TTTATCCTTTGAAATTTGTA+AGG + chr8_1:83003184-83003203 None:intergenic 20.0%
!! ACATTATGGTATTGTAATAT+AGG - chr8_1:83003614-83003633 Msa1220010:CDS 20.0%
!! CATTATGGTATTGTAATATA+GGG - chr8_1:83003615-83003634 Msa1220010:CDS 20.0%
!! AAATGTAATCTTATATATCG+TGG - chr8_1:83005086-83005105 Msa1220010:exon 20.0%
! GAAATCGAATGATTATTGAA+GGG + chr8_1:83002487-83002506 None:intergenic 25.0%
! TGAAATCGAATGATTATTGA+AGG + chr8_1:83002488-83002507 None:intergenic 25.0%
!!! GTTTTTTTTCTCTGTTATTG+TGG - chr8_1:83002713-83002732 Msa1220010:CDS 25.0%
! AAAGAAAAAGCTTGAAAAAG+AGG + chr8_1:83002929-83002948 None:intergenic 25.0%
! GACATCAATGAATATAAGTT+AGG + chr8_1:83002980-83002999 None:intergenic 25.0%
! TTTGATTGTTAGATGTATGT+TGG - chr8_1:83003091-83003110 Msa1220010:CDS 25.0%
! TGTATGTTGGTATTTACTAT+TGG - chr8_1:83003104-83003123 Msa1220010:CDS 25.0%
! ATTGTCCTTACAAATTTCAA+AGG - chr8_1:83003176-83003195 Msa1220010:CDS 25.0%
! TTGTAATATAGGGAAATGTT+TGG - chr8_1:83003625-83003644 Msa1220010:CDS 25.0%
! TTCACAATTAAATCATTGAG+TGG + chr8_1:83003941-83003960 None:intergenic 25.0%
! TATTTGTTTACATCTCTTCA+AGG - chr8_1:83004154-83004173 Msa1220010:intron 25.0%
! CTCACAAACATAAAATAGTA+AGG + chr8_1:83004194-83004213 None:intergenic 25.0%
! ATTGATCAATTCTTGAAAGA+TGG - chr8_1:83004375-83004394 Msa1220010:intron 25.0%
! TTGATCAATTCTTGAAAGAT+GGG - chr8_1:83004376-83004395 Msa1220010:intron 25.0%
! ATATAATAGGAAGTTAGGAA+TGG - chr8_1:83004755-83004774 Msa1220010:intron 25.0%
! TTAAACCTTAAAACCAAATC+TGG + chr8_1:83004840-83004859 None:intergenic 25.0%
! CAAAACATTCTCTTAAGATT+TGG + chr8_1:83005061-83005080 None:intergenic 25.0%
! ATGAATTTTCTCTCCTGATT+GGG + chr8_1:83002541-83002560 None:intergenic 30.0%
AATCTTGTAAGGAGAAAAGA+GGG + chr8_1:83002647-83002666 None:intergenic 30.0%
TTGAAGTTTGCAATCTTGTA+AGG + chr8_1:83002658-83002677 None:intergenic 30.0%
! CAAACTTCAACTTTTCTCAT+AGG - chr8_1:83002668-83002687 Msa1220010:three_prime_UTR 30.0%
ATTATATACCCATAAGCAGT+GGG + chr8_1:83002905-83002924 None:intergenic 30.0%
AATTATATACCCATAAGCAG+TGG + chr8_1:83002906-83002925 None:intergenic 30.0%
GAATAGTACTAAAACCATGT+AGG + chr8_1:83003408-83003427 None:intergenic 30.0%
TGAATAAATTCCAGGTACAT+GGG + chr8_1:83003661-83003680 None:intergenic 30.0%
AATTTATTCAGAGGAACAAG+TGG - chr8_1:83003671-83003690 Msa1220010:CDS 30.0%
! GCATTATCTTTTGTCAGTTA+TGG - chr8_1:83003736-83003755 Msa1220010:intron 30.0%
! GTTTTCAATGCAGTTCATTA+AGG + chr8_1:83003828-83003847 None:intergenic 30.0%
AACCTAAGAAAAGCTTATGA+GGG - chr8_1:83004711-83004730 Msa1220010:intron 30.0%
TTTCATCTCTAATCCAGATT+TGG - chr8_1:83004824-83004843 Msa1220010:CDS 30.0%
!!! CTAATCCAGATTTGGTTTTA+AGG - chr8_1:83004832-83004851 Msa1220010:CDS 30.0%
GAAGGAAAAACAACAATCAA+AGG + chr8_1:83004983-83005002 None:intergenic 30.0%
TTCGTACAACAAAACCAAAA+TGG + chr8_1:83005026-83005045 None:intergenic 30.0%
! GATGAATTTTCTCTCCTGAT+TGG + chr8_1:83002542-83002561 None:intergenic 35.0%
AGTTCAACAACACAAGTACA+AGG - chr8_1:83002607-83002626 Msa1220010:three_prime_UTR 35.0%
CAATCTTGTAAGGAGAAAAG+AGG + chr8_1:83002648-83002667 None:intergenic 35.0%
ACTATGATCTGATGTGGTTA+TGG - chr8_1:83002739-83002758 Msa1220010:CDS 35.0%
ATCTGATGTGGTTATGGTAT+TGG - chr8_1:83002745-83002764 Msa1220010:CDS 35.0%
! CATGCATCTGATTTTGTCAA+TGG - chr8_1:83003272-83003291 Msa1220010:CDS 35.0%
AGTTGCGACAAATGAATCAA+GGG + chr8_1:83003305-83003324 None:intergenic 35.0%
AAGTTGCGACAAATGAATCA+AGG + chr8_1:83003306-83003325 None:intergenic 35.0%
GTCAAACAAAAAGTCCTACA+TGG - chr8_1:83003391-83003410 Msa1220010:intron 35.0%
TTAAACACAATCAGCCTCAT+TGG + chr8_1:83003443-83003462 None:intergenic 35.0%
ATCAACGACAAAAAGAACAC+AGG + chr8_1:83003486-83003505 None:intergenic 35.0%
GAATAAATTCCAGGTACATG+GGG + chr8_1:83003660-83003679 None:intergenic 35.0%
CTGAATAAATTCCAGGTACA+TGG + chr8_1:83003662-83003681 None:intergenic 35.0%
TGTACCTGGAATTTATTCAG+AGG - chr8_1:83003662-83003681 Msa1220010:CDS 35.0%
TGTTCCTCTGAATAAATTCC+AGG + chr8_1:83003669-83003688 None:intergenic 35.0%
ACAAAAGATAATGCTGCCTT+TGG + chr8_1:83003730-83003749 None:intergenic 35.0%
! TTTTGTCAGTTATGGCATGT+TGG - chr8_1:83003744-83003763 Msa1220010:intron 35.0%
! CATTTAGGATAGTGAAACTG+AGG + chr8_1:83003791-83003810 None:intergenic 35.0%
! GATGAACTTGTGAAGCATTT+AGG + chr8_1:83003806-83003825 None:intergenic 35.0%
!! TATTTCTGGTATCTCAGAAG+TGG + chr8_1:83004085-83004104 None:intergenic 35.0%
TGAGATACCAGAAATAGTCA+AGG - chr8_1:83004089-83004108 Msa1220010:intron 35.0%
CGATAATCCTTGACTATTTC+TGG + chr8_1:83004099-83004118 None:intergenic 35.0%
GAATCGCATTAATAGCTGAT+TGG + chr8_1:83004122-83004141 None:intergenic 35.0%
ATGAAATGAGACGTACATAC+AGG - chr8_1:83004312-83004331 Msa1220010:intron 35.0%
TTTGATGGAGTCGAAATTCA+CGG - chr8_1:83004336-83004355 Msa1220010:intron 35.0%
AACAATCTCCAAAAAGAGCT+TGG - chr8_1:83004591-83004610 Msa1220010:intron 35.0%
! GTTTTCTACCAAGCTCTTTT+TGG + chr8_1:83004602-83004621 None:intergenic 35.0%
AGGTTGAGTAACATGAAGAT+AGG + chr8_1:83004628-83004647 None:intergenic 35.0%
TTTCCATAAGCTGTATATCG+AGG + chr8_1:83004648-83004667 None:intergenic 35.0%
TGGAAAAACTGAGTATGACA+AGG - chr8_1:83004662-83004681 Msa1220010:intron 35.0%
GAACCTAAGAAAAGCTTATG+AGG - chr8_1:83004710-83004729 Msa1220010:intron 35.0%
! TTCCCTCATAAGCTTTTCTT+AGG + chr8_1:83004716-83004735 None:intergenic 35.0%
GGTGGATATAATAGGAAGTT+AGG - chr8_1:83004750-83004769 Msa1220010:intron 35.0%
!! GATGCTGATTTGGTATCATT+TGG - chr8_1:83004795-83004814 Msa1220010:CDS 35.0%
TTCCTGTTATACTTGTTCAG+AGG + chr8_1:83004873-83004892 None:intergenic 35.0%
TTTGGTGAGGAAAGGATAAT+CGG + chr8_1:83004931-83004950 None:intergenic 35.0%
!!! GGTTTTGTTGTACGAACAAT+TGG - chr8_1:83005030-83005049 Msa1220010:CDS 35.0%
! CATCTGATTTTGTCAATGGC+CGG - chr8_1:83003276-83003295 Msa1220010:CDS 40.0%
TTATTCAGAGGAACAAGTGG+AGG - chr8_1:83003674-83003693 Msa1220010:CDS 40.0%
GAAACTGAGGTTACCAGAAT+GGG + chr8_1:83003778-83003797 None:intergenic 40.0%
TGAAACTGAGGTTACCAGAA+TGG + chr8_1:83003779-83003798 None:intergenic 40.0%
! GGTTTGGTTGTGGATGAAAT+GGG + chr8_1:83003991-83004010 None:intergenic 40.0%
! AATTCTCCACCTCTCTAGAA+GGG + chr8_1:83004013-83004032 None:intergenic 40.0%
!! GACGTACATACAGGTTTTGA+TGG - chr8_1:83004321-83004340 Msa1220010:intron 40.0%
TTGATGGAGTCGAAATTCAC+GGG - chr8_1:83004337-83004356 Msa1220010:intron 40.0%
AATGATCGAACAGACGAGTA+TGG - chr8_1:83004402-83004421 Msa1220010:intron 40.0%
GATCACTTGAAAATCGATGC+AGG - chr8_1:83004427-83004446 Msa1220010:intron 40.0%
TCGATGCAGGTTCTTAATTC+AGG - chr8_1:83004440-83004459 Msa1220010:intron 40.0%
ATGCAGGTTCTTAATTCAGG+TGG - chr8_1:83004443-83004462 Msa1220010:intron 40.0%
GGTTCTTAATTCAGGTGGTT+CGG - chr8_1:83004448-83004467 Msa1220010:intron 40.0%
GTTCTTAATTCAGGTGGTTC+GGG - chr8_1:83004449-83004468 Msa1220010:intron 40.0%
AGCTCCAATACCAGAAACAA+CGG + chr8_1:83004475-83004494 None:intergenic 40.0%
GCATCATTGTGATCAATTGC+TGG + chr8_1:83004522-83004541 None:intergenic 40.0%
!! GCTATTGATTCTGATCCACT+TGG - chr8_1:83004540-83004559 Msa1220010:intron 40.0%
GATTCTGATCCACTTGGATT+AGG - chr8_1:83004546-83004565 Msa1220010:intron 40.0%
CAACCTCGATATACAGCTTA+TGG - chr8_1:83004642-83004661 Msa1220010:intron 40.0%
GTATGACAAGGAAGAAGAAG+AGG - chr8_1:83004674-83004693 Msa1220010:intron 40.0%
AAGAAGAGGCTCATTTGATG+AGG - chr8_1:83004688-83004707 Msa1220010:intron 40.0%
!! TGTGCAGTGGTGGATATAAT+AGG - chr8_1:83004742-83004761 Msa1220010:intron 40.0%
CTCCTCTGAACAAGTATAAC+AGG - chr8_1:83004868-83004887 Msa1220010:CDS 40.0%
! CAGGAAGACATTTTACACAC+AGG - chr8_1:83004887-83004906 Msa1220010:CDS 40.0%
TACACACAGGATCCTGTTAT+TGG - chr8_1:83004900-83004919 Msa1220010:intron 40.0%
TAATCGGTGTAGCCAATAAC+AGG + chr8_1:83004915-83004934 None:intergenic 40.0%
GATTATCCTTTCCTCACCAA+AGG - chr8_1:83004930-83004949 Msa1220010:intron 40.0%
TCATTTCCTTTGGTGAGGAA+AGG + chr8_1:83004939-83004958 None:intergenic 40.0%
CTCTTGAGTCTCATTTCCTT+TGG + chr8_1:83004949-83004968 None:intergenic 40.0%
! TCTGGAAGTTGATCCCAATC+AGG - chr8_1:83002525-83002544 Msa1220010:three_prime_UTR 45.0%
CTTGTAAGGAGAAAAGAGGG+TGG + chr8_1:83002644-83002663 None:intergenic 45.0%
TGGGTGACTATGATCTGATG+TGG - chr8_1:83002733-83002752 Msa1220010:CDS 45.0%
! TGGTTATGGTATTGGAGTGC+AGG - chr8_1:83002753-83002772 Msa1220010:CDS 45.0%
! GGTTATGGTATTGGAGTGCA+GGG - chr8_1:83002754-83002773 Msa1220010:CDS 45.0%
! TATTCAGCAAGTGCTGCGTT+TGG + chr8_1:83002824-83002843 None:intergenic 45.0%
TACGCTCAAAGATCAACTCC+AGG - chr8_1:83002845-83002864 Msa1220010:CDS 45.0%
! ACTCCAGGTGGATTTCTCAT+CGG - chr8_1:83002860-83002879 Msa1220010:CDS 45.0%
ACAAATGAATCAAGGGTGGC+CGG + chr8_1:83003298-83003317 None:intergenic 45.0%
TGCGACAAATGAATCAAGGG+TGG + chr8_1:83003302-83003321 None:intergenic 45.0%
TCTATCGCTACCAACCAATG+AGG - chr8_1:83003426-83003445 Msa1220010:intron 45.0%
ACACAATCAGCCTCATTGGT+TGG + chr8_1:83003439-83003458 None:intergenic 45.0%
TATAGGGAAATGTTTGGCGC+AGG - chr8_1:83003631-83003650 Msa1220010:CDS 45.0%
! GGGTTTGGTTGTGGATGAAA+TGG + chr8_1:83003992-83004011 None:intergenic 45.0%
! ATTCTCCACCTCTCTAGAAG+GGG + chr8_1:83004012-83004031 None:intergenic 45.0%
GAATTCTCCACCTCTCTAGA+AGG + chr8_1:83004014-83004033 None:intergenic 45.0%
TGGAGAATTCTCAAGCCAGA+TGG - chr8_1:83004024-83004043 Msa1220010:intron 45.0%
GCTATTAATGCGATTCGAGC+AGG - chr8_1:83004126-83004145 Msa1220010:intron 45.0%
ATACTCGTGTTGCATCTGCA+CGG - chr8_1:83004238-83004257 Msa1220010:intron 45.0%
TGATGGAGTCGAAATTCACG+GGG - chr8_1:83004338-83004357 Msa1220010:intron 45.0%
! GGTATTGGAGCTGAAAGAGT+TGG - chr8_1:83004483-83004502 Msa1220010:intron 45.0%
ACTGCTAAGCCTAATCCAAG+TGG + chr8_1:83004558-83004577 None:intergenic 45.0%
! AGCTCAAGGTGATGCTGATT+TGG - chr8_1:83004785-83004804 Msa1220010:CDS 45.0%
GAGTCTCATTTCCTTTGGTG+AGG + chr8_1:83004944-83004963 None:intergenic 45.0%
!! AAAATATATAAAAGAAATAT+AGG - chr8_1:83003203-83003222 Msa1220010:CDS 5.0%
!! AAAAAAAAAAAAAAAAAAGA+AGG + chr8_1:83005001-83005020 None:intergenic 5.0%
! TATGGTATTGGAGTGCAGGG+TGG - chr8_1:83002757-83002776 Msa1220010:CDS 50.0%
AACGCTCTGCATCTCGTCAT+AGG + chr8_1:83002791-83002810 None:intergenic 50.0%
!! ACGAGATGCAGAGCGTTGAA+TGG - chr8_1:83002794-83002813 Msa1220010:CDS 50.0%
GCTCAAAGATCAACTCCAGG+TGG - chr8_1:83002848-83002867 Msa1220010:CDS 50.0%
TCACCGATGAGAAATCCACC+TGG + chr8_1:83002866-83002885 None:intergenic 50.0%
! GGTGGATTTCTCATCGGTGA+AGG - chr8_1:83002866-83002885 Msa1220010:CDS 50.0%
ATAAGCAGTGGGAGAGATGG+AGG + chr8_1:83002894-83002913 None:intergenic 50.0%
TCCATCTCTCCCACTGCTTA+TGG - chr8_1:83002893-83002912 Msa1220010:CDS 50.0%
CCATCTCTCCCACTGCTTAT+GGG - chr8_1:83002894-83002913 Msa1220010:CDS 50.0%
TGTGAAGCAGTGTATCAGCC+TGG - chr8_1:83003955-83003974 Msa1220010:CDS 50.0%
! CTCTAGAAGGGGTTTGGTTG+TGG + chr8_1:83004001-83004020 None:intergenic 50.0%
! CAACCAAACCCCTTCTAGAG+AGG - chr8_1:83004001-83004020 Msa1220010:CDS 50.0%
CTCAAGCCAGATGGTTCCTA+TGG - chr8_1:83004033-83004052 Msa1220010:intron 50.0%
TATGCGCCATAGGAACCATC+TGG + chr8_1:83004042-83004061 None:intergenic 50.0%
GTGCAGATGCAACACGAGTA+TGG + chr8_1:83004239-83004258 None:intergenic 50.0%
TACTCGTGTTGCATCTGCAC+GGG - chr8_1:83004239-83004258 Msa1220010:intron 50.0%
TGTTGCATCTGCACGGGTAT+GGG - chr8_1:83004245-83004264 Msa1220010:intron 50.0%
GATCGAACAGACGAGTATGG+TGG - chr8_1:83004405-83004424 Msa1220010:intron 50.0%
GAGGGAACATTCATGTGCAG+TGG - chr8_1:83004729-83004748 Msa1220010:intron 50.0%
GGAACATTCATGTGCAGTGG+TGG - chr8_1:83004732-83004751 Msa1220010:intron 50.0%
GGAATGGAAGCTGTAGCTCA+AGG - chr8_1:83004771-83004790 Msa1220010:intron 50.0%
AGGAGAAAAGAGGGTGGTGC+TGG + chr8_1:83002638-83002657 None:intergenic 55.0%
ATTGGAGTGCAGGGTGGTGT+TGG - chr8_1:83002763-83002782 Msa1220010:CDS 55.0%
CCCATAAGCAGTGGGAGAGA+TGG + chr8_1:83002897-83002916 None:intergenic 55.0%
CAGAGGAACAAGTGGAGGCA+TGG - chr8_1:83003679-83003698 Msa1220010:CDS 55.0%
! GGAGGCATGGAGAAATGTCG+TGG - chr8_1:83003692-83003711 Msa1220010:CDS 55.0%
GTGGATGCTGCTCATGCCAA+AGG - chr8_1:83003711-83003730 Msa1220010:intron 55.0%
GTTGGTCGTGCATCCCATTC+TGG - chr8_1:83003762-83003781 Msa1220010:intron 55.0%
GAAGCAGTGTATCAGCCTGG+TGG - chr8_1:83003958-83003977 Msa1220010:CDS 55.0%
! CCACCTCTCTAGAAGGGGTT+TGG + chr8_1:83004007-83004026 None:intergenic 55.0%
! CCAAACCCCTTCTAGAGAGG+TGG - chr8_1:83004004-83004023 Msa1220010:CDS 55.0%
TGGTTCCTATGGCGCATACC+CGG - chr8_1:83004044-83004063 Msa1220010:intron 55.0%
TCAGAAGTGGTAAGCGCTCG+AGG + chr8_1:83004072-83004091 None:intergenic 55.0%
GTGTTGCATCTGCACGGGTA+TGG - chr8_1:83004244-83004263 Msa1220010:intron 55.0%
GTCGAAATTCACGGGGCACA+CGG - chr8_1:83004345-83004364 Msa1220010:intron 55.0%
TCGAAATTCACGGGGCACAC+GGG - chr8_1:83004346-83004365 Msa1220010:intron 55.0%
!! CGGGCCGTTGTTTCTGGTAT+TGG - chr8_1:83004468-83004487 Msa1220010:intron 55.0%
CGCAGGTTTCCCCATGTACC+TGG - chr8_1:83003648-83003667 Msa1220010:CDS 60.0%
GAAATGGGTGCAGCACCACC+AGG + chr8_1:83003976-83003995 None:intergenic 60.0%
! GTGGTTCGGGCCGTTGTTTC+TGG - chr8_1:83004462-83004481 Msa1220010:intron 60.0%
AGGCTCCGGGTATGCGCCAT+AGG + chr8_1:83004052-83004071 None:intergenic 65.0%
TGGTAAGCGCTCGAGGCTCC+GGG + chr8_1:83004065-83004084 None:intergenic 65.0%
GTGGTAAGCGCTCGAGGCTC+CGG + chr8_1:83004066-83004085 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 83002477 83005211 83002477 ID=Msa1220010;Name=Msa1220010
chr8_1 mRNA 83002477 83005211 83002477 ID=Msa1220010-mRNA-1;Parent=Msa1220010;Name=Msa1220010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=109|1|1|1|1|1|5|225|403
chr8_1 exon 83002477 83003354 83002477 ID=Msa1220010-mRNA-1:exon:29729;Parent=Msa1220010-mRNA-1
chr8_1 exon 83003541 83003723 83003541 ID=Msa1220010-mRNA-1:exon:29728;Parent=Msa1220010-mRNA-1
chr8_1 exon 83003905 83004035 83003905 ID=Msa1220010-mRNA-1:exon:29727;Parent=Msa1220010-mRNA-1
chr8_1 exon 83004773 83004913 83004773 ID=Msa1220010-mRNA-1:exon:29726;Parent=Msa1220010-mRNA-1
chr8_1 exon 83004999 83005211 83004999 ID=Msa1220010-mRNA-1:exon:29725;Parent=Msa1220010-mRNA-1
chr8_1 five_prime_UTR 83005103 83005211 83005103 ID=Msa1220010-mRNA-1:five_prime_utr;Parent=Msa1220010-mRNA-1
chr8_1 CDS 83004999 83005102 83004999 ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1
chr8_1 CDS 83004773 83004913 83004773 ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1
chr8_1 CDS 83003905 83004035 83003905 ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1
chr8_1 CDS 83003541 83003723 83003541 ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1
chr8_1 CDS 83002702 83003354 83002702 ID=Msa1220010-mRNA-1:cds;Parent=Msa1220010-mRNA-1
chr8_1 three_prime_UTR 83002477 83002701 83002477 ID=Msa1220010-mRNA-1:three_prime_utr;Parent=Msa1220010-mRNA-1
Gene Sequence

>Msa1220010

ATGGCAGAGTACAATAATTCAAGTTCAACAACACAAGTACAAGGAGACACCAGCACCACCCTCTTTTCTCCTTACAAGATTGCAAACTTCAACTTTTCTCATAGGGTGGTGTTGGCACCTATGACGAGATGCAGAGCGTTGAATGGTATTCCAAACGCAGCACTTGCTGAATACTACGCTCAAAGATCAACTCCAGGTGGATTTCTCATCGGTGAAGGAACCTCCATCTCTCCCACTGCTTATGGGTTTCCCCATGTACCTGGAATTTATTCAGAGGAACAAGTGGAGGCATGGAGAAATGTCGTGGATGCTGCTCATGCCAAAGGCAGCATTATCTTTTGTCAGTTATGGCATGTTGGTCGTGCATCCCATTCTGTGTATCAGCCTGGTGGTGCTGCACCCATTTCATCCACAACCAAACCCCTTCTAGAGAGGTGGAGAATTCTCAAGCCAGATGGTTCCTATGGCGCATACCCGGAGCCTCGAGCGCTTACCACTTCTGAGATACCAGAAATAGTCAAGGATTATCGCCAATCAGCTATTAATGCGATTCGAGCAGGTTTTGATGGAGTCGAAATTCACGGGGCACACGGGTATCTGATTGATCAATTCTTGAAAGATGGGATCAATGATCGAACAGACGAGTATGGTGGATCACTTGAAAATCGATGCAGGTTCTTAATTCAGGTGGTTCGGGCCGTTGTTTCTGGTATTGGAGCTGAAAGAGTTGGTGTCAGAATTTCACCAGCAATTGATCACAATGATGCTATTGATTCTGATCCACTTGGATTAGGCTTAGCAGTGATTGAGAGACTAAACAATCTCCAAAAAGAGCTTGGTAGAAAACTCACCTATCTTCATGTTACTCAACCTCGATATACAGCTTATGGAAAAACTGAGTATGACAAGGAAGAAGAAGAGGCTCATTTGATGAGGAACCTAAGAAAAGCTTATGAGGGAACATTCATGTGCAGTGGTGGATATAATAGGAAGTTAGGAATGGAAGCTGTAGCTCAAGGTGATGCTGATTTGGTATCATTTGGTCGTCTTTTCATCTCTAATCCAGATTTGGTTTTAAGGTTTAAGCTAAATGCTCCTCTGAACAAGTATAACAGGAAGACATTTTACACACAGGATCCTGTTATTGGCTACACCGATTATCCTTTCCTCACCAAAGGAAATGAGACTCAAGAGCTAAATGCACGCCTTTGA

Protein sequence

>Msa1220010

MAEYNNSSSTTQVQGDTSTTLFSPYKIANFNFSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLIGEGTSISPTAYGFPHVPGIYSEEQVEAWRNVVDAAHAKGSIIFCQLWHVGRASHSVYQPGGAAPISSTTKPLLERWRILKPDGSYGAYPEPRALTTSEIPEIVKDYRQSAINAIRAGFDGVEIHGAHGYLIDQFLKDGINDRTDEYGGSLENRCRFLIQVVRAVVSGIGAERVGVRISPAIDHNDAIDSDPLGLGLAVIERLNNLQKELGRKLTYLHVTQPRYTAYGKTEYDKEEEEAHLMRNLRKAYEGTFMCSGGYNRKLGMEAVAQGDADLVSFGRLFISNPDLVLRFKLNAPLNKYNRKTFYTQDPVIGYTDYPFLTKGNETQELNARL*