Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334880 | A0A445G4D5 | 61.186 | 371 | 73 | 7 | 1 | 371 | 1 | 300 | 1.29e-113 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748170 | Msa1334880 | 0.809182 | 2.146946e-50 | -8.615850e-47 |
| Msa0162130 | Msa1334880 | 0.807015 | 6.214337e-50 | -8.615850e-47 |
| Msa0987370 | Msa1334880 | 0.811006 | 8.687275e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334880 | MtrunA17_Chr4g0059561 | 97.753 | 178 | 4 | 0 | 194 | 371 | 193 | 370 | 1.06e-112 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334880 | AT3G48120.1 | 57.962 | 157 | 53 | 3 | 223 | 371 | 177 | 328 | 2.40e-54 | 182 |
| Msa1334880 | AT3G48120.2 | 68.750 | 80 | 24 | 1 | 223 | 301 | 177 | 256 | 9.02e-32 | 120 |
Find 143 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTCATTCTCCCTTTC+TGG | 0.028985 | 8_4:-55672218 | None:intergenic |
| CTATATGCTACCGGTTAAAA+AGG | 0.187158 | 8_4:+55672610 | Msa1334880:three_prime_UTR |
| AACACATTGGTCAGAGTTTC+CGG | 0.190322 | 8_4:+55671972 | Msa1334880:CDS |
| AATTGATGGTTATGATAATA+TGG | 0.252897 | 8_4:+55669361 | Msa1334880:CDS |
| CATCATGAGCAGCTTGAATT+TGG | 0.265651 | 8_4:-55672139 | None:intergenic |
| GTAGAGAGAGGTATAGAGAT+AGG | 0.290515 | 8_4:+55669051 | Msa1334880:CDS |
| CCATGTATACAGCTTGTATA+TGG | 0.302575 | 8_4:+55672552 | Msa1334880:three_prime_UTR |
| AAGCTTCAGCTTTCTGAAAC+TGG | 0.307935 | 8_4:+55669587 | Msa1334880:CDS |
| GGCGGGTGGGGCGGTGGTGG+AGG | 0.313022 | 8_4:-55668877 | None:intergenic |
| TGGGGCGGGTGGGGCGGTGG+TGG | 0.315870 | 8_4:-55668880 | None:intergenic |
| TTCAGATGGTTGTTTGATAT+CGG | 0.319233 | 8_4:+55668624 | None:intergenic |
| CGAGGAAGGGGAAGAATGTT+GGG | 0.320435 | 8_4:+55669321 | Msa1334880:CDS |
| GGATGGGGCGGGTGGGGCGG+TGG | 0.327133 | 8_4:-55668883 | None:intergenic |
| GGAGGCAGTGGTGGTGGAGG+AGG | 0.341053 | 8_4:-55668859 | None:intergenic |
| CGATCACGCCAAGACCCTTT+TGG | 0.344872 | 8_4:-55672375 | None:intergenic |
| TTGAATTTGGTCTTCCCGTT+TGG | 0.348867 | 8_4:-55672126 | None:intergenic |
| GGAATCGGATGGGGCGGGTG+GGG | 0.350155 | 8_4:-55668889 | None:intergenic |
| GAAGGAGGTTGATAATAAAA+AGG | 0.353437 | 8_4:+55672235 | Msa1334880:CDS |
| TGGGGCGGTGGTGGAGGCAG+TGG | 0.354004 | 8_4:-55668871 | None:intergenic |
| TCGGAATCGGATGGGGCGGG+TGG | 0.355327 | 8_4:-55668891 | None:intergenic |
| ACGAGAGATGAACCGGGTTT+AGG | 0.357159 | 8_4:-55668795 | None:intergenic |
| AGAAACCTACAACCGAATCT+AGG | 0.362617 | 8_4:+55668955 | Msa1334880:CDS |
| GAAACCCTAGATTCGGTTGT+AGG | 0.364001 | 8_4:-55668960 | None:intergenic |
| AGCAAACTGCACACTAATTC+CGG | 0.364065 | 8_4:-55672499 | None:intergenic |
| ATCGGATGGGGCGGGTGGGG+CGG | 0.372455 | 8_4:-55668886 | None:intergenic |
| CATCAGCATCGCTTTGGCTT+CGG | 0.383871 | 8_4:-55669139 | None:intergenic |
| ATACCTCGACTGCGGAAAAC+CGG | 0.386542 | 8_4:-55671991 | None:intergenic |
| GGTGGTGGAGGCAGTGGTGG+TGG | 0.386747 | 8_4:-55668865 | None:intergenic |
| GAAAGGGAGTGAAACGAGGA+AGG | 0.393055 | 8_4:+55669307 | Msa1334880:CDS |
| GGGGTAGAGATAGGAAGAAA+AGG | 0.395987 | 8_4:+55669168 | Msa1334880:CDS |
| CAGGTGCTGGCCAGGCCAAA+AGG | 0.399273 | 8_4:+55672360 | Msa1334880:intron |
| AAGGGAAAGGGAAAGGGAAA+GGG | 0.399518 | 8_4:+55669187 | Msa1334880:CDS |
| ACGAGGAAGGGGAAGAATGT+TGG | 0.404824 | 8_4:+55669320 | Msa1334880:CDS |
| GGCGGTGGTGGAGGCAGTGG+TGG | 0.405531 | 8_4:-55668868 | None:intergenic |
| GGTGGAGGCAGTGGTGGTGG+AGG | 0.405776 | 8_4:-55668862 | None:intergenic |
| AGTGAAATCAACTGATGTTA+AGG | 0.406402 | 8_4:+55669277 | Msa1334880:CDS |
| AGTGGTGGTGGAGGAGGAAG+AGG | 0.410539 | 8_4:-55668853 | None:intergenic |
| GGTTCCTATATGTCTAAGTT+GGG | 0.410794 | 8_4:+55672523 | Msa1334880:three_prime_UTR |
| CTGTCGGAATCGGATGGGGC+GGG | 0.413929 | 8_4:-55668894 | None:intergenic |
| AAAGGGAAAGGGAAAGGGAA+AGG | 0.414118 | 8_4:+55669186 | Msa1334880:CDS |
| GGGAAAGAGAGAAGGGCAGA+AGG | 0.416744 | 8_4:+55669207 | Msa1334880:CDS |
| AGGGAAAGGGAAAGAGAGAA+GGG | 0.419128 | 8_4:+55669200 | Msa1334880:CDS |
| TGGTTCCTATATGTCTAAGT+TGG | 0.420743 | 8_4:+55672522 | Msa1334880:three_prime_UTR |
| AAGGGAAAGGGAAAGAGAGA+AGG | 0.426520 | 8_4:+55669199 | Msa1334880:CDS |
| GATTATGCGAAATTAATTGA+TGG | 0.428439 | 8_4:+55669347 | Msa1334880:CDS |
| GGAAGAAACGAGAGATGAAC+CGG | 0.431725 | 8_4:-55668802 | None:intergenic |
| AAAAGGGTCTTGGCGTGATC+GGG | 0.434065 | 8_4:+55672377 | Msa1334880:CDS |
| CTGGTGGGAGGTGGAGGAGC+CGG | 0.434369 | 8_4:-55672179 | None:intergenic |
| GTACTGCTGGTGGGAGGTGG+AGG | 0.435649 | 8_4:-55672185 | None:intergenic |
| GAAGAAAAGGGAAAGGGAAA+GGG | 0.435661 | 8_4:+55669181 | Msa1334880:CDS |
| TTCAGATAGAGGCGTGGGCT+GGG | 0.436642 | 8_4:+55670880 | Msa1334880:CDS |
| TACAACCGAATCTAGGGTTT+CGG | 0.436791 | 8_4:+55668962 | Msa1334880:CDS |
| AAGGGAGTGAAACGAGGAAG+GGG | 0.440438 | 8_4:+55669309 | Msa1334880:CDS |
| CGGAATCGGATGGGGCGGGT+GGG | 0.440840 | 8_4:-55668890 | None:intergenic |
| ATAGGGATTCGAGGAGGAGT+AGG | 0.441565 | 8_4:+55669069 | Msa1334880:CDS |
| GGAAGAAAAGGGAAAGGGAA+AGG | 0.446423 | 8_4:+55669180 | Msa1334880:CDS |
| ATTCAGATAGAGGCGTGGGC+TGG | 0.448197 | 8_4:+55670879 | Msa1334880:CDS |
| AGAAAGCTGAAGCTTCATCT+TGG | 0.450194 | 8_4:-55669579 | None:intergenic |
| GGGTAGAGATAGGAAGAAAA+GGG | 0.450896 | 8_4:+55669169 | Msa1334880:CDS |
| TCTGTACTGCTGGTGGGAGG+TGG | 0.457401 | 8_4:-55672188 | None:intergenic |
| ATGGTGAGAGGGGTAGAGAT+AGG | 0.457624 | 8_4:+55669159 | Msa1334880:CDS |
| TTTATCCGAAACCCTAGATT+CGG | 0.458465 | 8_4:-55668967 | None:intergenic |
| AAAGCCCAACTTAGACATAT+AGG | 0.458596 | 8_4:-55672527 | None:intergenic |
| ATATTCTTATATAGTCCAAA+CGG | 0.460108 | 8_4:+55672111 | Msa1334880:intron |
| TCTCACCATCAGCATCGCTT+TGG | 0.460132 | 8_4:-55669145 | None:intergenic |
| TAGAGAGAGGTATAGAGATA+GGG | 0.461666 | 8_4:+55669052 | Msa1334880:CDS |
| TGTCAGAAGCATCACCTTCG+AGG | 0.465407 | 8_4:-55672422 | None:intergenic |
| TGGTTCACTATCTGTACTGC+TGG | 0.466270 | 8_4:-55672198 | None:intergenic |
| TGAAGCTATGTTTGGTGCTC+CGG | 0.467036 | 8_4:+55672160 | Msa1334880:CDS |
| AGCAGTATATGAAACTCGTT+TGG | 0.473108 | 8_4:+55672635 | Msa1334880:three_prime_UTR |
| TGGCCAGGCCAAAAGGGTCT+TGG | 0.473736 | 8_4:+55672367 | Msa1334880:CDS |
| AAAGAGAGAAGGGCAGAAGG+AGG | 0.473924 | 8_4:+55669210 | Msa1334880:CDS |
| GGTATAGAGATAGGGATTCG+AGG | 0.476297 | 8_4:+55669060 | Msa1334880:CDS |
| GCTCATGATGAAGCTATGTT+TGG | 0.476321 | 8_4:+55672152 | Msa1334880:CDS |
| TACAGATAGTGAACCAGAAA+GGG | 0.477138 | 8_4:+55672205 | Msa1334880:CDS |
| AAAGGGAGTGAAACGAGGAA+GGG | 0.479210 | 8_4:+55669308 | Msa1334880:CDS |
| CAAAAGGGTCTTGGCGTGAT+CGG | 0.479467 | 8_4:+55672376 | Msa1334880:CDS |
| TTGTTTGATATCGGTAAAGA+TGG | 0.480615 | 8_4:+55668633 | None:intergenic |
| CACTCAAGAGGCTTGAAACC+AGG | 0.482529 | 8_4:-55672259 | None:intergenic |
| TCAACTGATGTTAAGGAAAG+AGG | 0.483183 | 8_4:+55669284 | Msa1334880:CDS |
| GAATTAGTGTGCAGTTTGCT+TGG | 0.486409 | 8_4:+55672502 | Msa1334880:three_prime_UTR |
| TTGGCTTTCACTCTTTCCGC+AGG | 0.488586 | 8_4:-55669560 | None:intergenic |
| GAGATAGGAAGAAAAGGGAA+AGG | 0.492253 | 8_4:+55669174 | Msa1334880:CDS |
| AATAGTGTGATAGAAGAAGA+TGG | 0.495333 | 8_4:+55668662 | Msa1334880:exon |
| TACTCACTGTTTCACTCAAG+AGG | 0.496510 | 8_4:-55672271 | None:intergenic |
| CTTGACGATGAGGAAGTTGA+AGG | 0.498228 | 8_4:+55670932 | Msa1334880:CDS |
| TATTCTTATATAGTCCAAAC+GGG | 0.502188 | 8_4:+55672112 | Msa1334880:intron |
| AGGTGCTGGCCAGGCCAAAA+GGG | 0.502509 | 8_4:+55672361 | Msa1334880:intron |
| GCAAAGTTCAAACAAGGTCT+CGG | 0.513719 | 8_4:+55668741 | Msa1334880:CDS |
| CCATATACAAGCTGTATACA+TGG | 0.514723 | 8_4:-55672552 | None:intergenic |
| GCTGCACAGGATTCAGATAG+AGG | 0.516469 | 8_4:+55670869 | Msa1334880:intron |
| CTGACCAATGTGTTTGACTA+AGG | 0.517094 | 8_4:-55671963 | None:intergenic |
| AATAACAATTACATAGAAGT+AGG | 0.518541 | 8_4:-55672577 | None:intergenic |
| AGATAGGAAGAAAAGGGAAA+GGG | 0.523195 | 8_4:+55669175 | Msa1334880:CDS |
| GATGTTAAGGAAAGAGGGAA+AGG | 0.525705 | 8_4:+55669290 | Msa1334880:CDS |
| AGATATAGTGATCGTGATTG+TGG | 0.526935 | 8_4:+55669110 | Msa1334880:CDS |
| GAAACCTACAACCGAATCTA+GGG | 0.529978 | 8_4:+55668956 | Msa1334880:CDS |
| ACTTTCGACTGCAGCTGCAC+AGG | 0.532548 | 8_4:+55670856 | Msa1334880:intron |
| TCTGTCGGAATCGGATGGGG+CGG | 0.537908 | 8_4:-55668895 | None:intergenic |
| TTCACTATCTGTACTGCTGG+TGG | 0.537948 | 8_4:-55672195 | None:intergenic |
| ATATCCATGTGACATTTGAC+CGG | 0.542506 | 8_4:-55672451 | None:intergenic |
| CAACTTCCTCATCGTCAAGA+GGG | 0.542980 | 8_4:-55670928 | None:intergenic |
| GTACAGATAGTGAACCAGAA+AGG | 0.544469 | 8_4:+55672204 | Msa1334880:CDS |
| CAACTGATGTTAAGGAAAGA+GGG | 0.549093 | 8_4:+55669285 | Msa1334880:CDS |
| TTTGACGAACTGCGAGAGGA+AGG | 0.550789 | 8_4:-55668829 | None:intergenic |
| GAGGGAAAGGGAGTGAAACG+AGG | 0.558448 | 8_4:+55669303 | Msa1334880:CDS |
| GGCGTCGTTTGATGTGGAAG+TGG | 0.558472 | 8_4:-55668769 | None:intergenic |
| ATGTTAAGGAAAGAGGGAAA+GGG | 0.561002 | 8_4:+55669291 | Msa1334880:CDS |
| AGGAACGGCGTCGTTTGATG+TGG | 0.563234 | 8_4:-55668775 | None:intergenic |
| TACGACGAACTCACTCGTAA+AGG | 0.565432 | 8_4:+55668708 | Msa1334880:CDS |
| TCACTATCTGTACTGCTGGT+GGG | 0.572173 | 8_4:-55672194 | None:intergenic |
| CAGGATTCAGATAGAGGCGT+GGG | 0.574446 | 8_4:+55670875 | Msa1334880:CDS |
| GATGCTTCTGACAGAAAAGC+CGG | 0.574498 | 8_4:+55672432 | Msa1334880:three_prime_UTR |
| AAGCGATGCTGATGGTGAGA+GGG | 0.589626 | 8_4:+55669148 | Msa1334880:CDS |
| TCAACTTCCTCATCGTCAAG+AGG | 0.593869 | 8_4:-55670929 | None:intergenic |
| TCAGACCTACGTTGTTTACG+TGG | 0.598848 | 8_4:-55669254 | None:intergenic |
| AAAGCGATGCTGATGGTGAG+AGG | 0.605228 | 8_4:+55669147 | Msa1334880:CDS |
| ACATAGAGTTGGCACCTCGA+AGG | 0.613936 | 8_4:+55672408 | Msa1334880:exon |
| AACGACGCCGTTCCTAAACC+CGG | 0.614053 | 8_4:+55668783 | Msa1334880:CDS |
| AGGCTTTGACGAACTGCGAG+AGG | 0.620368 | 8_4:-55668833 | None:intergenic |
| AACTTCCTCATCGTCAAGAG+GGG | 0.625246 | 8_4:-55670927 | None:intergenic |
| CGAAGCCAAAGCGATGCTGA+TGG | 0.626519 | 8_4:+55669140 | Msa1334880:CDS |
| AGATGAACCGGGTTTAGGAA+CGG | 0.628243 | 8_4:-55668790 | None:intergenic |
| AGAAAGGGAGAATGAGAAGG+AGG | 0.628302 | 8_4:+55672220 | Msa1334880:CDS |
| GGATGCCCCTCTTGACGATG+AGG | 0.631840 | 8_4:+55670922 | Msa1334880:CDS |
| GAACTCACTCGTAAAGGTGA+AGG | 0.637725 | 8_4:+55668714 | Msa1334880:CDS |
| ACCAGAAAGGGAGAATGAGA+AGG | 0.638848 | 8_4:+55672217 | Msa1334880:CDS |
| AGCGATGCTGATGGTGAGAG+GGG | 0.639422 | 8_4:+55669149 | Msa1334880:CDS |
| GAACTGCGAGAGGAAGGAAG+AGG | 0.641357 | 8_4:-55668823 | None:intergenic |
| GAGGAAGGGGAAGAATGTTG+GGG | 0.643868 | 8_4:+55669322 | Msa1334880:CDS |
| GGAGCTGCAAAGTTCAAACA+AGG | 0.657123 | 8_4:+55668735 | Msa1334880:CDS |
| CTATCTGTACTGCTGGTGGG+AGG | 0.660799 | 8_4:-55672191 | None:intergenic |
| ATAGAGATAGGGATTCGAGG+AGG | 0.661152 | 8_4:+55669063 | Msa1334880:CDS |
| GGGTTCGTCAGACATAGAGT+TGG | 0.662243 | 8_4:+55672397 | Msa1334880:exon |
| TGATCATCAATAGGCACCTG+CGG | 0.667105 | 8_4:+55669544 | Msa1334880:intron |
| GCATCCTTAGTCAAACACAT+TGG | 0.671835 | 8_4:+55671959 | Msa1334880:CDS |
| ACAGGATTCAGATAGAGGCG+TGG | 0.672662 | 8_4:+55670874 | Msa1334880:CDS |
| AAAGCCGGTCAAATGTCACA+TGG | 0.679678 | 8_4:+55672447 | Msa1334880:three_prime_UTR |
| GAAGAAACGAGAGATGAACC+GGG | 0.695732 | 8_4:-55668801 | None:intergenic |
| GCAGGAGTAGGAGTAGAGAG+AGG | 0.698624 | 8_4:+55669039 | Msa1334880:CDS |
| GGAGCGATTTGAGTTCAACA+AGG | 0.698879 | 8_4:+55670901 | Msa1334880:CDS |
| TAAGGAAGATACCTCGACTG+CGG | 0.706100 | 8_4:-55671999 | None:intergenic |
| TTTCGCCACGTAAACAACGT+AGG | 0.740188 | 8_4:+55669249 | Msa1334880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTGTATAAGAATT+TGG | + | chr8_4:55669873-55669892 | Msa1334880:intron | 10.0% |
| !! | TATTATTTGTATAAGAATTT+GGG | + | chr8_4:55669874-55669893 | Msa1334880:intron | 10.0% |
| !!! | TTTTGTTATATAATAAAACA+TGG | - | chr8_4:55670626-55670645 | None:intergenic | 10.0% |
| !!! | TTTCTGAAAAATTAACTTTT+TGG | + | chr8_4:55669814-55669833 | Msa1334880:intron | 15.0% |
| !!! | TTTTTTAAAAAGTAAGGTAT+GGG | - | chr8_4:55670669-55670688 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAAAAGTAAGGTA+TGG | - | chr8_4:55670670-55670689 | None:intergenic | 15.0% |
| !!! | GTTGTGTTAATTTTTTTTAT+TGG | + | chr8_4:55670831-55670850 | Msa1334880:intron | 15.0% |
| !! | ATACCATAAATAATAATGAA+CGG | - | chr8_4:55671395-55671414 | None:intergenic | 15.0% |
| !!! | TATTTTACTCATAAAAGATA+AGG | - | chr8_4:55672020-55672039 | None:intergenic | 15.0% |
| !!! | AATTGATGGTTATGATAATA+TGG | + | chr8_4:55669361-55669380 | Msa1334880:CDS | 20.0% |
| !!! | GTTTTTGTTTTTTGTTGAAT+TGG | + | chr8_4:55669414-55669433 | Msa1334880:intron | 20.0% |
| !! | TATGATTTATCAATGAGTTA+TGG | + | chr8_4:55669476-55669495 | Msa1334880:intron | 20.0% |
| !! | AAGTAAATAGAAGATCTTAT+TGG | + | chr8_4:55669611-55669630 | Msa1334880:intron | 20.0% |
| !!! | AGATTACAATGTAATTCTTT+TGG | + | chr8_4:55670098-55670117 | Msa1334880:intron | 20.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | - | chr8_4:55670440-55670459 | None:intergenic | 20.0% |
| !!! | TTTTTGCTCATTATTGTATT+AGG | + | chr8_4:55670440-55670459 | Msa1334880:intron | 20.0% |
| !!! | AAAAAGTTGAAATTTAGAGT+TGG | - | chr8_4:55670555-55670574 | None:intergenic | 20.0% |
| !!! | CGACAATTTTTTAAAAAGTA+AGG | - | chr8_4:55670675-55670694 | None:intergenic | 20.0% |
| !! | GATTTCTATCATAATCAAAA+AGG | - | chr8_4:55671047-55671066 | None:intergenic | 20.0% |
| !! | AAAGTAAAAAGATGAAAGAT+AGG | - | chr8_4:55671282-55671301 | None:intergenic | 20.0% |
| !!! | TTTCGGTTTAGATATTATTT+TGG | + | chr8_4:55671537-55671556 | Msa1334880:intron | 20.0% |
| !!! | GATTATCATAGTTTTCTTAT+TGG | + | chr8_4:55671593-55671612 | Msa1334880:intron | 20.0% |
| !! | TTTGGGTATTAACTTAATAT+CGG | + | chr8_4:55671897-55671916 | Msa1334880:intron | 20.0% |
| !! | ATATTCTTATATAGTCCAAA+CGG | + | chr8_4:55672111-55672130 | Msa1334880:intron | 20.0% |
| !! | AATAACAATTACATAGAAGT+AGG | - | chr8_4:55672580-55672599 | None:intergenic | 20.0% |
| ! | GATTATGCGAAATTAATTGA+TGG | + | chr8_4:55669347-55669366 | Msa1334880:CDS | 25.0% |
| ! | TATGACTTATGAATGAGTTA+TGG | + | chr8_4:55669508-55669527 | Msa1334880:intron | 25.0% |
| ! | AATATACCTATGTGCATAAA+TGG | + | chr8_4:55669654-55669673 | Msa1334880:intron | 25.0% |
| ! | TAAAAACCATTTATGCACAT+AGG | - | chr8_4:55669663-55669682 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTTGATATTC+TGG | + | chr8_4:55669844-55669863 | Msa1334880:intron | 25.0% |
| ! | ATATATATGAGGTAGATGTT+AGG | + | chr8_4:55669914-55669933 | Msa1334880:intron | 25.0% |
| ! | CCCAAAAATCAAATAATACT+CGG | - | chr8_4:55669998-55670017 | None:intergenic | 25.0% |
| !!! | CCGAGTATTATTTGATTTTT+GGG | + | chr8_4:55669995-55670014 | Msa1334880:intron | 25.0% |
| !!! | CGAGTATTATTTGATTTTTG+GGG | + | chr8_4:55669996-55670015 | Msa1334880:intron | 25.0% |
| ! | TTACATTGTAATCTGTTGAA+TGG | - | chr8_4:55670092-55670111 | None:intergenic | 25.0% |
| !! | TGAATAAACTGTCTCATTTT+TGG | - | chr8_4:55670810-55670829 | None:intergenic | 25.0% |
| ! | AATACATTATGAGTGCAAAT+GGG | - | chr8_4:55671015-55671034 | None:intergenic | 25.0% |
| ! | CTATCATAATCAAAAAGGAT+TGG | - | chr8_4:55671042-55671061 | None:intergenic | 25.0% |
| ! | AAAAAGATGAAAGATAGGAT+AGG | - | chr8_4:55671277-55671296 | None:intergenic | 25.0% |
| ! | GTTCCGTTCATTATTATTTA+TGG | + | chr8_4:55671389-55671408 | Msa1334880:intron | 25.0% |
| ! | AAATGAGAAATGTAAAACAC+AGG | - | chr8_4:55671520-55671539 | None:intergenic | 25.0% |
| !! | GTGTTTTACATTTCTCATTT+CGG | + | chr8_4:55671520-55671539 | Msa1334880:intron | 25.0% |
| !!! | ATATTATTTTGGTCTCCATT+TGG | + | chr8_4:55671548-55671567 | Msa1334880:intron | 25.0% |
| ! | ATAAACACGCAATAATTTAC+AGG | - | chr8_4:55671715-55671734 | None:intergenic | 25.0% |
| ! | CAGTAATCAAACTGATTATT+TGG | - | chr8_4:55672044-55672063 | None:intergenic | 25.0% |
| ! | CAAATAATCAGTTTGATTAC+TGG | + | chr8_4:55672042-55672061 | Msa1334880:intron | 25.0% |
| ! | TATTCTTATATAGTCCAAAC+GGG | + | chr8_4:55672112-55672131 | Msa1334880:intron | 25.0% |
| ! | TTTGTATACTACAAAGAACA+TGG | + | chr8_4:55672295-55672314 | Msa1334880:intron | 25.0% |
| !!! | TAATCACTGTATTTTGTTTC+AGG | + | chr8_4:55672341-55672360 | Msa1334880:intron | 25.0% |
| AATAGTGTGATAGAAGAAGA+TGG | + | chr8_4:55668662-55668681 | Msa1334880:exon | 30.0% | |
| !!! | TGAGCTTGTTTTGAATTGAT+TGG | - | chr8_4:55668932-55668951 | None:intergenic | 30.0% |
| AGTGAAATCAACTGATGTTA+AGG | + | chr8_4:55669277-55669296 | Msa1334880:CDS | 30.0% | |
| TACCTCATATATATCACTAG+CGG | - | chr8_4:55669908-55669927 | None:intergenic | 30.0% | |
| GATGCAAAAATAGAGACATA+TGG | + | chr8_4:55669960-55669979 | Msa1334880:intron | 30.0% | |
| !! | GCCGAGTATTATTTGATTTT+TGG | + | chr8_4:55669994-55670013 | Msa1334880:intron | 30.0% |
| TAGAGACAACTAATTCTGTT+AGG | - | chr8_4:55670177-55670196 | None:intergenic | 30.0% | |
| AAGCATAGGTACTTGTAAAA+TGG | + | chr8_4:55670375-55670394 | Msa1334880:intron | 30.0% | |
| TGTATTAGGAGTGAAATTTG+TGG | + | chr8_4:55670454-55670473 | Msa1334880:intron | 30.0% | |
| ! | TCTGGTCTGTTTGATAATAT+TGG | + | chr8_4:55670955-55670974 | Msa1334880:intron | 30.0% |
| GAATACATTATGAGTGCAAA+TGG | - | chr8_4:55671016-55671035 | None:intergenic | 30.0% | |
| ATTCCTTATTAGTTACAGAC+TGG | + | chr8_4:55671337-55671356 | Msa1334880:intron | 30.0% | |
| AAACCAGTCTGTAACTAATA+AGG | - | chr8_4:55671343-55671362 | None:intergenic | 30.0% | |
| TTGTCTTACAGCTCAAAAAA+AGG | - | chr8_4:55671434-55671453 | None:intergenic | 30.0% | |
| ACATTACCAATAAAGCCAAA+TGG | - | chr8_4:55671566-55671585 | None:intergenic | 30.0% | |
| TTGTGATTGACAATGAGTAA+TGG | + | chr8_4:55671870-55671889 | Msa1334880:intron | 30.0% | |
| !! | GAAGGAGGTTGATAATAAAA+AGG | + | chr8_4:55672235-55672254 | Msa1334880:CDS | 30.0% |
| AAAGAACATGGATACACATA+GGG | + | chr8_4:55672307-55672326 | Msa1334880:intron | 30.0% | |
| ! | ATGTCATTCAATTTTGCAAC+CGG | + | chr8_4:55672480-55672499 | Msa1334880:three_prime_UTR | 30.0% |
| ! | TTTTTAACCGGTAGCATATA+GGG | - | chr8_4:55672611-55672630 | None:intergenic | 30.0% |
| ! | TATATGCTACCGGTTAAAAA+GGG | + | chr8_4:55672611-55672630 | Msa1334880:three_prime_UTR | 30.0% |
| TTTATCCGAAACCCTAGATT+CGG | - | chr8_4:55668970-55668989 | None:intergenic | 35.0% | |
| ATAGAAGAAAAAGACGAAGC+AGG | + | chr8_4:55669021-55669040 | Msa1334880:CDS | 35.0% | |
| ! | TAGAGAGAGGTATAGAGATA+GGG | + | chr8_4:55669052-55669071 | Msa1334880:CDS | 35.0% |
| AGATATAGTGATCGTGATTG+TGG | + | chr8_4:55669110-55669129 | Msa1334880:CDS | 35.0% | |
| AGATAGGAAGAAAAGGGAAA+GGG | + | chr8_4:55669175-55669194 | Msa1334880:CDS | 35.0% | |
| TCAACTGATGTTAAGGAAAG+AGG | + | chr8_4:55669284-55669303 | Msa1334880:CDS | 35.0% | |
| CAACTGATGTTAAGGAAAGA+GGG | + | chr8_4:55669285-55669304 | Msa1334880:CDS | 35.0% | |
| ATGTTAAGGAAAGAGGGAAA+GGG | + | chr8_4:55669291-55669310 | Msa1334880:CDS | 35.0% | |
| GCATGTTTGTGATCATCAAT+AGG | + | chr8_4:55669535-55669554 | Msa1334880:intron | 35.0% | |
| !! | AATTTCCAGAGCTTGTTGTT+TGG | + | chr8_4:55669787-55669806 | Msa1334880:intron | 35.0% |
| !! | ATTTCCAGAGCTTGTTGTTT+GGG | + | chr8_4:55669788-55669807 | Msa1334880:intron | 35.0% |
| GCAAAAATAGAGACATATGG+TGG | + | chr8_4:55669963-55669982 | Msa1334880:intron | 35.0% | |
| !! | TTTTGGGGAAGTTTTACAGA+AGG | + | chr8_4:55670011-55670030 | Msa1334880:intron | 35.0% |
| ! | GCAAGTGAATAAGTAATGGA+AGG | - | chr8_4:55670149-55670168 | None:intergenic | 35.0% |
| TGAGGCAAGTGAATAAGTAA+TGG | - | chr8_4:55670153-55670172 | None:intergenic | 35.0% | |
| TTACAAGTACCTATGCTTCA+GGG | - | chr8_4:55670373-55670392 | None:intergenic | 35.0% | |
| TTTACAAGTACCTATGCTTC+AGG | - | chr8_4:55670374-55670393 | None:intergenic | 35.0% | |
| TACCTGTATCTATGCAACAT+AGG | + | chr8_4:55670709-55670728 | Msa1334880:intron | 35.0% | |
| !!! | TGTCTCATTTTTGGCAAACT+AGG | - | chr8_4:55670801-55670820 | None:intergenic | 35.0% |
| CTAATAAGGAATAGCAGAAC+TGG | - | chr8_4:55671329-55671348 | None:intergenic | 35.0% | |
| CTATTACATTGTGGGAATGT+AGG | - | chr8_4:55671367-55671386 | None:intergenic | 35.0% | |
| CGGAACTTCTATTACATTGT+GGG | - | chr8_4:55671375-55671394 | None:intergenic | 35.0% | |
| ACGGAACTTCTATTACATTG+TGG | - | chr8_4:55671376-55671395 | None:intergenic | 35.0% | |
| AGAAATGTAAAACACAGGCA+CGG | - | chr8_4:55671515-55671534 | None:intergenic | 35.0% | |
| AACATGCACAAAACGTTAAG+AGG | - | chr8_4:55671626-55671645 | None:intergenic | 35.0% | |
| GCAGCATTCAATAGTAAGAA+AGG | - | chr8_4:55671672-55671691 | None:intergenic | 35.0% | |
| ACAAGCAAATATAGCTAGAC+AGG | - | chr8_4:55671854-55671873 | None:intergenic | 35.0% | |
| TGATTGACAATGAGTAATGG+TGG | + | chr8_4:55671873-55671892 | Msa1334880:intron | 35.0% | |
| GATTGACAATGAGTAATGGT+GGG | + | chr8_4:55671874-55671893 | Msa1334880:intron | 35.0% | |
| TACAGATAGTGAACCAGAAA+GGG | + | chr8_4:55672205-55672224 | Msa1334880:CDS | 35.0% | |
| !! | GGTTGATAATAAAAAGGACC+TGG | + | chr8_4:55672241-55672260 | Msa1334880:CDS | 35.0% |
| CAAAGAACATGGATACACAT+AGG | + | chr8_4:55672306-55672325 | Msa1334880:intron | 35.0% | |
| ATATCCATGTGACATTTGAC+CGG | - | chr8_4:55672454-55672473 | None:intergenic | 35.0% | |
| TGGTTCCTATATGTCTAAGT+TGG | + | chr8_4:55672522-55672541 | Msa1334880:three_prime_UTR | 35.0% | |
| GGTTCCTATATGTCTAAGTT+GGG | + | chr8_4:55672523-55672542 | Msa1334880:three_prime_UTR | 35.0% | |
| AAAGCCCAACTTAGACATAT+AGG | - | chr8_4:55672530-55672549 | None:intergenic | 35.0% | |
| CCATATACAAGCTGTATACA+TGG | - | chr8_4:55672555-55672574 | None:intergenic | 35.0% | |
| CCATGTATACAGCTTGTATA+TGG | + | chr8_4:55672552-55672571 | Msa1334880:three_prime_UTR | 35.0% | |
| ! | TTTTCAACCCTATATGCTAC+CGG | + | chr8_4:55672601-55672620 | Msa1334880:three_prime_UTR | 35.0% |
| ! | CTTTTTAACCGGTAGCATAT+AGG | - | chr8_4:55672612-55672631 | None:intergenic | 35.0% |
| ! | CTATATGCTACCGGTTAAAA+AGG | + | chr8_4:55672610-55672629 | Msa1334880:three_prime_UTR | 35.0% |
| ! | ATACTGCTTCCCTTTTTAAC+CGG | - | chr8_4:55672623-55672642 | None:intergenic | 35.0% |
| AGCAGTATATGAAACTCGTT+TGG | + | chr8_4:55672635-55672654 | Msa1334880:three_prime_UTR | 35.0% | |
| GCAAAGTTCAAACAAGGTCT+CGG | + | chr8_4:55668741-55668760 | Msa1334880:CDS | 40.0% | |
| ! | ATTTTCTGTCGGAATCGGAT+GGG | - | chr8_4:55668902-55668921 | None:intergenic | 40.0% |
| ! | CTGAGATTTTCTGTCGGAAT+CGG | - | chr8_4:55668907-55668926 | None:intergenic | 40.0% |
| ! | TTGGAGCTGAGATTTTCTGT+CGG | - | chr8_4:55668913-55668932 | None:intergenic | 40.0% |
| AGAAACCTACAACCGAATCT+AGG | + | chr8_4:55668955-55668974 | Msa1334880:CDS | 40.0% | |
| GAAACCTACAACCGAATCTA+GGG | + | chr8_4:55668956-55668975 | Msa1334880:CDS | 40.0% | |
| ! | TACAACCGAATCTAGGGTTT+CGG | + | chr8_4:55668962-55668981 | Msa1334880:CDS | 40.0% |
| ! | GTAGAGAGAGGTATAGAGAT+AGG | + | chr8_4:55669051-55669070 | Msa1334880:CDS | 40.0% |
| GGGTAGAGATAGGAAGAAAA+GGG | + | chr8_4:55669169-55669188 | Msa1334880:CDS | 40.0% | |
| GAGATAGGAAGAAAAGGGAA+AGG | + | chr8_4:55669174-55669193 | Msa1334880:CDS | 40.0% | |
| GAAGAAAAGGGAAAGGGAAA+GGG | + | chr8_4:55669181-55669200 | Msa1334880:CDS | 40.0% | |
| GATGTTAAGGAAAGAGGGAA+AGG | + | chr8_4:55669290-55669309 | Msa1334880:CDS | 40.0% | |
| AGAAAGCTGAAGCTTCATCT+TGG | - | chr8_4:55669582-55669601 | None:intergenic | 40.0% | |
| !! | AAGCTTCAGCTTTCTGAAAC+TGG | + | chr8_4:55669587-55669606 | Msa1334880:CDS | 40.0% |
| TGCCGCTAGTGATATATATG+AGG | + | chr8_4:55669903-55669922 | Msa1334880:intron | 40.0% | |
| TATGAGGTAGATGTTAGGTC+TGG | + | chr8_4:55669919-55669938 | Msa1334880:intron | 40.0% | |
| ! | GTAATGGAAGGAGAGAATCT+AGG | - | chr8_4:55670137-55670156 | None:intergenic | 40.0% |
| CAACTAATTCTGTTAGGCTG+AGG | - | chr8_4:55670171-55670190 | None:intergenic | 40.0% | |
| TGTGGCAAGTTTACTCAAAG+AGG | - | chr8_4:55670256-55670275 | None:intergenic | 40.0% | |
| AGTAAACTTGCCACACCTTT+GGG | + | chr8_4:55670261-55670280 | Msa1334880:intron | 40.0% | |
| ! | AAATGGTGAAGTACCCATAC+TGG | + | chr8_4:55670392-55670411 | Msa1334880:intron | 40.0% |
| ! | AATGGTGAAGTACCCATACT+GGG | + | chr8_4:55670393-55670412 | Msa1334880:intron | 40.0% |
| GTCCTATGTTGCATAGATAC+AGG | - | chr8_4:55670714-55670733 | None:intergenic | 40.0% | |
| TCTATGCAACATAGGACGTA+TGG | + | chr8_4:55670717-55670736 | Msa1334880:intron | 40.0% | |
| AATGTTTCATACTCGAAGCG+CGG | + | chr8_4:55670759-55670778 | Msa1334880:intron | 40.0% | |
| AACAGCATCACATGCCTAAA+CGG | - | chr8_4:55671177-55671196 | None:intergenic | 40.0% | |
| CTGTTGAGAGAATGTTATGC+AGG | + | chr8_4:55671192-55671211 | Msa1334880:intron | 40.0% | |
| AGAATGTTATGCAGGAGTGA+GGG | + | chr8_4:55671200-55671219 | Msa1334880:intron | 40.0% | |
| ATTCGGTTGGAACCCTTTAA+AGG | + | chr8_4:55671232-55671251 | Msa1334880:intron | 40.0% | |
| TTCGGTTGGAACCCTTTAAA+GGG | + | chr8_4:55671233-55671252 | Msa1334880:intron | 40.0% | |
| AGAAGCCTAGTCCCTTTAAA+GGG | - | chr8_4:55671247-55671266 | None:intergenic | 40.0% | |
| AGATGCTTGTTCTGCATTCT+TGG | + | chr8_4:55671471-55671490 | Msa1334880:intron | 40.0% | |
| !! | TGGTCTCCATTTGGCTTTAT+TGG | + | chr8_4:55671557-55671576 | Msa1334880:intron | 40.0% |
| !! | ACAATGAGTAATGGTGGGTT+TGG | + | chr8_4:55671879-55671898 | Msa1334880:intron | 40.0% |
| !! | CAATGAGTAATGGTGGGTTT+GGG | + | chr8_4:55671880-55671899 | Msa1334880:intron | 40.0% |
| GCATCCTTAGTCAAACACAT+TGG | + | chr8_4:55671959-55671978 | Msa1334880:CDS | 40.0% | |
| CTGACCAATGTGTTTGACTA+AGG | - | chr8_4:55671966-55671985 | None:intergenic | 40.0% | |
| AACACATTGGTCAGAGTTTC+CGG | + | chr8_4:55671972-55671991 | Msa1334880:CDS | 40.0% | |
| ! | TTGAATTTGGTCTTCCCGTT+TGG | - | chr8_4:55672129-55672148 | None:intergenic | 40.0% |
| CATCATGAGCAGCTTGAATT+TGG | - | chr8_4:55672142-55672161 | None:intergenic | 40.0% | |
| GCTCATGATGAAGCTATGTT+TGG | + | chr8_4:55672152-55672171 | Msa1334880:CDS | 40.0% | |
| GTACAGATAGTGAACCAGAA+AGG | + | chr8_4:55672204-55672223 | Msa1334880:CDS | 40.0% | |
| TACTCACTGTTTCACTCAAG+AGG | - | chr8_4:55672274-55672293 | None:intergenic | 40.0% | |
| !! | CTGTATTTTGTTTCAGGTGC+TGG | + | chr8_4:55672347-55672366 | Msa1334880:intron | 40.0% |
| AGCAAACTGCACACTAATTC+CGG | - | chr8_4:55672502-55672521 | None:intergenic | 40.0% | |
| ! | GAATTAGTGTGCAGTTTGCT+TGG | + | chr8_4:55672502-55672521 | Msa1334880:three_prime_UTR | 40.0% |
| TACGACGAACTCACTCGTAA+AGG | + | chr8_4:55668708-55668727 | Msa1334880:CDS | 45.0% | |
| GAACTCACTCGTAAAGGTGA+AGG | + | chr8_4:55668714-55668733 | Msa1334880:CDS | 45.0% | |
| GGAGCTGCAAAGTTCAAACA+AGG | + | chr8_4:55668735-55668754 | Msa1334880:CDS | 45.0% | |
| AGATGAACCGGGTTTAGGAA+CGG | - | chr8_4:55668793-55668812 | None:intergenic | 45.0% | |
| GAAGAAACGAGAGATGAACC+GGG | - | chr8_4:55668804-55668823 | None:intergenic | 45.0% | |
| GGAAGAAACGAGAGATGAAC+CGG | - | chr8_4:55668805-55668824 | None:intergenic | 45.0% | |
| ! | TTTTCTGTCGGAATCGGATG+GGG | - | chr8_4:55668901-55668920 | None:intergenic | 45.0% |
| ! | GATTTTCTGTCGGAATCGGA+TGG | - | chr8_4:55668903-55668922 | None:intergenic | 45.0% |
| ! | GAAACCCTAGATTCGGTTGT+AGG | - | chr8_4:55668963-55668982 | None:intergenic | 45.0% |
| GAAAAAGACGAAGCAGGAGT+AGG | + | chr8_4:55669027-55669046 | Msa1334880:CDS | 45.0% | |
| GGTATAGAGATAGGGATTCG+AGG | + | chr8_4:55669060-55669079 | Msa1334880:CDS | 45.0% | |
| ATAGAGATAGGGATTCGAGG+AGG | + | chr8_4:55669063-55669082 | Msa1334880:CDS | 45.0% | |
| GGGGTAGAGATAGGAAGAAA+AGG | + | chr8_4:55669168-55669187 | Msa1334880:CDS | 45.0% | |
| GGAAGAAAAGGGAAAGGGAA+AGG | + | chr8_4:55669180-55669199 | Msa1334880:CDS | 45.0% | |
| AAAGGGAAAGGGAAAGGGAA+AGG | + | chr8_4:55669186-55669205 | Msa1334880:CDS | 45.0% | |
| AAGGGAAAGGGAAAGGGAAA+GGG | + | chr8_4:55669187-55669206 | Msa1334880:CDS | 45.0% | |
| AAGGGAAAGGGAAAGAGAGA+AGG | + | chr8_4:55669199-55669218 | Msa1334880:CDS | 45.0% | |
| AGGGAAAGGGAAAGAGAGAA+GGG | + | chr8_4:55669200-55669219 | Msa1334880:CDS | 45.0% | |
| TTTCGCCACGTAAACAACGT+AGG | + | chr8_4:55669249-55669268 | Msa1334880:CDS | 45.0% | |
| TCAGACCTACGTTGTTTACG+TGG | - | chr8_4:55669257-55669276 | None:intergenic | 45.0% | |
| AAAGGGAGTGAAACGAGGAA+GGG | + | chr8_4:55669308-55669327 | Msa1334880:CDS | 45.0% | |
| TGATCATCAATAGGCACCTG+CGG | + | chr8_4:55669544-55669563 | Msa1334880:intron | 45.0% | |
| AAACGAGTACACAGCAGCAA+AGG | - | chr8_4:55669753-55669772 | None:intergenic | 45.0% | |
| AAGACCCAAACAACAAGCTC+TGG | - | chr8_4:55669795-55669814 | None:intergenic | 45.0% | |
| ! | GAAGGAGAGAATCTAGGACT+AGG | - | chr8_4:55670131-55670150 | None:intergenic | 45.0% |
| CATGCTTCCTCACTTGTTCT+CGG | + | chr8_4:55670219-55670238 | Msa1334880:intron | 45.0% | |
| AGTGTATCCGAGAACAAGTG+AGG | - | chr8_4:55670229-55670248 | None:intergenic | 45.0% | |
| GAGTAAACTTGCCACACCTT+TGG | + | chr8_4:55670260-55670279 | Msa1334880:intron | 45.0% | |
| GACTTTATCTCATGGCCCAA+AGG | - | chr8_4:55670279-55670298 | None:intergenic | 45.0% | |
| TTGGGCCATGAGATAAAGTC+TGG | + | chr8_4:55670279-55670298 | Msa1334880:intron | 45.0% | |
| TGGCCTGCTATAAACTCCTT+AGG | + | chr8_4:55670299-55670318 | Msa1334880:intron | 45.0% | |
| ! | GGAGCGATTTGAGTTCAACA+AGG | + | chr8_4:55670901-55670920 | Msa1334880:CDS | 45.0% |
| AACTTCCTCATCGTCAAGAG+GGG | - | chr8_4:55670930-55670949 | None:intergenic | 45.0% | |
| CAACTTCCTCATCGTCAAGA+GGG | - | chr8_4:55670931-55670950 | None:intergenic | 45.0% | |
| TCAACTTCCTCATCGTCAAG+AGG | - | chr8_4:55670932-55670951 | None:intergenic | 45.0% | |
| CTTGACGATGAGGAAGTTGA+AGG | + | chr8_4:55670932-55670951 | Msa1334880:CDS | 45.0% | |
| TTGGGCAATGTTTACGCAGT+TGG | - | chr8_4:55671140-55671159 | None:intergenic | 45.0% | |
| TGCGTAAACATTGCCCAAGT+TGG | + | chr8_4:55671142-55671161 | Msa1334880:intron | 45.0% | |
| GAGAATGTTATGCAGGAGTG+AGG | + | chr8_4:55671199-55671218 | Msa1334880:intron | 45.0% | |
| ! | TGGAACCCTTTAAAGGGACT+AGG | + | chr8_4:55671239-55671258 | Msa1334880:intron | 45.0% |
| GAGAAGCCTAGTCCCTTTAA+AGG | - | chr8_4:55671248-55671267 | None:intergenic | 45.0% | |
| ! | GTTTTGTGCATGTTGTCGAG+TGG | + | chr8_4:55671632-55671651 | Msa1334880:intron | 45.0% |
| TAAGGAAGATACCTCGACTG+CGG | - | chr8_4:55672002-55672021 | None:intergenic | 45.0% | |
| !! | TGAAGCTATGTTTGGTGCTC+CGG | + | chr8_4:55672160-55672179 | Msa1334880:CDS | 45.0% |
| TCACTATCTGTACTGCTGGT+GGG | - | chr8_4:55672197-55672216 | None:intergenic | 45.0% | |
| TTCACTATCTGTACTGCTGG+TGG | - | chr8_4:55672198-55672217 | None:intergenic | 45.0% | |
| TGGTTCACTATCTGTACTGC+TGG | - | chr8_4:55672201-55672220 | None:intergenic | 45.0% | |
| ACCAGAAAGGGAGAATGAGA+AGG | + | chr8_4:55672217-55672236 | Msa1334880:CDS | 45.0% | |
| TCCTTCTCATTCTCCCTTTC+TGG | - | chr8_4:55672221-55672240 | None:intergenic | 45.0% | |
| AGAAAGGGAGAATGAGAAGG+AGG | + | chr8_4:55672220-55672239 | Msa1334880:CDS | 45.0% | |
| CATGGATACACATAGGGTCT+TGG | + | chr8_4:55672313-55672332 | Msa1334880:intron | 45.0% | |
| GATGCTTCTGACAGAAAAGC+CGG | + | chr8_4:55672432-55672451 | Msa1334880:three_prime_UTR | 45.0% | |
| AAAGCCGGTCAAATGTCACA+TGG | + | chr8_4:55672447-55672466 | Msa1334880:three_prime_UTR | 45.0% | |
| ACGAGAGATGAACCGGGTTT+AGG | - | chr8_4:55668798-55668817 | None:intergenic | 50.0% | |
| TTTGACGAACTGCGAGAGGA+AGG | - | chr8_4:55668832-55668851 | None:intergenic | 50.0% | |
| ATAGGGATTCGAGGAGGAGT+AGG | + | chr8_4:55669069-55669088 | Msa1334880:CDS | 50.0% | |
| ! | CATCAGCATCGCTTTGGCTT+CGG | - | chr8_4:55669142-55669161 | None:intergenic | 50.0% |
| TCTCACCATCAGCATCGCTT+TGG | - | chr8_4:55669148-55669167 | None:intergenic | 50.0% | |
| ! | AAAGCGATGCTGATGGTGAG+AGG | + | chr8_4:55669147-55669166 | Msa1334880:CDS | 50.0% |
| ! | AAGCGATGCTGATGGTGAGA+GGG | + | chr8_4:55669148-55669167 | Msa1334880:CDS | 50.0% |
| ATGGTGAGAGGGGTAGAGAT+AGG | + | chr8_4:55669159-55669178 | Msa1334880:CDS | 50.0% | |
| AAAGAGAGAAGGGCAGAAGG+AGG | + | chr8_4:55669210-55669229 | Msa1334880:CDS | 50.0% | |
| GAAAGGGAGTGAAACGAGGA+AGG | + | chr8_4:55669307-55669326 | Msa1334880:CDS | 50.0% | |
| AAGGGAGTGAAACGAGGAAG+GGG | + | chr8_4:55669309-55669328 | Msa1334880:CDS | 50.0% | |
| ACGAGGAAGGGGAAGAATGT+TGG | + | chr8_4:55669320-55669339 | Msa1334880:CDS | 50.0% | |
| CGAGGAAGGGGAAGAATGTT+GGG | + | chr8_4:55669321-55669340 | Msa1334880:CDS | 50.0% | |
| GAGGAAGGGGAAGAATGTTG+GGG | + | chr8_4:55669322-55669341 | Msa1334880:CDS | 50.0% | |
| ! | TTGGCTTTCACTCTTTCCGC+AGG | - | chr8_4:55669563-55669582 | None:intergenic | 50.0% |
| ! | TCCATAAGAGCACAGCTCTG+TGG | - | chr8_4:55670055-55670074 | None:intergenic | 50.0% |
| ! | ACAAGTGAGGAAGCATGAGC+TGG | - | chr8_4:55670216-55670235 | None:intergenic | 50.0% |
| TATCTCATGGCCCAAAGGTG+TGG | - | chr8_4:55670274-55670293 | None:intergenic | 50.0% | |
| GCAGGCCAGACTTTATCTCA+TGG | - | chr8_4:55670287-55670306 | None:intergenic | 50.0% | |
| GGGCCTAAGGAGTTTATAGC+AGG | - | chr8_4:55670305-55670324 | None:intergenic | 50.0% | |
| TGTCAGGGACCCTGTTTATG+GGG | - | chr8_4:55670338-55670357 | None:intergenic | 50.0% | |
| CTGTCAGGGACCCTGTTTAT+GGG | - | chr8_4:55670339-55670358 | None:intergenic | 50.0% | |
| ACTGTCAGGGACCCTGTTTA+TGG | - | chr8_4:55670340-55670359 | None:intergenic | 50.0% | |
| TAAACAGGGTCCCTGACAGT+AGG | + | chr8_4:55670340-55670359 | Msa1334880:intron | 50.0% | |
| AAACAGGGTCCCTGACAGTA+GGG | + | chr8_4:55670341-55670360 | Msa1334880:intron | 50.0% | |
| GCTGCACAGGATTCAGATAG+AGG | + | chr8_4:55670869-55670888 | Msa1334880:intron | 50.0% | |
| ACAGGATTCAGATAGAGGCG+TGG | + | chr8_4:55670874-55670893 | Msa1334880:CDS | 50.0% | |
| ! | CAGGATTCAGATAGAGGCGT+GGG | + | chr8_4:55670875-55670894 | Msa1334880:CDS | 50.0% |
| CGATGAGGAAGTTGAAGGTC+TGG | + | chr8_4:55670937-55670956 | Msa1334880:intron | 50.0% | |
| GGGTGGGATACAGTTCAAGA+GGG | + | chr8_4:55671107-55671126 | Msa1334880:intron | 50.0% | |
| TGGGATACAGTTCAAGAGGG+AGG | + | chr8_4:55671110-55671129 | Msa1334880:intron | 50.0% | |
| GATACAGTTCAAGAGGGAGG+AGG | + | chr8_4:55671113-55671132 | Msa1334880:intron | 50.0% | |
| ACGGCAATAGCTGCCAACTT+GGG | - | chr8_4:55671158-55671177 | None:intergenic | 50.0% | |
| AACGGCAATAGCTGCCAACT+TGG | - | chr8_4:55671159-55671178 | None:intergenic | 50.0% | |
| ! | GTTGGCAGCTATTGCCGTTT+AGG | + | chr8_4:55671160-55671179 | Msa1334880:intron | 50.0% |
| AGTGAGGGTAGACTGGGATT+CGG | + | chr8_4:55671215-55671234 | Msa1334880:intron | 50.0% | |
| TTCAGCACCTGCAGATAGGT+GGG | - | chr8_4:55671933-55671952 | None:intergenic | 50.0% | |
| CATCTTCAGCACCTGCAGAT+AGG | - | chr8_4:55671937-55671956 | None:intergenic | 50.0% | |
| ATACCTCGACTGCGGAAAAC+CGG | - | chr8_4:55671994-55672013 | None:intergenic | 50.0% | |
| CACTCAAGAGGCTTGAAACC+AGG | - | chr8_4:55672262-55672281 | None:intergenic | 50.0% | |
| !!! | TTTTGTTTCAGGTGCTGGCC+AGG | + | chr8_4:55672352-55672371 | Msa1334880:intron | 50.0% |
| CAAAAGGGTCTTGGCGTGAT+CGG | + | chr8_4:55672376-55672395 | Msa1334880:CDS | 50.0% | |
| AAAAGGGTCTTGGCGTGATC+GGG | + | chr8_4:55672377-55672396 | Msa1334880:CDS | 50.0% | |
| GGGTTCGTCAGACATAGAGT+TGG | + | chr8_4:55672397-55672416 | Msa1334880:exon | 50.0% | |
| ACATAGAGTTGGCACCTCGA+AGG | + | chr8_4:55672408-55672427 | Msa1334880:exon | 50.0% | |
| !! | TGTCAGAAGCATCACCTTCG+AGG | - | chr8_4:55672425-55672444 | None:intergenic | 50.0% |
| GGCGTCGTTTGATGTGGAAG+TGG | - | chr8_4:55668772-55668791 | None:intergenic | 55.0% | |
| AGGAACGGCGTCGTTTGATG+TGG | - | chr8_4:55668778-55668797 | None:intergenic | 55.0% | |
| AACGACGCCGTTCCTAAACC+CGG | + | chr8_4:55668783-55668802 | Msa1334880:CDS | 55.0% | |
| GAACTGCGAGAGGAAGGAAG+AGG | - | chr8_4:55668826-55668845 | None:intergenic | 55.0% | |
| ! | AGGCTTTGACGAACTGCGAG+AGG | - | chr8_4:55668836-55668855 | None:intergenic | 55.0% |
| GCAGGAGTAGGAGTAGAGAG+AGG | + | chr8_4:55669039-55669058 | Msa1334880:CDS | 55.0% | |
| CGAAGCCAAAGCGATGCTGA+TGG | + | chr8_4:55669140-55669159 | Msa1334880:CDS | 55.0% | |
| ! | AGCGATGCTGATGGTGAGAG+GGG | + | chr8_4:55669149-55669168 | Msa1334880:CDS | 55.0% |
| GGGAAAGAGAGAAGGGCAGA+AGG | + | chr8_4:55669207-55669226 | Msa1334880:CDS | 55.0% | |
| GAGGGAAAGGGAGTGAAACG+AGG | + | chr8_4:55669303-55669322 | Msa1334880:CDS | 55.0% | |
| GCCACAGAGCTGTGCTCTTA+TGG | + | chr8_4:55670051-55670070 | Msa1334880:intron | 55.0% | |
| ! | AGGAAGCATGAGCTGGCAGT+AGG | - | chr8_4:55670209-55670228 | None:intergenic | 55.0% |
| GGGCTACATCCCTACTGTCA+GGG | - | chr8_4:55670353-55670372 | None:intergenic | 55.0% | |
| AGGGCTACATCCCTACTGTC+AGG | - | chr8_4:55670354-55670373 | None:intergenic | 55.0% | |
| GGGATGTAGCCCTGAAGCAT+AGG | + | chr8_4:55670361-55670380 | Msa1334880:intron | 55.0% | |
| ACCCATACTGGGTACGCGTA+CGG | + | chr8_4:55670404-55670423 | Msa1334880:intron | 55.0% | |
| ACCGTACGCGTACCCAGTAT+GGG | - | chr8_4:55670408-55670427 | None:intergenic | 55.0% | |
| TACCGTACGCGTACCCAGTA+TGG | - | chr8_4:55670409-55670428 | None:intergenic | 55.0% | |
| ACTTTCGACTGCAGCTGCAC+AGG | + | chr8_4:55670856-55670875 | Msa1334880:intron | 55.0% | |
| ! | ATTCAGATAGAGGCGTGGGC+TGG | + | chr8_4:55670879-55670898 | Msa1334880:CDS | 55.0% |
| ! | TTCAGATAGAGGCGTGGGCT+GGG | + | chr8_4:55670880-55670899 | Msa1334880:CDS | 55.0% |
| GGGGTGGGATACAGTTCAAG+AGG | + | chr8_4:55671106-55671125 | Msa1334880:intron | 55.0% | |
| ATGCAGGAGTGAGGGTAGAC+TGG | + | chr8_4:55671208-55671227 | Msa1334880:intron | 55.0% | |
| TGCAGGAGTGAGGGTAGACT+GGG | + | chr8_4:55671209-55671228 | Msa1334880:intron | 55.0% | |
| ! | AGGGTAGACTGGGATTCGGT+TGG | + | chr8_4:55671219-55671238 | Msa1334880:intron | 55.0% |
| CTTCAGCACCTGCAGATAGG+TGG | - | chr8_4:55671934-55671953 | None:intergenic | 55.0% | |
| ! | TTTCCGGTTTTCCGCAGTCG+AGG | + | chr8_4:55671988-55672007 | Msa1334880:CDS | 55.0% |
| CTATCTGTACTGCTGGTGGG+AGG | - | chr8_4:55672194-55672213 | None:intergenic | 55.0% | |
| ! | CGATCACGCCAAGACCCTTT+TGG | - | chr8_4:55672378-55672397 | None:intergenic | 55.0% |
| !! | AGTGGTGGTGGAGGAGGAAG+AGG | - | chr8_4:55668856-55668875 | None:intergenic | 60.0% |
| TCTGTCGGAATCGGATGGGG+CGG | - | chr8_4:55668898-55668917 | None:intergenic | 60.0% | |
| ! | GTTTATGGGGCTGGGGCACT+GGG | - | chr8_4:55670325-55670344 | None:intergenic | 60.0% |
| TGTTTATGGGGCTGGGGCAC+TGG | - | chr8_4:55670326-55670345 | None:intergenic | 60.0% | |
| AGTGCCCCAGCCCCATAAAC+AGG | + | chr8_4:55670325-55670344 | Msa1334880:intron | 60.0% | |
| GTGCCCCAGCCCCATAAACA+GGG | + | chr8_4:55670326-55670345 | Msa1334880:intron | 60.0% | |
| GGACCCTGTTTATGGGGCTG+GGG | - | chr8_4:55670332-55670351 | None:intergenic | 60.0% | |
| GGGACCCTGTTTATGGGGCT+GGG | - | chr8_4:55670333-55670352 | None:intergenic | 60.0% | |
| AGGGACCCTGTTTATGGGGC+TGG | - | chr8_4:55670334-55670353 | None:intergenic | 60.0% | |
| GGATGCCCCTCTTGACGATG+AGG | + | chr8_4:55670922-55670941 | Msa1334880:CDS | 60.0% | |
| CGCGCACTTCACACAGGCTT+TGG | - | chr8_4:55671078-55671097 | None:intergenic | 60.0% | |
| AAGCCTGTGTGAAGTGCGCG+CGG | + | chr8_4:55671078-55671097 | Msa1334880:intron | 60.0% | |
| GTGCATGCCCACCTATCTGC+AGG | + | chr8_4:55671923-55671942 | Msa1334880:intron | 60.0% | |
| TCTGTACTGCTGGTGGGAGG+TGG | - | chr8_4:55672191-55672210 | None:intergenic | 60.0% | |
| !! | AGGTGCTGGCCAGGCCAAAA+GGG | + | chr8_4:55672361-55672380 | Msa1334880:intron | 60.0% |
| TGGCCAGGCCAAAAGGGTCT+TGG | + | chr8_4:55672367-55672386 | Msa1334880:CDS | 60.0% | |
| ! | ACGCCAAGACCCTTTTGGCC+TGG | - | chr8_4:55672373-55672392 | None:intergenic | 60.0% |
| CTGTCGGAATCGGATGGGGC+GGG | - | chr8_4:55668897-55668916 | None:intergenic | 65.0% | |
| AGCCTGTGTGAAGTGCGCGC+GGG | + | chr8_4:55671079-55671098 | Msa1334880:intron | 65.0% | |
| GTACTGCTGGTGGGAGGTGG+AGG | - | chr8_4:55672188-55672207 | None:intergenic | 65.0% | |
| !! | CAGGTGCTGGCCAGGCCAAA+AGG | + | chr8_4:55672360-55672379 | Msa1334880:intron | 65.0% |
| !! | GGAGGCAGTGGTGGTGGAGG+AGG | - | chr8_4:55668862-55668881 | None:intergenic | 70.0% |
| !! | GGTGGAGGCAGTGGTGGTGG+AGG | - | chr8_4:55668865-55668884 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGCAGTGGTGG+TGG | - | chr8_4:55668868-55668887 | None:intergenic | 70.0% |
| GGAATCGGATGGGGCGGGTG+GGG | - | chr8_4:55668892-55668911 | None:intergenic | 70.0% | |
| CGGAATCGGATGGGGCGGGT+GGG | - | chr8_4:55668893-55668912 | None:intergenic | 70.0% | |
| TCGGAATCGGATGGGGCGGG+TGG | - | chr8_4:55668894-55668913 | None:intergenic | 70.0% | |
| GCCTGTGTGAAGTGCGCGCG+GGG | + | chr8_4:55671080-55671099 | Msa1334880:intron | 70.0% | |
| ACCCCGCGCGCACTTCACAC+AGG | - | chr8_4:55671084-55671103 | None:intergenic | 70.0% | |
| TGTGTGAAGTGCGCGCGGGG+TGG | + | chr8_4:55671083-55671102 | Msa1334880:intron | 70.0% | |
| GTGTGAAGTGCGCGCGGGGT+GGG | + | chr8_4:55671084-55671103 | Msa1334880:intron | 70.0% | |
| TGTGAAGTGCGCGCGGGGTG+GGG | + | chr8_4:55671085-55671104 | Msa1334880:intron | 70.0% | |
| CTGGTGGGAGGTGGAGGAGC+CGG | - | chr8_4:55672182-55672201 | None:intergenic | 70.0% | |
| !! | GGCGGTGGTGGAGGCAGTGG+TGG | - | chr8_4:55668871-55668890 | None:intergenic | 75.0% |
| !! | TGGGGCGGTGGTGGAGGCAG+TGG | - | chr8_4:55668874-55668893 | None:intergenic | 75.0% |
| ATCGGATGGGGCGGGTGGGG+CGG | - | chr8_4:55668889-55668908 | None:intergenic | 75.0% | |
| !! | GGGCTGGGGCACTGGGCCTA+AGG | - | chr8_4:55670318-55670337 | None:intergenic | 75.0% |
| GTGAAGTGCGCGCGGGGTGG+GGG | + | chr8_4:55671086-55671105 | Msa1334880:intron | 75.0% | |
| TGAAGTGCGCGCGGGGTGGG+GGG | + | chr8_4:55671087-55671106 | Msa1334880:intron | 75.0% | |
| !! | GGCGGGTGGGGCGGTGGTGG+AGG | - | chr8_4:55668880-55668899 | None:intergenic | 85.0% |
| ! | TGGGGCGGGTGGGGCGGTGG+TGG | - | chr8_4:55668883-55668902 | None:intergenic | 85.0% |
| ! | GGATGGGGCGGGTGGGGCGG+TGG | - | chr8_4:55668886-55668905 | None:intergenic | 85.0% |
| ! | AGTGCGCGCGGGGTGGGGGG+TGG | + | chr8_4:55671090-55671109 | Msa1334880:intron | 85.0% |
| ! | GTGCGCGCGGGGTGGGGGGT+GGG | + | chr8_4:55671091-55671110 | Msa1334880:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 55668639 | 55672674 | 55668639 | ID=Msa1334880;Name=Msa1334880 |
| chr8_4 | mRNA | 55668639 | 55672674 | 55668639 | ID=Msa1334880-mRNA-1;Parent=Msa1334880;Name=Msa1334880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=42|1|1|1|1|1|6|261|371 |
| chr8_4 | exon | 55668639 | 55669382 | 55668639 | ID=Msa1334880-mRNA-1:exon:17329;Parent=Msa1334880-mRNA-1 |
| chr8_4 | exon | 55669557 | 55669608 | 55669557 | ID=Msa1334880-mRNA-1:exon:17330;Parent=Msa1334880-mRNA-1 |
| chr8_4 | exon | 55670870 | 55670953 | 55670870 | ID=Msa1334880-mRNA-1:exon:17331;Parent=Msa1334880-mRNA-1 |
| chr8_4 | exon | 55671945 | 55672009 | 55671945 | ID=Msa1334880-mRNA-1:exon:17332;Parent=Msa1334880-mRNA-1 |
| chr8_4 | exon | 55672125 | 55672286 | 55672125 | ID=Msa1334880-mRNA-1:exon:17333;Parent=Msa1334880-mRNA-1 |
| chr8_4 | exon | 55672363 | 55672674 | 55672363 | ID=Msa1334880-mRNA-1:exon:17334;Parent=Msa1334880-mRNA-1 |
| chr8_4 | five_prime_UTR | 55668639 | 55668680 | 55668639 | ID=Msa1334880-mRNA-1:five_prime_utr;Parent=Msa1334880-mRNA-1 |
| chr8_4 | CDS | 55668681 | 55669382 | 55668681 | ID=Msa1334880-mRNA-1:cds;Parent=Msa1334880-mRNA-1 |
| chr8_4 | CDS | 55669557 | 55669608 | 55669557 | ID=Msa1334880-mRNA-1:cds;Parent=Msa1334880-mRNA-1 |
| chr8_4 | CDS | 55670870 | 55670953 | 55670870 | ID=Msa1334880-mRNA-1:cds;Parent=Msa1334880-mRNA-1 |
| chr8_4 | CDS | 55671945 | 55672009 | 55671945 | ID=Msa1334880-mRNA-1:cds;Parent=Msa1334880-mRNA-1 |
| chr8_4 | CDS | 55672125 | 55672286 | 55672125 | ID=Msa1334880-mRNA-1:cds;Parent=Msa1334880-mRNA-1 |
| chr8_4 | CDS | 55672363 | 55672413 | 55672363 | ID=Msa1334880-mRNA-1:cds;Parent=Msa1334880-mRNA-1 |
| chr8_4 | three_prime_UTR | 55672414 | 55672674 | 55672414 | ID=Msa1334880-mRNA-1:three_prime_utr;Parent=Msa1334880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
