AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0987370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0987370 MtrunA17_Chr6g0466891 93.750 224 10 1 1 224 1 220 1.06e-135 379
Msa0987370 MtrunA17_Chr1g0201251 74.208 221 51 3 6 224 5 221 3.17e-111 318
Msa0987370 MtrunA17_Chr3g0090241 80.769 130 24 1 6 134 5 134 4.20e-76 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0987370 AT2G30060.1 67.488 203 63 3 6 206 11 212 3.29e-91 267
Msa0987370 AT5G58590.1 72.093 172 47 1 8 178 10 181 1.84e-89 263
Msa0987370 AT1G07140.1 72.093 172 47 1 6 176 9 180 1.45e-87 258

Find 77 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCTTTCCTCTTTATTC+AGG 0.146603 6_4:-37629944 None:intergenic
GAGAGAGGGAAGGGGTTAAT+AGG 0.188236 6_4:-37627516 None:intergenic
TTAGAGAGAGAAAGTGATAA+AGG 0.250963 6_4:-37627548 None:intergenic
AGAGAGGGAAGGGGTTAATA+GGG 0.267567 6_4:-37627515 None:intergenic
ATCATTGAGATTGGCGCTTT+TGG 0.269745 6_4:+37630336 Msa0987370:three_prime_UTR
CTTCAAAGCTCAAATTCTTA+AGG 0.299314 6_4:-37629989 None:intergenic
CTCTCATAGTCCTAGTCTTC+AGG 0.314034 6_4:+37630230 Msa0987370:three_prime_UTR
ATTCATAGGTTGAAATTTGC+TGG 0.317977 6_4:+37630679 Msa0987370:intron
GTTAGATTGCAGAAAGTTCA+TGG 0.327146 6_4:+37629896 Msa0987370:intron
CTTAAGAATTTGAGCTTTGA+AGG 0.357161 6_4:+37629990 Msa0987370:CDS
GTTGGTTTGGTGTAGGGATG+GGG 0.368624 6_4:+37630419 Msa0987370:three_prime_UTR
CTTGCTTTCCTCTTTATTCA+GGG 0.373773 6_4:-37629943 None:intergenic
TGTTGGTTTGGTGTAGGGAT+GGG 0.374621 6_4:+37630418 Msa0987370:three_prime_UTR
TAGAGAGAGAAAGTGATAAA+GGG 0.378430 6_4:-37627547 None:intergenic
CGGGTTTGAATCATTGAGAT+TGG 0.383808 6_4:+37630327 Msa0987370:three_prime_UTR
GATTCCCTTCCTTGTCAAAT+CGG 0.395157 6_4:-37628222 None:intergenic
ATAAGGTTACTGGAAAAGTT+AGG 0.398775 6_4:+37628287 Msa0987370:CDS
CAAGGCAATATGGCAAAGTT+TGG 0.402268 6_4:+37630175 Msa0987370:three_prime_UTR
TATGATGTGACTGAACAAAA+TGG 0.406490 6_4:+37630710 Msa0987370:three_prime_UTR
GGTTTGGTGTAGGGATGGGG+AGG 0.424673 6_4:+37630422 Msa0987370:three_prime_UTR
GGAATGAGAAATCTTGTGTT+TGG 0.452376 6_4:+37628778 Msa0987370:CDS
TAAAGGGTTTCTAGAGAGAG+AGG 0.455989 6_4:-37627531 None:intergenic
GGCAATATGGCAAAGTTTGG+TGG 0.471716 6_4:+37630178 Msa0987370:three_prime_UTR
TCAATACTCACTGAGATGAT+TGG 0.476949 6_4:-37628347 None:intergenic
ATGTTGGTTTGGTGTAGGGA+TGG 0.478068 6_4:+37630417 Msa0987370:three_prime_UTR
TGAATTATTGTCAGCAAGGT+TGG 0.480315 6_4:+37630295 Msa0987370:three_prime_UTR
TGCTGAATCCCTGAATAAAG+AGG 0.481374 6_4:+37629935 Msa0987370:CDS
CACGAAGTCGCTGTTTCCAC+TGG 0.483068 6_4:+37627668 Msa0987370:CDS
GTTTCTAGAGAGAGAGGGAA+GGG 0.484698 6_4:-37627525 None:intergenic
TTGACAAGGAAGGGAATCAA+TGG 0.490090 6_4:+37628227 Msa0987370:CDS
TTGAACGAGTCATGTTGGTT+TGG 0.491688 6_4:+37630406 Msa0987370:three_prime_UTR
ATCTTCCTCTTCGTGATGAT+CGG 0.492706 6_4:-37627588 None:intergenic
CAATGGAAGGAACGAGGGGC+AGG 0.498194 6_4:+37628244 Msa0987370:CDS
TTTCTAGAGAGAGAGGGAAG+GGG 0.498764 6_4:-37627524 None:intergenic
GCCGGTGTCTTCTTCATCGC+CGG 0.504644 6_4:-37627618 None:intergenic
AGGGATGGGGAGGGTGCAGT+CGG 0.505751 6_4:+37630432 Msa0987370:three_prime_UTR
GAGTCATGTTGGTTTGGTGT+AGG 0.509708 6_4:+37630412 Msa0987370:three_prime_UTR
GAAAACCGAGGAGAAAACTA+AGG 0.512105 6_4:+37630055 Msa0987370:CDS
TTAAGAATTTGAGCTTTGAA+GGG 0.515240 6_4:+37629991 Msa0987370:CDS
AAACAGCGACTTCGTGAAGT+TGG 0.518653 6_4:-37627661 None:intergenic
AAAGGGTTTCTAGAGAGAGA+GGG 0.520066 6_4:-37627530 None:intergenic
ATGACTGTGCAAGAGCATGC+TGG 0.525554 6_4:+37628756 Msa0987370:CDS
GTGTCTTCTTCATCGCCGGC+GGG 0.532371 6_4:-37627614 None:intergenic
AGTCATGTTGGTTTGGTGTA+GGG 0.534793 6_4:+37630413 Msa0987370:three_prime_UTR
GAAAAGAAAGTCGAAGAGCC+TGG 0.535131 6_4:+37630116 Msa0987370:CDS
GGGATGGGGAGGGTGCAGTC+GGG 0.540876 6_4:+37630433 Msa0987370:three_prime_UTR
TTCTTCATCTTCTTCACCAG+TGG 0.541787 6_4:-37627684 None:intergenic
GTTTGGTGTAGGGATGGGGA+GGG 0.550590 6_4:+37630423 Msa0987370:three_prime_UTR
ATCTTGTGTTTGGCACGCGA+AGG 0.558670 6_4:+37628788 Msa0987370:CDS
CTGTACCGATTTGACAAGGA+AGG 0.562348 6_4:+37628217 Msa0987370:CDS
GGTGTCTTCTTCATCGCCGG+CGG 0.563701 6_4:-37627615 None:intergenic
TGACTGTGCAAGAGCATGCT+GGG 0.564943 6_4:+37628757 Msa0987370:CDS
CATAATCAAGCAGATGAACC+AGG 0.570119 6_4:-37630134 None:intergenic
TCGTTGAATTATTGTCAGCA+AGG 0.575447 6_4:+37630291 Msa0987370:three_prime_UTR
GGAATCAATGGAAGGAACGA+GGG 0.577810 6_4:+37628239 Msa0987370:CDS
GATCGGAGCGATTTGAGCGC+CGG 0.581625 6_4:-37627636 None:intergenic
CCTGAATAAAGAGGAAAGCA+AGG 0.588948 6_4:+37629944 Msa0987370:CDS
CTTAAGGAGATCAGCAGCAG+TGG 0.591678 6_4:-37629973 None:intergenic
ACTTCGTGAAGTTGGATGAT+CGG 0.594925 6_4:-37627653 None:intergenic
GGTTTCTAGAGAGAGAGGGA+AGG 0.601196 6_4:-37627526 None:intergenic
GGGAATCAATGGAAGGAACG+AGG 0.609048 6_4:+37628238 Msa0987370:CDS
CACGCGAAGGACTTTGCTGA+TGG 0.615394 6_4:+37628801 Msa0987370:CDS
GAAAGACGAAGAGAAATCTG+AGG 0.628935 6_4:+37630031 Msa0987370:CDS
ACTTTCAAGTTATGAATCTG+AGG 0.629051 6_4:-37630611 None:intergenic
CAAGGAAGGGAATCAATGGA+AGG 0.636394 6_4:+37628231 Msa0987370:CDS
GAATCAATGGAAGGAACGAG+GGG 0.647994 6_4:+37628240 Msa0987370:CDS
TTTGTTGCTACGTTATTGAG+TGG 0.649884 6_4:+37630258 Msa0987370:three_prime_UTR
TGTACCGATTTGACAAGGAA+GGG 0.657438 6_4:+37628218 Msa0987370:CDS
TGCTGACAATAATTCAACGA+AGG 0.658831 6_4:-37630288 None:intergenic
TGAGAGAGTATTGATAAGAG+TGG 0.665618 6_4:-37630213 None:intergenic
GAAGAGGAAGATGTTCCCGC+CGG 0.668991 6_4:+37627599 Msa0987370:CDS
AAGCACCGATCATCACGAAG+AGG 0.672214 6_4:+37627583 Msa0987370:CDS
GTAGAAGTAAGTACAAACAA+AGG 0.677270 6_4:+37630461 Msa0987370:three_prime_UTR
TATTGATAAGAGTGGCACGA+AGG 0.684541 6_4:-37630205 None:intergenic
GAAACTGTACCGATTTGACA+AGG 0.698764 6_4:+37628213 Msa0987370:CDS
GAAATCTGAGGAGAAAACCG+AGG 0.701527 6_4:+37630043 Msa0987370:CDS
GCCGGCGATGAAGAAGACAC+CGG 0.712296 6_4:+37627617 Msa0987370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTATTTGATTTTTAAT+TGG + chr6_4:37628678-37628697 Msa0987370:intron 10.0%
!! AAAAATTACAACAAAAAAAG+TGG - chr6_4:37627749-37627768 None:intergenic 15.0%
!! CATAAAAAAATCACAAAAAA+CGG - chr6_4:37627979-37627998 None:intergenic 15.0%
!! TGAATAAAAGAAAAAGAAAA+AGG - chr6_4:37628891-37628910 None:intergenic 15.0%
!! ATAGGTTATACATAAATATT+TGG + chr6_4:37629080-37629099 Msa0987370:intron 15.0%
!! TTATTTGAATAAACAACTTA+TGG - chr6_4:37629174-37629193 None:intergenic 15.0%
!! ATAAGTTGTTTATTCAAATA+AGG + chr6_4:37629173-37629192 Msa0987370:intron 15.0%
!! AATGAATTAAATCATTATAC+GGG - chr6_4:37629757-37629776 None:intergenic 15.0%
!! CAATGAATTAAATCATTATA+CGG - chr6_4:37629758-37629777 None:intergenic 15.0%
!!! ATCTTTAATTAGAAGTGTTA+TGG + chr6_4:37628648-37628667 Msa0987370:intron 20.0%
!!! GATTTTTAATTGGTTTTTGA+TGG + chr6_4:37628688-37628707 Msa0987370:intron 20.0%
!! CTGATTAATCTAAGTTAAAT+TGG + chr6_4:37629239-37629258 Msa0987370:intron 20.0%
!!! ATTTTACAATCAAACTTAAG+AGG - chr6_4:37629308-37629327 None:intergenic 20.0%
!! TTGATTGTAAAATAACTTGA+TGG + chr6_4:37629315-37629334 Msa0987370:intron 20.0%
!!! ATTTTATAGACTTAAATCAC+TGG + chr6_4:37630511-37630530 Msa0987370:three_prime_UTR 20.0%
!!! TGTGATTTTGTTGTGAATAT+TGG + chr6_4:37627841-37627860 Msa0987370:intron 25.0%
!!! GTGATTTTTGTTGTGAATTT+TGG + chr6_4:37627872-37627891 Msa0987370:intron 25.0%
!!! TGAATTTTGGTAAAGCTTAT+GGG + chr6_4:37627885-37627904 Msa0987370:intron 25.0%
!!! TTGCAATGTTTTTGTGATTT+TGG + chr6_4:37628074-37628093 Msa0987370:intron 25.0%
! CAAGATCAATAAACAATCAA+AGG - chr6_4:37628477-37628496 None:intergenic 25.0%
! CTTCTAATTAAAGATGTCTT+TGG - chr6_4:37628643-37628662 None:intergenic 25.0%
!!! TGTGTTTGATTGTTTTGTTT+TGG + chr6_4:37628718-37628737 Msa0987370:intron 25.0%
!!! ACATATTCACTAGTTGTTTT+CGG + chr6_4:37629013-37629032 Msa0987370:intron 25.0%
!!! TTTATTTTTATAAGCACTCC+AGG + chr6_4:37629036-37629055 Msa0987370:intron 25.0%
!!! GATTTTTATTTGACATTCCT+TGG + chr6_4:37629209-37629228 Msa0987370:intron 25.0%
!! ATAATTTGTACATGATCGTA+TGG - chr6_4:37629417-37629436 None:intergenic 25.0%
!! CTAATTTTGTAAGGTAGATT+AGG - chr6_4:37629567-37629586 None:intergenic 25.0%
! ATATGCCATAAATTTACACT+CGG - chr6_4:37629853-37629872 None:intergenic 25.0%
!!! TTAAGAATTTGAGCTTTGAA+GGG + chr6_4:37629991-37630010 Msa0987370:CDS 25.0%
!! ATATGTTCATATTTTCGACA+AGG + chr6_4:37630157-37630176 Msa0987370:three_prime_UTR 25.0%
TAGAGAGAGAAAGTGATAAA+GGG - chr6_4:37627550-37627569 None:intergenic 30.0%
TTAGAGAGAGAAAGTGATAA+AGG - chr6_4:37627551-37627570 None:intergenic 30.0%
!! GATGTTTTTGTCGTGAATTT+TGG + chr6_4:37627809-37627828 Msa0987370:intron 30.0%
!! GTGAATTTTGGTAAAGCTTA+TGG + chr6_4:37627884-37627903 Msa0987370:intron 30.0%
!! TGGGATTTTGTTCTGAATTT+TGG + chr6_4:37627904-37627923 Msa0987370:intron 30.0%
!!! TGTGAAGTTTTTGAAGCATA+AGG + chr6_4:37628270-37628289 Msa0987370:CDS 30.0%
!!! TTTTTGAAGCATAAGGTTAC+TGG + chr6_4:37628277-37628296 Msa0987370:CDS 30.0%
ATAAGGTTACTGGAAAAGTT+AGG + chr6_4:37628287-37628306 Msa0987370:CDS 30.0%
! TCATTTTCTCAAATTACCAC+TGG - chr6_4:37628551-37628570 None:intergenic 30.0%
TTGTAAACTATGTTCAGACT+TGG + chr6_4:37628922-37628941 Msa0987370:intron 30.0%
GTTCGTGAAAACAACTTAAT+AGG + chr6_4:37629062-37629081 Msa0987370:intron 30.0%
GTGCTGTATTAGTATTTGTT+AGG + chr6_4:37629280-37629299 Msa0987370:intron 30.0%
ATACCATAGGATCAAGTAAA+AGG - chr6_4:37629358-37629377 None:intergenic 30.0%
! TTTTACTTGATCCTATGGTA+TGG + chr6_4:37629357-37629376 Msa0987370:intron 30.0%
AAGTTTGAATTCCATACCAT+AGG - chr6_4:37629371-37629390 None:intergenic 30.0%
ACCTTACAAAATTAGTGTAC+AGG + chr6_4:37629572-37629591 Msa0987370:intron 30.0%
! ACCTGTACACTAATTTTGTA+AGG - chr6_4:37629576-37629595 None:intergenic 30.0%
!! GGAAAAGCATTGTAAAGAAA+AGG - chr6_4:37629633-37629652 None:intergenic 30.0%
! TTAACCAGTATTTTGTGGAT+TGG + chr6_4:37629672-37629691 Msa0987370:intron 30.0%
AGAACAATATAAGCCTGAAA+AGG - chr6_4:37629814-37629833 None:intergenic 30.0%
ATTTACACTCGGCAATTAAT+AGG - chr6_4:37629842-37629861 None:intergenic 30.0%
AATTGCCGAGTGTAAATTTA+TGG + chr6_4:37629845-37629864 Msa0987370:intron 30.0%
CTTCAAAGCTCAAATTCTTA+AGG - chr6_4:37629992-37630011 None:intergenic 30.0%
! CTTAAGAATTTGAGCTTTGA+AGG + chr6_4:37629990-37630009 Msa0987370:CDS 30.0%
! ATATTTTCGACAAGGCAATA+TGG + chr6_4:37630165-37630184 Msa0987370:three_prime_UTR 30.0%
GTAGAAGTAAGTACAAACAA+AGG + chr6_4:37630461-37630480 Msa0987370:three_prime_UTR 30.0%
!! ACTTTCAAGTTATGAATCTG+AGG - chr6_4:37630614-37630633 None:intergenic 30.0%
ATTCATAACTTGAAAGTTGC+TGG + chr6_4:37630617-37630636 Msa0987370:intron 30.0%
AATTTCAACCTATGAATCTG+AGG - chr6_4:37630676-37630695 None:intergenic 30.0%
! ATTCATAGGTTGAAATTTGC+TGG + chr6_4:37630679-37630698 Msa0987370:intron 30.0%
TATGATGTGACTGAACAAAA+TGG + chr6_4:37630710-37630729 Msa0987370:three_prime_UTR 30.0%
TCAATACTCACTGAGATGAT+TGG - chr6_4:37628350-37628369 None:intergenic 35.0%
TCTATGAATCACTGACACAT+CGG + chr6_4:37628377-37628396 Msa0987370:intron 35.0%
ATTGATGTAAACACGTGTGT+CGG + chr6_4:37628429-37628448 Msa0987370:intron 35.0%
GGAATGAGAAATCTTGTGTT+TGG + chr6_4:37628778-37628797 Msa0987370:CDS 35.0%
TTGGCTTAACTCACTGAATT+TGG + chr6_4:37629258-37629277 Msa0987370:intron 35.0%
! CTTCCTTTTACTTGATCCTA+TGG + chr6_4:37629352-37629371 Msa0987370:intron 35.0%
TAAGTTTGTGACATTACCGA+AGG + chr6_4:37629485-37629504 Msa0987370:intron 35.0%
GTAAGGTAGATTAGGATCAT+TGG - chr6_4:37629559-37629578 None:intergenic 35.0%
! ATGCTTTTCCCTGCTTATAA+TGG + chr6_4:37629643-37629662 Msa0987370:intron 35.0%
! TGCTTTTCCCTGCTTATAAT+GGG + chr6_4:37629644-37629663 Msa0987370:intron 35.0%
!!! CAGTATTTTGTGGATTGGAT+GGG + chr6_4:37629677-37629696 Msa0987370:intron 35.0%
! TTTTACCTAACATGATCCTG+TGG + chr6_4:37629711-37629730 Msa0987370:intron 35.0%
GTGAAATGTTTGCAATCCAA+TGG - chr6_4:37629792-37629811 None:intergenic 35.0%
! TGCAAACATTTCACCTTTTC+AGG + chr6_4:37629798-37629817 Msa0987370:intron 35.0%
GTTAGATTGCAGAAAGTTCA+TGG + chr6_4:37629896-37629915 Msa0987370:intron 35.0%
CTTGCTTTCCTCTTTATTCA+GGG - chr6_4:37629946-37629965 None:intergenic 35.0%
!! TTTCTCCTTAGTTTTCTCCT+CGG - chr6_4:37630063-37630082 None:intergenic 35.0%
ACACCAGAAAAAGAAAGCAA+GGG + chr6_4:37630086-37630105 Msa0987370:CDS 35.0%
!! TGAGAGAGTATTGATAAGAG+TGG - chr6_4:37630216-37630235 None:intergenic 35.0%
ACAAAAACAACCTGAAGACT+AGG - chr6_4:37630243-37630262 None:intergenic 35.0%
TTTGTTGCTACGTTATTGAG+TGG + chr6_4:37630258-37630277 Msa0987370:three_prime_UTR 35.0%
TGCTGACAATAATTCAACGA+AGG - chr6_4:37630291-37630310 None:intergenic 35.0%
TCGTTGAATTATTGTCAGCA+AGG + chr6_4:37630291-37630310 Msa0987370:three_prime_UTR 35.0%
TGAATTATTGTCAGCAAGGT+TGG + chr6_4:37630295-37630314 Msa0987370:three_prime_UTR 35.0%
! GAATTTTGAACGAGTCATGT+TGG + chr6_4:37630401-37630420 Msa0987370:three_prime_UTR 35.0%
! AAAGGGTTTCTAGAGAGAGA+GGG - chr6_4:37627533-37627552 None:intergenic 40.0%
! TAAAGGGTTTCTAGAGAGAG+AGG - chr6_4:37627534-37627553 None:intergenic 40.0%
ATCTTCCTCTTCGTGATGAT+CGG - chr6_4:37627591-37627610 None:intergenic 40.0%
ACTTCGTGAAGTTGGATGAT+CGG - chr6_4:37627656-37627675 None:intergenic 40.0%
TTCTTCATCTTCTTCACCAG+TGG - chr6_4:37627687-37627706 None:intergenic 40.0%
!! GAAACTGTACCGATTTGACA+AGG + chr6_4:37628213-37628232 Msa0987370:CDS 40.0%
!! TGTACCGATTTGACAAGGAA+GGG + chr6_4:37628218-37628237 Msa0987370:CDS 40.0%
GATTCCCTTCCTTGTCAAAT+CGG - chr6_4:37628225-37628244 None:intergenic 40.0%
TTGACAAGGAAGGGAATCAA+TGG + chr6_4:37628227-37628246 Msa0987370:CDS 40.0%
!! TGTGTCGGTGTTGTAGATAT+CGG + chr6_4:37628444-37628463 Msa0987370:intron 40.0%
!! TGCTCTTGCACAGTCATTTT+AGG - chr6_4:37628753-37628772 None:intergenic 40.0%
!! GTTCAGACTTGGTGCTTATT+TGG + chr6_4:37628933-37628952 Msa0987370:intron 40.0%
!! GTTGTTTTCACGAACTATCC+TGG - chr6_4:37629057-37629076 None:intergenic 40.0%
GATTAATCAGTGCAACACCA+AGG - chr6_4:37629229-37629248 None:intergenic 40.0%
ACATCCAAACGTGAAGATGT+GGG + chr6_4:37629442-37629461 Msa0987370:intron 40.0%
AAGGTGCACATAATTCGACA+AGG - chr6_4:37629614-37629633 None:intergenic 40.0%
! CAGGGTTAACCAGTATTTTG+TGG + chr6_4:37629667-37629686 Msa0987370:intron 40.0%
CCATCCAATCCACAAAATAC+TGG - chr6_4:37629679-37629698 None:intergenic 40.0%
!!! CCAGTATTTTGTGGATTGGA+TGG + chr6_4:37629676-37629695 Msa0987370:intron 40.0%
TGCTGAATCCCTGAATAAAG+AGG + chr6_4:37629935-37629954 Msa0987370:CDS 40.0%
CCTTGCTTTCCTCTTTATTC+AGG - chr6_4:37629947-37629966 None:intergenic 40.0%
CCTGAATAAAGAGGAAAGCA+AGG + chr6_4:37629944-37629963 Msa0987370:CDS 40.0%
GAAAGACGAAGAGAAATCTG+AGG + chr6_4:37630031-37630050 Msa0987370:CDS 40.0%
GAAAACCGAGGAGAAAACTA+AGG + chr6_4:37630055-37630074 Msa0987370:CDS 40.0%
GACACCAGAAAAAGAAAGCA+AGG + chr6_4:37630085-37630104 Msa0987370:CDS 40.0%
! TCTCCCTTGCTTTCTTTTTC+TGG - chr6_4:37630092-37630111 None:intergenic 40.0%
CATAATCAAGCAGATGAACC+AGG - chr6_4:37630137-37630156 None:intergenic 40.0%
CAAGGCAATATGGCAAAGTT+TGG + chr6_4:37630175-37630194 Msa0987370:three_prime_UTR 40.0%
TATTGATAAGAGTGGCACGA+AGG - chr6_4:37630208-37630227 None:intergenic 40.0%
!!! AGCAAGGTTGGTTTTTGAGT+CGG + chr6_4:37630307-37630326 Msa0987370:three_prime_UTR 40.0%
CGGGTTTGAATCATTGAGAT+TGG + chr6_4:37630327-37630346 Msa0987370:three_prime_UTR 40.0%
! ATCATTGAGATTGGCGCTTT+TGG + chr6_4:37630336-37630355 Msa0987370:three_prime_UTR 40.0%
! TTGAACGAGTCATGTTGGTT+TGG + chr6_4:37630406-37630425 Msa0987370:three_prime_UTR 40.0%
!! AGTCATGTTGGTTTGGTGTA+GGG + chr6_4:37630413-37630432 Msa0987370:three_prime_UTR 40.0%
! TTTCTAGAGAGAGAGGGAAG+GGG - chr6_4:37627527-37627546 None:intergenic 45.0%
! GTTTCTAGAGAGAGAGGGAA+GGG - chr6_4:37627528-37627547 None:intergenic 45.0%
AAACAGCGACTTCGTGAAGT+TGG - chr6_4:37627664-37627683 None:intergenic 45.0%
! GAGAGAGAGAGAGAGTATAC+AGG - chr6_4:37627721-37627740 None:intergenic 45.0%
!! CTGTACCGATTTGACAAGGA+AGG + chr6_4:37628217-37628236 Msa0987370:CDS 45.0%
CAAGGAAGGGAATCAATGGA+AGG + chr6_4:37628231-37628250 Msa0987370:CDS 45.0%
GGAATCAATGGAAGGAACGA+GGG + chr6_4:37628239-37628258 Msa0987370:CDS 45.0%
GAATCAATGGAAGGAACGAG+GGG + chr6_4:37628240-37628259 Msa0987370:CDS 45.0%
ACGAACACCTGACACAACAA+TGG + chr6_4:37628509-37628528 Msa0987370:intron 45.0%
CACTGACATGTTAACACCAG+TGG + chr6_4:37628532-37628551 Msa0987370:intron 45.0%
GTCAGATGCTAACATGTGTC+AGG + chr6_4:37628602-37628621 Msa0987370:intron 45.0%
GACATCCAAACGTGAAGATG+TGG + chr6_4:37629441-37629460 Msa0987370:intron 45.0%
!! TTTCCCTGCTTATAATGGGC+AGG + chr6_4:37629648-37629667 Msa0987370:intron 45.0%
!! TTCCCTGCTTATAATGGGCA+GGG + chr6_4:37629649-37629668 Msa0987370:intron 45.0%
AACCCTGCCCATTATAAGCA+GGG - chr6_4:37629654-37629673 None:intergenic 45.0%
TAACCCTGCCCATTATAAGC+AGG - chr6_4:37629655-37629674 None:intergenic 45.0%
AAGTGCCACAGGATCATGTT+AGG - chr6_4:37629719-37629738 None:intergenic 45.0%
!! TGTTACGTTAGAAGTGCCAC+AGG - chr6_4:37629730-37629749 None:intergenic 45.0%
CATTGCTGCTGTCTTTCCAT+TGG + chr6_4:37629773-37629792 Msa0987370:intron 45.0%
GAAATCTGAGGAGAAAACCG+AGG + chr6_4:37630043-37630062 Msa0987370:CDS 45.0%
GAAAAGAAAGTCGAAGAGCC+TGG + chr6_4:37630116-37630135 Msa0987370:CDS 45.0%
GGCAATATGGCAAAGTTTGG+TGG + chr6_4:37630178-37630197 Msa0987370:three_prime_UTR 45.0%
! CTCTCATAGTCCTAGTCTTC+AGG + chr6_4:37630230-37630249 Msa0987370:three_prime_UTR 45.0%
!!! GCAAGGTTGGTTTTTGAGTC+GGG + chr6_4:37630308-37630327 Msa0987370:three_prime_UTR 45.0%
! AGATTGGCGCTTTTGGTCTA+TGG + chr6_4:37630343-37630362 Msa0987370:three_prime_UTR 45.0%
! GATTGGCGCTTTTGGTCTAT+GGG + chr6_4:37630344-37630363 Msa0987370:three_prime_UTR 45.0%
!! GAGTCATGTTGGTTTGGTGT+AGG + chr6_4:37630412-37630431 Msa0987370:three_prime_UTR 45.0%
!! ATGTTGGTTTGGTGTAGGGA+TGG + chr6_4:37630417-37630436 Msa0987370:three_prime_UTR 45.0%
!! TGTTGGTTTGGTGTAGGGAT+GGG + chr6_4:37630418-37630437 Msa0987370:three_prime_UTR 45.0%
TGTTGACGCCTCAGATTCAT+AGG + chr6_4:37630665-37630684 Msa0987370:intron 45.0%
! GGTTTCTAGAGAGAGAGGGA+AGG - chr6_4:37627529-37627548 None:intergenic 50.0%
!! AAGCACCGATCATCACGAAG+AGG + chr6_4:37627583-37627602 Msa0987370:CDS 50.0%
GGGAATCAATGGAAGGAACG+AGG + chr6_4:37628238-37628257 Msa0987370:CDS 50.0%
! GTCAGTGCCATTGTTGTGTC+AGG - chr6_4:37628519-37628538 None:intergenic 50.0%
! ATGACTGTGCAAGAGCATGC+TGG + chr6_4:37628756-37628775 Msa0987370:CDS 50.0%
! TGACTGTGCAAGAGCATGCT+GGG + chr6_4:37628757-37628776 Msa0987370:CDS 50.0%
ATCTTGTGTTTGGCACGCGA+AGG + chr6_4:37628788-37628807 Msa0987370:CDS 50.0%
CTCACCCACATCTTCACGTT+TGG - chr6_4:37629449-37629468 None:intergenic 50.0%
CTTAGATGCCACCTGTGTGT+GGG + chr6_4:37629523-37629542 Msa0987370:intron 50.0%
CTTAAGGAGATCAGCAGCAG+TGG - chr6_4:37629976-37629995 None:intergenic 50.0%
!! GTTGGTTTGGTGTAGGGATG+GGG + chr6_4:37630419-37630438 Msa0987370:three_prime_UTR 50.0%
GAAGAGGAAGATGTTCCCGC+CGG + chr6_4:37627599-37627618 Msa0987370:CDS 55.0%
! CACGAAGTCGCTGTTTCCAC+TGG + chr6_4:37627668-37627687 Msa0987370:CDS 55.0%
CACGCGAAGGACTTTGCTGA+TGG + chr6_4:37628801-37628820 Msa0987370:CDS 55.0%
ACCGAAGGCTGTTGTGCATG+CGG + chr6_4:37629500-37629519 Msa0987370:intron 55.0%
GCTTAGATGCCACCTGTGTG+TGG + chr6_4:37629522-37629541 Msa0987370:intron 55.0%
!! GTTTGGTGTAGGGATGGGGA+GGG + chr6_4:37630423-37630442 Msa0987370:three_prime_UTR 55.0%
GTGTCTTCTTCATCGCCGGC+GGG - chr6_4:37627617-37627636 None:intergenic 60.0%
GGTGTCTTCTTCATCGCCGG+CGG - chr6_4:37627618-37627637 None:intergenic 60.0%
GCCGGCGATGAAGAAGACAC+CGG + chr6_4:37627617-37627636 Msa0987370:CDS 60.0%
GCCGGTGTCTTCTTCATCGC+CGG - chr6_4:37627621-37627640 None:intergenic 60.0%
GATCGGAGCGATTTGAGCGC+CGG - chr6_4:37627639-37627658 None:intergenic 60.0%
CAATGGAAGGAACGAGGGGC+AGG + chr6_4:37628244-37628263 Msa0987370:CDS 60.0%
GCCGCATGCACAACAGCCTT+CGG - chr6_4:37629504-37629523 None:intergenic 60.0%
CCATTGTGCCCACACACAGG+TGG - chr6_4:37629534-37629553 None:intergenic 60.0%
CCACCTGTGTGTGGGCACAA+TGG + chr6_4:37629531-37629550 Msa0987370:intron 60.0%
!! GGTTTGGTGTAGGGATGGGG+AGG + chr6_4:37630422-37630441 Msa0987370:three_prime_UTR 60.0%
GCGCCATTGTGCCCACACAC+AGG - chr6_4:37629537-37629556 None:intergenic 65.0%
! AGGGATGGGGAGGGTGCAGT+CGG + chr6_4:37630432-37630451 Msa0987370:three_prime_UTR 65.0%
! GGGATGGGGAGGGTGCAGTC+GGG + chr6_4:37630433-37630452 Msa0987370:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 37627517 37630735 37627517 ID=Msa0987370;Name=Msa0987370
chr6_4 mRNA 37627517 37630735 37627517 ID=Msa0987370-mRNA-1;Parent=Msa0987370;Name=Msa0987370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=58|1|1|1|0.75|0.6|5|522|224
chr6_4 exon 37627517 37627720 37627517 ID=Msa0987370-mRNA-1:exon:9361;Parent=Msa0987370-mRNA-1
chr6_4 exon 37628207 37628358 37628207 ID=Msa0987370-mRNA-1:exon:9362;Parent=Msa0987370-mRNA-1
chr6_4 exon 37628745 37628870 37628745 ID=Msa0987370-mRNA-1:exon:9363;Parent=Msa0987370-mRNA-1
chr6_4 exon 37629901 37630631 37629901 ID=Msa0987370-mRNA-1:exon:9364;Parent=Msa0987370-mRNA-1
chr6_4 exon 37630694 37630735 37630694 ID=Msa0987370-mRNA-1:exon:9365;Parent=Msa0987370-mRNA-1
chr6_4 five_prime_UTR 37627517 37627574 37627517 ID=Msa0987370-mRNA-1:five_prime_utr;Parent=Msa0987370-mRNA-1
chr6_4 CDS 37627575 37627720 37627575 ID=Msa0987370-mRNA-1:cds;Parent=Msa0987370-mRNA-1
chr6_4 CDS 37628207 37628358 37628207 ID=Msa0987370-mRNA-1:cds;Parent=Msa0987370-mRNA-1
chr6_4 CDS 37628745 37628870 37628745 ID=Msa0987370-mRNA-1:cds;Parent=Msa0987370-mRNA-1
chr6_4 CDS 37629901 37630151 37629901 ID=Msa0987370-mRNA-1:cds;Parent=Msa0987370-mRNA-1
chr6_4 three_prime_UTR 37630152 37630631 37630152 ID=Msa0987370-mRNA-1:three_prime_utr;Parent=Msa0987370-mRNA-1
chr6_4 three_prime_UTR 37630694 37630735 37630694 ID=Msa0987370-mRNA-1:three_prime_utr;Parent=Msa0987370-mRNA-1
Gene Sequence

>Msa0987370

ATGTCTACAAGCACCGATCATCACGAAGAGGAAGATGTTCCCGCCGGCGATGAAGAAGACACCGGCGCTCAAATCGCTCCGATCATCCAACTTCACGAAGTCGCTGTTTCCACTGGTGAAGAAGATGAAGAAGCTATTCTCGACCTAAAAGCGAAACTGTACCGATTTGACAAGGAAGGGAATCAATGGAAGGAACGAGGGGCAGGAACTGTGAAGTTTTTGAAGCATAAGGTTACTGGAAAAGTTAGGCTTGTTATGAGACAATCAAAGACTCTTAAGATCTGCGCCAATCATCTCATTTTGCCTAAAATGACTGTGCAAGAGCATGCTGGGAATGAGAAATCTTGTGTTTGGCACGCGAAGGACTTTGCTGATGGTGAATTGAAAGACGAGTTTTTCTGCATTCGATTTGCGTCAATTGAAAATTGCAGAAAGTTCATGGAGACATTTCAAGAAATTGCTGAATCCCTGAATAAAGAGGAAAGCAAGGATGCATCCACTGCTGCTGATCTCCTTAAGAATTTGAGCTTTGAAGGGAAAGCAGATGCAGAAAAGAAAGACGAAGAGAAATCTGAGGAGAAAACCGAGGAGAAAACTAAGGAGAAAGAGACACCAGAAAAAGAAAGCAAGGGAGATTCAGAAAAGAAAGTCGAAGAGCCTGGTTCATCTGCTTGA

Protein sequence

>Msa0987370

MSTSTDHHEEEDVPAGDEEDTGAQIAPIIQLHEVAVSTGEEDEEAILDLKAKLYRFDKEGNQWKERGAGTVKFLKHKVTGKVRLVMRQSKTLKICANHLILPKMTVQEHAGNEKSCVWHAKDFADGELKDEFFCIRFASIENCRKFMETFQEIAESLNKEESKDASTAADLLKNLSFEGKADAEKKDEEKSEEKTEEKTKEKETPEKESKGDSEKKVEEPGSSA*