Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335520 | XP_003611653.1 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335520 | sp|O82333|GH31_ARATH | 75.124 | 603 | 133 | 4 | 1 | 600 | 1 | 589 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335520 | G7K574 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0756270 | Msa1335520 | 0.935691 | 5.687917e-97 | -8.615850e-47 |
| Msa0835780 | Msa1335520 | 0.923518 | 2.390545e-89 | -8.615850e-47 |
| Msa0506370 | Msa1335520 | 0.801893 | 7.261065e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335520 | MtrunA17_Chr5g0401641 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1209 |
| Msa1335520 | MtrunA17_Chr5g0421331 | 77.907 | 602 | 117 | 4 | 1 | 600 | 1 | 588 | 0.0 | 962 |
| Msa1335520 | MtrunA17_Chr8g0361551 | 63.311 | 586 | 204 | 3 | 24 | 600 | 18 | 601 | 0.0 | 786 |
| Msa1335520 | MtrunA17_Chr2g0318991 | 60.033 | 603 | 226 | 4 | 12 | 600 | 2 | 603 | 0.0 | 757 |
| Msa1335520 | MtrunA17_Chr5g0401631 | 89.203 | 389 | 33 | 1 | 210 | 598 | 1 | 380 | 0.0 | 731 |
| Msa1335520 | MtrunA17_Chr4g0023301 | 59.172 | 507 | 200 | 4 | 97 | 600 | 1 | 503 | 0.0 | 641 |
| Msa1335520 | MtrunA17_Chr1g0195771 | 53.253 | 584 | 263 | 5 | 23 | 596 | 56 | 639 | 0.0 | 632 |
| Msa1335520 | MtrunA17_Chr7g0275471 | 39.759 | 581 | 339 | 6 | 15 | 591 | 5 | 578 | 1.93e-146 | 435 |
| Msa1335520 | MtrunA17_Chr8g0347381 | 37.801 | 582 | 343 | 8 | 15 | 590 | 5 | 573 | 1.16e-142 | 426 |
| Msa1335520 | MtrunA17_Chr8g0347421 | 37.786 | 569 | 337 | 6 | 20 | 583 | 10 | 566 | 1.68e-137 | 412 |
| Msa1335520 | MtrunA17_Chr8g0347391 | 37.457 | 582 | 345 | 8 | 15 | 590 | 12 | 580 | 2.12e-137 | 412 |
| Msa1335520 | MtrunA17_Chr5g0401621 | 90.341 | 176 | 17 | 0 | 1 | 176 | 1 | 176 | 2.60e-109 | 325 |
| Msa1335520 | MtrunA17_Chr8g0347431 | 41.500 | 400 | 218 | 5 | 196 | 590 | 11 | 399 | 2.98e-109 | 333 |
| Msa1335520 | MtrunA17_Chr7g0259291 | 30.783 | 575 | 366 | 13 | 24 | 579 | 8 | 569 | 4.86e-80 | 263 |
| Msa1335520 | MtrunA17_Chr4g0022401 | 31.343 | 402 | 264 | 3 | 22 | 411 | 20 | 421 | 4.65e-69 | 230 |
| Msa1335520 | MtrunA17_Chr8g0352391 | 32.000 | 325 | 163 | 7 | 271 | 591 | 1 | 271 | 1.62e-49 | 173 |
| Msa1335520 | MtrunA17_Chr1g0169871 | 42.857 | 168 | 96 | 0 | 327 | 494 | 138 | 305 | 1.98e-42 | 155 |
| Msa1335520 | MtrunA17_Chr4g0022391 | 37.356 | 174 | 102 | 3 | 411 | 583 | 11 | 178 | 7.58e-38 | 138 |
| Msa1335520 | MtrunA17_Chr7g0259401 | 30.824 | 279 | 155 | 7 | 145 | 418 | 4 | 249 | 2.32e-32 | 125 |
| Msa1335520 | MtrunA17_Chr4g0023291 | 64.368 | 87 | 31 | 0 | 23 | 109 | 32 | 118 | 8.33e-30 | 114 |
| Msa1335520 | MtrunA17_Chr8g0347441 | 47.525 | 101 | 53 | 0 | 20 | 120 | 10 | 110 | 3.89e-24 | 98.2 |
| Msa1335520 | MtrunA17_Chr8g0352401 | 39.604 | 101 | 61 | 0 | 20 | 120 | 1 | 101 | 3.69e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335520 | AT2G14960.1 | 75.124 | 603 | 133 | 4 | 1 | 600 | 1 | 589 | 0.0 | 946 |
| Msa1335520 | AT2G23170.1 | 75.537 | 605 | 133 | 6 | 1 | 600 | 1 | 595 | 0.0 | 934 |
| Msa1335520 | AT4G37390.1 | 74.257 | 606 | 147 | 4 | 1 | 600 | 1 | 603 | 0.0 | 925 |
| Msa1335520 | AT1G59500.1 | 70.216 | 601 | 172 | 4 | 1 | 599 | 1 | 596 | 0.0 | 857 |
| Msa1335520 | AT4G27260.1 | 64.034 | 595 | 204 | 4 | 14 | 600 | 16 | 608 | 0.0 | 802 |
| Msa1335520 | AT5G54510.1 | 64.094 | 596 | 202 | 5 | 14 | 600 | 16 | 608 | 0.0 | 801 |
| Msa1335520 | AT1G28130.1 | 53.322 | 602 | 261 | 7 | 14 | 596 | 4 | 604 | 0.0 | 657 |
| Msa1335520 | AT2G47750.1 | 50.000 | 584 | 277 | 8 | 21 | 596 | 9 | 585 | 0.0 | 591 |
| Msa1335520 | AT1G23160.1 | 47.945 | 584 | 285 | 6 | 13 | 588 | 5 | 577 | 0.0 | 561 |
| Msa1335520 | AT5G13320.3 | 46.573 | 569 | 288 | 4 | 27 | 588 | 15 | 574 | 0.0 | 545 |
| Msa1335520 | AT5G13320.1 | 46.573 | 569 | 288 | 4 | 27 | 588 | 15 | 574 | 0.0 | 545 |
| Msa1335520 | AT5G13320.2 | 46.573 | 569 | 288 | 4 | 27 | 588 | 30 | 589 | 0.0 | 544 |
| Msa1335520 | AT5G13370.1 | 46.620 | 577 | 300 | 6 | 23 | 594 | 13 | 586 | 0.0 | 537 |
| Msa1335520 | AT5G13360.3 | 46.296 | 594 | 305 | 6 | 7 | 594 | 78 | 663 | 0.0 | 529 |
| Msa1335520 | AT5G13360.1 | 46.886 | 578 | 296 | 5 | 23 | 594 | 13 | 585 | 0.0 | 528 |
| Msa1335520 | AT5G13360.2 | 46.886 | 578 | 296 | 5 | 23 | 594 | 13 | 585 | 0.0 | 528 |
| Msa1335520 | AT1G28130.2 | 55.098 | 461 | 190 | 5 | 153 | 596 | 1 | 461 | 1.27e-180 | 519 |
| Msa1335520 | AT5G13380.1 | 46.194 | 578 | 300 | 5 | 23 | 594 | 43 | 615 | 1.06e-177 | 517 |
| Msa1335520 | AT1G48660.2 | 43.869 | 579 | 312 | 5 | 19 | 592 | 2 | 572 | 6.74e-175 | 508 |
| Msa1335520 | AT5G13350.1 | 44.483 | 580 | 308 | 7 | 23 | 594 | 13 | 586 | 3.13e-174 | 507 |
| Msa1335520 | AT5G13350.2 | 44.483 | 580 | 308 | 7 | 23 | 594 | 13 | 586 | 3.13e-174 | 507 |
| Msa1335520 | AT1G48660.1 | 44.021 | 577 | 311 | 5 | 19 | 592 | 2 | 569 | 4.41e-174 | 506 |
| Msa1335520 | AT5G51470.1 | 43.739 | 567 | 307 | 4 | 25 | 588 | 14 | 571 | 2.23e-167 | 489 |
| Msa1335520 | AT1G48670.1 | 40.877 | 570 | 274 | 6 | 27 | 592 | 11 | 521 | 2.76e-147 | 436 |
| Msa1335520 | AT2G46370.4 | 38.765 | 583 | 339 | 8 | 15 | 591 | 16 | 586 | 2.32e-140 | 420 |
| Msa1335520 | AT2G46370.1 | 38.765 | 583 | 339 | 8 | 15 | 591 | 5 | 575 | 2.92e-140 | 420 |
| Msa1335520 | AT2G46370.2 | 38.765 | 583 | 339 | 8 | 15 | 591 | 5 | 575 | 2.92e-140 | 420 |
| Msa1335520 | AT5G51470.2 | 42.710 | 487 | 268 | 3 | 105 | 588 | 3 | 481 | 8.36e-138 | 410 |
| Msa1335520 | AT1G48670.2 | 46.394 | 416 | 213 | 3 | 180 | 592 | 2 | 410 | 6.56e-131 | 390 |
| Msa1335520 | AT2G46370.3 | 38.189 | 508 | 298 | 6 | 88 | 591 | 1 | 496 | 4.21e-122 | 370 |
| Msa1335520 | AT4G03400.2 | 32.762 | 583 | 371 | 6 | 17 | 583 | 5 | 582 | 2.41e-117 | 361 |
| Msa1335520 | AT4G03400.1 | 32.762 | 583 | 371 | 6 | 17 | 583 | 5 | 582 | 2.41e-117 | 361 |
| Msa1335520 | AT1G48690.1 | 39.378 | 193 | 113 | 2 | 19 | 211 | 2 | 190 | 6.02e-39 | 142 |
Find 133 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTAAGTATGTGTAATT+TGG | 0.150925 | tig0000496:-29104 | Msa1335520:three_prime_UTR |
| GGGATCCGGTTTAAGTATTT+TGG | 0.152591 | tig0000496:+30274 | None:intergenic |
| GCTTCATCTGAATGTTATTT+TGG | 0.191327 | tig0000496:-30077 | Msa1335520:CDS |
| CTGGACATTATGTTATCTAT+TGG | 0.236480 | tig0000496:-29635 | Msa1335520:CDS |
| CTTATAATCACAACTTATTC+AGG | 0.253897 | tig0000496:-29882 | Msa1335520:CDS |
| ATCCTTCAACGACGTCGTTC+TGG | 0.275444 | tig0000496:+29303 | None:intergenic |
| GCATACATTGTACATGGTTT+TGG | 0.286159 | tig0000496:+30098 | None:intergenic |
| CAACAGATATGTTCCTGATT+TGG | 0.286352 | tig0000496:-30669 | Msa1335520:intron |
| ACTTCATTTGGTTCTGTCAT+AGG | 0.297603 | tig0000496:+30041 | None:intergenic |
| TGTTGAATCTGAAATCCTTT+TGG | 0.297924 | tig0000496:-31345 | Msa1335520:CDS |
| TGATTAAGTATGTGTAATTT+GGG | 0.299108 | tig0000496:-29103 | Msa1335520:three_prime_UTR |
| TGGACATTATGTTATCTATT+GGG | 0.303558 | tig0000496:-29634 | Msa1335520:CDS |
| TTAGGTTCCTTCAGTTGAAT+TGG | 0.307911 | tig0000496:-30373 | Msa1335520:CDS |
| TTCGCCTGACGAATTTGAAT+TGG | 0.319624 | tig0000496:+29799 | None:intergenic |
| TCGCCTGACGAATTTGAATT+GGG | 0.323371 | tig0000496:+29800 | None:intergenic |
| TTTGTGTTAGGCCAGATTCT+TGG | 0.325164 | tig0000496:+30194 | None:intergenic |
| TGTAACAAAATTAGCGAGTT+CGG | 0.326262 | tig0000496:+30253 | None:intergenic |
| ACTGAGTACTTGAAACGATT+TGG | 0.330070 | tig0000496:-31197 | Msa1335520:CDS |
| TTAGCAATGCGTTGAATATC+AGG | 0.337815 | tig0000496:+31104 | None:intergenic |
| CCGGGCTTCTCCGAGCCATT+AGG | 0.338420 | tig0000496:-30391 | Msa1335520:CDS |
| GGACTTGTTAACACATTGTA+AGG | 0.342995 | tig0000496:+30521 | None:intergenic |
| GTAACCCATGTTTGGCATAA+TGG | 0.346043 | tig0000496:+30010 | None:intergenic |
| GACATGCACTGTTTGATAGA+AGG | 0.351174 | tig0000496:+30296 | None:intergenic |
| GTAACAAAATTAGCGAGTTC+GGG | 0.351298 | tig0000496:+30254 | None:intergenic |
| TTGTGTTAGGCCAGATTCTT+GGG | 0.352673 | tig0000496:+30195 | None:intergenic |
| CGTGAGTTTCACTCCTATAA+TGG | 0.353049 | tig0000496:-29385 | Msa1335520:CDS |
| GAGTCACGTGAGAGGGTTAT+AGG | 0.358227 | tig0000496:+29957 | None:intergenic |
| GAATCAATGTTGTTTGGTTA+TGG | 0.360826 | tig0000496:-29565 | Msa1335520:CDS |
| AGAGTAGCTGATAATTCAAT+TGG | 0.363308 | tig0000496:-29510 | Msa1335520:CDS |
| AAGAATGTTCAGGAGACAAT+TGG | 0.367565 | tig0000496:-30229 | Msa1335520:CDS |
| TTGAAACGATTTGGACTTAA+CGG | 0.369319 | tig0000496:-31188 | Msa1335520:CDS |
| TTTGTTACAAAAGAATGTTC+AGG | 0.371323 | tig0000496:-30239 | Msa1335520:CDS |
| TGGCACGTTTGAGGAACTAA+TGG | 0.378498 | tig0000496:-29460 | Msa1335520:CDS |
| TTCACCACACGTATCTCTAA+TGG | 0.380031 | tig0000496:+29486 | None:intergenic |
| TTATCAAAGCCGAAACAAAA+AGG | 0.380489 | tig0000496:+29009 | None:intergenic |
| GCTGATACAAAATCCATTCC+TGG | 0.383064 | tig0000496:-29654 | Msa1335520:CDS |
| TAGGTTCCTTCAGTTGAATT+GGG | 0.383968 | tig0000496:-30372 | Msa1335520:CDS |
| AATTCAAAGTAACCCATGTT+TGG | 0.385809 | tig0000496:+30002 | None:intergenic |
| GAACTTCATGGCGCATGATT+AGG | 0.390929 | tig0000496:+30438 | None:intergenic |
| GAGTCAAGAAGTTCCATTAT+AGG | 0.392466 | tig0000496:+29372 | None:intergenic |
| TTAGTCCTTCTCTACCTCAT+TGG | 0.392898 | tig0000496:-29329 | Msa1335520:CDS |
| ATAGGTGATAACAGCAACTT+TGG | 0.394928 | tig0000496:+31139 | None:intergenic |
| GGGTTCCTGTTTCAATGTCA+TGG | 0.396046 | tig0000496:+30339 | None:intergenic |
| AAATGAAGCTATCCTTTGTC+TGG | 0.396144 | tig0000496:-30498 | Msa1335520:CDS |
| CTCCGACTCGAAGAACTTCA+TGG | 0.400753 | tig0000496:+30426 | None:intergenic |
| TTGTAGTAGGCTGTTAGAAC+TGG | 0.404647 | tig0000496:+30575 | None:intergenic |
| CGTCTTGTTGAGTATTGATT+CGG | 0.407443 | tig0000496:-29772 | Msa1335520:CDS |
| ATGGTGTAGGACACTTCATT+TGG | 0.414625 | tig0000496:+30029 | None:intergenic |
| ACCTCAAGGTACTTTGTGTT+AGG | 0.415322 | tig0000496:+30182 | None:intergenic |
| CATGTCCAAAATACTTAAAC+CGG | 0.418636 | tig0000496:-30279 | Msa1335520:CDS |
| TTGGTTCTGTCATAGGCTTA+AGG | 0.419185 | tig0000496:+30048 | None:intergenic |
| TCAGCAAGGTCTACTAGCTT+TGG | 0.421816 | tig0000496:+29930 | None:intergenic |
| AGACAAAGGATAGCTTCATT+TGG | 0.426976 | tig0000496:+30500 | None:intergenic |
| GCCTACTATTCATCAAGAAA+TGG | 0.427538 | tig0000496:-30875 | Msa1335520:CDS |
| AACGTATAATCCCAAGAATC+TGG | 0.429037 | tig0000496:-30205 | Msa1335520:CDS |
| TACCTTGAGGTTATTGTCAC+TGG | 0.430760 | tig0000496:-30170 | Msa1335520:CDS |
| TCCATTTCTTGATGAATAGT+AGG | 0.437851 | tig0000496:+30874 | None:intergenic |
| ATGTATACTCAGATGCTTTG+TGG | 0.445009 | tig0000496:-30461 | Msa1335520:CDS |
| AGTGTTGAATCAATGTTGTT+TGG | 0.445864 | tig0000496:-29571 | Msa1335520:CDS |
| TGATTCAACACTTCTTCTGT+TGG | 0.447138 | tig0000496:+29582 | None:intergenic |
| ATTGGATGAGAGGACAAGAT+TGG | 0.448540 | tig0000496:+31068 | None:intergenic |
| TTAGTCCATGACATTGAAAC+AGG | 0.449357 | tig0000496:-30344 | Msa1335520:CDS |
| CTGGTAAGAAACTCTGAGAT+TGG | 0.450542 | tig0000496:+31050 | None:intergenic |
| TTCAACACTTCTTCTGTTGG+AGG | 0.453608 | tig0000496:+29585 | None:intergenic |
| AAATTAGCGAGTTCGGGATC+CGG | 0.454702 | tig0000496:+30260 | None:intergenic |
| GACCTTGCTGATGTTGAAAT+CGG | 0.457109 | tig0000496:-29918 | Msa1335520:CDS |
| CTCCAGAACGACGTCGTTGA+AGG | 0.467415 | tig0000496:-29305 | Msa1335520:exon |
| ATCAGGTAAAAGATCTTCAT+AGG | 0.467919 | tig0000496:+31121 | None:intergenic |
| AAAATGGGAAATTTGCTAGA+TGG | 0.469709 | tig0000496:-29202 | Msa1335520:three_prime_UTR |
| TAATGGAACTTCTTGACTCC+AGG | 0.471334 | tig0000496:-29368 | Msa1335520:CDS |
| TGAAACAGAAAGAAAGAAAG+AGG | 0.477371 | tig0000496:+31435 | None:intergenic |
| AGAATGTTCAGGAGACAATT+GGG | 0.479539 | tig0000496:-30228 | Msa1335520:CDS |
| AACACATTGTAAGGGTCAAA+TGG | 0.480939 | tig0000496:+30530 | None:intergenic |
| TTTGAGATTTCATTTCATCA+TGG | 0.486702 | tig0000496:-31369 | Msa1335520:exon |
| GGTGATATTCTTCAAGTGAC+CGG | 0.488267 | tig0000496:-29840 | Msa1335520:CDS |
| GGTTATTGTCACTGGTGCTA+TGG | 0.489560 | tig0000496:-30162 | Msa1335520:CDS |
| CGCCTGACGAATTTGAATTG+GGG | 0.491640 | tig0000496:+29801 | None:intergenic |
| GGTTACCACTGTAATAATCA+AGG | 0.497324 | tig0000496:+30123 | None:intergenic |
| CAATCTCAGAGTTTCTTACC+AGG | 0.504649 | tig0000496:-31049 | Msa1335520:intron |
| ATTCAACTGAAGGAACCTAA+TGG | 0.508820 | tig0000496:+30376 | None:intergenic |
| TACAGTTCAGGAACATCTGC+TGG | 0.508840 | tig0000496:-30913 | Msa1335520:intron |
| TTAATCAGTATAAAGTTCCT+AGG | 0.514790 | tig0000496:-29410 | Msa1335520:CDS |
| CAGAAGAAGGTGGTTCCAAA+AGG | 0.514827 | tig0000496:+31330 | None:intergenic |
| GGTCTTTGCCGTTACCGAGT+TGG | 0.514934 | tig0000496:-29861 | Msa1335520:CDS |
| GCAAGGTCTACTAGCTTTGG+AGG | 0.517582 | tig0000496:+29933 | None:intergenic |
| TTCGGATAAAACAGACGAAT+CGG | 0.523805 | tig0000496:-29754 | Msa1335520:CDS |
| GGGGTCGGAGTTATGAAATC+CGG | 0.536582 | tig0000496:+29821 | None:intergenic |
| CCTAATGGCTCGGAGAAGCC+CGG | 0.537712 | tig0000496:+30391 | None:intergenic |
| CTACACCATTATGCCAAACA+TGG | 0.539405 | tig0000496:-30015 | Msa1335520:CDS |
| GATGAAGCATACATTGTACA+TGG | 0.539933 | tig0000496:+30092 | None:intergenic |
| GCCTGACGAATTTGAATTGG+GGG | 0.543804 | tig0000496:+29802 | None:intergenic |
| TATGTTCCTGATTTGGACAA+AGG | 0.547413 | tig0000496:-30662 | Msa1335520:CDS |
| TTTGAATGTTTCACGATCAG+TGG | 0.548023 | tig0000496:+31163 | None:intergenic |
| GATAACATAATGTCCAGGAA+TGG | 0.549039 | tig0000496:+29641 | None:intergenic |
| ACAACTTACTGGTTCATCAC+TGG | 0.553006 | tig0000496:+30820 | None:intergenic |
| ACTTAATCATAATCTTTGAT+CGG | 0.556956 | tig0000496:+29117 | None:intergenic |
| GAGTAGCTGATAATTCAATT+GGG | 0.568160 | tig0000496:-29509 | Msa1335520:CDS |
| AAACTCTGAGATTGGATGAG+AGG | 0.580999 | tig0000496:+31058 | None:intergenic |
| GGACGTGCCACTAACCCACT+TGG | 0.582325 | tig0000496:+30596 | None:intergenic |
| CAATAGATAACATAATGTCC+AGG | 0.583043 | tig0000496:+29636 | None:intergenic |
| TGGAGGTGAGTCACGTGAGA+GGG | 0.584345 | tig0000496:+29950 | None:intergenic |
| CGCCATGAAGTTCTTCGAGT+CGG | 0.584929 | tig0000496:-30428 | Msa1335520:CDS |
| GGAGTCCAATGAGGTAGAGA+AGG | 0.586779 | tig0000496:+29324 | None:intergenic |
| CCACTGTAATAATCAAGGGT+TGG | 0.588012 | tig0000496:+30128 | None:intergenic |
| AATGGAACTTCTTGACTCCA+GGG | 0.589626 | tig0000496:-29367 | Msa1335520:CDS |
| ATTCAGCCCAATTCAACTGA+AGG | 0.591034 | tig0000496:+30366 | None:intergenic |
| CCAACCCTTGATTATTACAG+TGG | 0.591185 | tig0000496:-30128 | Msa1335520:CDS |
| GACTTGTTAACACATTGTAA+GGG | 0.591653 | tig0000496:+30522 | None:intergenic |
| CGTCGTTCTGGAGTCCAATG+AGG | 0.593147 | tig0000496:+29315 | None:intergenic |
| ACTGAAGGAACCTAATGGCT+CGG | 0.599341 | tig0000496:+30381 | None:intergenic |
| GAATATCACCAACTCGGTAA+CGG | 0.599476 | tig0000496:+29853 | None:intergenic |
| GGTTCATCACTGGCATGAGT+AGG | 0.600133 | tig0000496:+30830 | None:intergenic |
| GATATTCAACGCATTGCTAA+CGG | 0.601749 | tig0000496:-31101 | Msa1335520:CDS |
| CATGTTTGGCATAATGGTGT+AGG | 0.602304 | tig0000496:+30016 | None:intergenic |
| GTTACCACTGTAATAATCAA+GGG | 0.604520 | tig0000496:+30124 | None:intergenic |
| TACCGATTTCAACATCAGCA+AGG | 0.605061 | tig0000496:+29916 | None:intergenic |
| CTTGAAGAATATCACCAACT+CGG | 0.620317 | tig0000496:+29847 | None:intergenic |
| TTGAATTCAGTTTATAGACA+AGG | 0.625321 | tig0000496:-29534 | Msa1335520:CDS |
| TTGGAGGTGAGTCACGTGAG+AGG | 0.626134 | tig0000496:+29949 | None:intergenic |
| TTTGAAATGAATCCAGACAA+AGG | 0.634217 | tig0000496:+30486 | None:intergenic |
| GGAGTGAAACTCACGCACCT+AGG | 0.634419 | tig0000496:+29393 | None:intergenic |
| CACCAGTGACAATAACCTCA+AGG | 0.636499 | tig0000496:+30168 | None:intergenic |
| TACACCATTATGCCAAACAT+GGG | 0.650318 | tig0000496:-30014 | Msa1335520:CDS |
| GAGAGGACAAGATTGGAGAA+CGG | 0.654286 | tig0000496:+31075 | None:intergenic |
| ATGGATTATGCAATATCGCG+TGG | 0.656625 | tig0000496:-29441 | Msa1335520:CDS |
| TGAAGTTCTTCGAGTCGGAG+CGG | 0.662649 | tig0000496:-30423 | Msa1335520:CDS |
| GCCTAACACAAAGTACCTTG+AGG | 0.669941 | tig0000496:-30183 | Msa1335520:CDS |
| AAAATGAACTGAAACCACCC+TGG | 0.670829 | tig0000496:+29350 | None:intergenic |
| GGAACTTCTTGACTCCAGGG+TGG | 0.682265 | tig0000496:-29364 | Msa1335520:CDS |
| GATTAAGTATGTGTAATTTG+GGG | 0.683020 | tig0000496:-29102 | Msa1335520:three_prime_UTR |
| ATAGGTGATGAATCATCATG+TGG | 0.689225 | tig0000496:+29975 | None:intergenic |
| GGCTGTACAATAACTGACGA+CGG | 0.700187 | tig0000496:+30851 | None:intergenic |
| TGGGCCATTAGAGATACGTG+TGG | 0.738850 | tig0000496:-29490 | Msa1335520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAAAGCAAAA+TGG | - | tig0000496:31234-31253 | Msa1335520:CDS | 10.0% |
| !! | ATAATAATAAAAAGCAAAAT+GGG | - | tig0000496:31235-31254 | Msa1335520:CDS | 10.0% |
| !!! | ATTAAATACTGTTTCTTAAT+TGG | - | tig0000496:29757-29776 | Msa1335520:CDS | 15.0% |
| !!! | TTAAATACTGTTTCTTAATT+GGG | - | tig0000496:29758-29777 | Msa1335520:CDS | 15.0% |
| !!! | TTTATTTTTCCTTTTTGTTT+CGG | - | tig0000496:31434-31453 | Msa1335520:five_prime_UTR | 15.0% |
| !! | ACTACAATATAATAAACTCA+CGG | + | tig0000496:29683-29702 | None:intergenic | 20.0% |
| !! | ACTTAATCATAATCTTTGAT+CGG | + | tig0000496:31338-31357 | None:intergenic | 20.0% |
| !! | ATGATTAAGTATGTGTAATT+TGG | - | tig0000496:31348-31367 | Msa1335520:CDS | 20.0% |
| !! | TGATTAAGTATGTGTAATTT+GGG | - | tig0000496:31349-31368 | Msa1335520:CDS | 20.0% |
| !! | AACATTCAAAAGCAAAAATA+GGG | + | tig0000496:31414-31433 | None:intergenic | 20.0% |
| !! | AAACATTCAAAAGCAAAAAT+AGG | + | tig0000496:31415-31434 | None:intergenic | 20.0% |
| !! | TTTGAGATTTCATTTCATCA+TGG | - | tig0000496:29083-29102 | Msa1335520:three_prime_UTR | 25.0% |
| ! | TGAAGAAATGACAAAAAACA+CGG | - | tig0000496:29182-29201 | Msa1335520:three_prime_UTR | 25.0% |
| ! | TTTGTTACAAAAGAATGTTC+AGG | - | tig0000496:30213-30232 | Msa1335520:CDS | 25.0% |
| ! | CTTATAATCACAACTTATTC+AGG | - | tig0000496:30570-30589 | Msa1335520:CDS | 25.0% |
| ! | TGGACATTATGTTATCTATT+GGG | - | tig0000496:30818-30837 | Msa1335520:intron | 25.0% |
| ! | TTGAATTCAGTTTATAGACA+AGG | - | tig0000496:30918-30937 | Msa1335520:intron | 25.0% |
| ! | TTAATCAGTATAAAGTTCCT+AGG | - | tig0000496:31042-31061 | Msa1335520:intron | 25.0% |
| ! | GATTAAGTATGTGTAATTTG+GGG | - | tig0000496:31350-31369 | Msa1335520:CDS | 25.0% |
| TGAAACAGAAAGAAAGAAAG+AGG | + | tig0000496:29020-29039 | None:intergenic | 30.0% | |
| !! | TGTTGAATCTGAAATCCTTT+TGG | - | tig0000496:29107-29126 | Msa1335520:three_prime_UTR | 30.0% |
| ! | TTGAAACGATTTGGACTTAA+CGG | - | tig0000496:29264-29283 | Msa1335520:three_prime_UTR | 30.0% |
| ATCAGGTAAAAGATCTTCAT+AGG | + | tig0000496:29334-29353 | None:intergenic | 30.0% | |
| AGTATCAATGAATATGAACC+TGG | + | tig0000496:29424-29443 | None:intergenic | 30.0% | |
| GTGAATGAAAATTACAGTTC+AGG | - | tig0000496:29527-29546 | Msa1335520:CDS | 30.0% | |
| TCCATTTCTTGATGAATAGT+AGG | + | tig0000496:29581-29600 | None:intergenic | 30.0% | |
| CTATAACAGAAACAACTTAC+TGG | + | tig0000496:29646-29665 | None:intergenic | 30.0% | |
| !! | GACTTGTTAACACATTGTAA+GGG | + | tig0000496:29933-29952 | None:intergenic | 30.0% |
| ! | TTTGAAATGAATCCAGACAA+AGG | + | tig0000496:29969-29988 | None:intergenic | 30.0% |
| !!! | ATCAGTGATTTTTGGGTTTA+GGG | + | tig0000496:30136-30155 | None:intergenic | 30.0% |
| ! | TAGAAGGATCAGTGATTTTT+GGG | + | tig0000496:30143-30162 | None:intergenic | 30.0% |
| ! | ATAGAAGGATCAGTGATTTT+TGG | + | tig0000496:30144-30163 | None:intergenic | 30.0% |
| CATGTCCAAAATACTTAAAC+CGG | - | tig0000496:30173-30192 | Msa1335520:CDS | 30.0% | |
| TGTAACAAAATTAGCGAGTT+CGG | + | tig0000496:30202-30221 | None:intergenic | 30.0% | |
| GTTACCACTGTAATAATCAA+GGG | + | tig0000496:30331-30350 | None:intergenic | 30.0% | |
| !! | GCTTCATCTGAATGTTATTT+TGG | - | tig0000496:30375-30394 | Msa1335520:CDS | 30.0% |
| AATTCAAAGTAACCCATGTT+TGG | + | tig0000496:30453-30472 | None:intergenic | 30.0% | |
| CAATAGATAACATAATGTCC+AGG | + | tig0000496:30819-30838 | None:intergenic | 30.0% | |
| CTGGACATTATGTTATCTAT+TGG | - | tig0000496:30817-30836 | Msa1335520:intron | 30.0% | |
| ! | AGTGTTGAATCAATGTTGTT+TGG | - | tig0000496:30881-30900 | Msa1335520:CDS | 30.0% |
| ! | GAATCAATGTTGTTTGGTTA+TGG | - | tig0000496:30887-30906 | Msa1335520:CDS | 30.0% |
| AGAGTAGCTGATAATTCAAT+TGG | - | tig0000496:30942-30961 | Msa1335520:intron | 30.0% | |
| GAGTAGCTGATAATTCAATT+GGG | - | tig0000496:30943-30962 | Msa1335520:intron | 30.0% | |
| !! | AAAATGGGAAATTTGCTAGA+TGG | - | tig0000496:31250-31269 | Msa1335520:CDS | 30.0% |
| TTATCAAAGCCGAAACAAAA+AGG | + | tig0000496:31446-31465 | None:intergenic | 30.0% | |
| ! | TTTTCATCAACAGAAGAAGG+TGG | + | tig0000496:29135-29154 | None:intergenic | 35.0% |
| ! | CTCTTTTCATCAACAGAAGA+AGG | + | tig0000496:29138-29157 | None:intergenic | 35.0% |
| ACTGAGTACTTGAAACGATT+TGG | - | tig0000496:29255-29274 | Msa1335520:three_prime_UTR | 35.0% | |
| TTTGAATGTTTCACGATCAG+TGG | + | tig0000496:29292-29311 | None:intergenic | 35.0% | |
| ATAGGTGATAACAGCAACTT+TGG | + | tig0000496:29316-29335 | None:intergenic | 35.0% | |
| TTAGCAATGCGTTGAATATC+AGG | + | tig0000496:29351-29370 | None:intergenic | 35.0% | |
| GATATTCAACGCATTGCTAA+CGG | - | tig0000496:29351-29370 | Msa1335520:CDS | 35.0% | |
| GCCTACTATTCATCAAGAAA+TGG | - | tig0000496:29577-29596 | Msa1335520:CDS | 35.0% | |
| CAACAGATATGTTCCTGATT+TGG | - | tig0000496:29783-29802 | Msa1335520:CDS | 35.0% | |
| !! | TATGTTCCTGATTTGGACAA+AGG | - | tig0000496:29790-29809 | Msa1335520:CDS | 35.0% |
| CAGAAACAAAAACTCCAAGT+GGG | - | tig0000496:29842-29861 | Msa1335520:CDS | 35.0% | |
| !! | GAACTGTTCACTTTTGTAGT+AGG | + | tig0000496:29893-29912 | None:intergenic | 35.0% |
| AACACATTGTAAGGGTCAAA+TGG | + | tig0000496:29925-29944 | None:intergenic | 35.0% | |
| !! | GGACTTGTTAACACATTGTA+AGG | + | tig0000496:29934-29953 | None:intergenic | 35.0% |
| AGACAAAGGATAGCTTCATT+TGG | + | tig0000496:29955-29974 | None:intergenic | 35.0% | |
| AAATGAAGCTATCCTTTGTC+TGG | - | tig0000496:29954-29973 | Msa1335520:CDS | 35.0% | |
| ATGTATACTCAGATGCTTTG+TGG | - | tig0000496:29991-30010 | Msa1335520:CDS | 35.0% | |
| ATTCAACTGAAGGAACCTAA+TGG | + | tig0000496:30079-30098 | None:intergenic | 35.0% | |
| TTAGGTTCCTTCAGTTGAAT+TGG | - | tig0000496:30079-30098 | Msa1335520:CDS | 35.0% | |
| TAGGTTCCTTCAGTTGAATT+GGG | - | tig0000496:30080-30099 | Msa1335520:CDS | 35.0% | |
| TTAGTCCATGACATTGAAAC+AGG | - | tig0000496:30108-30127 | Msa1335520:CDS | 35.0% | |
| !!! | GATCAGTGATTTTTGGGTTT+AGG | + | tig0000496:30137-30156 | None:intergenic | 35.0% |
| GTAACAAAATTAGCGAGTTC+GGG | + | tig0000496:30201-30220 | None:intergenic | 35.0% | |
| AAGAATGTTCAGGAGACAAT+TGG | - | tig0000496:30223-30242 | Msa1335520:CDS | 35.0% | |
| AGAATGTTCAGGAGACAATT+GGG | - | tig0000496:30224-30243 | Msa1335520:CDS | 35.0% | |
| AACGTATAATCCCAAGAATC+TGG | - | tig0000496:30247-30266 | Msa1335520:CDS | 35.0% | |
| GGTTACCACTGTAATAATCA+AGG | + | tig0000496:30332-30351 | None:intergenic | 35.0% | |
| !!! | ACATTGTACATGGTTTTGGA+AGG | + | tig0000496:30353-30372 | None:intergenic | 35.0% |
| ! | GCATACATTGTACATGGTTT+TGG | + | tig0000496:30357-30376 | None:intergenic | 35.0% |
| GATGAAGCATACATTGTACA+TGG | + | tig0000496:30363-30382 | None:intergenic | 35.0% | |
| !! | ACTTCATTTGGTTCTGTCAT+AGG | + | tig0000496:30414-30433 | None:intergenic | 35.0% |
| TACACCATTATGCCAAACAT+GGG | - | tig0000496:30438-30457 | Msa1335520:CDS | 35.0% | |
| ATAGGTGATGAATCATCATG+TGG | + | tig0000496:30480-30499 | None:intergenic | 35.0% | |
| CTTGAAGAATATCACCAACT+CGG | + | tig0000496:30608-30627 | None:intergenic | 35.0% | |
| !! | CGTCTTGTTGAGTATTGATT+CGG | - | tig0000496:30680-30699 | Msa1335520:intron | 35.0% |
| TTCGGATAAAACAGACGAAT+CGG | - | tig0000496:30698-30717 | Msa1335520:intron | 35.0% | |
| GATAACATAATGTCCAGGAA+TGG | + | tig0000496:30814-30833 | None:intergenic | 35.0% | |
| TGATTCAACACTTCTTCTGT+TGG | + | tig0000496:30873-30892 | None:intergenic | 35.0% | |
| GAGTCAAGAAGTTCCATTAT+AGG | + | tig0000496:31083-31102 | None:intergenic | 35.0% | |
| ATTGGATGAGAGGACAAGAT+TGG | + | tig0000496:29387-29406 | None:intergenic | 40.0% | |
| !! | AAACTCTGAGATTGGATGAG+AGG | + | tig0000496:29397-29416 | None:intergenic | 40.0% |
| !! | CTGGTAAGAAACTCTGAGAT+TGG | + | tig0000496:29405-29424 | None:intergenic | 40.0% |
| CAATCTCAGAGTTTCTTACC+AGG | - | tig0000496:29403-29422 | Msa1335520:CDS | 40.0% | |
| !! | ACAACTTACTGGTTCATCAC+TGG | + | tig0000496:29635-29654 | None:intergenic | 40.0% |
| ! | GCTTTTCCTTTGTCCAAATC+AGG | + | tig0000496:29799-29818 | None:intergenic | 40.0% |
| GCAGAAACAAAAACTCCAAG+TGG | - | tig0000496:29841-29860 | Msa1335520:CDS | 40.0% | |
| !! | AAAAACTCCAAGTGGGTTAG+TGG | - | tig0000496:29849-29868 | Msa1335520:CDS | 40.0% |
| TTGTAGTAGGCTGTTAGAAC+TGG | + | tig0000496:29880-29899 | None:intergenic | 40.0% | |
| ATTCAGCCCAATTCAACTGA+AGG | + | tig0000496:30089-30108 | None:intergenic | 40.0% | |
| GACATGCACTGTTTGATAGA+AGG | + | tig0000496:30159-30178 | None:intergenic | 40.0% | |
| ! | GGGATCCGGTTTAAGTATTT+TGG | + | tig0000496:30181-30200 | None:intergenic | 40.0% |
| TTGTGTTAGGCCAGATTCTT+GGG | + | tig0000496:30260-30279 | None:intergenic | 40.0% | |
| TTTGTGTTAGGCCAGATTCT+TGG | + | tig0000496:30261-30280 | None:intergenic | 40.0% | |
| ! | ACCTCAAGGTACTTTGTGTT+AGG | + | tig0000496:30273-30292 | None:intergenic | 40.0% |
| TACCTTGAGGTTATTGTCAC+TGG | - | tig0000496:30282-30301 | Msa1335520:CDS | 40.0% | |
| CCACTGTAATAATCAAGGGT+TGG | + | tig0000496:30327-30346 | None:intergenic | 40.0% | |
| CCAACCCTTGATTATTACAG+TGG | - | tig0000496:30324-30343 | Msa1335520:CDS | 40.0% | |
| !! | TTGGTTCTGTCATAGGCTTA+AGG | + | tig0000496:30407-30426 | None:intergenic | 40.0% |
| ATGGTGTAGGACACTTCATT+TGG | + | tig0000496:30426-30445 | None:intergenic | 40.0% | |
| CATGTTTGGCATAATGGTGT+AGG | + | tig0000496:30439-30458 | None:intergenic | 40.0% | |
| CTACACCATTATGCCAAACA+TGG | - | tig0000496:30437-30456 | Msa1335520:CDS | 40.0% | |
| GTAACCCATGTTTGGCATAA+TGG | + | tig0000496:30445-30464 | None:intergenic | 40.0% | |
| GACCTTGCTGATGTTGAAAT+CGG | - | tig0000496:30534-30553 | Msa1335520:CDS | 40.0% | |
| !! | TACCGATTTCAACATCAGCA+AGG | + | tig0000496:30539-30558 | None:intergenic | 40.0% |
| GAATATCACCAACTCGGTAA+CGG | + | tig0000496:30602-30621 | None:intergenic | 40.0% | |
| GGTGATATTCTTCAAGTGAC+CGG | - | tig0000496:30612-30631 | Msa1335520:CDS | 40.0% | |
| TCGCCTGACGAATTTGAATT+GGG | + | tig0000496:30655-30674 | None:intergenic | 40.0% | |
| TTCGCCTGACGAATTTGAAT+TGG | + | tig0000496:30656-30675 | None:intergenic | 40.0% | |
| GCTGATACAAAATCCATTCC+TGG | - | tig0000496:30798-30817 | Msa1335520:intron | 40.0% | |
| ! | CTATTGGGAGCTTTTGATGA+AGG | - | tig0000496:30833-30852 | Msa1335520:CDS | 40.0% |
| TTCAACACTTCTTCTGTTGG+AGG | + | tig0000496:30870-30889 | None:intergenic | 40.0% | |
| TTCACCACACGTATCTCTAA+TGG | + | tig0000496:30969-30988 | None:intergenic | 40.0% | |
| GAGATACGTGTGGTGAAAAA+TGG | - | tig0000496:30972-30991 | Msa1335520:intron | 40.0% | |
| ! | ATGGATTATGCAATATCGCG+TGG | - | tig0000496:31011-31030 | Msa1335520:intron | 40.0% |
| CGTGAGTTTCACTCCTATAA+TGG | - | tig0000496:31067-31086 | Msa1335520:CDS | 40.0% | |
| TAATGGAACTTCTTGACTCC+AGG | - | tig0000496:31084-31103 | Msa1335520:CDS | 40.0% | |
| AATGGAACTTCTTGACTCCA+GGG | - | tig0000496:31085-31104 | Msa1335520:CDS | 40.0% | |
| AAAATGAACTGAAACCACCC+TGG | + | tig0000496:31105-31124 | None:intergenic | 40.0% | |
| TTAGTCCTTCTCTACCTCAT+TGG | - | tig0000496:31123-31142 | Msa1335520:CDS | 40.0% | |
| CAGAAGAAGGTGGTTCCAAA+AGG | + | tig0000496:29125-29144 | None:intergenic | 45.0% | |
| GAGAGGACAAGATTGGAGAA+CGG | + | tig0000496:29380-29399 | None:intergenic | 45.0% | |
| TACAGTTCAGGAACATCTGC+TGG | - | tig0000496:29539-29558 | Msa1335520:CDS | 45.0% | |
| GGCTGTACAATAACTGACGA+CGG | + | tig0000496:29604-29623 | None:intergenic | 45.0% | |
| GAACTTCATGGCGCATGATT+AGG | + | tig0000496:30017-30036 | None:intergenic | 45.0% | |
| ACTGAAGGAACCTAATGGCT+CGG | + | tig0000496:30074-30093 | None:intergenic | 45.0% | |
| GGGTTCCTGTTTCAATGTCA+TGG | + | tig0000496:30116-30135 | None:intergenic | 45.0% | |
| AAATTAGCGAGTTCGGGATC+CGG | + | tig0000496:30195-30214 | None:intergenic | 45.0% | |
| ! | GCCTAACACAAAGTACCTTG+AGG | - | tig0000496:30269-30288 | Msa1335520:CDS | 45.0% |
| CACCAGTGACAATAACCTCA+AGG | + | tig0000496:30287-30306 | None:intergenic | 45.0% | |
| ! | GGTTATTGTCACTGGTGCTA+TGG | - | tig0000496:30290-30309 | Msa1335520:CDS | 45.0% |
| ! | TCAGCAAGGTCTACTAGCTT+TGG | + | tig0000496:30525-30544 | None:intergenic | 45.0% |
| GACGAATTTGAATTGGGGGT+CGG | + | tig0000496:30649-30668 | None:intergenic | 45.0% | |
| ACCCCCAATTCAAATTCGTC+AGG | - | tig0000496:30649-30668 | Msa1335520:CDS | 45.0% | |
| GCCTGACGAATTTGAATTGG+GGG | + | tig0000496:30653-30672 | None:intergenic | 45.0% | |
| CGCCTGACGAATTTGAATTG+GGG | + | tig0000496:30654-30673 | None:intergenic | 45.0% | |
| GGTGAAAAATGGCACGTTTG+AGG | - | tig0000496:30983-31002 | Msa1335520:intron | 45.0% | |
| TGGCACGTTTGAGGAACTAA+TGG | - | tig0000496:30992-31011 | Msa1335520:intron | 45.0% | |
| GGTTCATCACTGGCATGAGT+AGG | + | tig0000496:29625-29644 | None:intergenic | 50.0% | |
| CGCCATGAAGTTCTTCGAGT+CGG | - | tig0000496:30024-30043 | Msa1335520:CDS | 50.0% | |
| ! | CTCCGACTCGAAGAACTTCA+TGG | + | tig0000496:30029-30048 | None:intergenic | 50.0% |
| TGAAGTTCTTCGAGTCGGAG+CGG | - | tig0000496:30029-30048 | Msa1335520:CDS | 50.0% | |
| GAGTCACGTGAGAGGGTTAT+AGG | + | tig0000496:30498-30517 | None:intergenic | 50.0% | |
| !! | GCAAGGTCTACTAGCTTTGG+AGG | + | tig0000496:30522-30541 | None:intergenic | 50.0% |
| GGGGTCGGAGTTATGAAATC+CGG | + | tig0000496:30634-30653 | None:intergenic | 50.0% | |
| TGGGCCATTAGAGATACGTG+TGG | - | tig0000496:30962-30981 | Msa1335520:intron | 50.0% | |
| GGAGTCCAATGAGGTAGAGA+AGG | + | tig0000496:31131-31150 | None:intergenic | 50.0% | |
| ATCCTTCAACGACGTCGTTC+TGG | + | tig0000496:31152-31171 | None:intergenic | 50.0% | |
| TGGAGGTGAGTCACGTGAGA+GGG | + | tig0000496:30505-30524 | None:intergenic | 55.0% | |
| TTGGAGGTGAGTCACGTGAG+AGG | + | tig0000496:30506-30525 | None:intergenic | 55.0% | |
| GGTCTTTGCCGTTACCGAGT+TGG | - | tig0000496:30591-30610 | Msa1335520:CDS | 55.0% | |
| GGAGTGAAACTCACGCACCT+AGG | + | tig0000496:31062-31081 | None:intergenic | 55.0% | |
| GGAACTTCTTGACTCCAGGG+TGG | - | tig0000496:31088-31107 | Msa1335520:CDS | 55.0% | |
| !! | CGTCGTTCTGGAGTCCAATG+AGG | + | tig0000496:31140-31159 | None:intergenic | 55.0% |
| CTCCAGAACGACGTCGTTGA+AGG | - | tig0000496:31147-31166 | Msa1335520:CDS | 55.0% | |
| ! | GGACGTGCCACTAACCCACT+TGG | + | tig0000496:29859-29878 | None:intergenic | 60.0% |
| ! | GTCGGAGCGGTTTTCGCTTC+CGG | - | tig0000496:30042-30061 | Msa1335520:CDS | 60.0% |
| ! | TCGGAGCGGTTTTCGCTTCC+GGG | - | tig0000496:30043-30062 | Msa1335520:CDS | 60.0% |
| ! | CCTAATGGCTCGGAGAAGCC+CGG | + | tig0000496:30064-30083 | None:intergenic | 60.0% |
| CCGGGCTTCTCCGAGCCATT+AGG | - | tig0000496:30061-30080 | Msa1335520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000496 | gene | 28995 | 31479 | 28995 | ID=Msa1335520;Name=Msa1335520 |
| tig0000496 | mRNA | 28995 | 31479 | 28995 | ID=Msa1335520-mRNA-1;Parent=Msa1335520;Name=Msa1335520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=107|1|1|1|1|1|3|313|600 |
| tig0000496 | exon | 28995 | 30685 | 28995 | ID=Msa1335520-mRNA-1:exon:250;Parent=Msa1335520-mRNA-1 |
| tig0000496 | exon | 30829 | 30930 | 30829 | ID=Msa1335520-mRNA-1:exon:249;Parent=Msa1335520-mRNA-1 |
| tig0000496 | exon | 31050 | 31479 | 31050 | ID=Msa1335520-mRNA-1:exon:248;Parent=Msa1335520-mRNA-1 |
| tig0000496 | five_prime_UTR | 31373 | 31479 | 31373 | ID=Msa1335520-mRNA-1:five_prime_utr;Parent=Msa1335520-mRNA-1 |
| tig0000496 | CDS | 31050 | 31372 | 31050 | ID=Msa1335520-mRNA-1:cds;Parent=Msa1335520-mRNA-1 |
| tig0000496 | CDS | 30829 | 30930 | 30829 | ID=Msa1335520-mRNA-1:cds;Parent=Msa1335520-mRNA-1 |
| tig0000496 | CDS | 29308 | 30685 | 29308 | ID=Msa1335520-mRNA-1:cds;Parent=Msa1335520-mRNA-1 |
| tig0000496 | three_prime_UTR | 28995 | 29307 | 28995 | ID=Msa1335520-mRNA-1:three_prime_utr;Parent=Msa1335520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
