AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506370 MtrunA17_Chr3g0107741 93.750 224 14 0 1 224 1 224 1.88e-157 434
Msa0506370 MtrunA17_Chr3g0107731 87.054 224 29 0 1 224 1 224 1.54e-146 407
Msa0506370 MtrunA17_Chr2g0312771 63.594 217 79 0 8 224 3 219 1.86e-103 298
Msa0506370 MtrunA17_Chr2g0312751 60.829 217 85 0 8 224 3 219 2.12e-100 290
Msa0506370 MtrunA17_Chr2g0312781 61.321 212 82 0 8 219 20 231 6.78e-97 282
Msa0506370 MtrunA17_Chr2g0312731 59.908 217 87 0 8 224 3 219 5.11e-96 279
Msa0506370 MtrunA17_Chr2g0312811 60.274 219 85 1 8 224 3 221 3.29e-93 272
Msa0506370 MtrunA17_Chr2g0312681 57.604 217 92 0 8 224 3 219 2.27e-92 270
Msa0506370 MtrunA17_Chr2g0312691 59.908 217 87 0 8 224 3 219 6.60e-91 266
Msa0506370 MtrunA17_Chr2g0312711 58.525 217 89 1 8 224 3 218 1.31e-88 260
Msa0506370 MtrunA17_Chr2g0312791 59.817 219 86 2 8 224 3 221 5.27e-88 259
Msa0506370 MtrunA17_Chr2g0312721 58.252 206 86 0 8 213 3 208 9.60e-88 258
Msa0506370 MtrunA17_Chr8g0357211 54.378 217 99 0 8 224 3 219 1.42e-87 258
Msa0506370 MtrunA17_Chr8g0357241 53.917 217 100 0 8 224 3 219 3.30e-87 257
Msa0506370 MtrunA17_Chr4g0069471 58.289 187 75 2 2 187 18 202 1.07e-74 224
Msa0506370 MtrunA17_Chr5g0433801 50.000 218 107 2 8 224 5 221 7.67e-74 223
Msa0506370 MtrunA17_Chr5g0415411 41.818 220 119 4 5 215 1 220 7.54e-48 157
Msa0506370 MtrunA17_Chr7g0240681 40.566 212 120 5 6 213 4 213 2.02e-45 150
Msa0506370 MtrunA17_Chr7g0240541 40.271 221 126 6 6 222 4 222 6.30e-45 149
Msa0506370 MtrunA17_Chr8g0363751 39.450 218 117 4 5 210 1 215 3.96e-44 147
Msa0506370 MtrunA17_Chr4g0008781 40.000 215 116 7 6 213 5 213 3.13e-43 145
Msa0506370 MtrunA17_Chr8g0379581 39.189 222 131 3 5 223 1 221 6.75e-43 144
Msa0506370 MtrunA17_Chr3g0132581 46.154 169 90 1 5 173 1 168 1.11e-42 144
Msa0506370 MtrunA17_Chr1g0196661 39.904 208 120 3 10 213 4 210 1.27e-42 143
Msa0506370 MtrunA17_Chr7g0240531 41.150 226 125 7 1 222 1 222 1.80e-42 143
Msa0506370 MtrunA17_Chr7g0240631 37.963 216 127 6 1 213 1 212 4.25e-42 142
Msa0506370 MtrunA17_Chr7g0240641 37.963 216 127 5 1 213 1 212 5.87e-42 142
Msa0506370 MtrunA17_Chr7g0240551 39.381 226 129 7 1 222 1 222 8.15e-42 141
Msa0506370 MtrunA17_Chr7g0240691 39.048 210 122 4 8 213 36 243 5.22e-41 140
Msa0506370 MtrunA17_Chr1g0196721 40.000 210 121 3 9 214 2 210 8.13e-41 139
Msa0506370 MtrunA17_Chr5g0417011 33.816 207 129 3 10 209 8 213 9.47e-41 139
Msa0506370 MtrunA17_Chr7g0240561 37.900 219 117 6 5 213 3 212 1.39e-40 138
Msa0506370 MtrunA17_Chr4g0008791 37.383 214 127 5 5 213 1 212 1.64e-40 138
Msa0506370 MtrunA17_Chr4g0029341 39.631 217 126 3 8 220 3 218 2.17e-40 137
Msa0506370 MtrunA17_Chr1g0196771 40.845 213 107 8 8 210 2 205 2.21e-40 137
Msa0506370 MtrunA17_Chr7g0240511 40.845 213 115 7 1 211 1 204 9.88e-40 136
Msa0506370 MtrunA17_Chr1g0196711 39.423 208 121 4 10 213 4 210 1.32e-38 133
Msa0506370 MtrunA17_Chr7g0240611 36.019 211 126 5 6 213 4 208 1.60e-38 133
Msa0506370 MtrunA17_Chr8g0379561 39.901 203 119 2 5 205 2 203 1.95e-38 132
Msa0506370 MtrunA17_Chr1g0196691 37.864 206 118 5 16 214 35 237 6.75e-38 132
Msa0506370 MtrunA17_Chr6g0483141 38.235 204 112 6 23 217 17 215 1.16e-37 130
Msa0506370 MtrunA17_Chr7g0240581 37.981 208 122 5 1 205 1 204 2.06e-37 130
Msa0506370 MtrunA17_Chr7g0240671 36.098 205 126 4 10 213 5 205 2.69e-36 127
Msa0506370 MtrunA17_Chr7g0240521 41.346 208 115 6 1 205 8 211 9.32e-36 126
Msa0506370 MtrunA17_Chr8g0391631 41.718 163 82 3 4 156 16 175 7.71e-35 122
Msa0506370 MtrunA17_Chr1g0212301 38.308 201 118 5 10 205 4 203 2.28e-34 122
Msa0506370 MtrunA17_Chr7g0240651 36.364 209 124 5 8 213 6 208 6.18e-34 121
Msa0506370 MtrunA17_Chr7g0240661 37.321 209 126 5 6 213 4 208 2.11e-33 120
Msa0506370 MtrunA17_Chr2g0313561 60.294 68 27 0 52 119 1 68 4.49e-25 94.0
Msa0506370 MtrunA17_Chr7g0263221 30.303 198 121 8 20 210 37 224 3.17e-14 69.3
Msa0506370 MtrunA17_Chr1g0181861 28.638 213 128 10 20 221 38 237 5.52e-12 63.2
Msa0506370 MtrunA17_Chr5g0415421 45.205 73 38 1 33 103 11 83 3.60e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506370 AT1G17180.1 63.594 217 79 0 8 224 3 219 3.78e-100 290
Msa0506370 AT1G78370.1 61.137 211 82 0 11 221 6 216 1.43e-99 288
Msa0506370 AT1G78380.1 61.972 213 81 0 8 220 3 215 1.45e-99 288
Msa0506370 AT1G17170.1 62.212 217 81 1 8 224 3 218 3.10e-94 275
Msa0506370 AT1G78360.1 58.796 216 88 1 10 224 5 220 6.86e-91 266
Msa0506370 AT1G78340.1 56.604 212 92 0 8 219 3 214 1.01e-89 263
Msa0506370 AT1G53680.1 57.143 217 91 2 10 224 8 224 2.30e-87 258
Msa0506370 AT1G78320.1 58.333 204 85 0 7 210 2 205 1.07e-83 248
Msa0506370 AT1G17190.1 52.294 218 104 0 5 222 1 218 1.04e-80 241
Msa0506370 AT3G43800.1 50.226 221 106 3 5 221 1 221 1.17e-73 223
Msa0506370 AT1G78320.2 50.490 204 74 1 7 210 2 178 5.13e-66 202
Msa0506370 AT1G10360.1 43.636 220 116 4 5 216 1 220 1.89e-51 166
Msa0506370 AT1G10370.1 41.818 220 120 4 5 216 1 220 9.48e-47 154
Msa0506370 AT2G29420.1 39.614 207 122 3 1 205 1 206 1.85e-46 154
Msa0506370 AT3G09270.1 38.942 208 122 4 7 210 4 210 5.96e-46 152
Msa0506370 AT1G59700.1 42.009 219 112 6 7 213 4 219 1.74e-45 151
Msa0506370 AT1G74590.1 37.333 225 125 5 7 220 5 224 2.40e-45 151
Msa0506370 AT5G62480.1 39.252 214 119 5 6 209 5 217 1.73e-43 146
Msa0506370 AT2G29440.1 39.512 205 112 4 8 205 5 204 1.40e-41 141
Msa0506370 AT1G27130.1 35.193 233 136 6 1 224 1 227 1.71e-39 135
Msa0506370 AT2G29490.1 39.130 207 112 5 7 205 5 205 3.46e-39 135
Msa0506370 AT1G69930.1 34.842 221 137 3 1 214 4 224 4.98e-39 135
Msa0506370 AT1G59670.1 37.220 223 131 5 7 220 4 226 1.13e-38 134
Msa0506370 AT2G29480.1 39.130 207 112 6 7 205 5 205 1.05e-37 131
Msa0506370 AT2G29450.1 37.156 218 125 5 7 217 4 216 2.27e-37 130
Msa0506370 AT1G27140.1 35.000 220 130 5 1 210 1 217 4.46e-37 130
Msa0506370 AT2G29460.1 37.438 203 121 4 7 205 5 205 4.31e-34 122
Msa0506370 AT1G69920.1 31.556 225 141 5 1 214 26 248 6.48e-34 122
Msa0506370 AT2G29470.1 35.321 218 127 6 7 212 5 220 4.00e-33 119
Msa0506370 AT5G62480.3 31.308 214 109 6 6 209 5 190 3.17e-24 96.3
Msa0506370 AT5G62480.2 31.308 214 110 6 6 209 5 191 3.27e-24 95.9
Msa0506370 AT5G02780.2 30.556 180 111 8 20 194 41 211 5.17e-11 60.8

Find 46 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTAAAATATGAATTAAAT+TGG 0.256299 3_4:+52647083 Msa0506370:three_prime_UTR
GTTTAGATCATTGTGGTGTT+TGG 0.279748 3_4:-52644865 None:intergenic
AGCGATCACAAGCCAAGTTT+TGG 0.285418 3_4:+52645183 Msa0506370:CDS
CCTCACCCTCACAAAATCTA+TGG 0.311690 3_4:+52646954 Msa0506370:CDS
CTCTTATACCCTTCACTAGT+TGG 0.329236 3_4:+52646823 Msa0506370:CDS
AAGTCATCTCCATCAAAATA+TGG 0.330764 3_4:-52646783 None:intergenic
TATATTAAGTGATTCACATA+TGG 0.358906 3_4:-52645099 None:intergenic
TAAATTGGCATATATTGTTA+AGG 0.375974 3_4:+52647098 Msa0506370:three_prime_UTR
TTTAGATCATTGTGGTGTTT+GGG 0.381027 3_4:-52644864 None:intergenic
TTTCCATTATGAATCAAAAC+CGG 0.387956 3_4:-52645074 None:intergenic
TTTACACTTACGAGATATAT+GGG 0.406047 3_4:+52646847 Msa0506370:CDS
GTGTCCTAAGCTTGTAGCTT+GGG 0.417667 3_4:+52646890 Msa0506370:CDS
TTGGCCCAAGCTACAAGCTT+AGG 0.422848 3_4:-52646894 None:intergenic
CTTTATACAAAGTTCTTCTC+CGG 0.441198 3_4:-52647045 None:intergenic
GTTGCGGATTGCAAGGGAAC+CGG 0.441879 3_4:+52647026 Msa0506370:three_prime_UTR
ATATTAAGTGATTCACATAT+GGG 0.451582 3_4:-52645098 None:intergenic
AGCTTGTAGCTTGGGCCAAA+AGG 0.454879 3_4:+52646898 Msa0506370:CDS
AATGAGAGTGAAAATTGCTT+TGG 0.455938 3_4:+52644959 Msa0506370:CDS
TTGAGTACATTGATGAAGCT+TGG 0.459310 3_4:+52645123 Msa0506370:CDS
TTGGCTTGTGATCGCTTGAA+AGG 0.469012 3_4:-52645176 None:intergenic
GAAAATTGCTTTGGAAGAGA+AGG 0.474522 3_4:+52644968 Msa0506370:CDS
AATGTAATCTCCCCAAAACT+TGG 0.487995 3_4:-52645195 None:intergenic
TTCCATTATGAATCAAAACC+GGG 0.499687 3_4:-52645073 None:intergenic
AGCTTGGGCCAAAAGGTGTA+TGG 0.501382 3_4:+52646905 Msa0506370:CDS
AAAATTGCTTTGGAAGAGAA+GGG 0.501739 3_4:+52644969 Msa0506370:CDS
TGGCTTGTGATCGCTTGAAA+GGG 0.511102 3_4:-52645175 None:intergenic
ACTCTCATTGCATATACGCT+TGG 0.513803 3_4:-52644945 None:intergenic
AGGAAAGGTTGAAGAACAAG+AGG 0.520776 3_4:+52646701 Msa0506370:CDS
AAGACTCTAGAAGATGAGCT+TGG 0.522791 3_4:+52646753 Msa0506370:CDS
AATGAGTCAAAACATGACTA+AGG 0.525858 3_4:+52644896 Msa0506370:exon
ACAGCATTCGAAGGAAGCTA+TGG 0.529203 3_4:+52646676 Msa0506370:CDS
CGTTTGATTATAAGCTAAGA+CGG 0.539379 3_4:+52647175 Msa0506370:three_prime_UTR
AGTGTCCTAAGCTTGTAGCT+TGG 0.541196 3_4:+52646889 Msa0506370:CDS
TGACTTTGGGTATGTTGATG+TGG 0.546781 3_4:+52646800 Msa0506370:CDS
AGTGTAAAACCAACTAGTGA+AGG 0.558553 3_4:-52646832 None:intergenic
AAGGTTGAAGAACAAGAGGA+AGG 0.559445 3_4:+52646705 Msa0506370:CDS
GGGTCAGAGGGCAAAAGAGA+AGG 0.585068 3_4:-52645155 None:intergenic
TGATCGCTTGAAAGGGTCAG+AGG 0.611869 3_4:-52645168 None:intergenic
GTGTAAAACCAACTAGTGAA+GGG 0.625155 3_4:-52646831 None:intergenic
ATTCGAAGGAAGCTATGGAA+AGG 0.640495 3_4:+52646681 Msa0506370:CDS
GATCGCTTGAAAGGGTCAGA+GGG 0.644766 3_4:-52645167 None:intergenic
TGTAGGTATACAGCATTCGA+AGG 0.646256 3_4:+52646667 Msa0506370:intron
TTAGATGGTTTAGATCATTG+TGG 0.647898 3_4:-52644872 None:intergenic
ATGCGGTATAAACAGAAACA+TGG 0.648867 3_4:+52646984 Msa0506370:CDS
AAGGAAGCTATGGAAAGGAA+AGG 0.650275 3_4:+52646686 Msa0506370:CDS
AAACATGACTAAGGACAGTG+TGG 0.712979 3_4:+52644905 Msa0506370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTAATTTTAAAATA+GGG - chr3_4:52645635-52645654 None:intergenic 0.0%
!!! ATAAAAATTAATTTTAAAAT+AGG - chr3_4:52645636-52645655 None:intergenic 0.0%
!!! ATATGATTTTACTTTAAAAT+AGG + chr3_4:52645874-52645893 Msa0506370:intron 10.0%
!!! TATGATTTTACTTTAAAATA+GGG + chr3_4:52645875-52645894 Msa0506370:intron 10.0%
!!! ATTTGTATGTTTTTTATCAA+TGG + chr3_4:52645270-52645289 Msa0506370:intron 15.0%
!! GTTAAATGTAAAATGATTTA+GGG + chr3_4:52645501-52645520 Msa0506370:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr3_4:52645906-52645925 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr3_4:52645906-52645925 Msa0506370:intron 15.0%
!! ATATTCAAACATAAATCATT+GGG - chr3_4:52646009-52646028 None:intergenic 15.0%
!! TATATTCAAACATAAATCAT+TGG - chr3_4:52646010-52646029 None:intergenic 15.0%
!! CACTTATTGTTAAAAATTAT+TGG + chr3_4:52646156-52646175 Msa0506370:intron 15.0%
!! ACCAAAAAAAATAAAAATCA+AGG + chr3_4:52646232-52646251 Msa0506370:intron 15.0%
!! AAAATATGGTTCAATATTTA+TGG - chr3_4:52646435-52646454 None:intergenic 15.0%
!! GACTAAAATATGAATTAAAT+TGG + chr3_4:52647083-52647102 Msa0506370:three_prime_UTR 15.0%
!! AAAGATGAAAAATGTATTAT+TGG + chr3_4:52647224-52647243 Msa0506370:three_prime_UTR 15.0%
!! ATATTAAGTGATTCACATAT+GGG - chr3_4:52645101-52645120 None:intergenic 20.0%
!! TATATTAAGTGATTCACATA+TGG - chr3_4:52645102-52645121 None:intergenic 20.0%
!! AATCGATTATGATTAAAAGT+TGG + chr3_4:52645479-52645498 Msa0506370:intron 20.0%
!! GGTTAAATGTAAAATGATTT+AGG + chr3_4:52645500-52645519 Msa0506370:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr3_4:52645966-52645985 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr3_4:52645905-52645924 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr3_4:52645608-52645627 Msa0506370:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr3_4:52645905-52645924 Msa0506370:intron 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG + chr3_4:52645965-52645984 Msa0506370:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr3_4:52645966-52645985 Msa0506370:intron 20.0%
!!! TTCACTTTTACATGAATAAA+AGG - chr3_4:52646187-52646206 None:intergenic 20.0%
!! TGAATTGCATAATAAATTCA+AGG + chr3_4:52646203-52646222 Msa0506370:intron 20.0%
!!! GCCTTGATTTTTATTTTTTT+TGG - chr3_4:52646236-52646255 None:intergenic 20.0%
!!! TGTTTGTTTGATTTCAATTT+TGG - chr3_4:52646396-52646415 None:intergenic 20.0%
!! ATATACTAGTTCACAAAATA+TGG - chr3_4:52646449-52646468 None:intergenic 20.0%
!! ATGGATAATAATGTAAAAGT+GGG - chr3_4:52646490-52646509 None:intergenic 20.0%
!! TATGGATAATAATGTAAAAG+TGG - chr3_4:52646491-52646510 None:intergenic 20.0%
!!! AAATACCAAAATTGACTTTA+TGG - chr3_4:52646568-52646587 None:intergenic 20.0%
!! TTTAAAAAAGAGTTACTCAT+AGG + chr3_4:52646610-52646629 Msa0506370:intron 20.0%
!! TTAAAAAAGAGTTACTCATA+GGG + chr3_4:52646611-52646630 Msa0506370:intron 20.0%
!! TAAATTGGCATATATTGTTA+AGG + chr3_4:52647098-52647117 Msa0506370:three_prime_UTR 20.0%
!!! TCTTTTCATTTAATCAAAAG+AGG - chr3_4:52647209-52647228 None:intergenic 20.0%
!!! TGAAAAATGTATTATTGGTT+AGG + chr3_4:52647229-52647248 Msa0506370:three_prime_UTR 20.0%
! TTTCCATTATGAATCAAAAC+CGG - chr3_4:52645077-52645096 None:intergenic 25.0%
! TTAAGCATTATGAATTCAGT+AGG - chr3_4:52645318-52645337 None:intergenic 25.0%
!! ATTTTCACTAAATGTGTGTT+TGG + chr3_4:52645412-52645431 Msa0506370:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - chr3_4:52645545-52645564 None:intergenic 25.0%
!! AGTTCAAGGAAAATTTTAGA+GGG - chr3_4:52645575-52645594 None:intergenic 25.0%
!! AAGTTCAAGGAAAATTTTAG+AGG - chr3_4:52645576-52645595 None:intergenic 25.0%
!! AAATTTTCAATCACTACCTT+TGG - chr3_4:52645902-52645921 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+CGG + chr3_4:52645935-52645954 Msa0506370:intron 25.0%
!! CATTGGGTTAAATATGTTTT+TGG - chr3_4:52645993-52646012 None:intergenic 25.0%
!! CTTTTACATGAATAAAAGGA+CGG - chr3_4:52646183-52646202 None:intergenic 25.0%
!! AACTACAAATATTAGCTTCA+CGG + chr3_4:52646279-52646298 Msa0506370:intron 25.0%
! TTGAATGGTATAATGTGTTA+AGG - chr3_4:52646336-52646355 None:intergenic 25.0%
!!! GATATAGTATTGACTTTGAA+TGG - chr3_4:52646351-52646370 None:intergenic 25.0%
!!! TGTTTGATTTCAATTTTGGT+GGG - chr3_4:52646392-52646411 None:intergenic 25.0%
!!! TTGTTTGATTTCAATTTTGG+TGG - chr3_4:52646393-52646412 None:intergenic 25.0%
!! ATAAGCCATAAAGTCAATTT+TGG + chr3_4:52646560-52646579 Msa0506370:intron 25.0%
! GGTAAAAAGAAGTTTATAGA+AGG + chr3_4:52646726-52646745 Msa0506370:CDS 25.0%
!! TTTTACACTTACGAGATATA+TGG + chr3_4:52646846-52646865 Msa0506370:CDS 25.0%
! TTTACACTTACGAGATATAT+GGG + chr3_4:52646847-52646866 Msa0506370:CDS 25.0%
TTTAGATCATTGTGGTGTTT+GGG - chr3_4:52644867-52644886 None:intergenic 30.0%
TTAGATGGTTTAGATCATTG+TGG - chr3_4:52644875-52644894 None:intergenic 30.0%
!!! TGTTTTGACTCATTGTTAGA+TGG - chr3_4:52644890-52644909 None:intergenic 30.0%
AATGAGTCAAAACATGACTA+AGG + chr3_4:52644896-52644915 Msa0506370:exon 30.0%
AATGAGAGTGAAAATTGCTT+TGG + chr3_4:52644959-52644978 Msa0506370:CDS 30.0%
!! AAAATTGCTTTGGAAGAGAA+GGG + chr3_4:52644969-52644988 Msa0506370:CDS 30.0%
TTCCATTATGAATCAAAACC+GGG - chr3_4:52645076-52645095 None:intergenic 30.0%
TGAATTCAGTAGGTTAGATT+TGG - chr3_4:52645308-52645327 None:intergenic 30.0%
TTATAGGGACTAAAAGTTCA+AGG - chr3_4:52645589-52645608 None:intergenic 30.0%
!! TACTTTAAAATAGGGACCAA+AGG + chr3_4:52645883-52645902 Msa0506370:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr3_4:52645921-52645940 Msa0506370:intron 30.0%
TGAATATATTCTTGCAGTGT+CGG + chr3_4:52646022-52646041 Msa0506370:intron 30.0%
!! GTTTGATTTCAATTTTGGTG+GGG - chr3_4:52646391-52646410 None:intergenic 30.0%
! GTATCATGGCTTAATTTTGT+TGG + chr3_4:52646633-52646652 Msa0506370:intron 30.0%
TGTTGGATTCTAATTGATGT+AGG + chr3_4:52646650-52646669 Msa0506370:intron 30.0%
AAGTCATCTCCATCAAAATA+TGG - chr3_4:52646786-52646805 None:intergenic 30.0%
!!! TATTTTGATGGAGATGACTT+TGG + chr3_4:52646786-52646805 Msa0506370:CDS 30.0%
!! ATTTTGATGGAGATGACTTT+GGG + chr3_4:52646787-52646806 Msa0506370:CDS 30.0%
! CAAAACCATAGATTTTGTGA+GGG - chr3_4:52646962-52646981 None:intergenic 30.0%
!! AAATCTATGGTTTTGCAATG+CGG + chr3_4:52646967-52646986 Msa0506370:CDS 30.0%
! TGAATAGAGAGATTTTGTTG+CGG + chr3_4:52647010-52647029 Msa0506370:exon 30.0%
CTTTATACAAAGTTCTTCTC+CGG - chr3_4:52647048-52647067 None:intergenic 30.0%
CGTTTGATTATAAGCTAAGA+CGG + chr3_4:52647175-52647194 Msa0506370:three_prime_UTR 30.0%
GTTTAGATCATTGTGGTGTT+TGG - chr3_4:52644868-52644887 None:intergenic 35.0%
!!! GTGTGGTTTTGTTGGATTTT+TGG + chr3_4:52644922-52644941 Msa0506370:CDS 35.0%
!! GAAAATTGCTTTGGAAGAGA+AGG + chr3_4:52644968-52644987 Msa0506370:CDS 35.0%
!!! ATCCCGGTTTTGATTCATAA+TGG + chr3_4:52645071-52645090 Msa0506370:CDS 35.0%
TTGAGTACATTGATGAAGCT+TGG + chr3_4:52645123-52645142 Msa0506370:CDS 35.0%
AATGTAATCTCCCCAAAACT+TGG - chr3_4:52645198-52645217 None:intergenic 35.0%
ATTCAGTAGGTTAGATTTGG+AGG - chr3_4:52645305-52645324 None:intergenic 35.0%
!! GACGGACTAAAATGAAAAGT+TGG + chr3_4:52645953-52645972 Msa0506370:intron 35.0%
CATATATTCAACCTTGTGCT+AGG + chr3_4:52646130-52646149 Msa0506370:intron 35.0%
GTGTAAAACCAACTAGTGAA+GGG - chr3_4:52646834-52646853 None:intergenic 35.0%
AGTGTAAAACCAACTAGTGA+AGG - chr3_4:52646835-52646854 None:intergenic 35.0%
! CTCTTTTTCCATACACCTTT+TGG - chr3_4:52646916-52646935 None:intergenic 35.0%
! GCAAAACCATAGATTTTGTG+AGG - chr3_4:52646963-52646982 None:intergenic 35.0%
ATGCGGTATAAACAGAAACA+TGG + chr3_4:52646984-52647003 Msa0506370:CDS 35.0%
AAACATGACTAAGGACAGTG+TGG + chr3_4:52644905-52644924 Msa0506370:CDS 40.0%
!!! TAAGGACAGTGTGGTTTTGT+TGG + chr3_4:52644914-52644933 Msa0506370:CDS 40.0%
ACTCTCATTGCATATACGCT+TGG - chr3_4:52644948-52644967 None:intergenic 40.0%
!! TCTGCTTTTAGAGATGAACC+CGG + chr3_4:52645037-52645056 Msa0506370:CDS 40.0%
! ACCGGGATCTTTTTGTAAAC+CGG - chr3_4:52645059-52645078 None:intergenic 40.0%
GAGGGACTAAAACGAAAAGT+TGG - chr3_4:52645557-52645576 None:intergenic 40.0%
AATAAGTGAGACCTAGCACA+AGG - chr3_4:52646144-52646163 None:intergenic 40.0%
! CTTTCATGTGATTGCCACTT+GGG - chr3_4:52646521-52646540 None:intergenic 40.0%
! GAGTTACTCATAGGGTATCA+TGG + chr3_4:52646619-52646638 Msa0506370:intron 40.0%
TGTAGGTATACAGCATTCGA+AGG + chr3_4:52646667-52646686 Msa0506370:intron 40.0%
ATTCGAAGGAAGCTATGGAA+AGG + chr3_4:52646681-52646700 Msa0506370:CDS 40.0%
AAGGAAGCTATGGAAAGGAA+AGG + chr3_4:52646686-52646705 Msa0506370:CDS 40.0%
AGGAAAGGTTGAAGAACAAG+AGG + chr3_4:52646701-52646720 Msa0506370:CDS 40.0%
AAGGTTGAAGAACAAGAGGA+AGG + chr3_4:52646705-52646724 Msa0506370:CDS 40.0%
! AAGACTCTAGAAGATGAGCT+TGG + chr3_4:52646753-52646772 Msa0506370:CDS 40.0%
!! GGAGACAAGCCATATTTTGA+TGG + chr3_4:52646774-52646793 Msa0506370:CDS 40.0%
TGACTTTGGGTATGTTGATG+TGG + chr3_4:52646800-52646819 Msa0506370:CDS 40.0%
CTCTTATACCCTTCACTAGT+TGG + chr3_4:52646823-52646842 Msa0506370:CDS 40.0%
GTGTATGGAAAAAGAGAGTG+TGG + chr3_4:52646920-52646939 Msa0506370:CDS 40.0%
!! AGATTTTGTTGCGGATTGCA+AGG + chr3_4:52647019-52647038 Msa0506370:three_prime_UTR 40.0%
!! GATTTTGTTGCGGATTGCAA+GGG + chr3_4:52647020-52647039 Msa0506370:three_prime_UTR 40.0%
! CCGGGATCTTTTTGTAAACC+GGG - chr3_4:52645058-52645077 None:intergenic 45.0%
CCCGGTTTACAAAAAGATCC+CGG + chr3_4:52645055-52645074 Msa0506370:CDS 45.0%
! TGGCTTGTGATCGCTTGAAA+GGG - chr3_4:52645178-52645197 None:intergenic 45.0%
!! TTGGCTTGTGATCGCTTGAA+AGG - chr3_4:52645179-52645198 None:intergenic 45.0%
! AGCGATCACAAGCCAAGTTT+TGG + chr3_4:52645183-52645202 Msa0506370:CDS 45.0%
! GCGATCACAAGCCAAGTTTT+GGG + chr3_4:52645184-52645203 Msa0506370:CDS 45.0%
! CGATCACAAGCCAAGTTTTG+GGG + chr3_4:52645185-52645204 Msa0506370:CDS 45.0%
ATCCATACTTCAAGCCCAAG+TGG + chr3_4:52646504-52646523 Msa0506370:intron 45.0%
CCTTTCATGTGATTGCCACT+TGG - chr3_4:52646522-52646541 None:intergenic 45.0%
CCAAGTGGCAATCACATGAA+AGG + chr3_4:52646519-52646538 Msa0506370:intron 45.0%
ACAGCATTCGAAGGAAGCTA+TGG + chr3_4:52646676-52646695 Msa0506370:CDS 45.0%
AGTGTCCTAAGCTTGTAGCT+TGG + chr3_4:52646889-52646908 Msa0506370:CDS 45.0%
GTGTCCTAAGCTTGTAGCTT+GGG + chr3_4:52646890-52646909 Msa0506370:CDS 45.0%
! CCATAGATTTTGTGAGGGTG+AGG - chr3_4:52646957-52646976 None:intergenic 45.0%
CCTCACCCTCACAAAATCTA+TGG + chr3_4:52646954-52646973 Msa0506370:CDS 45.0%
!!! AAAAATCTATTTTTTTTTTT+GGG - chr3_4:52645710-52645729 None:intergenic 5.0%
!!! AAAAAATCTATTTTTTTTTT+TGG - chr3_4:52645711-52645730 None:intergenic 5.0%
!!! TAAAAAATTCTAAATTTTTT+TGG + chr3_4:52645789-52645808 Msa0506370:intron 5.0%
!!! AAAAAATTCTAAATTTTTTT+GGG + chr3_4:52645790-52645809 Msa0506370:intron 5.0%
!! TTTAAAAAAAATTATATGTT+TGG - chr3_4:52646596-52646615 None:intergenic 5.0%
GATCGCTTGAAAGGGTCAGA+GGG - chr3_4:52645170-52645189 None:intergenic 50.0%
TGATCGCTTGAAAGGGTCAG+AGG - chr3_4:52645171-52645190 None:intergenic 50.0%
!! ATTCTTGCAGTGTCGGCTCA+AGG + chr3_4:52646029-52646048 Msa0506370:intron 50.0%
!! TTCTTGCAGTGTCGGCTCAA+GGG + chr3_4:52646030-52646049 Msa0506370:intron 50.0%
!!! TGTCGGCTCAAGGGTGTTTT+AGG + chr3_4:52646039-52646058 Msa0506370:intron 50.0%
!! GGGTGTTTTAGGCTCACAGA+AGG + chr3_4:52646050-52646069 Msa0506370:intron 50.0%
! TGCCACTTGGGCTTGAAGTA+TGG - chr3_4:52646509-52646528 None:intergenic 50.0%
TTGGCCCAAGCTACAAGCTT+AGG - chr3_4:52646897-52646916 None:intergenic 50.0%
AGCTTGTAGCTTGGGCCAAA+AGG + chr3_4:52646898-52646917 Msa0506370:CDS 50.0%
! AGCTTGGGCCAAAAGGTGTA+TGG + chr3_4:52646905-52646924 Msa0506370:CDS 50.0%
GGGTCAGAGGGCAAAAGAGA+AGG - chr3_4:52645158-52645177 None:intergenic 55.0%
! GTTGCGGATTGCAAGGGAAC+CGG + chr3_4:52647026-52647045 Msa0506370:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 52644801 52647270 52644801 ID=Msa0506370;Name=Msa0506370
chr3_4 mRNA 52644801 52647270 52644801 ID=Msa0506370-mRNA-1;Parent=Msa0506370;Name=Msa0506370-mRNA-1;_AED=0.26;_eAED=0.26;_QI=96|1|1|1|1|1|2|254|224
chr3_4 exon 52644801 52645226 52644801 ID=Msa0506370-mRNA-1:exon:11477;Parent=Msa0506370-mRNA-1
chr3_4 exon 52646672 52647270 52646672 ID=Msa0506370-mRNA-1:exon:11478;Parent=Msa0506370-mRNA-1
chr3_4 five_prime_UTR 52644801 52644896 52644801 ID=Msa0506370-mRNA-1:five_prime_utr;Parent=Msa0506370-mRNA-1
chr3_4 CDS 52644897 52645226 52644897 ID=Msa0506370-mRNA-1:cds;Parent=Msa0506370-mRNA-1
chr3_4 CDS 52646672 52647016 52646672 ID=Msa0506370-mRNA-1:cds;Parent=Msa0506370-mRNA-1
chr3_4 three_prime_UTR 52647017 52647270 52647017 ID=Msa0506370-mRNA-1:three_prime_utr;Parent=Msa0506370-mRNA-1
Gene Sequence

>Msa0506370

ATGAGTCAAAACATGACTAAGGACAGTGTGGTTTTGTTGGATTTTTGGCCAAGCGTATATGCAATGAGAGTGAAAATTGCTTTGGAAGAGAAGGGAGTCTCATATGAGTGTAGACAAGAAGATTTTCAAAATAAGAGCTCTCTGCTTTTAGAGATGAACCCGGTTTACAAAAAGATCCCGGTTTTGATTCATAATGGAAAACCCATATGTGAATCACTTAATATAGTTGAGTACATTGATGAAGCTTGGAATCACAAACCTTCTCTTTTGCCCTCTGACCCTTTCAAGCGATCACAAGCCAAGTTTTGGGGAGATTACATTGACAAACATGTATACAGCATTCGAAGGAAGCTATGGAAAGGAAAGGTTGAAGAACAAGAGGAAGGTAAAAAGAAGTTTATAGAAGGCTTGAAGACTCTAGAAGATGAGCTTGGAGACAAGCCATATTTTGATGGAGATGACTTTGGGTATGTTGATGTGGCTCTTATACCCTTCACTAGTTGGTTTTACACTTACGAGATATATGGGAAATTAAGCATTGAGAAAGAGTGTCCTAAGCTTGTAGCTTGGGCCAAAAGGTGTATGGAAAAAGAGAGTGTGGTAAAGTCACTTCCTCACCCTCACAAAATCTATGGTTTTGCAATGCGGTATAAACAGAAACATGGACTTGAATAG

Protein sequence

>Msa0506370

MSQNMTKDSVVLLDFWPSVYAMRVKIALEEKGVSYECRQEDFQNKSSLLLEMNPVYKKIPVLIHNGKPICESLNIVEYIDEAWNHKPSLLPSDPFKRSQAKFWGDYIDKHVYSIRRKLWKGKVEEQEEGKKKFIEGLKTLEDELGDKPYFDGDDFGYVDVALIPFTSWFYTYEIYGKLSIEKECPKLVAWAKRCMEKESVVKSLPHPHKIYGFAMRYKQKHGLE*