AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336300 MtrunA17_Chr3g0145171 76.797 306 57 1 5 310 7 298 2.25e-174 493
Msa1336300 MtrunA17_Chr3g0145171 73.282 131 33 1 327 457 1 129 4.52e-57 192
Msa1336300 MtrunA17_Chr8g0370711 71.613 310 74 1 1 310 3 298 1.24e-165 470
Msa1336300 MtrunA17_Chr8g0370711 77.344 128 27 1 330 457 4 129 1.23e-57 194
Msa1336300 MtrunA17_Chr8g0370721 70.968 310 76 1 1 310 3 298 5.60e-162 461
Msa1336300 MtrunA17_Chr8g0370721 76.562 128 28 1 330 457 4 129 7.21e-55 186
Msa1336300 MtrunA17_Chr3g0145181 65.686 306 85 5 9 310 9 298 1.01e-135 394
Msa1336300 MtrunA17_Chr3g0145181 75.000 128 29 2 333 458 5 131 2.01e-55 188
Msa1336300 MtrunA17_Chr3g0145201 66.296 270 72 4 45 310 679 933 1.21e-115 362
Msa1336300 MtrunA17_Chr3g0145201 80.682 88 15 1 373 458 679 766 3.44e-37 145
Msa1336300 MtrunA17_Chr4g0064781 47.333 300 136 4 11 310 15 292 6.36e-92 282
Msa1336300 MtrunA17_Chr4g0064781 44.538 119 56 4 339 457 15 123 6.70e-20 90.9
Msa1336300 MtrunA17_Chr3g0087031 39.145 304 165 5 8 310 19 303 3.00e-65 214
Msa1336300 MtrunA17_Chr3g0087031 43.966 116 60 3 340 455 23 133 7.33e-20 90.9
Msa1336300 MtrunA17_Chr2g0296371 38.585 311 167 7 4 310 8 298 5.81e-62 205
Msa1336300 MtrunA17_Chr5g0420981 37.124 299 170 4 12 310 17 297 9.46e-61 202
Msa1336300 MtrunA17_Chr5g0420981 35.345 116 70 3 340 455 17 127 6.90e-12 66.6
Msa1336300 MtrunA17_Chr2g0314401 36.545 301 169 4 12 310 16 296 3.68e-59 197
Msa1336300 MtrunA17_Chr2g0314401 38.983 118 63 3 340 455 16 126 2.67e-14 73.9
Msa1336300 MtrunA17_Chr8g0365241 38.550 262 145 3 49 310 56 301 4.15e-59 198
Msa1336300 MtrunA17_Chr5g0423251 36.513 304 171 5 8 310 8 290 8.06e-59 197
Msa1336300 MtrunA17_Chr5g0423251 37.288 118 63 4 340 455 12 120 2.06e-12 68.2
Msa1336300 MtrunA17_Chr7g0232161 38.129 278 153 4 50 327 60 318 1.09e-58 196
Msa1336300 MtrunA17_Chr7g0232161 33.333 117 72 3 340 456 24 134 8.20e-12 66.2
Msa1336300 MtrunA17_Chr5g0423191 39.313 262 142 3 49 310 46 290 1.23e-58 196
Msa1336300 MtrunA17_Chr7g0242551 37.828 267 148 3 48 310 52 304 3.36e-58 195
Msa1336300 MtrunA17_Chr5g0421041 34.783 299 173 4 12 310 12 288 5.13e-57 192
Msa1336300 MtrunA17_Chr5g0421041 36.207 116 65 3 340 455 12 118 2.90e-12 67.8
Msa1336300 MtrunA17_Chr2g0314391 36.455 299 172 3 12 310 35 315 3.55e-56 191
Msa1336300 MtrunA17_Chr2g0314391 38.983 118 63 3 340 455 35 145 2.09e-13 71.6
Msa1336300 MtrunA17_Chr7g0239101 39.080 261 142 3 50 310 55 298 3.61e-56 190
Msa1336300 MtrunA17_Chr7g0239101 33.333 117 72 3 340 456 19 129 3.79e-11 64.3
Msa1336300 MtrunA17_Chr7g0239111 39.080 261 142 3 50 310 55 298 5.35e-56 189
Msa1336300 MtrunA17_Chr7g0239111 34.746 118 71 3 340 457 19 130 4.80e-13 70.5
Msa1336300 MtrunA17_Chr8g0375601 36.120 299 175 3 13 310 11 294 8.55e-56 189
Msa1336300 MtrunA17_Chr8g0375601 38.793 116 68 2 341 455 11 124 3.91e-15 76.6
Msa1336300 MtrunA17_Chr5g0423221 35.452 299 174 3 12 310 36 315 1.17e-55 189
Msa1336300 MtrunA17_Chr2g0314381 35.099 302 173 6 12 310 41 322 1.40e-55 189
Msa1336300 MtrunA17_Chr2g0314381 39.496 119 62 4 340 455 41 152 7.20e-13 70.1
Msa1336300 MtrunA17_Chr5g0421011 36.667 270 154 3 41 310 38 290 2.20e-55 187
Msa1336300 MtrunA17_Chr5g0420951 36.424 302 168 5 12 310 17 297 2.25e-55 188
Msa1336300 MtrunA17_Chr5g0421101 36.120 299 171 4 12 310 12 290 4.35e-55 187
Msa1336300 MtrunA17_Chr5g0420941 35.082 305 174 5 8 310 6 288 1.07e-53 183
Msa1336300 MtrunA17_Chr7g0239121 36.641 262 148 4 50 310 51 295 1.35e-53 183
Msa1336300 MtrunA17_Chr7g0239121 32.692 104 64 3 352 455 27 124 4.38e-11 64.3
Msa1336300 MtrunA17_Chr1g0162191 37.786 262 148 2 49 310 46 292 3.01e-53 182
Msa1336300 MtrunA17_Chr5g0423201 33.866 313 182 6 1 310 1 291 4.72e-53 182
Msa1336300 MtrunA17_Chr8g0375671 34.551 301 177 4 12 310 17 299 4.97e-53 182
Msa1336300 MtrunA17_Chr8g0375671 37.879 132 73 4 327 456 6 130 2.04e-14 74.7
Msa1336300 MtrunA17_Chr4g0006371 33.876 307 175 4 8 310 30 312 5.98e-53 182
Msa1336300 MtrunA17_Chr5g0437181 33.555 301 181 4 13 310 14 298 3.06e-52 179
Msa1336300 MtrunA17_Chr5g0420901 34.314 306 177 5 7 310 6 289 3.09e-52 179
Msa1336300 MtrunA17_Chr3g0113641 34.815 270 159 3 44 310 44 299 3.83e-52 179
Msa1336300 MtrunA17_Chr3g0113641 32.203 118 74 3 341 456 15 128 4.95e-11 64.3
Msa1336300 MtrunA17_Chr7g0239821 36.641 262 149 3 49 310 63 307 4.93e-52 179
Msa1336300 MtrunA17_Chr5g0421091 36.066 305 172 4 8 310 6 289 4.96e-52 179
Msa1336300 MtrunA17_Chr8g0375571 33.007 306 183 5 8 310 6 292 6.07e-51 176
Msa1336300 MtrunA17_Chr8g0375571 35.593 118 69 3 340 455 10 122 6.20e-12 67.0
Msa1336300 MtrunA17_Chr8g0375681 39.648 227 122 2 84 310 16 227 1.17e-49 171
Msa1336300 MtrunA17_Chr8g0375701 36.226 265 143 5 50 310 55 297 8.19e-49 171
Msa1336300 MtrunA17_Chr7g0239071 37.826 230 128 2 81 310 29 243 4.24e-48 167
Msa1336300 MtrunA17_Chr2g0314371 34.797 296 148 8 12 275 16 298 5.38e-48 167
Msa1336300 MtrunA17_Chr2g0314371 40.336 119 61 4 340 455 16 127 2.87e-12 67.8
Msa1336300 MtrunA17_Chr3g0128001 36.502 263 146 5 49 310 37 279 4.19e-47 165
Msa1336300 MtrunA17_Chr5g0423211 31.949 313 190 5 1 310 1 293 4.00e-46 163
Msa1336300 MtrunA17_Chr3g0114861 34.818 247 141 5 68 310 53 283 6.39e-46 162
Msa1336300 MtrunA17_Chr5g0424201 33.083 266 156 6 48 310 42 288 5.60e-45 160
Msa1336300 MtrunA17_Chr5g0424201 37.037 81 47 2 376 456 42 118 8.12e-11 63.2
Msa1336300 MtrunA17_Chr5g0398291 30.097 309 193 6 10 310 5 298 5.62e-44 157
Msa1336300 MtrunA17_Chr1g0179801 31.833 311 183 9 11 311 25 316 6.32e-43 155
Msa1336300 MtrunA17_Chr3g0114871 33.476 233 147 4 46 275 38 265 4.05e-42 150
Msa1336300 MtrunA17_Chr5g0424211 33.083 266 154 6 50 310 42 288 1.68e-41 150
Msa1336300 MtrunA17_Chr8g0345831 35.115 262 151 6 50 310 42 285 4.35e-41 149
Msa1336300 MtrunA17_Chr5g0420721 36.765 204 114 2 107 310 4 192 8.69e-41 146
Msa1336300 MtrunA17_Chr3g0102041 29.245 318 194 7 49 359 38 331 9.56e-40 146
Msa1336300 MtrunA17_Chr4g0064771 38.117 223 72 3 88 310 1 157 3.79e-39 140
Msa1336300 MtrunA17_Chr8g0371931 32.197 264 160 5 50 310 39 286 8.96e-39 144
Msa1336300 MtrunA17_Chr3g0109041 31.507 292 170 9 50 328 42 316 3.07e-38 142
Msa1336300 MtrunA17_Chr7g0265221 31.429 280 161 7 44 310 61 322 1.58e-37 141
Msa1336300 MtrunA17_Chr5g0405411 29.966 297 186 6 17 310 9 286 1.77e-37 140
Msa1336300 MtrunA17_Chr7g0239091 34.351 262 145 5 49 310 159 393 5.22e-37 141
Msa1336300 MtrunA17_Chr5g0426891 32.573 307 177 10 12 312 3 285 1.51e-36 137
Msa1336300 MtrunA17_Chr6g0474391 31.159 276 161 6 47 311 61 318 1.92e-36 138
Msa1336300 MtrunA17_Chr6g0455481 32.155 283 160 8 35 310 27 284 3.27e-36 136
Msa1336300 MtrunA17_Chr5g0412671 33.333 261 153 7 50 305 38 282 7.03e-36 135
Msa1336300 MtrunA17_Chr3g0126741 30.827 266 159 7 50 310 59 304 8.13e-36 135
Msa1336300 MtrunA17_Chr2g0332191 30.034 293 172 9 50 332 52 321 1.27e-35 135
Msa1336300 MtrunA17_Chr5g0412651 32.967 273 148 8 50 310 38 287 1.52e-35 134
Msa1336300 MtrunA17_Chr8g0371921 31.557 244 149 4 69 310 59 286 4.53e-35 134
Msa1336300 MtrunA17_Chr3g0125201 31.343 268 158 5 48 311 1 246 1.46e-34 131
Msa1336300 MtrunA17_Chr1g0204181 29.562 274 168 6 47 311 56 313 8.07e-34 130
Msa1336300 MtrunA17_Chr7g0250511 30.038 263 164 6 50 310 49 293 1.77e-33 129
Msa1336300 MtrunA17_Chr3g0121141 31.321 265 156 8 49 310 3 244 3.27e-33 127
Msa1336300 MtrunA17_Chr4g0045451 34.164 281 147 10 50 310 26 288 3.91e-33 128
Msa1336300 MtrunA17_Chr4g0011311 31.356 236 154 5 44 277 61 290 4.24e-33 127
Msa1336300 MtrunA17_Chr2g0289341 29.811 265 160 8 49 310 3 244 5.44e-33 127
Msa1336300 MtrunA17_Chr5g0412681 31.698 265 154 5 50 310 33 274 1.68e-32 126
Msa1336300 MtrunA17_Chr4g0045471 34.276 283 145 11 50 310 26 289 2.07e-32 126
Msa1336300 MtrunA17_Chr1g0184161 32.700 263 156 7 50 310 38 281 3.16e-32 125
Msa1336300 MtrunA17_Chr8g0351101 30.882 272 164 5 48 311 52 307 3.34e-32 126
Msa1336300 MtrunA17_Chr1g0187831 30.385 260 159 7 46 303 66 305 3.71e-32 126
Msa1336300 MtrunA17_Chr2g0311681 32.824 262 154 6 44 303 57 298 9.23e-32 125
Msa1336300 MtrunA17_Chr4g0045441 33.808 281 148 11 50 310 26 288 1.29e-31 124
Msa1336300 MtrunA17_Chr3g0093761 32.899 307 173 10 9 310 17 295 1.54e-31 124
Msa1336300 MtrunA17_Chr2g0311711 31.818 264 156 7 44 303 59 302 4.22e-31 123
Msa1336300 MtrunA17_Chr2g0311921 29.730 259 159 6 50 305 54 292 6.23e-31 122
Msa1336300 MtrunA17_Chr7g0235951 29.577 284 169 8 45 322 62 320 1.01e-30 122
Msa1336300 MtrunA17_Chr3g0093741 32.362 309 173 12 9 310 17 296 1.38e-30 121
Msa1336300 MtrunA17_Chr2g0311761 31.716 268 152 8 50 310 68 311 1.45e-30 121
Msa1336300 MtrunA17_Chr5g0439011 29.323 266 162 8 48 310 3 245 1.84e-30 120
Msa1336300 MtrunA17_Chr1g0184101 30.479 292 172 8 25 310 15 281 2.26e-30 120
Msa1336300 MtrunA17_Chr1g0184111 30.418 263 163 6 50 310 37 281 3.28e-30 120
Msa1336300 MtrunA17_Chr1g0184121 32.331 266 154 8 50 310 37 281 3.49e-30 120
Msa1336300 MtrunA17_Chr4g0066121 29.740 269 157 8 50 310 60 304 5.92e-30 119
Msa1336300 MtrunA17_Chr8g0336751 32.046 259 152 7 50 305 94 331 7.33e-30 120
Msa1336300 MtrunA17_Chr2g0319491 29.730 296 172 10 24 310 5 273 7.47e-30 118
Msa1336300 MtrunA17_Chr8g0336861 29.368 269 158 8 50 310 60 304 9.61e-30 119
Msa1336300 MtrunA17_Chr1g0162321 31.690 284 154 9 49 310 68 333 1.06e-29 119
Msa1336300 MtrunA17_Chr1g0162361 33.214 280 142 10 50 310 27 280 1.49e-29 118
Msa1336300 MtrunA17_Chr2g0311741 29.008 262 164 6 44 303 21 262 1.58e-29 117
Msa1336300 MtrunA17_Chr1g0162351 32.042 284 153 9 49 310 68 333 1.65e-29 119
Msa1336300 MtrunA17_Chr2g0311701 30.112 269 166 6 44 310 63 311 1.85e-29 118
Msa1336300 MtrunA17_Chr3g0093751 33.010 309 171 12 9 310 17 296 2.07e-29 118
Msa1336300 MtrunA17_Chr7g0220011 30.798 263 159 6 50 310 39 280 2.42e-29 117
Msa1336300 MtrunA17_Chr8g0336851 28.358 268 161 7 50 310 60 303 3.82e-29 117
Msa1336300 MtrunA17_Chr1g0187821 29.278 263 162 8 44 303 61 302 4.46e-29 117
Msa1336300 MtrunA17_Chr8g0362741 34.975 203 124 5 76 277 80 275 5.41e-29 115
Msa1336300 MtrunA17_Chr8g0364471 27.715 267 171 6 46 310 63 309 7.80e-29 116
Msa1336300 MtrunA17_Chr8g0336781 30.651 261 155 8 50 305 95 334 8.92e-29 117
Msa1336300 MtrunA17_Chr2g0311831 30.502 259 156 7 50 305 68 305 1.18e-28 116
Msa1336300 MtrunA17_Chr1g0184151 30.038 263 163 6 50 310 38 281 1.52e-28 115
Msa1336300 MtrunA17_Chr7g0225881 27.839 273 170 8 43 312 60 308 1.62e-28 115
Msa1336300 MtrunA17_Chr2g0311691 30.566 265 162 6 48 310 61 305 1.99e-28 115
Msa1336300 MtrunA17_Chr7g0220001 28.165 316 188 9 50 353 41 329 2.11e-28 114
Msa1336300 MtrunA17_Chr6g0472861 28.102 274 168 8 44 312 64 313 2.32e-28 115
Msa1336300 MtrunA17_Chr7g0266651 29.603 277 160 8 44 312 53 302 3.68e-28 114
Msa1336300 MtrunA17_Chr4g0050031 28.571 266 165 6 50 310 62 307 4.66e-28 114
Msa1336300 MtrunA17_Chr1g0167911 29.389 262 154 8 50 305 54 290 4.79e-28 114
Msa1336300 MtrunA17_Chr4g0045411 30.556 288 164 10 38 310 21 287 5.67e-28 114
Msa1336300 MtrunA17_Chr4g0055591 30.196 255 153 6 50 303 61 291 7.84e-28 114
Msa1336300 MtrunA17_Chr8g0354261 28.676 272 168 7 44 310 62 312 8.55e-28 114
Msa1336300 MtrunA17_Chr8g0336761 28.731 268 160 7 50 310 60 303 1.14e-27 113
Msa1336300 MtrunA17_Chr7g0265351 31.752 274 159 9 41 310 30 279 2.71e-27 111
Msa1336300 MtrunA17_Chr8g0354241 28.571 266 162 7 44 303 62 305 4.07e-27 112
Msa1336300 MtrunA17_Chr1g0184241 28.859 298 166 10 25 310 46 309 6.02e-27 111
Msa1336300 MtrunA17_Chr3g0125421 30.976 297 172 10 25 311 17 290 1.00e-26 110
Msa1336300 MtrunA17_Chr2g0285931 29.670 273 155 10 50 310 28 275 1.10e-26 110
Msa1336300 MtrunA17_Chr1g0167961 30.224 268 155 8 50 310 69 311 1.19e-26 110
Msa1336300 MtrunA17_Chr1g0187811 27.757 263 166 7 44 303 182 423 1.39e-26 112
Msa1336300 MtrunA17_Chr5g0420881 48.000 100 38 1 211 310 1 86 1.73e-26 104
Msa1336300 MtrunA17_Chr8g0336631 27.820 266 166 7 50 310 60 304 3.09e-26 109
Msa1336300 MtrunA17_Chr8g0358941 30.545 275 151 12 50 310 27 275 4.31e-26 108
Msa1336300 MtrunA17_Chr8g0348081 27.692 260 163 7 50 305 60 298 5.01e-26 108
Msa1336300 MtrunA17_Chr1g0161081 29.167 264 164 6 50 312 73 314 2.61e-25 106
Msa1336300 MtrunA17_Chr2g0311631 27.778 270 165 8 50 310 55 303 3.10e-25 106
Msa1336300 MtrunA17_Chr8g0384461 27.273 308 184 11 17 311 19 299 5.81e-25 105
Msa1336300 MtrunA17_Chr1g0167951 28.464 267 160 7 50 310 53 294 6.27e-25 105
Msa1336300 MtrunA17_Chr3g0130391 27.778 288 171 7 39 311 55 320 6.48e-25 105
Msa1336300 MtrunA17_Chr4g0045431 32.432 259 140 9 68 310 49 288 1.08e-24 104
Msa1336300 MtrunA17_Chr2g0311861 30.303 264 140 9 50 310 64 286 1.87e-24 103
Msa1336300 MtrunA17_Chr1g0161041 28.528 326 178 11 18 312 36 337 2.78e-24 104
Msa1336300 MtrunA17_Chr1g0161111 30.303 264 161 6 50 312 132 373 4.32e-24 103
Msa1336300 MtrunA17_Chr7g0247991 28.947 266 159 7 44 303 61 302 5.55e-24 103
Msa1336300 MtrunA17_Chr4g0045461 31.900 279 155 10 50 310 26 287 5.57e-24 102
Msa1336300 MtrunA17_Chr7g0235981 27.500 240 148 6 76 310 45 263 1.08e-23 101
Msa1336300 MtrunA17_Chr6g0488511 26.113 337 197 10 48 374 1 295 1.26e-23 100
Msa1336300 MtrunA17_Chr7g0236011 29.054 296 177 9 44 333 61 329 1.87e-23 101
Msa1336300 MtrunA17_Chr1g0148771 27.170 265 163 8 50 310 63 301 2.58e-23 100
Msa1336300 MtrunA17_Chr2g0313111 29.851 268 154 11 50 310 28 268 3.56e-23 99.8
Msa1336300 MtrunA17_Chr3g0092531 31.111 270 150 9 50 310 6 248 4.63e-23 99.4
Msa1336300 MtrunA17_Chr8g0335411 27.863 262 167 6 44 303 61 302 7.25e-23 99.8
Msa1336300 MtrunA17_Chr1g0191201 26.333 300 182 8 25 311 34 307 8.27e-23 99.8
Msa1336300 MtrunA17_Chr5g0394071 36.667 150 69 4 166 310 3 131 2.59e-22 94.0
Msa1336300 MtrunA17_Chr8g0375661 32.335 167 107 3 1 165 7 169 2.91e-22 93.6
Msa1336300 MtrunA17_Chr8g0375661 39.496 119 65 3 340 456 17 130 5.30e-16 75.9
Msa1336300 MtrunA17_Chr4g0053251 27.719 285 162 9 50 310 8 272 5.14e-22 96.7
Msa1336300 MtrunA17_Chr8g0364171 39.823 113 66 2 165 277 18 128 6.84e-22 91.7
Msa1336300 MtrunA17_Chr8g0384481 29.137 278 173 9 41 311 50 310 7.85e-22 96.7
Msa1336300 MtrunA17_Chr8g0375641 32.692 156 100 2 12 165 17 169 2.47e-21 91.3
Msa1336300 MtrunA17_Chr8g0375641 37.879 132 73 4 327 456 6 130 2.69e-15 73.9
Msa1336300 MtrunA17_Chr4g0075471 40.000 120 53 3 196 310 9 114 5.78e-21 89.7
Msa1336300 MtrunA17_Chr4g0066991 27.308 260 149 6 45 303 62 282 5.52e-20 90.9
Msa1336300 MtrunA17_Chr7g0233661 39.024 123 54 3 188 310 4 105 7.67e-20 86.3
Msa1336300 MtrunA17_Chr6g0486831 29.630 270 150 12 66 312 33 285 1.91e-19 89.4
Msa1336300 MtrunA17_Chr4g0052251 26.400 250 156 8 71 310 43 274 1.74e-18 86.3
Msa1336300 MtrunA17_Chr3g0105281 27.239 268 160 6 50 310 34 273 1.79e-18 86.3
Msa1336300 MtrunA17_Chr3g0126761 31.293 147 85 3 165 310 44 175 2.35e-18 84.0
Msa1336300 MtrunA17_Chr1g0170631 32.867 143 77 4 170 310 8 133 5.96e-18 82.0
Msa1336300 MtrunA17_Chr8g0375581 47.619 63 33 0 209 271 23 85 1.85e-17 77.0
Msa1336300 MtrunA17_Chr1g0167931 27.652 264 128 9 50 310 54 257 3.06e-17 82.4
Msa1336300 MtrunA17_Chr5g0420891 30.247 162 104 3 6 165 5 159 2.00e-16 76.6
Msa1336300 MtrunA17_Chr4g0068891 26.429 280 170 9 39 310 12 263 3.76e-16 79.3
Msa1336300 MtrunA17_Chr8g0375591 38.843 121 62 4 340 455 10 123 4.46e-15 72.0
Msa1336300 MtrunA17_Chr8g0375591 34.586 133 77 3 5 132 3 130 1.59e-14 70.5
Msa1336300 MtrunA17_Chr8g0389941 28.137 263 151 11 71 312 51 296 8.12e-15 75.5
Msa1336300 MtrunA17_Chr2g0319521 34.211 114 73 2 164 277 15 126 9.45e-15 71.2
Msa1336300 MtrunA17_Chr8g0336831 26.984 189 129 5 50 234 60 243 9.72e-15 73.9
Msa1336300 MtrunA17_Chr4g0037611 36.697 109 53 3 203 310 28 121 1.64e-14 71.6
Msa1336300 MtrunA17_Chr8g0348951 27.306 271 165 9 48 310 8 254 9.18e-14 72.0
Msa1336300 MtrunA17_Chr4g0004061 25.000 272 180 8 44 310 3 255 2.22e-13 70.9
Msa1336300 MtrunA17_Chr4g0009541 28.505 214 131 8 101 310 61 256 9.23e-13 68.9
Msa1336300 MtrunA17_Chr7g0247741 28.253 269 160 11 44 304 5 248 1.03e-12 68.9
Msa1336300 MtrunA17_Chr2g0311611 46.479 71 30 2 212 275 2 71 2.36e-12 62.4
Msa1336300 MtrunA17_Chr1g0167921 31.405 121 73 4 161 274 39 156 2.55e-12 65.1
Msa1336300 MtrunA17_Chr8g0336801 32.692 104 55 2 207 310 7 95 3.80e-12 64.3
Msa1336300 MtrunA17_Chr7g0256741 26.316 266 173 6 50 310 10 257 1.29e-11 65.5
Msa1336300 MtrunA17_Chr4g0055871 26.978 278 164 13 46 310 5 256 1.86e-11 65.1
Msa1336300 MtrunA17_Chr3g0138351 27.778 216 129 10 101 310 64 258 1.93e-11 65.1
Msa1336300 MtrunA17_Chr7g0219991 34.615 104 66 1 167 270 250 351 2.05e-11 65.1
Msa1336300 MtrunA17_Chr3g0092581 33.824 136 74 3 175 310 1 120 2.36e-11 62.8
Msa1336300 MtrunA17_Chr4g0055911 24.825 286 165 12 46 310 5 261 4.76e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336300 AT1G49390.1 47.841 301 141 3 11 310 7 292 1.43e-94 289
Msa1336300 AT1G49390.1 45.000 120 62 3 339 457 7 123 2.47e-24 103
Msa1336300 AT5G20400.1 48.505 301 139 3 11 310 7 292 4.67e-93 285
Msa1336300 AT5G20400.1 49.167 120 57 3 339 457 7 123 2.94e-26 109
Msa1336300 AT5G54000.2 46.885 305 139 5 11 310 7 293 1.18e-91 282
Msa1336300 AT5G54000.2 42.623 122 63 5 339 457 7 124 1.00e-18 87.8
Msa1336300 AT5G20550.1 47.712 306 135 6 11 310 7 293 1.30e-91 282
Msa1336300 AT5G20550.1 44.355 124 57 5 339 457 7 123 1.43e-21 95.9
Msa1336300 AT1G49390.2 53.304 227 92 1 84 310 1 213 1.20e-82 256
Msa1336300 AT5G54000.1 51.542 227 96 1 84 310 1 213 3.55e-81 252
Msa1336300 AT3G21420.1 41.479 311 163 5 4 310 8 303 3.80e-63 209
Msa1336300 AT1G17020.1 37.594 266 147 3 48 310 51 300 4.81e-60 201
Msa1336300 AT1G17020.1 43.210 81 44 1 376 456 51 129 2.00e-14 75.1
Msa1336300 AT1G17010.1 35.831 307 175 4 8 310 12 300 2.15e-59 199
Msa1336300 AT4G25300.1 37.970 266 143 3 49 310 51 298 4.78e-59 198
Msa1336300 AT4G25300.1 43.038 79 43 1 377 455 51 127 8.05e-14 73.2
Msa1336300 AT2G38240.1 35.688 269 154 3 44 310 42 293 4.72e-57 192
Msa1336300 AT2G38240.1 35.294 119 67 4 340 456 11 121 9.09e-12 66.6
Msa1336300 AT4G25310.1 37.582 306 159 8 12 310 15 295 5.52e-56 189
Msa1336300 AT1G78550.1 36.700 297 160 5 19 310 25 298 2.28e-55 188
Msa1336300 AT1G78550.1 44.444 81 43 1 378 458 53 131 3.64e-13 71.2
Msa1336300 AT5G05600.1 34.602 289 168 4 49 330 61 335 1.91e-53 183
Msa1336300 AT3G55970.1 36.466 266 150 5 50 310 52 303 2.56e-53 183
Msa1336300 AT3G11180.2 35.254 295 168 5 43 331 88 365 1.88e-51 179
Msa1336300 AT3G11180.1 35.254 295 168 5 43 331 88 365 2.26e-51 179
Msa1336300 AT3G55970.2 37.229 231 140 4 50 275 52 282 1.07e-48 169
Msa1336300 AT5G05600.2 36.522 230 143 2 49 275 61 290 1.29e-48 168
Msa1336300 AT1G78550.2 36.975 238 126 4 77 310 3 220 4.95e-47 164
Msa1336300 AT5G08640.2 32.197 264 157 5 50 310 43 287 6.43e-44 157
Msa1336300 AT5G08640.1 32.197 264 157 5 50 310 43 287 6.43e-44 157
Msa1336300 AT2G44800.1 34.701 268 153 7 46 310 48 296 7.94e-44 157
Msa1336300 AT4G10500.1 34.733 262 152 6 50 310 44 287 1.68e-43 156
Msa1336300 AT4G22880.1 31.343 268 163 5 49 310 46 298 1.10e-42 154
Msa1336300 AT4G22880.2 31.343 268 163 5 49 310 46 298 1.10e-42 154
Msa1336300 AT4G22880.3 31.343 268 163 5 49 310 46 298 1.10e-42 154
Msa1336300 AT5G24530.1 34.351 262 151 5 50 310 38 279 3.89e-42 152
Msa1336300 AT2G36690.2 32.248 307 181 7 11 310 19 305 4.16e-42 153
Msa1336300 AT2G36690.1 32.248 307 181 7 11 310 19 305 4.16e-42 153
Msa1336300 AT4G16330.2 33.003 303 172 9 50 343 67 347 3.91e-41 150
Msa1336300 AT3G60290.1 32.836 268 158 7 46 310 48 296 2.13e-40 148
Msa1336300 AT4G10490.1 33.460 263 154 7 50 310 42 285 3.10e-38 142
Msa1336300 AT5G63595.1 30.072 276 153 6 35 310 12 247 5.29e-38 140
Msa1336300 AT3G19000.1 33.444 302 158 10 25 310 16 290 1.19e-37 141
Msa1336300 AT1G55290.1 34.444 270 150 7 45 310 57 303 2.80e-37 140
Msa1336300 AT5G63600.2 30.451 266 162 6 46 310 29 272 1.09e-36 137
Msa1336300 AT5G63590.1 30.597 268 164 5 46 310 10 258 1.52e-36 137
Msa1336300 AT4G25310.2 33.444 302 149 9 12 310 15 267 3.05e-36 136
Msa1336300 AT5G63600.1 30.075 266 162 6 46 310 29 271 4.40e-36 136
Msa1336300 AT1G60980.1 30.797 276 163 6 48 311 55 314 6.56e-36 137
Msa1336300 AT5G63580.2 32.627 236 149 5 43 275 12 240 8.00e-36 133
Msa1336300 AT3G19000.2 34.201 269 148 9 25 277 16 271 9.74e-36 134
Msa1336300 AT5G63580.1 32.479 234 148 5 43 273 12 238 1.85e-35 132
Msa1336300 AT5G43935.1 30.224 268 138 8 50 310 19 244 2.18e-35 133
Msa1336300 AT4G16330.1 32.941 255 146 7 96 341 1 239 2.67e-35 132
Msa1336300 AT3G51240.1 29.924 264 166 5 50 310 38 285 3.07e-35 134
Msa1336300 AT4G25420.1 30.403 273 166 5 47 311 58 314 2.08e-34 132
Msa1336300 AT3G19010.1 34.783 276 147 9 50 310 28 285 2.33e-34 132
Msa1336300 AT3G19010.4 34.783 276 147 9 50 310 28 285 2.33e-34 132
Msa1336300 AT5G51810.1 30.515 272 163 5 47 311 60 312 6.46e-34 131
Msa1336300 AT3G13610.1 33.210 271 154 7 44 310 56 303 7.00e-34 130
Msa1336300 AT5G07200.1 29.904 311 189 7 48 348 56 347 9.42e-34 130
Msa1336300 AT5G07480.1 29.964 277 153 7 50 310 44 295 1.07e-33 130
Msa1336300 AT2G30830.1 30.345 290 173 7 46 329 50 316 1.83e-33 129
Msa1336300 AT1G62380.1 30.112 269 162 7 45 310 2 247 2.43e-33 128
Msa1336300 AT1G05010.1 31.452 248 145 5 68 312 21 246 3.39e-33 128
Msa1336300 AT1G12010.1 30.855 269 160 8 45 310 2 247 4.41e-33 127
Msa1336300 AT3G19010.2 36.066 244 137 8 50 278 28 267 1.09e-32 126
Msa1336300 AT3G19010.2 41.026 78 42 1 378 455 28 101 8.64e-11 63.2
Msa1336300 AT4G21200.1 29.967 307 167 10 24 310 3 281 2.08e-32 126
Msa1336300 AT1G06620.1 31.111 270 164 6 43 310 55 304 1.02e-31 125
Msa1336300 AT1G06620.2 32.340 235 151 5 43 275 55 283 1.88e-31 122
Msa1336300 AT5G43450.1 29.740 269 159 7 47 310 58 301 3.73e-31 123
Msa1336300 AT1G44090.1 31.673 281 164 9 41 311 54 316 6.69e-31 123
Msa1336300 AT5G43440.1 28.889 270 162 7 47 310 59 304 9.52e-31 122
Msa1336300 AT5G43440.2 30.303 231 145 6 47 271 59 279 1.25e-30 120
Msa1336300 AT5G43450.2 31.416 226 147 5 47 271 58 276 1.30e-30 120
Msa1336300 AT3G61400.1 31.890 254 148 6 63 312 79 311 9.54e-30 119
Msa1336300 AT1G03410.2 30.037 273 168 6 43 312 50 302 1.23e-29 119
Msa1336300 AT1G03410.1 30.037 273 168 6 43 312 87 339 1.37e-29 119
Msa1336300 AT1G77330.1 29.643 280 149 8 48 311 1 248 1.67e-29 117
Msa1336300 AT3G51240.2 32.243 214 127 4 99 310 4 201 1.69e-29 116
Msa1336300 AT4G25420.2 29.958 237 156 4 47 275 58 292 2.88e-29 116
Msa1336300 AT3G12900.1 30.859 256 147 10 53 302 59 290 3.39e-29 117
Msa1336300 AT1G15550.1 31.206 282 164 8 35 310 42 299 3.69e-29 117
Msa1336300 AT1G78440.1 29.371 286 162 10 38 310 6 264 6.11e-29 116
Msa1336300 AT1G06650.1 29.870 231 151 6 50 276 64 287 6.52e-29 116
Msa1336300 AT1G06650.2 28.090 267 167 7 50 312 64 309 2.12e-28 115
Msa1336300 AT1G06640.1 28.832 274 156 10 50 312 64 309 8.20e-28 114
Msa1336300 AT1G06645.1 27.437 277 171 7 43 312 66 319 1.26e-27 114
Msa1336300 AT3G61400.2 32.719 217 135 5 63 275 79 288 1.33e-27 112
Msa1336300 AT1G06640.2 30.544 239 141 9 50 277 64 288 1.44e-27 112
Msa1336300 AT5G51810.2 29.237 236 155 4 47 275 60 290 2.20e-27 111
Msa1336300 AT1G06640.3 30.901 233 136 9 50 271 64 282 3.73e-27 110
Msa1336300 AT3G19010.3 32.609 276 123 10 50 310 28 255 4.01e-27 111
Msa1336300 AT3G19010.3 41.026 78 42 1 378 455 28 101 8.92e-11 63.5
Msa1336300 AT4G25300.2 37.748 151 72 3 164 310 72 204 1.10e-26 108
Msa1336300 AT2G30840.1 27.208 283 182 7 41 319 48 310 1.47e-26 110
Msa1336300 AT5G59540.1 28.417 278 161 11 44 310 55 305 2.97e-26 109
Msa1336300 AT5G59540.2 29.218 243 148 9 44 275 55 284 3.02e-26 108
Msa1336300 AT1G80340.1 30.769 273 159 8 44 310 44 292 3.42e-26 109
Msa1336300 AT5G59530.1 28.102 274 168 9 44 310 52 303 5.80e-26 108
Msa1336300 AT1G80330.1 27.778 270 162 8 50 310 49 294 4.79e-25 106
Msa1336300 AT2G30840.2 28.151 238 161 6 41 274 48 279 7.31e-25 104
Msa1336300 AT2G25450.1 27.574 272 175 6 43 312 48 299 7.85e-25 105
Msa1336300 AT2G30840.3 28.151 238 161 6 41 274 48 279 1.74e-24 104
Msa1336300 AT1G04350.1 26.482 253 171 8 44 292 52 293 5.48e-24 103
Msa1336300 AT4G21690.1 26.523 279 172 5 43 310 40 296 6.39e-23 100
Msa1336300 AT5G07480.2 31.638 177 98 4 141 310 26 186 8.45e-23 97.4
Msa1336300 AT1G04380.1 27.037 270 166 7 46 310 41 284 8.96e-23 99.4
Msa1336300 AT1G04380.2 27.897 233 155 6 46 275 41 263 1.52e-22 97.4
Msa1336300 AT5G12270.1 27.574 272 159 7 50 310 56 300 1.59e-22 99.0
Msa1336300 AT1G30040.1 28.881 277 164 10 42 310 23 274 3.97e-22 97.4
Msa1336300 AT2G19590.1 26.592 267 167 8 41 303 2 243 4.08e-22 97.1
Msa1336300 AT1G03400.1 27.899 276 159 8 43 311 49 291 1.51e-21 95.9
Msa1336300 AT1G03400.2 27.586 290 170 9 43 311 49 319 3.47e-21 95.5
Msa1336300 AT3G46500.7 26.429 280 170 11 52 312 11 273 2.44e-20 91.7
Msa1336300 AT3G46500.5 26.786 280 169 11 52 312 11 273 2.55e-20 92.0
Msa1336300 AT3G49630.1 25.623 281 174 6 50 310 9 274 6.32e-20 90.9
Msa1336300 AT3G49630.3 25.746 268 173 5 54 310 18 270 2.12e-19 89.4
Msa1336300 AT1G30040.2 29.339 242 152 9 42 275 23 253 2.36e-19 88.2
Msa1336300 AT1G50960.1 25.352 284 156 8 46 310 36 282 2.79e-19 89.4
Msa1336300 AT3G49620.1 24.199 281 178 6 50 310 34 299 2.32e-18 86.7
Msa1336300 AT2G19590.2 26.432 227 139 7 81 303 26 228 3.21e-18 85.5
Msa1336300 AT3G46490.2 26.298 289 170 12 50 312 9 280 2.55e-15 77.0
Msa1336300 AT3G46490.1 26.644 289 169 12 50 312 9 280 3.24e-15 77.0
Msa1336300 AT1G35190.1 27.239 268 148 12 71 312 29 275 6.84e-15 75.9
Msa1336300 AT1G47990.1 29.856 278 152 11 47 310 12 260 7.25e-13 69.7

Find 90 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTTGTGGCTTCTTTC+AGG 0.072624 tig0001000:+1186 Msa1336300:CDS
CTCTTCTTGGGGTTTCTTTA+TGG 0.132581 tig0001000:+5945 Msa1336300:CDS
TCCACTCTGCTCTCTCTTCT+TGG 0.215151 tig0001000:+5932 Msa1336300:CDS
TGACATATATAAATTATTAT+TGG 0.221607 tig0001000:+905 Msa1336300:five_prime_UTR
ATCAGAGAAATTTCAAAGTT+TGG 0.228245 tig0001000:+3221 Msa1336300:CDS
TTGAAATTTCTCTGATCTTC+AGG 0.231409 tig0001000:-3214 Msa1336300:intergenic
TGAAGATCTGATTCTGAAAA+AGG 0.245846 tig0001000:-5844 Msa1336300:intergenic
CAGAAAATCAACGGCTTGAT+TGG 0.267126 tig0001000:+3164 Msa1336300:CDS
CCTATGCCTGATCATGTTCT+AGG 0.267498 tig0001000:+3963 Msa1336300:CDS
CCACTCTGCTCTCTCTTCTT+GGG 0.276844 tig0001000:+5933 Msa1336300:CDS
TCATCATAGATATAATTATT+TGG 0.277923 tig0001000:-5793 Msa1336300:intergenic
CCATATCCTTCATGACTGTT+TGG 0.309752 tig0001000:-3124 Msa1336300:intergenic
CAATGTCAACGACTGGAATA+TGG 0.309996 tig0001000:-1105 Msa1336300:intergenic
TTCAGCAGAGGTAGAAATAA+TGG 0.326669 tig0001000:+5723 Msa1336300:CDS
AGCTCTTGTTGTGCTGTAAA+TGG 0.338922 tig0001000:-1142 Msa1336300:intergenic
ATCTACGATGAAGGTGGTCT+TGG 0.352285 tig0001000:+1046 Msa1336300:CDS
CATGATGATGTTGAAGGATA+TGG 0.360435 tig0001000:+8037 Msa1336300:CDS
TTTATAACTGCTCTGTGTAT+TGG 0.362139 tig0001000:-4557 Msa1336300:intergenic
CTTTCTCTGTATGCTGATGA+TGG 0.366190 tig0001000:-933 Msa1336300:intergenic
TCATCGTAGATATAATTATA+TGG 0.369314 tig0001000:-1034 Msa1336300:intergenic
TAAACCACCTATTATCTTTG+AGG 0.376533 tig0001000:-4058 Msa1336300:intergenic
ATCCATCAGTATGTGGCTTC+AGG 0.380418 tig0001000:-3986 Msa1336300:intergenic
ACTAGAGCATCATGGACTAT+TGG 0.386668 tig0001000:-4086 Msa1336300:intergenic
CCAAACAGTCATGAAGGATA+TGG 0.392308 tig0001000:+3124 Msa1336300:CDS
ACCTATTATCTTTGAGGACT+TGG 0.392576 tig0001000:-4052 Msa1336300:intergenic
CACTCTGCTCTCTCTTCTTG+GGG 0.402842 tig0001000:+5934 Msa1336300:CDS
TCCAAGTCCTCAAAGATAAT+AGG 0.412829 tig0001000:+4051 Msa1336300:CDS
GTATAATTGACTTAAACTTT+CGG 0.416775 tig0001000:-3826 Msa1336300:intergenic
AGTTTGGCAATGTCAATAAC+TGG 0.419782 tig0001000:-5871 Msa1336300:intergenic
AGCTCCTGCTGTGCTGTAGA+TGG 0.429600 tig0001000:-5901 Msa1336300:intergenic
ATCTATGATGAAGGTGGTGC+TGG 0.441068 tig0001000:+5805 Msa1336300:CDS
AGCAGTTATAAATGCAGAAA+AGG 0.445968 tig0001000:+4568 Msa1336300:CDS
GCAGAATCAGTTGATATAAT+CGG 0.449141 tig0001000:+965 Msa1336300:CDS
TATTATCTTTGAGGACTTGG+AGG 0.471255 tig0001000:-4049 Msa1336300:intergenic
GTATCACATTCAAGTTCATC+AGG 0.474665 tig0001000:-4503 Msa1336300:intergenic
TACACTGCTCTCTCTTCTTG+TGG 0.476581 tig0001000:+1175 Msa1336300:CDS
CTGCAAGATAAAGAGGTAGA+AGG 0.477617 tig0001000:+4026 Msa1336300:CDS
AAATGTATACCTAAAATGAT+CGG 0.481009 tig0001000:-3254 Msa1336300:intergenic
TTCTCCATCTACAGCACAGC+AGG 0.483289 tig0001000:+5897 Msa1336300:CDS
AATGTATACCTAAAATGATC+GGG 0.489754 tig0001000:-3253 Msa1336300:intergenic
TTCAGGCCTAGAACATGATC+AGG 0.493624 tig0001000:-3969 Msa1336300:intergenic
AATAATTATATCTATGATGA+AGG 0.494711 tig0001000:+5796 Msa1336300:CDS
TCAGCAGAGGTAGAAATAAT+GGG 0.502338 tig0001000:+5724 Msa1336300:CDS
TGTAGATGGAGAAGTGAGTT+TGG 0.510265 tig0001000:-5887 Msa1336300:intergenic
TATAATTATATCTACGATGA+AGG 0.510718 tig0001000:+1037 Msa1336300:CDS
GCTTGTTTCTTGACAAAGTG+AGG 0.525833 tig0001000:+7948 Msa1336300:CDS
TAAGAAGCAGTCTTCTTCCA+AGG 0.526612 tig0001000:-3883 Msa1336300:intergenic
CATATCCTTCAACATCATCA+TGG 0.528948 tig0001000:-8036 Msa1336300:intergenic
TGGTAAATCAGTGCAAGAGC+TGG 0.532325 tig0001000:+5747 Msa1336300:CDS
GTTGGTGATCAAATAGAGGT+TGG 0.538613 tig0001000:+4116 Msa1336300:CDS
GCAATTCTTTGAACTTCCAA+AGG 0.540464 tig0001000:+3075 Msa1336300:CDS
GGCCTGAAGCCACATACTGA+TGG 0.541177 tig0001000:+3984 Msa1336300:CDS
CATGGCAAAGTCACTGACCT+TGG 0.543517 tig0001000:+3866 Msa1336300:CDS
CATATTCCAGTCGTTGACAT+TGG 0.550933 tig0001000:+1106 Msa1336300:CDS
TAATGTTGGTGATCAAATAG+AGG 0.552527 tig0001000:+4112 Msa1336300:CDS
CTAGGCCATGATGATGTTGA+AGG 0.555907 tig0001000:+8031 Msa1336300:CDS
GACTGCTTCTTAAATGAATG+TGG 0.556361 tig0001000:+3894 Msa1336300:CDS
CAAGGTCAGTGACTTTGCCA+TGG 0.557381 tig0001000:-3865 Msa1336300:intergenic
GCTTGTTTCTAGACAATGTG+AGG 0.560596 tig0001000:+3041 Msa1336300:CDS
AGGTTACCAATGTCAACGAC+TGG 0.570858 tig0001000:-1112 Msa1336300:intergenic
TTGTAAATCAGTGCAAGAGT+TGG 0.577407 tig0001000:+988 Msa1336300:CDS
CATACAGAGAAAGAGAAAGA+TGG 0.580043 tig0001000:+943 Msa1336300:exon
GCATTTCTTTGAACTTCCAA+AGG 0.582260 tig0001000:+7982 Msa1336300:CDS
CTTGTTTCTTGACAAAGTGA+GGG 0.582916 tig0001000:+7949 Msa1336300:CDS
ATATGGATATCTGATTCTGA+TGG 0.583652 tig0001000:-1088 Msa1336300:intergenic
AGGGAACCAAACAGTCATGA+AGG 0.589673 tig0001000:+3118 Msa1336300:CDS
TAATATTTACAGAAAATCAA+CGG 0.589861 tig0001000:+3155 Msa1336300:CDS
CATTAATCACTAGAGCATCA+TGG 0.595290 tig0001000:-4094 Msa1336300:intergenic
ATAGATGATCCATCAGTATG+TGG 0.597244 tig0001000:-3993 Msa1336300:intergenic
ACATGATCAGGCATAGGACA+TGG 0.597433 tig0001000:-3957 Msa1336300:intergenic
AGAGTTGGTGGGTTCAGCAG+AGG 0.597548 tig0001000:+5711 Msa1336300:CDS
GTGATTCAGGCAATAAACCA+TGG 0.607333 tig0001000:+3010 Msa1336300:intron
GAAACAAGCTTGTCATACCA+TGG 0.609349 tig0001000:-7934 Msa1336300:intergenic
TTATAAATGCAGAAAAGGAA+AGG 0.610942 tig0001000:+4573 Msa1336300:CDS
GAAACAAGCTTGTCATACCA+TGG 0.615924 tig0001000:-3027 Msa1336300:intergenic
AATTATATCTATGATGAAGG+TGG 0.622320 tig0001000:+5799 Msa1336300:CDS
CTTGTTTCTAGACAATGTGA+GGG 0.633565 tig0001000:+3042 Msa1336300:CDS
CCTAGAACATGATCAGGCAT+AGG 0.633688 tig0001000:-3963 Msa1336300:intergenic
GATACACAGATAATGAGCAA+TGG 0.639099 tig0001000:+4521 Msa1336300:CDS
AATTATATCTACGATGAAGG+TGG 0.642911 tig0001000:+1040 Msa1336300:CDS
AAGTCCTCAAAGATAATAGG+TGG 0.643096 tig0001000:+4054 Msa1336300:CDS
GTGATTCAGGTAATAAACCA+TGG 0.646590 tig0001000:+7917 Msa1336300:intron
GATGCTCTAGTGATTAATGT+TGG 0.648997 tig0001000:+4098 Msa1336300:CDS
GACTGACAGAGTTTATCTCA+AGG 0.650187 tig0001000:+3186 Msa1336300:CDS
CCCAAGAAGAGAGAGCAGAG+TGG 0.660002 tig0001000:-5933 Msa1336300:intergenic
GATCAGGCATAGGACATGGA+GGG 0.679288 tig0001000:-3953 Msa1336300:intergenic
TGATCAGGCATAGGACATGG+AGG 0.683082 tig0001000:-3954 Msa1336300:intergenic
TCGTAGATATAATTATATGG+TGG 0.698318 tig0001000:-1031 Msa1336300:intergenic
GCAGAGGTAGAAATAATGGG+TGG 0.712867 tig0001000:+5727 Msa1336300:CDS
GTGCTGTAAATGGAGATGCG+AGG 0.805804 tig0001000:-1132 Msa1336290:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGACATATATAAATTATTAT+TGG + tig0001000:905-924 Msa1336300:five_prime_UTR 10.0%
!!! TACTTTATTCAATTTTTTTA+AGG + tig0001000:1697-1716 Msa1336300:intron 10.0%
!! TGCTAAAATTAAAAAATATA+GGG - tig0001000:1774-1793 Msa1336300:intergenic 10.0%
!! TTGCTAAAATTAAAAAATAT+AGG - tig0001000:1775-1794 Msa1336300:intergenic 10.0%
!!! ATTTTTTAATTTTAGCAAAT+TGG + tig0001000:1777-1796 Msa1336300:intron 10.0%
!!! TCAAAATTTTAAAAATTTAG+GGG - tig0001000:1803-1822 Msa1336300:intergenic 10.0%
!!! TTTTTCTTTTTAATTACTAA+GGG - tig0001000:1834-1853 Msa1336300:intergenic 10.0%
!! AATTAAAAAGAAAAACAAAT+TGG + tig0001000:1839-1858 Msa1336300:intron 10.0%
!! ATTAAAAAGAAAAACAAATT+GGG + tig0001000:1840-1859 Msa1336300:intron 10.0%
!! CAGATTTATTTAAATTATTT+AGG + tig0001000:2112-2131 Msa1336300:intron 10.0%
!!! TTATTTAAATTATTTAGGTT+AGG + tig0001000:2117-2136 Msa1336300:intron 10.0%
!!! TATTTAAATTATTTAGGTTA+GGG + tig0001000:2118-2137 Msa1336300:intron 10.0%
!!! CTTAATAAATGATTAAATTT+TGG - tig0001000:4759-4778 Msa1336300:intergenic 10.0%
!!! TTTGTAAAATATTAGTTTAA+AGG + tig0001000:4879-4898 Msa1336300:intron 10.0%
!! ATAGATAAAAAATAAAACAA+TGG - tig0001000:5019-5038 Msa1336300:intergenic 10.0%
!! AATTATTTGTATATATTTGA+AGG + tig0001000:7814-7833 Msa1336300:intron 10.0%
!!! AAAAACTATAAAAAAGTGTT+TGG - tig0001000:1411-1430 Msa1336300:intergenic 15.0%
!! TATTTCTCCAAAATTAAATT+TGG + tig0001000:1628-1647 Msa1336300:intron 15.0%
!!! ATTTCAAATTCTTACTTTTT+AGG - tig0001000:1669-1688 Msa1336300:intergenic 15.0%
!!! GTTTTTCTTTTTAATTACTA+AGG - tig0001000:1835-1854 Msa1336300:intergenic 15.0%
!!! CTCTATAAATTTTCAAATTT+TGG + tig0001000:1863-1882 Msa1336300:intron 15.0%
!!! ATAAATCTGAAACATAATAA+TGG - tig0001000:2101-2120 Msa1336300:intergenic 15.0%
!!! TTGTTGATATTTATTTTTCA+AGG + tig0001000:2179-2198 Msa1336300:intron 15.0%
!!! TGTTGATATTTATTTTTCAA+GGG + tig0001000:2180-2199 Msa1336300:intron 15.0%
!!! TTTTATCCAATTAAATTTTC+AGG + tig0001000:2248-2267 Msa1336300:intron 15.0%
!! ATTATCTTTGTTAAAACAAA+AGG - tig0001000:2402-2421 Msa1336300:intergenic 15.0%
!!! TGAATTGAAAATATCATTTT+GGG - tig0001000:2928-2947 Msa1336300:intergenic 15.0%
!!! TTGAATTGAAAATATCATTT+TGG - tig0001000:2929-2948 Msa1336300:intergenic 15.0%
!!! ATATTTTCAATTCAATTTTC+TGG + tig0001000:2934-2953 Msa1336300:intron 15.0%
!! TAATATTTACAGAAAATCAA+CGG + tig0001000:3155-3174 Msa1336300:CDS 15.0%
!!! AATTATACGAAGTAATTTTA+AGG + tig0001000:3841-3860 Msa1336300:CDS 15.0%
!!! ATTATACGAAGTAATTTTAA+GGG + tig0001000:3842-3861 Msa1336300:CDS 15.0%
!!! ATCTCAACATAATTTTTTAT+TGG - tig0001000:4692-4711 Msa1336300:intergenic 15.0%
!! AACAATGGAAATTATATATA+AGG - tig0001000:5004-5023 Msa1336300:intergenic 15.0%
!!! TCAAATTTAAATTTTGAACA+TGG + tig0001000:5069-5088 Msa1336300:intron 15.0%
!!! TCACTTTTGTTAAATTAATT+AGG + tig0001000:5150-5169 Msa1336300:intron 15.0%
!!! CTTTTTTTAAACAATTAACT+TGG + tig0001000:5289-5308 Msa1336300:intron 15.0%
!!! TTTTATCTTCCTATTTTTTT+AGG - tig0001000:5656-5675 Msa1336300:intergenic 15.0%
!! TCATCATAGATATAATTATT+TGG - tig0001000:5796-5815 Msa1336300:intergenic 15.0%
!! AATAATTATATCTATGATGA+AGG + tig0001000:5796-5815 Msa1336300:CDS 15.0%
!! TTCATAAATTAAACAGAATT+AGG + tig0001000:6081-6100 Msa1336300:intron 15.0%
!!! AATTAATGTTGAAATTTTGT+AGG + tig0001000:6540-6559 Msa1336300:intron 15.0%
!!! ATTAATGTTGAAATTTTGTA+GGG + tig0001000:6541-6560 Msa1336300:intron 15.0%
!! AGAACAATATAATATTACTT+TGG + tig0001000:7592-7611 Msa1336300:intron 15.0%
!!! TATTTTAGAAACTAAATTGA+TGG - tig0001000:7684-7703 Msa1336300:intergenic 15.0%
!! TCATCGTAGATATAATTATA+TGG - tig0001000:1037-1056 Msa1336300:intergenic 20.0%
!! TATAATTATATCTACGATGA+AGG + tig0001000:1037-1056 Msa1336300:CDS 20.0%
!! TTTGAAAAGAAAAAGAAAAC+TGG + tig0001000:1428-1447 Msa1336300:intron 20.0%
!! TTGAAAAGAAAAAGAAAACT+GGG + tig0001000:1429-1448 Msa1336300:intron 20.0%
!!! TGGATGAAAAAAATATTTTG+AGG + tig0001000:1506-1525 Msa1336300:intron 20.0%
!!! AAGTTCTCCAAATTTAATTT+TGG - tig0001000:1638-1657 Msa1336300:intergenic 20.0%
!! GATTGTTTCATATATCTTTA+AGG + tig0001000:2031-2050 Msa1336300:intron 20.0%
!!! AGCATAATAATGGTTTTATT+TGG + tig0001000:2064-2083 Msa1336300:intron 20.0%
!!! ATAATAATGGTTTTATTTGG+TGG + tig0001000:2067-2086 Msa1336300:intron 20.0%
!!! TAATAATGGTTTTATTTGGT+GGG + tig0001000:2068-2087 Msa1336300:intron 20.0%
!! AGAAGAGATATTACAAAAAT+CGG - tig0001000:2349-2368 Msa1336300:intergenic 20.0%
!! TTAACATTTACATTTCTACT+TGG - tig0001000:2887-2906 Msa1336300:intergenic 20.0%
!! AGAAATGTAAATGTTAAATG+AGG + tig0001000:2890-2909 Msa1336300:intron 20.0%
!! AAATGTATACCTAAAATGAT+CGG - tig0001000:3257-3276 Msa1336300:intergenic 20.0%
!! AACAATATCTTTCATATCAT+TGG + tig0001000:3769-3788 Msa1336300:intron 20.0%
!!! GTATAATTGACTTAAACTTT+CGG - tig0001000:3829-3848 Msa1336300:intergenic 20.0%
!! AGAAATGTTATATATTACGA+CGG + tig0001000:4255-4274 Msa1336300:intron 20.0%
!!! AAAAATGCTCAATATTTTGA+AGG - tig0001000:4434-4453 Msa1336300:intergenic 20.0%
!!! ATAAGGTATTATGTTAAGTT+TGG - tig0001000:4987-5006 Msa1336300:intergenic 20.0%
!! TTATTATACTCTTACTTGTT+AGG - tig0001000:5597-5616 Msa1336300:intergenic 20.0%
!!! ATTTGTTGTCCTAAAAAAAT+AGG + tig0001000:5644-5663 Msa1336300:intron 20.0%
!! GAAACTGTGTTATATATATA+AGG + tig0001000:6697-6716 Msa1336300:intron 20.0%
!! TAAGAATTGTTTATTCAGTT+CGG - tig0001000:7259-7278 Msa1336300:intergenic 20.0%
!!! TAAGATGTTATCGATTAATA+TGG + tig0001000:7734-7753 Msa1336300:intron 20.0%
! TCGTAGATATAATTATATGG+TGG - tig0001000:1034-1053 Msa1336300:intergenic 25.0%
!!! AAAAGAAAACTGGGTTTTAT+AGG + tig0001000:1438-1457 Msa1336300:intron 25.0%
!!! GAGGTAAATGTTATTTTAGA+AGG + tig0001000:1525-1544 Msa1336300:intron 25.0%
!!! ATCTCAATCTTTGTTTTGTT+TGG - tig0001000:1975-1994 Msa1336300:intergenic 25.0%
!!! TTCGATTATCGTTTTTTTGA+AGG + tig0001000:2144-2163 Msa1336300:intron 25.0%
!!! TCGATTATCGTTTTTTTGAA+GGG + tig0001000:2145-2164 Msa1336300:intron 25.0%
!!! TCCAATTAAATTTTCAGGTA+AGG + tig0001000:2253-2272 Msa1336300:intron 25.0%
! ACCTTACCTGAAAATTTAAT+TGG - tig0001000:2257-2276 Msa1336300:intergenic 25.0%
! GAAGAGATATTACAAAAATC+GGG - tig0001000:2348-2367 Msa1336300:intergenic 25.0%
! AATTTGAACTATGTCTCTTT+AGG - tig0001000:2567-2586 Msa1336300:intergenic 25.0%
! TCTCAAAAGTTTAAACTGTT+AGG - tig0001000:2667-2686 Msa1336300:intergenic 25.0%
!!! TTCAATTTTCTGGTACATAT+TGG + tig0001000:2944-2963 Msa1336300:intron 25.0%
!!! TCAATTTTCTGGTACATATT+GGG + tig0001000:2945-2964 Msa1336300:intron 25.0%
! CAAAAAACAGTTGAGAATAT+TGG - tig0001000:2991-3010 Msa1336300:intergenic 25.0%
!!! TATTTTTGCTTTTCTTCCTT+TGG - tig0001000:3094-3113 Msa1336300:intergenic 25.0%
! AAGAAAAGCAAAAATATGCA+AGG + tig0001000:3098-3117 Msa1336300:CDS 25.0%
! AGAAAAGCAAAAATATGCAA+GGG + tig0001000:3099-3118 Msa1336300:CDS 25.0%
! ATCAGAGAAATTTCAAAGTT+TGG + tig0001000:3221-3240 Msa1336300:CDS 25.0%
! AATGTATACCTAAAATGATC+GGG - tig0001000:3256-3275 Msa1336300:intergenic 25.0%
! TAAATTCTCCCAAAAAGTTT+CGG + tig0001000:3561-3580 Msa1336300:intron 25.0%
!! AAACATTTGCGAAACTTTTT+GGG - tig0001000:3605-3624 Msa1336300:intergenic 25.0%
!! TAAACATTTGCGAAACTTTT+TGG - tig0001000:3606-3625 Msa1336300:intergenic 25.0%
! AAAGAAGTTGTAAACCATAA+CGG + tig0001000:3710-3729 Msa1336300:intron 25.0%
!! CTACCTTAGTTCTTTATATT+TGG + tig0001000:4151-4170 Msa1336300:intron 25.0%
! CAACCAAATATAAAGAACTA+AGG - tig0001000:4157-4176 Msa1336300:intergenic 25.0%
! ATCTATGATATATAACCCAT+AGG + tig0001000:4470-4489 Msa1336300:intron 25.0%
! TTATAAATGCAGAAAAGGAA+AGG + tig0001000:4573-4592 Msa1336300:CDS 25.0%
!! TTTATTGGTCTGTATAACTT+AGG - tig0001000:4677-4696 Msa1336300:intergenic 25.0%
! TTATTAAGTACAATGCTTCT+TGG + tig0001000:4771-4790 Msa1336300:intron 25.0%
! TTATGATATTGACAAGTACA+TGG + tig0001000:4937-4956 Msa1336300:intron 25.0%
!! TTTAAATTTTGAACATGGCA+AGG + tig0001000:5074-5093 Msa1336300:intron 25.0%
! GATAGATATTGTTGAATCTT+AGG + tig0001000:5237-5256 Msa1336300:intron 25.0%
!! AATTAACTTGGTATATCTGA+AGG + tig0001000:5301-5320 Msa1336300:intron 25.0%
! AAGAAAAGCAAAAATATGCA+AGG + tig0001000:3098-3117 Msa1336300:CDS 25.0%
! AGAAAAGCAAAAATATGCAA+GGG + tig0001000:3099-3118 Msa1336300:CDS 25.0%
! AAATCAAAAGCTATTCTTAC+AGG + tig0001000:5388-5407 Msa1336300:intron 25.0%
! AATTATATCTATGATGAAGG+TGG + tig0001000:5799-5818 Msa1336300:CDS 25.0%
! TGTACATAACTGAAAGTTTA+GGG + tig0001000:6362-6381 Msa1336300:intron 25.0%
! GAGACAAATTTCAACATATT+CGG - tig0001000:6520-6539 Msa1336300:intergenic 25.0%
! ATATATAAGGCTTCATTCTT+TGG + tig0001000:6710-6729 Msa1336300:intron 25.0%
! AAATCAAATGAGGTAACTTT+AGG + tig0001000:6761-6780 Msa1336300:intron 25.0%
! AATCAAATGAGGTAACTTTA+GGG + tig0001000:6762-6781 Msa1336300:intron 25.0%
!! TTTTCTCTTAGGATTAATTG+TGG + tig0001000:6888-6907 Msa1336300:intron 25.0%
! TTTCTCTTAGGATTAATTGT+GGG + tig0001000:6889-6908 Msa1336300:intron 25.0%
!! AAAAATTATGGTTGGTTCTT+TGG + tig0001000:6936-6955 Msa1336300:intron 25.0%
!! AAAATTATGGTTGGTTCTTT+GGG + tig0001000:6937-6956 Msa1336300:intron 25.0%
! ATGATGGCAATAAATTTATG+AGG + tig0001000:7018-7037 Msa1336300:intron 25.0%
! TGATGGCAATAAATTTATGA+GGG + tig0001000:7019-7038 Msa1336300:intron 25.0%
!! AATTTCGAGTGATTTGAAAA+AGG + tig0001000:7113-7132 Msa1336300:intron 25.0%
!! ATTTCGAGTGATTTGAAAAA+GGG + tig0001000:7114-7133 Msa1336300:intron 25.0%
!!! TTGGTTCTTAGATTAGTTTT+AGG + tig0001000:7335-7354 Msa1336300:intron 25.0%
! TTAGATGTATATGGAGTAAA+AGG - tig0001000:7404-7423 Msa1336300:intergenic 25.0%
! AACTCTCTCAAAAAGTTAAA+TGG - tig0001000:7442-7461 Msa1336300:intergenic 25.0%
! TTAGGATTTACATTTCTACT+TGG - tig0001000:7650-7669 Msa1336300:intergenic 25.0%
! TTAGAAACTAAATTGATGGA+TGG - tig0001000:7680-7699 Msa1336300:intergenic 25.0%
! TCTTAATAGCAATGACTAAA+GGG - tig0001000:7719-7738 Msa1336300:intergenic 25.0%
! ATCTTAATAGCAATGACTAA+AGG - tig0001000:7720-7739 Msa1336300:intergenic 25.0%
!! GTGGATTTTTATATGCTTTA+GGG + tig0001000:7756-7775 Msa1336300:intron 25.0%
!! GAGATACGAATTAATTTTTC+TGG + tig0001000:7848-7867 Msa1336300:intron 25.0%
!!! TTAATTTTTCTGGTACATAG+TGG + tig0001000:7858-7877 Msa1336300:intron 25.0%
! TATGTTATCTTTTGCGTGAA+AGG + tig0001000:862-881 Msa1336300:five_prime_UTR 30.0%
! GCAGAATCAGTTGATATAAT+CGG + tig0001000:965-984 Msa1336300:CDS 30.0%
AATTATATCTACGATGAAGG+TGG + tig0001000:1040-1059 Msa1336300:CDS 30.0%
ATATGGATATCTGATTCTGA+TGG - tig0001000:1091-1110 Msa1336300:intergenic 30.0%
CTAAATTGATGCTTGAATGT+TGG - tig0001000:1268-1287 Msa1336300:intergenic 30.0%
CATCCAAACAAATTCGAATT+CGG - tig0001000:1492-1511 Msa1336300:intergenic 30.0%
AAGACAATCGAGCATAATAA+TGG + tig0001000:2054-2073 Msa1336300:intron 30.0%
!!! CGATTATCGTTTTTTTGAAG+GGG + tig0001000:2146-2165 Msa1336300:intron 30.0%
AAGCTCTTGATTGTTTACTT+TGG + tig0001000:2301-2320 Msa1336300:intron 30.0%
!! ACATACTCTAAGATCATGTT+TGG - tig0001000:2433-2452 Msa1336300:intergenic 30.0%
ACATGATCTTAGAGTATGTT+TGG + tig0001000:2434-2453 Msa1336300:intron 30.0%
TTAGAGTATGTTTGGATCTT+TGG + tig0001000:2442-2461 Msa1336300:intron 30.0%
!! TATGTTTGGATCTTTGGAAT+AGG + tig0001000:2448-2467 Msa1336300:intron 30.0%
GGAATAGGATGTAATGAAAT+AGG + tig0001000:2463-2482 Msa1336300:intron 30.0%
GTTTGAACATGTGGTATTAT+AGG - tig0001000:2541-2560 Msa1336300:intergenic 30.0%
TTTAGGTATGTTTGAACATG+TGG - tig0001000:2550-2569 Msa1336300:intergenic 30.0%
!! TATGATCCATTGATTCAAAC+TGG + tig0001000:2800-2819 Msa1336300:intron 30.0%
CAACAGTATAATCTGTACTT+TGG + tig0001000:2826-2845 Msa1336300:intron 30.0%
!! CAATTTTCTGGTACATATTG+GGG + tig0001000:2946-2965 Msa1336300:intron 30.0%
!! AATTTTCTGGTACATATTGG+GGG + tig0001000:2947-2966 Msa1336300:intron 30.0%
!!! TCAACTGTTTTTTGTGATTC+AGG + tig0001000:2997-3016 Msa1336300:intron 30.0%
TTGAAATTTCTCTGATCTTC+AGG - tig0001000:3217-3236 Msa1336300:intergenic 30.0%
ACGAATTTCTCTGATCTTAA+TGG - tig0001000:3286-3305 Msa1336300:intergenic 30.0%
! ACCAAAAGATTTTGCTTTCT+TGG + tig0001000:3356-3375 Msa1336300:intron 30.0%
! TCCAAGAAAGCAAAATCTTT+TGG - tig0001000:3360-3379 Msa1336300:intergenic 30.0%
TTGGATATTCACATACTGTA+AGG + tig0001000:3375-3394 Msa1336300:intron 30.0%
GTGATACAAGCACTTAATTA+AGG - tig0001000:3455-3474 Msa1336300:intergenic 30.0%
AAATTCTCCCAAAAAGTTTC+GGG + tig0001000:3562-3581 Msa1336300:intron 30.0%
! GTAATAACACTAGGTTTGTT+TGG - tig0001000:3658-3677 Msa1336300:intergenic 30.0%
TGTCTAAGAGTAATAACACT+AGG - tig0001000:3667-3686 Msa1336300:intergenic 30.0%
! AGTGTTATTACTCTTAGACA+AGG + tig0001000:3667-3686 Msa1336300:intron 30.0%
CAACTTCTTTCAGATATCTA+TGG - tig0001000:3700-3719 Msa1336300:intergenic 30.0%
TAAACCACCTATTATCTTTG+AGG - tig0001000:4061-4080 Msa1336300:intergenic 30.0%
!! TAATGTTGGTGATCAAATAG+AGG + tig0001000:4112-4131 Msa1336300:CDS 30.0%
TTTATAACTGCTCTGTGTAT+TGG - tig0001000:4560-4579 Msa1336300:intergenic 30.0%
AGCAGTTATAAATGCAGAAA+AGG + tig0001000:4568-4587 Msa1336300:CDS 30.0%
TAATCTCTTTCTCTGAATCT+GGG - tig0001000:4622-4641 Msa1336300:intergenic 30.0%
TTAATCTCTTTCTCTGAATC+TGG - tig0001000:4623-4642 Msa1336300:intergenic 30.0%
TTCAGAGAAAGAGATTAAAC+CGG + tig0001000:4625-4644 Msa1336300:intron 30.0%
! TTGTTCACTAATTTGTCAAC+CGG - tig0001000:4647-4666 Msa1336300:intergenic 30.0%
!! TTTTGTGAGTTGAAAGAGAA+TGG + tig0001000:4797-4816 Msa1336300:intron 30.0%
! ATTTTATGTAGCTACAGCTT+TGG - tig0001000:4850-4869 Msa1336300:intergenic 30.0%
!! ATGATAGTTGTACTGATTCT+AGG + tig0001000:5562-5581 Msa1336300:intron 30.0%
CTTCATCAGTATCAGAAAAA+TGG + tig0001000:5687-5706 Msa1336300:CDS 30.0%
TATCAGAAAAATGGAAGAGT+TGG + tig0001000:5696-5715 Msa1336300:CDS 30.0%
ATTTGAAAAATGTAAGCAGC+AGG - tig0001000:5995-6014 Msa1336300:intergenic 30.0%
TTAAAGTGATGTCTGAATGT+TGG - tig0001000:6058-6077 Msa1336300:intergenic 30.0%
GTGTACATAACTGAAAGTTT+AGG + tig0001000:6361-6380 Msa1336300:intron 30.0%
! ATAGAGGGATTTAAAGTGTT+CGG - tig0001000:6473-6492 Msa1336300:intergenic 30.0%
AACTTCAAGAGAGAGAAATT+TGG + tig0001000:6737-6756 Msa1336300:intron 30.0%
ACTTCAAGAGAGAGAAATTT+GGG + tig0001000:6738-6757 Msa1336300:intron 30.0%
GAAATTTGGGAAATCAAATG+AGG + tig0001000:6751-6770 Msa1336300:intron 30.0%
! TTTCGTTAGTGTTTTCTCTT+AGG + tig0001000:6877-6896 Msa1336300:intron 30.0%
GAACAAAGGGGTAAAAATTA+TGG + tig0001000:6924-6943 Msa1336300:intron 30.0%
AAAGGGGTAAAAATTATGGT+TGG + tig0001000:6928-6947 Msa1336300:intron 30.0%
!! ATGATAAGAGTGTTACAAAG+AGG - tig0001000:6987-7006 Msa1336300:intergenic 30.0%
GATGGCAATAAATTTATGAG+GGG + tig0001000:7020-7039 Msa1336300:intron 30.0%
ATGGCAATAAATTTATGAGG+GGG + tig0001000:7021-7040 Msa1336300:intron 30.0%
! TTTCGAGTGATTTGAAAAAG+GGG + tig0001000:7115-7134 Msa1336300:intron 30.0%
TGAAAAAGGGGTAGAAATTA+TGG + tig0001000:7127-7146 Msa1336300:intron 30.0%
! AGAAATTATGGTTGGTTCTT+TGG + tig0001000:7139-7158 Msa1336300:intron 30.0%
! GAAATTATGGTTGGTTCTTT+GGG + tig0001000:7140-7159 Msa1336300:intron 30.0%
ACACTCTTATCATAGTAAAG+TGG + tig0001000:7197-7216 Msa1336300:intron 30.0%
! CTTCTCTTCTTTTCTTTTGT+TGG + tig0001000:7293-7312 Msa1336300:intron 30.0%
!!! TGGTTTTGTGTTTATACACT+TGG + tig0001000:7316-7335 Msa1336300:intron 30.0%
! TTTAGGATTGTTGTAACTTG+AGG + tig0001000:7352-7371 Msa1336300:intron 30.0%
GAAGACACTTTAGATGTATA+TGG - tig0001000:7413-7432 Msa1336300:intergenic 30.0%
TCTCAAAAAGTTAAATGGCT+AGG - tig0001000:7437-7456 Msa1336300:intergenic 30.0%
TGATGTATGCAGAAGTTAAA+TGG - tig0001000:7518-7537 Msa1336300:intergenic 30.0%
!! TTGATGGATGGTTTTTCTTT+AGG - tig0001000:7668-7687 Msa1336300:intergenic 30.0%
! GATGTTATCGATTAATATGG+TGG + tig0001000:7737-7756 Msa1336300:intron 30.0%
!! GGTGGATTTTTATATGCTTT+AGG + tig0001000:7755-7774 Msa1336300:intron 30.0%
! AAAACAGTTGGGAATGTTTT+TGG - tig0001000:7894-7913 Msa1336300:intergenic 30.0%
!! CATTTTTGCTTTTCTTCCTT+TGG - tig0001000:8001-8020 Msa1336300:intergenic 30.0%
AAGAAAAGCAAAAATGTGCT+AGG + tig0001000:8005-8024 Msa1336300:CDS 30.0%
AGAAAAGCAAAAATGTGCTA+GGG + tig0001000:8006-8025 Msa1336300:CDS 30.0%
CATACAGAGAAAGAGAAAGA+TGG + tig0001000:943-962 Msa1336300:exon 35.0%
TTGTAAATCAGTGCAAGAGT+TGG + tig0001000:988-1007 Msa1336300:CDS 35.0%
TACTATGATACAGCTAACTC+TGG + tig0001000:1348-1367 Msa1336300:intron 35.0%
!! ACTGGGTTTTATAGGATTGT+TGG + tig0001000:1446-1465 Msa1336300:intron 35.0%
!!! CACTCTTTTTTTCTTCGTCA+AGG + tig0001000:2225-2244 Msa1336300:intron 35.0%
GAGATATTACAAAAATCGGG+TGG - tig0001000:2345-2364 Msa1336300:intergenic 35.0%
!! CTCTAAGATCATGTTTGGAT+AGG - tig0001000:2428-2447 Msa1336300:intergenic 35.0%
GAACATGTGGTATTATAGGA+CGG - tig0001000:2537-2556 Msa1336300:intergenic 35.0%
TTGTCTCCAGTTTGAATCAA+TGG - tig0001000:2809-2828 Msa1336300:intergenic 35.0%
ATCTGTACTTTGGATACTCT+AGG + tig0001000:2836-2855 Msa1336300:intron 35.0%
!! CTTGTTTCTAGACAATGTGA+GGG + tig0001000:3042-3061 Msa1336300:CDS 35.0%
GCAATTCTTTGAACTTCCAA+AGG + tig0001000:3075-3094 Msa1336300:CDS 35.0%
! CTAAAATGATCGGGTTTTTG+TGG - tig0001000:3247-3266 Msa1336300:intergenic 35.0%
! CACAAAAACCCGATCATTTT+AGG + tig0001000:3245-3264 Msa1336300:CDS 35.0%
! GAAACAACCCGAAACTTTTT+GGG - tig0001000:3572-3591 Msa1336300:intergenic 35.0%
! TAACACTAGGTTTGTTTGGA+TGG - tig0001000:3654-3673 Msa1336300:intergenic 35.0%
AGATACTTGTATCACCGTTA+TGG - tig0001000:3727-3746 Msa1336300:intergenic 35.0%
GACTGCTTCTTAAATGAATG+TGG + tig0001000:3894-3913 Msa1336300:CDS 35.0%
ATAGATGATCCATCAGTATG+TGG - tig0001000:3996-4015 Msa1336300:intergenic 35.0%
! TTTTGTGCTGCAAGATAAAG+AGG + tig0001000:4019-4038 Msa1336300:CDS 35.0%
! TATTATCTTTGAGGACTTGG+AGG - tig0001000:4052-4071 Msa1336300:intergenic 35.0%
TCCAAGTCCTCAAAGATAAT+AGG + tig0001000:4051-4070 Msa1336300:CDS 35.0%
! ACCTATTATCTTTGAGGACT+TGG - tig0001000:4055-4074 Msa1336300:intergenic 35.0%
AAGTCCTCAAAGATAATAGG+TGG + tig0001000:4054-4073 Msa1336300:CDS 35.0%
! CATTAATCACTAGAGCATCA+TGG - tig0001000:4097-4116 Msa1336300:intergenic 35.0%
GATGCTCTAGTGATTAATGT+TGG + tig0001000:4098-4117 Msa1336300:CDS 35.0%
GCAACAACATACGAATATCA+AGG + tig0001000:4282-4301 Msa1336300:intron 35.0%
TTGTGATTTCCACCTTTGAT+AGG + tig0001000:4346-4365 Msa1336300:intron 35.0%
! GTATCACATTCAAGTTCATC+AGG - tig0001000:4506-4525 Msa1336300:intergenic 35.0%
GATACACAGATAATGAGCAA+TGG + tig0001000:4521-4540 Msa1336300:CDS 35.0%
ACAAATTAGTGAACAAGTCG+AGG + tig0001000:4651-4670 Msa1336300:intron 35.0%
TATTTCCAGTATTACCAGCA+AGG + tig0001000:4713-4732 Msa1336300:intron 35.0%
! TTTTTCCTTGCTGGTAATAC+TGG - tig0001000:4721-4740 Msa1336300:intergenic 35.0%
AGTATTACCAGCAAGGAAAA+AGG + tig0001000:4720-4739 Msa1336300:intron 35.0%
GTATTACCAGCAAGGAAAAA+GGG + tig0001000:4721-4740 Msa1336300:intron 35.0%
TGATATTGACAAGTACATGG+AGG + tig0001000:4940-4959 Msa1336300:intron 35.0%
!! TTTCTTTGATTTTCTCGCAG+AGG + tig0001000:5215-5234 Msa1336300:intron 35.0%
AAATATGCAAGGGAACCAAA+CGG + tig0001000:3109-3128 Msa1336300:CDS 35.0%
! ACATCATTTTCAGTACCGTT+TGG - tig0001000:5353-5372 Msa1336300:intergenic 35.0%
! CATCATAAGTGTCATTGCTT+AGG + tig0001000:5458-5477 Msa1336300:intron 35.0%
! CTCTTACTTGTTAGGTAACT+GGG - tig0001000:5589-5608 Msa1336300:intergenic 35.0%
! ACTCTTACTTGTTAGGTAAC+TGG - tig0001000:5590-5609 Msa1336300:intergenic 35.0%
! AGAAAAATGGAAGAGTTGGT+GGG + tig0001000:5700-5719 Msa1336300:CDS 35.0%
TTCAGCAGAGGTAGAAATAA+TGG + tig0001000:5723-5742 Msa1336300:CDS 35.0%
TCAGCAGAGGTAGAAATAAT+GGG + tig0001000:5724-5743 Msa1336300:CDS 35.0%
AGTTTGGCAATGTCAATAAC+TGG - tig0001000:5874-5893 Msa1336300:intergenic 35.0%
CTCAGATGATAAATAACTGC+AGG - tig0001000:6135-6154 Msa1336300:intergenic 35.0%
AGCATAACTGAAATAACTGC+GGG - tig0001000:6201-6220 Msa1336300:intergenic 35.0%
GAGCATAACTGAAATAACTG+CGG - tig0001000:6202-6221 Msa1336300:intergenic 35.0%
!! AACTGAAAGTTTAGGGCTTT+TGG + tig0001000:6369-6388 Msa1336300:intron 35.0%
AGTGACAACTGTTTAGGTAA+CGG - tig0001000:6403-6422 Msa1336300:intergenic 35.0%
TTACCTAAACAGTTGTCACT+TGG + tig0001000:6403-6422 Msa1336300:intron 35.0%
! TACCTAAACAGTTGTCACTT+GGG + tig0001000:6404-6423 Msa1336300:intron 35.0%
AAATTAGGACGAGTTGTCAT+TGG + tig0001000:6440-6459 Msa1336300:intron 35.0%
! GAAATTTTGTAGGGAAATCG+TGG + tig0001000:6550-6569 Msa1336300:intron 35.0%
GTTTGAGTGACTTGAACAAA+GGG + tig0001000:6911-6930 Msa1336300:intron 35.0%
TTTGAGTGACTTGAACAAAG+GGG + tig0001000:6912-6931 Msa1336300:intron 35.0%
AACACTCTTATCATAGTCAG+CGG + tig0001000:6993-7012 Msa1336300:intron 35.0%
AAAGGGGTAGAAATTATGGT+TGG + tig0001000:7131-7150 Msa1336300:intron 35.0%
TCTAACAATGACTTCCTCTA+GGG - tig0001000:7236-7255 Msa1336300:intergenic 35.0%
! CTCTTCTTTTCTTTTGTTGG+TGG + tig0001000:7296-7315 Msa1336300:intron 35.0%
! GTTGTTTGATGACAAACAGT+AGG + tig0001000:7459-7478 Msa1336300:intron 35.0%
ATTGAGTTTCTCTCCATTGA+CGG - tig0001000:7567-7586 Msa1336300:intergenic 35.0%
!! ATTTTTCTGGTACATAGTGG+TGG + tig0001000:7861-7880 Msa1336300:intron 35.0%
TGAATCACAGCAAAACAGTT+GGG - tig0001000:7905-7924 Msa1336300:intergenic 35.0%
GTGATTCAGGTAATAAACCA+TGG + tig0001000:7917-7936 Msa1336300:intron 35.0%
! CTTGTTTCTTGACAAAGTGA+GGG + tig0001000:7949-7968 Msa1336300:CDS 35.0%
GCATTTCTTTGAACTTCCAA+AGG + tig0001000:7982-8001 Msa1336300:CDS 35.0%
GAAAAGCAAAAATGTGCTAG+GGG + tig0001000:8007-8026 Msa1336300:CDS 35.0%
AAAAGCAAAAATGTGCTAGG+GGG + tig0001000:8008-8027 Msa1336300:CDS 35.0%
CATATCCTTCAACATCATCA+TGG - tig0001000:8039-8058 Msa1336300:intergenic 35.0%
! CATGATGATGTTGAAGGATA+TGG + tig0001000:8037-8056 Msa1336300:CDS 35.0%
CTTTCTCTGTATGCTGATGA+TGG - tig0001000:936-955 Msa1336300:intergenic 40.0%
CAATGTCAACGACTGGAATA+TGG - tig0001000:1108-1127 Msa1336300:intergenic 40.0%
CATATTCCAGTCGTTGACAT+TGG + tig0001000:1106-1125 Msa1336300:CDS 40.0%
! AGCTCTTGTTGTGCTGTAAA+TGG - tig0001000:1145-1164 Msa1336300:intergenic 40.0%
! GCACCGAATTCGAATTTGTT+TGG + tig0001000:1486-1505 Msa1336300:intron 40.0%
GTGATTCAGGCAATAAACCA+TGG + tig0001000:3010-3029 Msa1336300:intron 40.0%
GAAACAAGCTTGTCATACCA+TGG - tig0001000:3030-3049 Msa1336300:intergenic 40.0%
!! GCTTGTTTCTAGACAATGTG+AGG + tig0001000:3041-3060 Msa1336300:CDS 40.0%
CCATATCCTTCATGACTGTT+TGG - tig0001000:3127-3146 Msa1336300:intergenic 40.0%
CCAAACAGTCATGAAGGATA+TGG + tig0001000:3124-3143 Msa1336300:CDS 40.0%
CAGAAAATCAACGGCTTGAT+TGG + tig0001000:3164-3183 Msa1336300:CDS 40.0%
GACTGACAGAGTTTATCTCA+AGG + tig0001000:3186-3205 Msa1336300:CDS 40.0%
ACTGTAAGGCTGTAATCACA+TGG + tig0001000:3389-3408 Msa1336300:intron 40.0%
! CGAAACAACCCGAAACTTTT+TGG - tig0001000:3573-3592 Msa1336300:intergenic 40.0%
ATCATTGGACTACTCAATGC+AGG + tig0001000:3784-3803 Msa1336300:intron 40.0%
!! CGAAGTAATTTTAAGGGCCA+TGG + tig0001000:3848-3867 Msa1336300:CDS 40.0%
TAAGAAGCAGTCTTCTTCCA+AGG - tig0001000:3886-3905 Msa1336300:intergenic 40.0%
CTGCAAGATAAAGAGGTAGA+AGG + tig0001000:4026-4045 Msa1336300:CDS 40.0%
! ACTAGAGCATCATGGACTAT+TGG - tig0001000:4089-4108 Msa1336300:intergenic 40.0%
!! GTTGGTGATCAAATAGAGGT+TGG + tig0001000:4116-4135 Msa1336300:CDS 40.0%
ACACACACGATACCTATCAA+AGG - tig0001000:4361-4380 Msa1336300:intergenic 40.0%
! TCAGGTTGTGTCAATCCTAT+GGG - tig0001000:4488-4507 Msa1336300:intergenic 40.0%
! ATCAGGTTGTGTCAATCCTA+TGG - tig0001000:4489-4508 Msa1336300:intergenic 40.0%
TGTAGTATATGCAGCAACAC+AGG - tig0001000:5109-5128 Msa1336300:intergenic 40.0%
TTGCTGCATATACTACAGAG+AGG + tig0001000:5112-5131 Msa1336300:intron 40.0%
! TGTGAATCCGCATGTTACTT+CGG - tig0001000:5523-5542 Msa1336300:intergenic 40.0%
CAGAAAAATGGAAGAGTTGG+TGG + tig0001000:5699-5718 Msa1336300:CDS 40.0%
TGTAGATGGAGAAGTGAGTT+TGG - tig0001000:5890-5909 Msa1336300:intergenic 40.0%
CTCTTCTTGGGGTTTCTTTA+TGG + tig0001000:5945-5964 Msa1336300:CDS 40.0%
GTCTGAATGTTGGATTGTTG+AGG - tig0001000:6048-6067 Msa1336300:intergenic 40.0%
GCATAACTGAAATAACTGCG+GGG - tig0001000:6200-6219 Msa1336300:intergenic 40.0%
AACCACCTTCTTCTTCAAAG+AGG + tig0001000:6264-6283 Msa1336300:intron 40.0%
ACCACCTTCTTCTTCAAAGA+GGG + tig0001000:6265-6284 Msa1336300:intron 40.0%
! ACTACCCTCTTTGAAGAAGA+AGG - tig0001000:6272-6291 Msa1336300:intergenic 40.0%
! CTTGACCATCGAAGTATTTG+CGG - tig0001000:6298-6317 Msa1336300:intergenic 40.0%
! CTGTTTAGGTAACGGTTCAA+GGG - tig0001000:6395-6414 Msa1336300:intergenic 40.0%
! ACTGTTTAGGTAACGGTTCA+AGG - tig0001000:6396-6415 Msa1336300:intergenic 40.0%
! ACCTAAACAGTTGTCACTTG+GGG + tig0001000:6405-6424 Msa1336300:intron 40.0%
GGGACATCTGTAAGCAAATT+AGG + tig0001000:6425-6444 Msa1336300:intron 40.0%
!! ATGAGGTAACTTTAGGGTTG+AGG + tig0001000:6768-6787 Msa1336300:intron 40.0%
!! ACTTTAGGGTTGAGGATCTT+TGG + tig0001000:6776-6795 Msa1336300:intron 40.0%
TAGTAGTGAGCTGTCATTAG+AGG + tig0001000:6840-6859 Msa1336300:intron 40.0%
GGTTTGAGTGACTTGAACAA+AGG + tig0001000:6910-6929 Msa1336300:intron 40.0%
CTAACAATGACTTCCTCTAG+GGG - tig0001000:7235-7254 Msa1336300:intergenic 40.0%
GTCTAACAATGACTTCCTCT+AGG - tig0001000:7237-7256 Msa1336300:intergenic 40.0%
! GTTTGATGACAAACAGTAGG+AGG + tig0001000:7462-7481 Msa1336300:intron 40.0%
TACATCAAGCATCACTGAAG+TGG + tig0001000:7531-7550 Msa1336300:intron 40.0%
CTGAATCACAGCAAAACAGT+TGG - tig0001000:7906-7925 Msa1336300:intergenic 40.0%
!! CAACTGTTTTGCTGTGATTC+AGG + tig0001000:7904-7923 Msa1336300:intron 40.0%
GAAACAAGCTTGTCATACCA+TGG - tig0001000:3030-3049 Msa1336300:intergenic 40.0%
! GCTTGTTTCTTGACAAAGTG+AGG + tig0001000:7948-7967 Msa1336300:CDS 40.0%
ATCTACGATGAAGGTGGTCT+TGG + tig0001000:1046-1065 Msa1336300:CDS 45.0%
AGGTTACCAATGTCAACGAC+TGG - tig0001000:1115-1134 Msa1336300:intergenic 45.0%
TACACTGCTCTCTCTTCTTG+TGG + tig0001000:1175-1194 Msa1336300:CDS 45.0%
CTCTTCTTGTGGCTTCTTTC+AGG + tig0001000:1186-1205 Msa1336300:CDS 45.0%
AGGGAACCAAACAGTCATGA+AGG + tig0001000:3118-3137 Msa1336300:CDS 45.0%
ACATGATCAGGCATAGGACA+TGG - tig0001000:3960-3979 Msa1336300:intergenic 45.0%
CCTAGAACATGATCAGGCAT+AGG - tig0001000:3966-3985 Msa1336300:intergenic 45.0%
CCTATGCCTGATCATGTTCT+AGG + tig0001000:3963-3982 Msa1336300:CDS 45.0%
TTCAGGCCTAGAACATGATC+AGG - tig0001000:3972-3991 Msa1336300:intergenic 45.0%
ATCCATCAGTATGTGGCTTC+AGG - tig0001000:3989-4008 Msa1336300:intergenic 45.0%
CACACGATACCTATCAAAGG+TGG - tig0001000:4358-4377 Msa1336300:intergenic 45.0%
! CAATTGCCCTTTTTCCTTGC+TGG - tig0001000:4730-4749 Msa1336300:intergenic 45.0%
! AATCCGCATGTTACTTCGGT+CGG - tig0001000:5519-5538 Msa1336300:intergenic 45.0%
! GCAGAGGTAGAAATAATGGG+TGG + tig0001000:5727-5746 Msa1336300:CDS 45.0%
TGGTAAATCAGTGCAAGAGC+TGG + tig0001000:5747-5766 Msa1336300:CDS 45.0%
ATCTATGATGAAGGTGGTGC+TGG + tig0001000:5805-5824 Msa1336300:CDS 45.0%
! CAGTTATGCTCTGAATGACG+AGG + tig0001000:6211-6230 Msa1336300:intron 45.0%
! ACCCTCTTTGAAGAAGAAGG+TGG - tig0001000:6269-6288 Msa1336300:intergenic 45.0%
GTGTACCGCAAATACTTCGA+TGG + tig0001000:6290-6309 Msa1336300:intron 45.0%
TCCCCAAGTGACAACTGTTT+AGG - tig0001000:6409-6428 Msa1336300:intergenic 45.0%
TCGGATCCTCTTTACAGTGT+GGG - tig0001000:6501-6520 Msa1336300:intergenic 45.0%
TTCGGATCCTCTTTACAGTG+TGG - tig0001000:6502-6521 Msa1336300:intergenic 45.0%
AAATCGTGGCACCTTGGTTT+AGG + tig0001000:6564-6583 Msa1336300:intron 45.0%
ACGGTTTGTGTTGCGAAGTT+TGG + tig0001000:6595-6614 Msa1336300:intron 45.0%
GTGAGCCATTGGAAATATCG+TGG + tig0001000:6619-6638 Msa1336300:intron 45.0%
TCGTGCCACGATATTTCCAA+TGG - tig0001000:6627-6646 Msa1336300:intergenic 45.0%
TCTTTGGTGAGAGGTTCTCT+TGG + tig0001000:6792-6811 Msa1336300:intron 45.0%
CTTTGGTGAGAGGTTCTCTT+GGG + tig0001000:6793-6812 Msa1336300:intron 45.0%
AGTGAGCTGTCATTAGAGGA+AGG + tig0001000:6844-6863 Msa1336300:intron 45.0%
! TTGGTTCTTTGGGAGCTTGT+AGG + tig0001000:6947-6966 Msa1336300:intron 45.0%
! CTAGGCCATGATGATGTTGA+AGG + tig0001000:8031-8050 Msa1336300:CDS 45.0%
!!! TTCAAAATTTTAAAAATTTA+GGG - tig0001000:1804-1823 Msa1336300:intergenic 5.0%
!!! TTTCAAAATTTTAAAAATTT+AGG - tig0001000:1805-1824 Msa1336300:intergenic 5.0%
!! AAAAATTTAATAATTTATAG+TGG - tig0001000:1896-1915 Msa1336300:intergenic 5.0%
!!! AAATTATTAAATTTTTTTGT+TGG + tig0001000:1900-1919 Msa1336300:intron 5.0%
!!! TAAAAAATTTGAAATTTATA+AGG - tig0001000:1927-1946 Msa1336300:intergenic 5.0%
!!! TTCTTTTTTTAAATATAAAA+AGG + tig0001000:2365-2384 Msa1336300:intron 5.0%
!!! AAATATTTTCATAAAATAAA+CGG - tig0001000:4227-4246 Msa1336300:intergenic 5.0%
GTGCTGTAAATGGAGATGCG+AGG - tig0001000:1135-1154 Msa1336300:intergenic 50.0%
CAAGGTCAGTGACTTTGCCA+TGG - tig0001000:3868-3887 Msa1336300:intergenic 50.0%
CATGGCAAAGTCACTGACCT+TGG + tig0001000:3866-3885 Msa1336300:CDS 50.0%
GATCAGGCATAGGACATGGA+GGG - tig0001000:3956-3975 Msa1336300:intergenic 50.0%
TGATCAGGCATAGGACATGG+AGG - tig0001000:3957-3976 Msa1336300:intergenic 50.0%
! GTTCCAGCACAGCGATTTTG+TGG - tig0001000:5195-5214 Msa1336300:intergenic 50.0%
TTCTCCATCTACAGCACAGC+AGG + tig0001000:5897-5916 Msa1336300:CDS 50.0%
TCCACTCTGCTCTCTCTTCT+TGG + tig0001000:5932-5951 Msa1336300:CDS 50.0%
CCACTCTGCTCTCTCTTCTT+GGG + tig0001000:5933-5952 Msa1336300:CDS 50.0%
CACTCTGCTCTCTCTTCTTG+GGG + tig0001000:5934-5953 Msa1336300:CDS 50.0%
! TGAATGACGAGGTGTCTTCG+AGG + tig0001000:6222-6241 Msa1336300:intron 50.0%
! GTCAAGTCAGTAAGCACCGT+GGG + tig0001000:6312-6331 Msa1336300:intron 50.0%
!! ACAGTGTGGGCTAGCATAGA+GGG - tig0001000:6488-6507 Msa1336300:intergenic 50.0%
!! TACAGTGTGGGCTAGCATAG+AGG - tig0001000:6489-6508 Msa1336300:intergenic 50.0%
TGCTAGCCCACACTGTAAAG+AGG + tig0001000:6492-6511 Msa1336300:intron 50.0%
! CTTGGTTTAGGATCGTGGCA+CGG + tig0001000:6576-6595 Msa1336300:intron 50.0%
! CGAAGTTTGGAGTGAGCCAT+TGG + tig0001000:6608-6627 Msa1336300:intron 50.0%
TGGAAATATCGTGGCACGAC+AGG + tig0001000:6628-6647 Msa1336300:intron 50.0%
AATATCGTGGCACGACAGGA+AGG + tig0001000:6632-6651 Msa1336300:intron 50.0%
AGGAATCGTTGCACGATTGC+TGG + tig0001000:6652-6671 Msa1336300:intron 50.0%
ATCGTTGCACGATTGCTGGA+TGG + tig0001000:6656-6675 Msa1336300:intron 50.0%
TCGTTGCACGATTGCTGGAT+GGG + tig0001000:6657-6676 Msa1336300:intron 50.0%
GGTTGAGGATCTTTGGTGAG+AGG + tig0001000:6783-6802 Msa1336300:intron 50.0%
ATCATAGTCAGCGGCGATGA+TGG + tig0001000:7002-7021 Msa1336300:intron 50.0%
GAGAGATCTCTTTCCCCTAG+AGG + tig0001000:7219-7238 Msa1336300:intron 50.0%
!! AGCATCACTGAAGTGGACTG+AGG + tig0001000:7538-7557 Msa1336300:intron 50.0%
GAGTTTCTCTCCATTGACGG+AGG - tig0001000:7564-7583 Msa1336300:intergenic 50.0%
CAAAAATGTGCTAGGGGGCT+AGG + tig0001000:8013-8032 Msa1336300:CDS 50.0%
GGCCTGAAGCCACATACTGA+TGG + tig0001000:3984-4003 Msa1336300:CDS 55.0%
TGCAGCAACACAGGCAAAGC+TGG - tig0001000:5100-5119 Msa1336300:intergenic 55.0%
GCACCACAAAATCGCTGTGC+TGG + tig0001000:5189-5208 Msa1336300:intron 55.0%
TCGCCGACCGAAGTAACATG+CGG + tig0001000:5513-5532 Msa1336300:intron 55.0%
!! AGAGTTGGTGGGTTCAGCAG+AGG + tig0001000:5711-5730 Msa1336300:CDS 55.0%
AGCTCCTGCTGTGCTGTAGA+TGG - tig0001000:5904-5923 Msa1336300:intergenic 55.0%
CCCAAGAAGAGAGAGCAGAG+TGG - tig0001000:5936-5955 Msa1336300:intergenic 55.0%
! ATGACGAGGTGTCTTCGAGG+TGG + tig0001000:6225-6244 Msa1336300:intron 55.0%
! GGTCAAGTCAGTAAGCACCG+TGG + tig0001000:6311-6330 Msa1336300:intron 55.0%
!! ACCGTGGGTGAGAGGTATCT+AGG + tig0001000:6327-6346 Msa1336300:intron 55.0%
CCCTAGATACCTCTCACCCA+CGG - tig0001000:6331-6350 Msa1336300:intergenic 55.0%
!! CCGTGGGTGAGAGGTATCTA+GGG + tig0001000:6328-6347 Msa1336300:intron 55.0%
GTAGGGAAATCGTGGCACCT+TGG + tig0001000:6558-6577 Msa1336300:intron 55.0%
! GGCACCTTGGTTTAGGATCG+TGG + tig0001000:6571-6590 Msa1336300:intron 55.0%
CGTGCCACGATCCTAAACCA+AGG - tig0001000:6578-6597 Msa1336300:intergenic 55.0%
TGAGAGGTTCTCTTGGGCTG+AGG + tig0001000:6799-6818 Msa1336300:intron 55.0%
! ACGAGGTGTCTTCGAGGTGG+AGG + tig0001000:6228-6247 Msa1336300:intron 60.0%
! CAGTAAGCACCGTGGGTGAG+AGG + tig0001000:6319-6338 Msa1336300:intron 60.0%
TGGACTGAGGCCTCCGTCAA+TGG + tig0001000:7551-7570 Msa1336300:intron 60.0%
Chromosome Type Strat End Strand Name
tig0001000 gene 862 8072 862 ID=Msa1336300;Name=Msa1336300
tig0001000 mRNA 862 8072 862 ID=Msa1336300-mRNA-1;Parent=Msa1336300;Name=Msa1336300-mRNA-1;_AED=0.36;_eAED=0.37;_QI=100|0.4|0.33|1|0.8|0.66|6|0|458
tig0001000 exon 862 1207 862 ID=Msa1336300-mRNA-1:exon:662;Parent=Msa1336300-mRNA-1
tig0001000 exon 3019 3266 3019 ID=Msa1336300-mRNA-1:exon:663;Parent=Msa1336300-mRNA-1
tig0001000 exon 3806 4137 3806 ID=Msa1336300-mRNA-1:exon:664;Parent=Msa1336300-mRNA-1
tig0001000 exon 4492 4594 4492 ID=Msa1336300-mRNA-1:exon:665;Parent=Msa1336300-mRNA-1
tig0001000 exon 5666 5966 5666 ID=Msa1336300-mRNA-1:exon:666;Parent=Msa1336300-mRNA-1
tig0001000 exon 7926 8072 7926 ID=Msa1336300-mRNA-1:exon:667;Parent=Msa1336300-mRNA-1
tig0001000 five_prime_UTR 862 961 862 ID=Msa1336300-mRNA-1:five_prime_utr;Parent=Msa1336300-mRNA-1
tig0001000 CDS 962 1207 962 ID=Msa1336300-mRNA-1:cds;Parent=Msa1336300-mRNA-1
tig0001000 CDS 3019 3266 3019 ID=Msa1336300-mRNA-1:cds;Parent=Msa1336300-mRNA-1
tig0001000 CDS 3806 4137 3806 ID=Msa1336300-mRNA-1:cds;Parent=Msa1336300-mRNA-1
tig0001000 CDS 4492 4594 4492 ID=Msa1336300-mRNA-1:cds;Parent=Msa1336300-mRNA-1
tig0001000 CDS 5666 5966 5666 ID=Msa1336300-mRNA-1:cds;Parent=Msa1336300-mRNA-1
tig0001000 CDS 7926 8072 7926 ID=Msa1336300-mRNA-1:cds;Parent=Msa1336300-mRNA-1
Gene Sequence

>Msa1336300

ATGGCAGAATCAGTTGATATAATCGGTTGTAAATCAGTGCAAGAGTTGGCTTTGAATTCTGAAAATCTACCACCATATAATTATATCTACGATGAAGGTGGTCTTGGATTTCGTGATGCTGTTCTTCCATCAGAATCAGATATCCATATTCCAGTCGTTGACATTGGTAACCTCGCATCTCCATTTACAGCACAACAAGAGCTTCATAAACTCTACACTGCTCTCTCTTCTTGTGGCTTCTTTCAGGCAATAAACCATGGTATGACAAGCTTGTTTCTAGACAATGTGAGGGAAGTTTCAAAGCAATTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATATGCAAGGGAACCAAACAGTCATGAAGGATATGGAAATGATGTAATATTTACAGAAAATCAACGGCTTGATTGGACTGACAGAGTTTATCTCAAGGTACAGCCTGAAGATCAGAGAAATTTCAAAGTTTGGCCACAAAAACCCGATCATTTTAGGAGTATTGTACTACAATATACCGAAAGTTTAAGTCAATTATACGAAGTAATTTTAAGGGCCATGGCAAAGTCACTGACCTTGGAAGAAGACTGCTTCTTAAATGAATGTGGAGAGAGAGCTTCTATGTTTTTGAGATTCAATTACTACCCTCCATGTCCTATGCCTGATCATGTTCTAGGCCTGAAGCCACATACTGATGGATCATCTATAACTTTTGTGCTGCAAGATAAAGAGGTAGAAGGCCTCCAAGTCCTCAAAGATAATAGGTGGTTTAAAGTTCCAATAGTCCATGATGCTCTAGTGATTAATGTTGGTGATCAAATAGAGGTTGGATTGACACAACCTGATGAACTTGAATGTGATACACAGATAATGAGCAATGGAATTTTCAAGAGTCCAATACACAGAGCAGTTATAAATGCAGAAAAGGAAAGGAAGATAAAAGATAAAGATAACTTCATCAGTATCAGAAAAATGGAAGAGTTGGTGGGTTCAGCAGAGGTAGAAATAATGGGTGGTAAATCAGTGCAAGAGCTGGCATTAGATTTTGAAAATCTGCTACCAAATAATTATATCTATGATGAAGGTGGTGCTGGATTTCGTGATGCTCTTCCTTTTTCAGAATCAGATCTTCATGTTCCAGTTATTGACATTGCCAAACTCACTTCTCCATCTACAGCACAGCAGGAGCTTCATAAACTCCACTCTGCTCTCTCTTCTTGGGGTTTCTTTATGGTAATAAACCATGGTATGACAAGCTTGTTTCTTGACAAAGTGAGGGAAGTTTCAAAGCATTTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATGTGCTAGGGGGCTAGGCCATGATGATGTTGAAGGATATGGAAATGATAATTAA
Protein sequence

>Msa1336300

MAESVDIIGCKSVQELALNSENLPPYNYIYDEGGLGFRDAVLPSESDIHIPVVDIGNLASPFTAQQELHKLYTALSSCGFFQAINHGMTSLFLDNVREVSKQFFELPKEEKQKYAREPNSHEGYGNDVIFTENQRLDWTDRVYLKVQPEDQRNFKVWPQKPDHFRSIVLQYTESLSQLYEVILRAMAKSLTLEEDCFLNECGERASMFLRFNYYPPCPMPDHVLGLKPHTDGSSITFVLQDKEVEGLQVLKDNRWFKVPIVHDALVINVGDQIEVGLTQPDELECDTQIMSNGIFKSPIHRAVINAEKERKIKDKDNFISIRKMEELVGSAEVEIMGGKSVQELALDFENLLPNNYIYDEGGAGFRDALPFSESDLHVPVIDIAKLTSPSTAQQELHKLHSALSSWGFFMVINHGMTSLFLDKVREVSKHFFELPKEEKQKCARGLGHDDVEGYGNDN*