AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0804870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804870 MtrunA17_Chr5g0412701 94.737 456 24 0 1 456 1 456 0.0 865
Msa0804870 MtrunA17_Chr4g0058541 44.467 497 213 9 1 441 1 490 7.86e-129 382
Msa0804870 MtrunA17_Chr3g0116991 42.636 516 226 10 4 456 2 510 6.12e-123 367
Msa0804870 MtrunA17_Chr4g0071581 44.177 249 138 1 147 394 23 271 3.38e-58 195
Msa0804870 MtrunA17_Chr8g0370111 39.749 239 143 1 155 393 294 531 2.22e-49 177
Msa0804870 MtrunA17_Chr8g0370111 37.624 101 61 1 276 376 253 351 7.05e-11 64.3
Msa0804870 MtrunA17_Chr5g0407461 38.868 265 156 2 155 419 305 563 3.07e-49 177
Msa0804870 MtrunA17_Chr5g0407461 37.037 162 96 5 234 395 269 424 1.22e-20 94.7
Msa0804870 MtrunA17_Chr2g0298891 44.177 249 138 1 147 394 39 287 3.71e-49 171
Msa0804870 MtrunA17_Chr4g0054721 34.173 278 175 2 150 427 240 509 6.04e-45 164
Msa0804870 MtrunA17_Chr3g0086371 30.508 236 132 5 161 394 31 236 7.73e-23 97.4
Msa0804870 MtrunA17_Chr3g0086371 31.455 213 119 4 169 380 16 202 2.36e-17 81.6
Msa0804870 MtrunA17_Chr3g0086371 33.750 160 102 3 223 381 24 180 3.36e-17 81.3
Msa0804870 MtrunA17_Chr3g0086371 29.891 184 127 2 152 334 46 228 2.64e-13 69.7
Msa0804870 MtrunA17_Chr1g0165221 37.745 204 115 10 182 376 208 408 8.06e-19 89.7
Msa0804870 MtrunA17_Chr1g0165221 33.198 247 128 11 164 376 117 360 2.55e-18 88.2
Msa0804870 MtrunA17_Chr1g0165221 35.321 218 132 9 165 375 286 501 5.62e-15 77.8
Msa0804870 MtrunA17_Chr5g0439291 32.780 241 154 8 141 375 78 316 1.02e-18 89.4
Msa0804870 MtrunA17_Chr5g0439291 29.278 263 128 11 166 373 151 410 1.60e-13 73.2
Msa0804870 MtrunA17_Chr5g0439291 30.488 246 134 10 156 370 240 479 7.13e-11 64.7
Msa0804870 MtrunA17_Chr8g0363851 34.375 224 142 5 162 383 617 837 3.91e-18 87.8
Msa0804870 MtrunA17_Chr8g0363851 31.915 235 131 6 161 369 546 777 7.31e-16 80.5
Msa0804870 MtrunA17_Chr8g0363851 30.204 245 156 6 158 390 660 901 1.70e-13 73.2
Msa0804870 MtrunA17_Chr8g0363851 31.604 212 111 9 159 367 455 635 2.43e-11 66.2
Msa0804870 MtrunA17_Chr7g0217081 33.624 229 142 10 152 372 89 315 6.36e-18 86.7
Msa0804870 MtrunA17_Chr1g0203251 38.342 193 109 9 166 351 523 712 1.61e-17 85.9
Msa0804870 MtrunA17_Chr1g0203251 27.068 266 134 8 166 372 374 638 9.30e-14 73.9
Msa0804870 MtrunA17_Chr1g0203251 28.019 207 124 5 191 372 257 463 1.47e-12 70.1
Msa0804870 MtrunA17_Chr1g0165211 35.533 197 117 9 183 372 300 493 3.68e-17 84.7
Msa0804870 MtrunA17_Chr1g0165211 34.234 222 137 9 166 380 330 549 1.48e-16 82.8
Msa0804870 MtrunA17_Chr1g0165211 28.315 279 140 11 153 376 178 451 2.18e-12 69.7
Msa0804870 MtrunA17_Chr2g0304481 34.562 217 133 9 164 373 460 674 5.40e-17 84.0
Msa0804870 MtrunA17_Chr2g0304481 29.286 280 178 11 105 370 230 503 1.73e-15 79.3
Msa0804870 MtrunA17_Chr1g0151041 34.091 220 136 9 171 383 181 398 1.32e-16 82.8
Msa0804870 MtrunA17_Chr1g0151041 30.964 197 129 7 180 370 285 480 3.97e-12 68.6
Msa0804870 MtrunA17_Chr8g0357151 36.923 195 115 8 182 370 206 398 2.58e-16 82.0
Msa0804870 MtrunA17_Chr8g0357151 36.150 213 127 9 165 370 260 470 3.52e-16 81.6
Msa0804870 MtrunA17_Chr8g0357151 39.086 197 106 9 183 370 111 302 4.09e-16 81.3
Msa0804870 MtrunA17_Chr8g0357151 34.112 214 128 9 166 370 141 350 2.42e-15 79.0
Msa0804870 MtrunA17_Chr8g0357151 34.764 233 126 12 165 372 404 635 1.82e-13 72.8
Msa0804870 MtrunA17_Chr7g0215011 32.287 223 129 13 172 380 176 390 3.04e-16 81.6
Msa0804870 MtrunA17_Chr7g0215011 30.126 239 153 9 139 370 76 307 8.26e-11 64.3
Msa0804870 MtrunA17_Chr3g0089591 35.263 190 96 5 181 367 563 728 3.67e-16 81.6
Msa0804870 MtrunA17_Chr3g0089591 34.356 163 103 4 160 319 567 728 2.53e-12 69.3
Msa0804870 MtrunA17_Chr8g0357191 32.911 237 128 10 164 370 223 458 6.23e-16 80.9
Msa0804870 MtrunA17_Chr8g0357191 31.557 244 146 11 145 376 112 346 1.26e-15 79.7
Msa0804870 MtrunA17_Chr7g0232131 36.364 220 106 12 166 376 296 490 1.66e-15 79.3
Msa0804870 MtrunA17_Chr7g0232131 27.744 328 149 13 147 389 80 404 6.23e-14 74.3
Msa0804870 MtrunA17_Chr1g0165141 31.429 245 127 11 166 375 263 501 1.92e-15 79.3
Msa0804870 MtrunA17_Chr1g0165141 29.536 237 136 9 166 372 143 378 6.27e-14 74.3
Msa0804870 MtrunA17_Chr2g0317831 27.160 243 152 2 139 358 35 275 2.15e-15 78.6
Msa0804870 MtrunA17_Chr3g0102901 33.010 206 131 7 152 351 327 531 3.28e-15 78.6
Msa0804870 MtrunA17_Chr7g0241921 31.628 215 133 8 166 370 373 583 3.56e-15 78.2
Msa0804870 MtrunA17_Chr1g0165901 34.389 221 132 11 166 376 206 423 3.89e-15 78.2
Msa0804870 MtrunA17_Chr1g0165901 34.906 212 129 9 166 370 374 583 8.02e-15 77.4
Msa0804870 MtrunA17_Chr1g0165901 33.333 207 125 11 180 376 172 375 5.46e-13 71.6
Msa0804870 MtrunA17_Chr7g0217061 31.837 245 151 11 133 370 69 304 4.58e-15 77.8
Msa0804870 MtrunA17_Chr7g0217061 35.119 168 102 7 210 372 117 282 6.63e-14 74.3
Msa0804870 MtrunA17_Chr3g0105881 29.562 274 174 8 131 398 116 376 4.94e-15 76.6
Msa0804870 MtrunA17_Chr2g0304331 32.636 239 128 9 166 373 484 720 6.90e-15 77.4
Msa0804870 MtrunA17_Chr2g0304331 29.150 247 130 8 147 349 282 527 3.64e-14 75.1
Msa0804870 MtrunA17_Chr8g0374531 31.336 217 131 8 165 369 566 776 7.26e-15 77.0
Msa0804870 MtrunA17_Chr2g0304281 36.126 191 94 7 166 352 438 604 1.17e-14 76.6
Msa0804870 MtrunA17_Chr2g0304281 29.707 239 131 8 168 370 266 503 1.50e-13 73.2
Msa0804870 MtrunA17_Chr8g0357171 31.604 212 136 9 166 370 178 387 1.33e-14 76.6
Msa0804870 MtrunA17_Chr8g0357171 35.052 194 114 8 187 372 128 317 9.15e-14 73.9
Msa0804870 MtrunA17_Chr5g0436861 27.465 284 139 10 166 382 162 445 2.04e-14 75.9
Msa0804870 MtrunA17_Chr8g0362961 30.435 253 115 9 179 372 420 670 2.28e-14 75.9
Msa0804870 MtrunA17_Chr6g0464171 32.558 215 131 8 166 370 397 607 2.39e-14 75.9
Msa0804870 MtrunA17_Chr6g0464171 35.938 192 109 10 166 348 445 631 1.60e-11 66.6
Msa0804870 MtrunA17_Chr2g0334191 31.776 214 137 9 164 370 225 436 2.95e-14 75.5
Msa0804870 MtrunA17_Chr5g0447001 33.333 210 134 6 166 370 337 545 3.35e-14 75.1
Msa0804870 MtrunA17_Chr5g0447001 33.333 198 124 7 182 373 306 501 4.98e-14 74.7
Msa0804870 MtrunA17_Chr5g0447001 28.470 281 166 13 166 415 144 420 6.36e-13 71.2
Msa0804870 MtrunA17_Chr5g0429421 29.412 289 171 13 111 373 33 314 3.88e-14 75.1
Msa0804870 MtrunA17_Chr4g0052921 31.535 241 131 9 165 373 265 503 4.76e-14 74.7
Msa0804870 MtrunA17_Chr4g0052921 32.444 225 138 11 154 370 618 836 4.14e-12 68.6
Msa0804870 MtrunA17_Chr3g0089471 32.780 241 122 9 134 367 518 725 6.11e-14 74.7
Msa0804870 MtrunA17_Chr1g0189871 33.178 214 134 9 164 370 375 586 9.46e-14 73.9
Msa0804870 MtrunA17_Chr1g0189871 32.877 219 137 9 165 375 472 688 1.13e-13 73.6
Msa0804870 MtrunA17_Chr8g0363891 28.070 285 134 7 161 374 81 365 1.00e-13 73.6
Msa0804870 MtrunA17_Chr8g0363891 30.041 243 152 8 162 390 199 437 7.00e-13 70.9
Msa0804870 MtrunA17_Chr8g0363891 31.068 206 137 5 165 367 61 264 3.78e-11 65.5
Msa0804870 MtrunA17_Chr3g0128731 32.719 217 110 9 188 370 294 508 1.07e-13 73.6
Msa0804870 MtrunA17_Chr3g0128731 29.368 269 125 10 166 373 223 487 1.11e-13 73.6
Msa0804870 MtrunA17_Chr3g0128731 32.524 206 128 10 166 362 175 378 1.86e-13 72.8
Msa0804870 MtrunA17_Chr3g0128731 32.086 187 118 8 193 373 399 582 1.41e-11 67.0
Msa0804870 MtrunA17_Chr3g0128731 25.954 262 137 9 166 370 295 556 3.82e-11 65.5
Msa0804870 MtrunA17_Chr4g0005201 31.019 216 140 9 178 386 157 370 1.29e-13 73.2
Msa0804870 MtrunA17_Chr4g0005201 32.075 212 112 10 168 372 98 284 3.28e-12 68.9
Msa0804870 MtrunA17_Chr5g0419721 36.054 147 85 6 225 367 118 259 1.65e-13 73.2
Msa0804870 MtrunA17_Chr7g0237821 29.762 336 195 15 43 365 224 531 1.69e-13 73.2
Msa0804870 MtrunA17_Chr7g0237821 31.481 216 138 9 165 372 184 397 6.02e-13 71.2
Msa0804870 MtrunA17_Chr7g0237821 34.404 218 131 10 165 373 88 302 7.69e-13 70.9
Msa0804870 MtrunA17_Chr7g0237821 29.362 235 137 7 165 370 425 659 4.09e-12 68.6
Msa0804870 MtrunA17_Chr7g0237821 33.953 215 133 9 165 372 233 445 1.75e-11 66.6
Msa0804870 MtrunA17_Chr8g0366461 33.962 212 132 8 166 370 391 601 2.23e-13 72.8
Msa0804870 MtrunA17_Chr7g0233881 34.091 220 134 10 147 357 83 300 2.81e-13 72.4
Msa0804870 MtrunA17_Chr1g0169841 31.120 241 135 10 165 375 144 383 2.92e-13 72.4
Msa0804870 MtrunA17_Chr7g0215641 31.535 241 142 14 154 380 143 374 3.17e-13 72.0
Msa0804870 MtrunA17_Chr4g0051961 34.211 190 119 6 188 372 257 445 3.28e-13 72.0
Msa0804870 MtrunA17_Chr7g0215671 36.207 174 105 5 204 373 114 285 4.82e-13 71.2
Msa0804870 MtrunA17_Chr3g0095201 32.836 201 100 8 152 322 405 600 5.32e-13 71.6
Msa0804870 MtrunA17_Chr1g0204461 30.085 236 131 9 166 370 150 382 5.54e-13 71.2
Msa0804870 MtrunA17_Chr1g0204461 28.352 261 172 12 128 377 63 319 6.60e-13 71.2
Msa0804870 MtrunA17_Chr1g0204461 29.717 212 140 9 166 370 293 502 1.30e-12 70.1
Msa0804870 MtrunA17_Chr1g0204461 29.524 210 118 9 166 370 246 430 2.55e-11 66.2
Msa0804870 MtrunA17_Chr4g0017251 30.651 261 122 11 166 370 115 372 6.87e-13 71.2
Msa0804870 MtrunA17_Chr4g0017251 30.396 227 146 11 154 372 80 302 5.29e-11 65.1
Msa0804870 MtrunA17_Chr3g0089961 46.591 88 46 1 278 365 592 678 9.32e-13 70.5
Msa0804870 MtrunA17_Chr5g0440221 31.222 221 139 9 157 370 130 344 1.03e-12 70.9
Msa0804870 MtrunA17_Chr7g0257621 30.709 254 140 11 152 372 112 362 1.08e-12 70.5
Msa0804870 MtrunA17_Chr8g0362931 28.750 240 139 7 164 372 205 443 1.17e-12 70.5
Msa0804870 MtrunA17_Chr8g0362931 27.820 266 152 9 135 370 89 344 5.85e-11 65.1
Msa0804870 MtrunA17_Chr7g0250381 31.884 207 131 7 170 367 63 268 1.37e-12 70.1
Msa0804870 MtrunA17_Chr5g0408581 32.864 213 133 9 166 370 397 607 1.38e-12 70.1
Msa0804870 MtrunA17_Chr2g0296601 33.491 212 132 9 157 361 125 334 1.50e-12 70.1
Msa0804870 MtrunA17_Chr2g0296601 29.046 241 137 9 165 373 253 491 3.95e-12 68.9
Msa0804870 MtrunA17_Chr2g0296601 31.818 242 143 12 148 370 586 824 1.19e-11 67.4
Msa0804870 MtrunA17_Chr7g0244931 31.466 232 148 10 151 372 250 480 1.53e-12 70.1
Msa0804870 MtrunA17_Chr7g0244931 29.630 216 142 8 166 372 218 432 5.64e-11 65.1
Msa0804870 MtrunA17_Chr7g0244931 32.418 182 117 6 175 351 179 359 5.74e-11 65.1
Msa0804870 MtrunA17_Chr1g0190411 29.020 255 149 11 152 375 78 331 1.62e-12 70.1
Msa0804870 MtrunA17_Chr4g0019041 35.294 170 103 7 173 336 375 543 2.05e-12 69.7
Msa0804870 MtrunA17_Chr3g0089211 45.361 97 51 2 271 367 630 724 2.15e-12 69.7
Msa0804870 MtrunA17_Chr3g0089991 44.330 97 52 2 271 367 587 681 2.17e-12 69.7
Msa0804870 MtrunA17_Chr3g0140361 35.000 180 107 9 198 370 151 327 2.21e-12 69.3
Msa0804870 MtrunA17_Chr6g0464161 31.628 215 133 8 166 370 126 336 2.22e-12 69.3
Msa0804870 MtrunA17_Chr6g0464161 34.375 192 112 10 166 348 174 360 9.57e-11 64.3
Msa0804870 MtrunA17_Chr2g0284151 31.746 189 98 7 164 322 236 423 2.35e-12 69.3
Msa0804870 MtrunA17_Chr7g0250471 27.758 281 145 11 152 375 143 422 2.90e-12 69.3
Msa0804870 MtrunA17_Chr1g0197051 31.532 222 143 9 178 392 502 721 3.33e-12 68.9
Msa0804870 MtrunA17_Chr3g0089541 44.330 97 52 2 271 367 586 680 3.39e-12 68.9
Msa0804870 MtrunA17_Chr2g0285811 33.854 192 97 7 187 372 126 293 3.50e-12 68.2
Msa0804870 MtrunA17_Chr2g0285811 31.455 213 117 8 166 373 154 342 2.48e-11 65.5
Msa0804870 MtrunA17_Chr7g0261901 30.882 204 111 8 155 352 316 495 3.51e-12 68.6
Msa0804870 MtrunA17_Chr4g0035464 31.019 216 138 10 166 372 110 323 3.83e-12 68.6
Msa0804870 MtrunA17_Chr2g0296591 33.175 211 134 7 157 361 125 334 4.04e-12 68.9
Msa0804870 MtrunA17_Chr2g0296591 31.818 242 143 12 148 370 586 824 6.19e-12 68.2
Msa0804870 MtrunA17_Chr2g0296591 28.631 241 138 9 165 373 253 491 7.70e-12 67.8
Msa0804870 MtrunA17_Chr6g0464191 30.556 216 140 9 166 373 11 224 4.23e-12 67.8
Msa0804870 MtrunA17_Chr2g0312651 33.500 200 124 9 178 370 392 589 5.02e-12 68.6
Msa0804870 MtrunA17_Chr5g0408611 35.260 173 100 9 157 322 428 595 5.22e-12 68.2
Msa0804870 MtrunA17_Chr5g0408611 29.412 221 130 10 166 370 385 595 9.13e-11 64.3
Msa0804870 MtrunA17_Chr8g0367351 35.211 213 123 10 166 366 440 649 5.28e-12 68.2
Msa0804870 MtrunA17_Chr8g0372351 33.491 212 111 8 188 370 128 338 6.53e-12 67.0
Msa0804870 MtrunA17_Chr8g0372351 28.947 228 105 9 165 361 152 353 4.12e-11 64.3
Msa0804870 MtrunA17_Chr2g0284191 31.016 187 98 7 166 322 273 458 6.78e-12 67.8
Msa0804870 MtrunA17_Chr5g0437741 31.336 217 132 12 168 370 110 323 7.32e-12 67.8
Msa0804870 MtrunA17_Chr5g0437741 30.522 249 157 13 140 375 107 352 3.76e-11 65.5
Msa0804870 MtrunA17_Chr0c09g0493531 32.086 187 96 7 166 322 280 465 7.50e-12 67.8
Msa0804870 MtrunA17_Chr1g0196011 32.984 191 112 9 166 345 221 406 7.78e-12 67.8
Msa0804870 MtrunA17_Chr8g0372311 33.491 212 111 8 188 370 128 338 7.81e-12 66.6
Msa0804870 MtrunA17_Chr8g0372311 30.806 211 90 8 181 361 169 353 1.11e-11 66.2
Msa0804870 MtrunA17_Chr3g0089761 43.299 97 53 2 271 367 583 677 7.82e-12 67.8
Msa0804870 MtrunA17_Chr2g0282831 31.628 215 115 8 186 370 102 314 7.83e-12 67.8
Msa0804870 MtrunA17_Chr4g0073641 31.280 211 115 8 166 370 371 557 9.04e-12 67.4
Msa0804870 MtrunA17_Chr7g0250491 30.396 227 146 8 159 375 89 313 9.56e-12 67.4
Msa0804870 MtrunA17_Chr2g0333171 32.287 223 139 10 165 378 189 408 9.62e-12 67.0
Msa0804870 MtrunA17_Chr1g0165191 32.093 215 137 9 166 373 286 498 9.62e-12 67.4
Msa0804870 MtrunA17_Chr4g0012841 28.205 273 136 13 97 338 213 456 1.02e-11 67.4
Msa0804870 MtrunA17_Chr4g0012841 30.085 236 132 9 166 370 210 443 3.34e-11 65.9
Msa0804870 MtrunA17_Chr7g0233851 29.362 235 135 7 166 370 16 249 1.30e-11 66.2
Msa0804870 MtrunA17_Chr2g0300201 37.349 166 92 9 166 322 445 607 1.32e-11 67.0
Msa0804870 MtrunA17_Chr2g0300201 31.163 215 134 8 166 370 397 607 1.94e-11 66.6
Msa0804870 MtrunA17_Chr1g0165951 31.390 223 122 10 180 372 104 325 1.43e-11 67.0
Msa0804870 MtrunA17_Chr5g0442151 29.231 195 103 7 166 351 406 574 1.49e-11 67.0
Msa0804870 MtrunA17_Chr7g0215061 33.721 172 87 5 187 355 124 271 1.54e-11 66.6
Msa0804870 MtrunA17_Chr6g0487031 29.375 320 172 17 105 381 217 525 1.57e-11 66.6
Msa0804870 MtrunA17_Chr3g0089781 44.444 90 49 1 278 367 589 677 1.65e-11 66.6
Msa0804870 MtrunA17_Chr3g0089501 44.444 90 49 1 278 367 587 675 1.92e-11 66.6
Msa0804870 MtrunA17_Chr8g0363111 33.333 162 99 7 221 375 100 259 2.10e-11 66.2
Msa0804870 MtrunA17_Chr8g0363111 32.086 187 96 7 166 322 411 596 5.61e-11 65.1
Msa0804870 MtrunA17_Chr8g0372321 34.314 204 104 8 188 362 128 330 2.13e-11 65.1
Msa0804870 MtrunA17_Chr3g0089651 43.299 97 53 2 271 367 587 681 2.15e-11 66.6
Msa0804870 MtrunA17_Chr7g0231531 26.452 310 143 11 147 372 80 388 2.19e-11 65.9
Msa0804870 MtrunA17_Chr7g0231531 31.163 215 118 9 164 372 294 484 3.96e-11 65.1
Msa0804870 MtrunA17_Chr3g0089601 45.556 90 48 1 278 367 587 675 2.21e-11 66.2
Msa0804870 MtrunA17_Chr5g0408511 30.516 213 138 10 166 370 394 604 2.23e-11 66.2
Msa0804870 MtrunA17_Chr3g0082131 40.860 93 54 1 274 366 593 684 2.32e-11 66.2
Msa0804870 MtrunA17_Chr4g0019371 36.538 156 93 6 173 322 377 532 2.35e-11 66.2
Msa0804870 MtrunA17_Chr3g0091461 32.258 217 129 10 166 372 123 331 2.41e-11 66.2
Msa0804870 MtrunA17_Chr3g0089251 44.330 97 52 2 271 367 612 706 2.42e-11 66.2
Msa0804870 MtrunA17_Chr5g0408431 30.137 219 109 9 158 334 411 627 2.46e-11 66.2
Msa0804870 MtrunA17_Chr8g0348931 30.688 189 122 5 242 423 555 741 2.67e-11 66.2
Msa0804870 MtrunA17_Chr3g0089911 45.882 85 45 1 278 362 588 671 2.69e-11 65.9
Msa0804870 MtrunA17_Chr1g0164581 40.860 93 54 1 274 366 569 660 2.70e-11 66.2
Msa0804870 MtrunA17_Chr7g0217041 30.556 252 142 8 166 385 159 409 2.78e-11 65.9
Msa0804870 MtrunA17_Chr3g0089421 44.444 90 49 1 278 367 591 679 2.93e-11 65.9
Msa0804870 MtrunA17_Chr3g0144581 33.158 190 99 7 171 356 124 289 3.04e-11 65.9
Msa0804870 MtrunA17_Chr4g0034221 31.280 211 131 10 166 370 30 232 3.08e-11 65.9
Msa0804870 MtrunA17_Chr5g0418721 31.771 192 120 8 188 370 92 281 3.14e-11 64.3
Msa0804870 MtrunA17_Chr7g0232461 32.340 235 146 11 146 370 82 313 3.15e-11 65.9
Msa0804870 MtrunA17_Chr6g0463291 30.204 245 123 9 175 372 378 621 3.19e-11 65.9
Msa0804870 MtrunA17_Chr4g0014151 30.909 220 137 10 166 375 276 490 3.31e-11 65.9
Msa0804870 MtrunA17_Chr7g0216261 31.878 229 141 10 188 404 16 241 3.92e-11 65.1
Msa0804870 MtrunA17_Chr3g0129391 29.482 251 162 12 167 405 357 604 4.00e-11 65.5
Msa0804870 MtrunA17_Chr2g0329021 28.641 206 117 8 188 387 104 285 4.01e-11 64.3
Msa0804870 MtrunA17_Chr7g0217101 37.500 128 74 6 249 372 1 126 4.02e-11 65.1
Msa0804870 MtrunA17_Chr3g0090431 38.739 111 63 3 257 367 444 549 4.08e-11 65.5
Msa0804870 MtrunA17_Chr2g0314001 32.258 217 128 10 180 382 275 486 4.20e-11 65.5
Msa0804870 MtrunA17_Chr2g0314031 32.719 217 127 10 180 382 271 482 4.66e-11 65.5
Msa0804870 MtrunA17_Chr1g0159871 31.401 207 126 9 180 372 202 406 4.67e-11 65.1
Msa0804870 MtrunA17_Chr1g0165261 30.000 200 132 8 182 375 6 203 5.01e-11 64.7
Msa0804870 MtrunA17_Chr8g0363371 30.126 239 155 9 166 398 199 431 5.01e-11 65.1
Msa0804870 MtrunA17_Chr7g0215651 35.294 170 103 7 187 351 105 272 5.57e-11 65.1
Msa0804870 MtrunA17_Chr7g0215631 32.850 207 107 10 152 351 123 304 5.80e-11 64.7
Msa0804870 MtrunA17_Chr5g0440191 31.884 207 132 9 171 370 141 345 6.52e-11 65.1
Msa0804870 MtrunA17_Chr5g0435331 27.037 270 142 10 155 370 268 536 7.23e-11 64.7
Msa0804870 MtrunA17_Chr3g0092241 43.333 90 50 1 278 367 589 677 7.55e-11 64.7
Msa0804870 MtrunA17_Chr3g0092261 43.333 90 50 1 278 367 633 721 8.43e-11 64.7
Msa0804870 MtrunA17_Chr3g0089811 44.444 90 49 1 278 367 589 677 8.59e-11 64.7
Msa0804870 MtrunA17_Chr5g0437331 31.100 209 123 8 164 358 268 469 8.95e-11 64.3
Msa0804870 MtrunA17_Chr5g0407901 30.374 214 136 7 166 370 125 334 9.20e-11 63.2
Msa0804870 MtrunA17_Chr2g0280191 30.317 221 139 10 166 375 317 533 9.35e-11 64.3
Msa0804870 MtrunA17_Chr4g0019801 32.338 201 115 10 163 347 304 499 9.38e-11 64.3
Msa0804870 MtrunA17_Chr3g0089441 42.268 97 54 2 271 367 89 183 9.52e-11 64.3
Msa0804870 MtrunA17_Chr3g0116231 29.614 233 135 9 165 370 133 363 9.65e-11 64.3
Msa0804870 MtrunA17_Chr1g0204931 27.074 229 112 11 195 370 82 308 9.93e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804870 AT1G12970.1 48.172 465 215 5 10 456 8 464 3.22e-151 438
Msa0804870 AT3G26500.1 45.591 465 230 5 8 452 6 467 1.98e-138 406
Msa0804870 AT5G05850.1 44.834 513 219 9 1 456 1 506 1.14e-126 377
Msa0804870 AT3G11330.1 43.898 508 224 10 1 456 1 499 4.44e-123 368
Msa0804870 AT4G26050.1 40.441 272 161 1 135 405 42 313 5.16e-59 198
Msa0804870 AT2G19330.1 43.548 248 139 1 148 394 58 305 5.93e-57 193
Msa0804870 AT4G29880.1 42.339 248 142 1 148 394 51 298 4.56e-52 180
Msa0804870 AT4G35470.1 41.772 237 137 1 155 391 274 509 1.49e-51 183
Msa0804870 AT4G35470.1 40.132 152 84 3 229 376 229 377 1.99e-17 85.1
Msa0804870 AT4G35470.2 41.631 233 135 1 155 387 274 505 1.25e-49 177
Msa0804870 AT4G35470.2 40.132 152 84 3 229 376 229 377 2.42e-17 85.1
Msa0804870 AT2G17440.1 40.506 237 140 1 155 391 258 493 2.71e-43 160
Msa0804870 AT2G17440.1 34.104 173 111 2 152 322 301 472 3.73e-20 93.6
Msa0804870 AT2G17440.1 38.514 148 88 2 229 376 217 361 3.34e-19 90.5
Msa0804870 AT3G15410.2 33.636 220 139 3 155 372 79 293 1.18e-25 110
Msa0804870 AT3G15410.2 32.759 174 111 4 218 390 73 241 1.81e-13 73.2
Msa0804870 AT3G15410.2 27.413 259 145 6 155 372 143 399 4.86e-12 68.6
Msa0804870 AT3G15410.2 31.410 156 94 2 266 421 51 193 3.46e-11 65.9
Msa0804870 AT3G15410.1 33.636 220 139 3 155 372 73 287 1.20e-25 110
Msa0804870 AT3G15410.1 32.759 174 111 4 218 390 67 235 2.05e-13 72.8
Msa0804870 AT3G15410.1 27.413 259 145 6 155 372 137 393 5.56e-12 68.2
Msa0804870 AT3G15410.1 31.410 156 94 2 266 421 45 187 3.34e-11 65.9
Msa0804870 AT5G07910.1 29.839 248 145 5 155 400 26 246 5.24e-20 89.7
Msa0804870 AT5G07910.1 29.651 172 98 3 223 372 25 195 2.83e-14 73.2
Msa0804870 AT2G30105.1 30.638 235 151 7 169 398 125 352 2.95e-18 86.7
Msa0804870 AT2G30105.1 34.559 136 87 2 167 301 196 330 1.56e-15 78.6
Msa0804870 AT2G24130.1 36.279 215 126 9 165 370 337 549 1.52e-17 86.3
Msa0804870 AT2G24130.2 36.279 215 126 9 165 370 352 564 1.70e-17 85.9
Msa0804870 AT5G63930.1 33.051 236 127 11 165 370 377 611 6.97e-17 84.3
Msa0804870 AT5G63930.2 33.051 236 127 11 165 370 313 547 8.50e-17 84.0
Msa0804870 AT1G04210.1 32.031 256 144 8 131 372 19 258 1.28e-16 83.2
Msa0804870 AT1G12460.2 34.921 189 111 7 146 322 135 323 1.00e-15 80.1
Msa0804870 AT1G69550.1 36.967 211 124 9 165 368 876 1084 1.07e-15 80.5
Msa0804870 AT1G69550.1 35.270 241 122 12 165 374 924 1161 1.91e-15 79.7
Msa0804870 AT1G69550.1 38.172 186 88 8 183 353 1039 1212 8.62e-15 77.8
Msa0804870 AT1G69550.1 33.953 215 113 8 165 374 828 1018 4.54e-12 68.9
Msa0804870 AT1G12460.1 34.921 189 111 7 146 322 274 462 1.65e-15 79.7
Msa0804870 AT1G12460.1 31.602 231 146 11 156 376 194 422 9.02e-11 64.7
Msa0804870 AT5G17680.1 35.468 203 115 9 177 368 812 1009 1.68e-15 79.7
Msa0804870 AT5G17680.2 35.468 203 115 9 177 368 813 1010 1.74e-15 79.7
Msa0804870 AT3G24240.1 35.211 213 129 9 165 370 458 668 3.08e-15 79.0
Msa0804870 AT3G24240.1 30.189 212 119 7 164 370 385 572 1.16e-12 70.9
Msa0804870 AT3G56370.1 31.933 238 134 11 165 376 255 490 6.41e-15 77.8
Msa0804870 AT3G56370.1 32.301 226 121 9 154 372 75 275 2.87e-13 72.8
Msa0804870 AT5G56040.2 30.342 234 134 7 165 370 329 561 6.96e-15 77.8
Msa0804870 AT5G27060.3 29.119 261 154 9 119 372 65 301 9.42e-15 77.4
Msa0804870 AT5G27060.1 29.119 261 154 9 119 372 65 301 9.42e-15 77.4
Msa0804870 AT5G27060.2 29.119 261 154 9 119 372 66 302 9.43e-15 77.4
Msa0804870 AT3G51740.1 31.679 262 154 13 151 399 167 416 1.11e-14 77.0
Msa0804870 AT3G51740.1 29.461 241 135 10 168 375 88 326 8.99e-11 64.7
Msa0804870 AT2G26330.1 33.921 227 115 11 165 383 228 427 1.27e-14 77.0
Msa0804870 AT5G56040.1 30.342 234 134 7 165 370 329 561 1.46e-14 76.6
Msa0804870 AT1G35710.1 31.683 202 132 6 155 351 539 739 3.91e-14 75.5
Msa0804870 AT5G61480.1 30.332 211 118 8 165 370 145 331 7.11e-14 74.7
Msa0804870 AT5G07180.2 31.076 251 138 10 155 373 30 277 8.26e-14 74.3
Msa0804870 AT5G07180.2 30.769 208 134 8 178 377 6 211 9.97e-11 64.7
Msa0804870 AT1G62950.1 34.518 197 115 9 139 322 272 467 8.86e-14 74.3
Msa0804870 AT4G39270.1 36.458 192 110 11 151 333 127 315 1.30e-13 73.9
Msa0804870 AT1G27180.1 29.268 246 145 7 150 368 914 1157 1.44e-13 73.9
Msa0804870 AT5G07180.1 31.746 252 135 12 155 373 126 373 1.50e-13 73.6
Msa0804870 AT1G27180.7 29.268 246 145 7 150 368 576 819 1.65e-13 73.6
Msa0804870 AT1G27180.6 29.268 246 145 7 150 368 576 819 1.65e-13 73.6
Msa0804870 AT1G27180.4 29.268 246 145 7 150 368 576 819 1.65e-13 73.6
Msa0804870 AT1G27180.2 29.268 246 145 7 150 368 752 995 1.69e-13 73.6
Msa0804870 AT1G27180.3 29.614 233 136 6 162 368 765 995 1.69e-13 73.6
Msa0804870 AT1G27180.3 27.556 225 158 5 152 373 825 1047 6.94e-11 65.1
Msa0804870 AT4G39270.6 36.458 192 110 11 151 333 127 315 1.73e-13 73.2
Msa0804870 AT4G39270.9 36.458 192 110 11 151 333 127 315 1.73e-13 73.2
Msa0804870 AT4G39270.4 36.458 192 110 11 151 333 127 315 1.73e-13 73.2
Msa0804870 AT5G48940.1 35.859 198 116 10 183 372 405 599 1.79e-13 73.6
Msa0804870 AT5G48940.1 33.191 235 146 10 164 389 458 690 3.52e-12 69.3
Msa0804870 AT5G48940.1 25.697 323 171 15 151 415 112 423 4.82e-11 65.9
Msa0804870 AT4G39270.8 36.458 192 110 11 151 333 127 315 2.00e-13 72.8
Msa0804870 AT4G39270.7 36.458 192 110 11 151 333 127 315 2.00e-13 72.8
Msa0804870 AT4G39270.5 36.458 192 110 11 151 333 127 315 2.00e-13 72.8
Msa0804870 AT4G39270.3 36.458 192 110 11 151 333 127 315 2.00e-13 72.8
Msa0804870 AT4G39270.10 36.458 192 110 11 151 333 127 315 2.00e-13 72.8
Msa0804870 AT4G39270.2 36.458 192 110 11 151 333 127 315 2.00e-13 73.2
Msa0804870 AT1G27180.5 29.268 246 145 7 150 368 750 993 2.05e-13 73.2
Msa0804870 AT1G27180.8 29.268 246 145 7 150 368 750 993 2.05e-13 73.2
Msa0804870 AT5G49660.1 31.405 242 137 12 151 372 72 304 2.21e-13 73.2
Msa0804870 AT5G65710.1 29.123 285 160 13 143 390 68 347 2.73e-13 72.8
Msa0804870 AT4G39400.1 30.894 246 157 12 171 405 363 606 4.95e-13 72.0
Msa0804870 AT3G28040.1 33.945 218 129 11 165 372 287 499 5.90e-13 71.6
Msa0804870 AT1G71400.1 31.799 239 125 11 166 370 175 409 6.00e-13 71.6
Msa0804870 AT1G71400.1 33.503 197 118 10 182 370 97 288 3.81e-12 68.9
Msa0804870 AT4G20140.1 31.535 241 131 9 165 373 255 493 6.23e-13 71.6
Msa0804870 AT4G20140.1 30.579 242 140 13 165 395 615 839 5.49e-11 65.5
Msa0804870 AT3G23110.1 29.389 262 130 7 165 372 152 412 8.46e-13 71.2
Msa0804870 AT5G62230.1 29.218 243 136 10 165 375 135 373 1.15e-12 70.9
Msa0804870 AT5G62230.1 28.745 247 156 11 148 377 62 305 2.38e-12 69.7
Msa0804870 AT5G07280.1 32.093 215 94 7 165 351 596 786 1.28e-12 70.9
Msa0804870 AT5G07280.1 32.110 218 127 10 165 375 488 691 5.57e-11 65.5
Msa0804870 AT5G46330.2 28.889 225 125 9 157 375 132 327 1.63e-12 70.5
Msa0804870 AT5G46330.2 29.885 261 124 11 166 370 161 418 7.65e-11 65.1
Msa0804870 AT5G46330.2 31.008 258 122 11 167 370 330 585 7.65e-11 65.1
Msa0804870 AT5G46330.1 28.889 225 125 9 157 375 132 327 1.63e-12 70.5
Msa0804870 AT5G46330.1 29.885 261 124 11 166 370 161 418 7.65e-11 65.1
Msa0804870 AT5G46330.1 31.008 258 122 11 167 370 330 585 7.65e-11 65.1
Msa0804870 AT4G13920.1 34.466 206 120 10 174 367 79 281 1.83e-12 70.1
Msa0804870 AT4G13920.1 29.670 273 140 11 120 370 79 321 5.58e-12 68.6
Msa0804870 AT4G26540.1 30.769 247 138 10 155 370 315 559 1.90e-12 70.1
Msa0804870 AT4G26540.1 28.622 283 165 12 165 415 133 410 5.25e-12 68.9
Msa0804870 AT5G62230.2 28.745 247 156 11 148 377 62 305 2.04e-12 70.1
Msa0804870 AT5G62230.2 29.412 238 132 10 165 370 135 368 3.64e-12 69.3
Msa0804870 AT5G62230.2 31.604 212 115 9 164 370 230 416 6.55e-12 68.6
Msa0804870 AT1G73066.1 33.491 212 128 9 168 370 260 467 2.07e-12 69.7
Msa0804870 AT1G17750.1 30.932 236 148 10 150 375 460 690 2.07e-12 70.1
Msa0804870 AT5G06940.1 30.806 211 117 8 166 370 116 303 2.09e-12 70.1
Msa0804870 AT3G11010.2 30.522 249 131 9 166 373 210 457 2.13e-12 70.1
Msa0804870 AT3G11010.3 30.522 249 131 9 166 373 186 433 2.24e-12 69.7
Msa0804870 AT3G11010.1 30.522 249 131 9 166 373 147 394 2.27e-12 69.7
Msa0804870 AT3G11010.5 30.522 249 131 9 166 373 123 370 2.38e-12 69.7
Msa0804870 AT3G23120.1 30.841 214 139 7 166 372 127 338 2.55e-12 69.7
Msa0804870 AT1G65380.1 35.354 198 121 7 157 349 300 495 2.83e-12 69.3
Msa0804870 AT2G24230.1 28.293 205 142 5 152 352 94 297 4.29e-12 68.9
Msa0804870 AT1G27170.1 28.800 250 139 6 155 367 735 982 5.53e-12 68.9
Msa0804870 AT1G27170.1 24.906 265 150 7 157 373 772 1035 1.17e-11 67.8
Msa0804870 AT1G27170.2 28.800 250 139 6 155 367 735 982 5.88e-12 68.6
Msa0804870 AT1G27170.2 24.906 265 150 7 157 373 772 1035 1.24e-11 67.8
Msa0804870 AT5G01890.1 31.937 191 124 6 166 351 158 347 7.03e-12 68.2
Msa0804870 AT5G01890.1 31.797 217 135 8 165 370 253 467 1.57e-11 67.4
Msa0804870 AT5G01890.1 36.364 165 98 7 192 351 381 543 1.60e-11 67.4
Msa0804870 AT2G33170.2 30.841 214 138 10 165 370 485 696 9.42e-12 68.2
Msa0804870 AT2G33170.2 33.645 214 129 10 166 370 390 599 3.14e-11 66.2
Msa0804870 AT2G33170.1 30.841 214 138 10 165 370 485 696 9.42e-12 68.2
Msa0804870 AT2G33170.1 33.645 214 129 10 166 370 390 599 3.14e-11 66.2
Msa0804870 AT4G20940.1 34.135 208 119 10 175 370 80 281 1.09e-11 67.8
Msa0804870 AT3G28890.1 30.000 240 137 10 141 373 87 302 1.25e-11 67.4
Msa0804870 AT3G28890.2 30.000 240 137 10 141 373 87 302 1.25e-11 67.4
Msa0804870 AT2G41820.1 27.907 258 127 9 171 372 132 386 1.35e-11 67.4
Msa0804870 AT2G41820.1 27.778 234 162 7 143 370 56 288 2.88e-11 66.2
Msa0804870 AT1G34110.2 30.841 214 135 9 166 370 445 654 1.59e-11 67.4
Msa0804870 AT3G47570.1 32.743 226 120 10 175 370 363 586 1.62e-11 67.4
Msa0804870 AT2G42800.1 32.995 197 94 9 185 374 134 299 1.73e-11 66.6
Msa0804870 AT1G34110.1 30.841 214 135 9 166 370 445 654 1.80e-11 67.0
Msa0804870 AT2G01950.1 30.317 221 144 9 140 351 242 461 1.97e-11 67.0
Msa0804870 AT1G13910.2 36.224 196 106 9 188 370 93 282 2.05e-11 65.5
Msa0804870 AT3G11010.4 31.646 237 120 9 178 373 189 424 2.31e-11 66.6
Msa0804870 AT2G15080.1 28.016 257 164 13 141 381 75 326 3.15e-11 66.2
Msa0804870 AT2G15080.2 28.016 257 164 13 141 381 75 326 3.15e-11 66.2
Msa0804870 AT5G61240.2 29.644 253 156 10 128 370 51 291 3.40e-11 65.1
Msa0804870 AT3G11010.6 31.646 237 120 9 178 373 126 361 3.51e-11 66.2
Msa0804870 AT1G08590.1 28.571 238 139 9 169 375 97 334 5.49e-11 65.5
Msa0804870 AT4G28650.1 29.956 227 131 8 152 351 73 298 5.65e-11 65.5
Msa0804870 AT1G13910.1 30.147 272 147 11 113 370 40 282 5.73e-11 64.3
Msa0804870 AT3G02130.1 31.839 223 118 11 166 381 137 332 5.76e-11 65.5
Msa0804870 AT3G23010.1 31.683 202 105 6 197 370 2 198 5.95e-11 65.1
Msa0804870 AT3G05370.1 26.316 228 132 8 166 359 197 422 6.14e-11 65.5
Msa0804870 AT3G47090.1 30.709 254 153 11 166 405 379 623 6.21e-11 65.5
Msa0804870 AT3G02130.2 31.839 223 118 11 166 381 120 315 6.26e-11 65.5
Msa0804870 AT1G73080.1 32.243 214 128 10 168 370 262 469 6.64e-11 65.5
Msa0804870 AT1G73080.1 32.195 205 123 9 181 375 515 713 7.57e-11 65.1

Find 140 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGTTCTCAAATTATTAT+TGG 0.140252 5_3:+21199823 None:intergenic
CTGAATCCGTTTCTCTTTGC+AGG 0.180222 5_3:-21200670 Msa0804870:intron
ACCAGACCACCAACTGTTTC+AGG 0.216466 5_3:+21200272 None:intergenic
GTTTGTTCCCTGACAGATTC+AGG 0.252532 5_3:+21200705 None:intergenic
TGAGGCGATGAAGGAGTTTA+TGG 0.253526 5_3:-21200108 Msa0804870:CDS
TCCTTGATTTAAAACCTCTA+AGG 0.259985 5_3:+21200133 None:intergenic
TTTGGCTAATAATCAGTTAC+AGG 0.280017 5_3:-21202070 Msa0804870:intron
GAGGTGGGTGGGTCTGAGGG+TGG 0.292597 5_3:+21202547 None:intergenic
CATGGCCTACCTCAGTCTAT+TGG 0.306240 5_3:-21200356 Msa0804870:CDS
GGGTTTGGTTGTGATTAATT+TGG 0.313655 5_3:-21202088 Msa0804870:CDS
GTTCATTTCAATGAACTTCA+TGG 0.318655 5_3:-21200374 Msa0804870:CDS
GGGAGAGGTGGGTGGGTCTG+AGG 0.322611 5_3:+21202543 None:intergenic
TGTAGTCCTGCTATTGAATC+AGG 0.325831 5_3:+21200809 None:intergenic
GTGAGTGAAGGTATGAGTTT+GGG 0.340570 5_3:+21202471 None:intergenic
CGTAAGGCAAAGCTCGGATT+TGG 0.344973 5_3:+21200219 None:intergenic
CAGAGAATGGGAAAATCGTT+TGG 0.355606 5_3:+21202588 None:intergenic
CTGCAAAGAGAAACGGATTC+AGG 0.357438 5_3:+21200671 None:intergenic
GAGAAGCTGGTGGAGGGTTA+TGG 0.362840 5_3:-21202270 Msa0804870:CDS
TGTGAGTGAAGGTATGAGTT+TGG 0.366146 5_3:+21202470 None:intergenic
TGGTGGTCTGGTTAACTTAA+GGG 0.369602 5_3:-21200261 Msa0804870:CDS
GGTGGGTCTGAGGGTGGAGA+TGG 0.371617 5_3:+21202553 None:intergenic
GGAGTTGTGGCGGGAGAGGT+GGG 0.375562 5_3:+21202532 None:intergenic
TCCTGAAACAGTTGGTGGTC+TGG 0.376121 5_3:-21200273 Msa0804870:CDS
CTCGGATTTGGTTGTTGCTT+AGG 0.376715 5_3:+21200231 None:intergenic
TTGTAGGTCACTAGTTGAAT+TGG 0.382985 5_3:-21200540 Msa0804870:intron
ATGGCCTACCTCAGTCTATT+GGG 0.388378 5_3:-21200355 Msa0804870:CDS
AATCATTGTTCCGCCCTTAG+AGG 0.390501 5_3:-21200147 Msa0804870:CDS
GCGGAACAATGATTGGATTC+TGG 0.391890 5_3:+21200156 None:intergenic
TGCTGAGGAGAAGCTGGTGG+AGG 0.404632 5_3:-21202277 Msa0804870:CDS
CACAGACAGGTTGGCTGGCG+TGG 0.405023 5_3:-21200016 Msa0804870:CDS
GTTGTGGCGGGAGAGGTGGG+TGG 0.416786 5_3:+21202535 None:intergenic
TTGGTGGTCTGGTTAACTTA+AGG 0.417849 5_3:-21200262 Msa0804870:CDS
CTAAAAGTCCTGAATCTGTC+AGG 0.420433 5_3:-21200713 Msa0804870:CDS
TCATTGTTGAATAATGTTGC+TGG 0.420970 5_3:-21199987 Msa0804870:CDS
CATTGTTGAATAATGTTGCT+GGG 0.421226 5_3:-21199986 Msa0804870:CDS
CGTCTACCAGGCTTTGTTGA+GGG 0.421426 5_3:-21202340 Msa0804870:CDS
ATGGGAAAATCGTTTGGGTT+CGG 0.422693 5_3:+21202594 None:intergenic
CCAGGCTTTGTTGAGGGTGC+AGG 0.424364 5_3:-21202334 Msa0804870:CDS
TCTAAGGGCGGAACAATGAT+TGG 0.430619 5_3:+21200149 None:intergenic
GGAGGGTTATGGTGTATTTG+TGG 0.431196 5_3:-21202259 Msa0804870:CDS
CGAGAAGCAGCGACGGAAGA+AGG 0.432079 5_3:+21202378 None:intergenic
TGATGGAGTTGTGGCGGGAG+AGG 0.432506 5_3:+21202528 None:intergenic
TGTGGAGAAGATGAAGGAAG+AGG 0.438138 5_3:-21202241 Msa0804870:CDS
TGAAATGAGGGAAGTTGGTT+AGG 0.440512 5_3:+21202499 None:intergenic
CCGTCTCTACCAGACTGTAT+TGG 0.441946 5_3:-21200749 Msa0804870:CDS
TGGAGTTGTGGCGGGAGAGG+TGG 0.442272 5_3:+21202531 None:intergenic
AGTCCATAGGCGATGTTTGT+TGG 0.448714 5_3:+21200488 None:intergenic
CAATGATTGGATTCTGGTCC+AGG 0.449313 5_3:+21200162 None:intergenic
GGAGAGGTGGGTGGGTCTGA+GGG 0.451449 5_3:+21202544 None:intergenic
GGTTGAGAAGATGAAGGGTT+TGG 0.451894 5_3:-21202103 Msa0804870:CDS
GTTTAAGAGAAAGCAGAGAA+TGG 0.455084 5_3:+21202575 None:intergenic
AGAGAATGGGAAAATCGTTT+GGG 0.459845 5_3:+21202589 None:intergenic
GTTGGTGAAATGAGGGAAGT+TGG 0.461160 5_3:+21202494 None:intergenic
AGAGAGTTTGTGTGATATTG+AGG 0.463551 5_3:+21202433 None:intergenic
GCAGCGACGGAAGAAGGGTT+TGG 0.463863 5_3:+21202384 None:intergenic
GGAATCGTATCTTATTCAAA+TGG 0.467994 5_3:+21200441 None:intergenic
CGATTCCTTCCTCTGTCCAT+TGG 0.472729 5_3:-21200425 Msa0804870:CDS
GAGAGATTTCATTTCTCCAA+TGG 0.473398 5_3:+21200409 None:intergenic
TTTAAGAGAAAGCAGAGAAT+GGG 0.476438 5_3:+21202576 None:intergenic
AGTTTGGGGTTGGTGAAATG+AGG 0.477070 5_3:+21202486 None:intergenic
ACAGACAGGTTGGCTGGCGT+GGG 0.481584 5_3:-21200015 Msa0804870:CDS
ATGTGGATGAAAGGGTTGGT+GGG 0.482275 5_3:-21202206 Msa0804870:CDS
GATGTGGATGAAAGGGTTGG+TGG 0.483685 5_3:-21202207 Msa0804870:CDS
CCTTGATTTAAAACCTCTAA+GGG 0.489810 5_3:+21200134 None:intergenic
TCAAGGAGTTGAGGCGATGA+AGG 0.490269 5_3:-21200117 Msa0804870:CDS
GCAAGCACAGACAGGTTGGC+TGG 0.491472 5_3:-21200021 Msa0804870:CDS
GTTGGTGGGGTGTTGAGAAA+AGG 0.492192 5_3:-21202192 Msa0804870:CDS
TTGTGGCGGGAGAGGTGGGT+GGG 0.494956 5_3:+21202536 None:intergenic
CCAATAATAATTTGAGAACA+TGG 0.500911 5_3:-21199823 Msa0804870:three_prime_UTR
AAAATCGTTTGGGTTCGGAT+TGG 0.504344 5_3:+21202599 None:intergenic
AATGAGGGAAGTTGGTTAGG+AGG 0.505962 5_3:+21202502 None:intergenic
TTGCCAACAAACATCGCCTA+TGG 0.507627 5_3:-21200491 Msa0804870:CDS
TGATCCATCCATGTGTCTCT+AGG 0.511346 5_3:+21199921 None:intergenic
GTTCTCAAATTATTATTGGA+TGG 0.513387 5_3:+21199827 None:intergenic
AGTTTGTGTGATATTGAGGT+TGG 0.514898 5_3:+21202437 None:intergenic
AAAGAACCTGCAAAGAGAAA+CGG 0.515711 5_3:+21200664 None:intergenic
GCGATTCCTGATTCAATAGC+AGG 0.519293 5_3:-21200815 Msa0804870:CDS
AAATTATTATTGGATGGTAT+CGG 0.523087 5_3:+21199833 None:intergenic
CCTGCACCCTCAACAAAGCC+TGG 0.529971 5_3:+21202334 None:intergenic
ACGTCTACCAGGCTTTGTTG+AGG 0.530085 5_3:-21202341 Msa0804870:CDS
GAGGGTTGCTGAGGAGAAGC+TGG 0.532441 5_3:-21202283 Msa0804870:CDS
TCAAGCCTGCAAAACGCGTA+AGG 0.540010 5_3:+21200203 None:intergenic
TTTCTCCAATGGACAGAGGA+AGG 0.542432 5_3:+21200420 None:intergenic
AGAGGTTGGTGATGAGGATG+TGG 0.543250 5_3:-21202223 Msa0804870:CDS
AAAGCTAACAAAGCTGAACC+TGG 0.545285 5_3:-21200180 Msa0804870:CDS
GAAGGAAGAGGTTGGTGATG+AGG 0.546111 5_3:-21202229 Msa0804870:CDS
CGTCGATGTTCACGTCTACC+AGG 0.548007 5_3:-21202352 Msa0804870:CDS
ACTAGCAATCCAATACAGTC+TGG 0.548160 5_3:+21200740 None:intergenic
GAAAATGTTGCAGAGTATCT+CGG 0.550559 5_3:-21199957 Msa0804870:CDS
GAGAAAAGGTGAAGAGGGTG+AGG 0.554991 5_3:-21202178 Msa0804870:CDS
TGATATTGAGGTTGGTGATG+AGG 0.557616 5_3:+21202445 None:intergenic
TGAAGGTATGAGTTTGGGGT+TGG 0.557917 5_3:+21202476 None:intergenic
ATCAGCAAGCACAGACAGGT+TGG 0.560207 5_3:-21200025 Msa0804870:CDS
TGATGAGGATGTGGATGAAA+GGG 0.563283 5_3:-21202214 Msa0804870:CDS
GTTTGGGGTTGGTGAAATGA+GGG 0.565802 5_3:+21202487 None:intergenic
CAAAATCAGCAAGCACAGAC+AGG 0.567702 5_3:-21200029 Msa0804870:CDS
AGGGTTTGGACGAGGACCGA+GGG 0.573592 5_3:+21202398 None:intergenic
ATGAGTGTGTGAAGCAGTTG+AGG 0.574587 5_3:-21202302 Msa0804870:CDS
GTGATGAGGATGTGGATGAA+AGG 0.575107 5_3:-21202215 Msa0804870:CDS
GTGTTGAGAAAAGGTGAAGA+GGG 0.576194 5_3:-21202183 Msa0804870:CDS
GAGAAGCAGCGACGGAAGAA+GGG 0.583422 5_3:+21202379 None:intergenic
TGTGGATGAAAGGGTTGGTG+GGG 0.583456 5_3:-21202205 Msa0804870:CDS
ACGGAAGAAGGGTTTGGACG+AGG 0.584506 5_3:+21202390 None:intergenic
ATGTCCCATACCGACATATG+TGG 0.590351 5_3:+21199781 None:intergenic
TGAGTGTGTGAAGCAGTTGA+GGG 0.593899 5_3:-21202301 Msa0804870:CDS
AGAAACGGATTCAGGAAGAG+AGG 0.594762 5_3:+21200679 None:intergenic
TAAAAGTCCTGAATCTGTCA+GGG 0.595326 5_3:-21200712 Msa0804870:CDS
CAACTTCCTGAAACAGTTGG+TGG 0.595631 5_3:-21200278 Msa0804870:CDS
GAGAAGATGAAGGAAGAGGT+TGG 0.595637 5_3:-21202237 Msa0804870:CDS
GAGGATGTGGATGAAAGGGT+TGG 0.597242 5_3:-21202210 Msa0804870:CDS
GTGATGAGGTGTGTGAGTGA+AGG 0.600777 5_3:+21202459 None:intergenic
CAGACAGGTTGGCTGGCGTG+GGG 0.605805 5_3:-21200014 Msa0804870:CDS
GCTTCCCAATAGACTGAGGT+AGG 0.607877 5_3:+21200351 None:intergenic
AGCTCCTAGAGACACATGGA+TGG 0.608464 5_3:-21199925 Msa0804870:CDS
GACGTCGCGAGAAGCAGCGA+CGG 0.610189 5_3:+21202371 None:intergenic
CTCAAGGTTAACGAGTCCAT+AGG 0.615302 5_3:+21200475 None:intergenic
TGTATTTGTGGAGAAGATGA+AGG 0.615453 5_3:-21202247 Msa0804870:CDS
CCAATACAGTCTGGTAGAGA+CGG 0.616437 5_3:+21200749 None:intergenic
ACACAACTTCCTGAAACAGT+TGG 0.618552 5_3:-21200281 Msa0804870:CDS
AAAACGCGTAAGGCAAAGCT+CGG 0.619571 5_3:+21200213 None:intergenic
GTTTGGACGAGGACCGAGGG+TGG 0.619885 5_3:+21202401 None:intergenic
GGTGTTGAGAAAAGGTGAAG+AGG 0.626160 5_3:-21202184 Msa0804870:CDS
GCTGAGGAGAAGCTGGTGGA+GGG 0.629628 5_3:-21202276 Msa0804870:CDS
ATTGTTGAATAATGTTGCTG+GGG 0.629859 5_3:-21199985 Msa0804870:CDS
AAGGGTTTGGACGAGGACCG+AGG 0.630567 5_3:+21202397 None:intergenic
TGAGTGAAGGTATGAGTTTG+GGG 0.631440 5_3:+21202472 None:intergenic
ATTCAATAGCAGGACTACAA+AGG 0.631713 5_3:-21200805 Msa0804870:CDS
TTCATTTCTCCAATGGACAG+AGG 0.633969 5_3:+21200416 None:intergenic
AGCAGGACTACAAAGGCTTG+CGG 0.644355 5_3:-21200798 Msa0804870:CDS
AGCAACATTATTCAACAATG+AGG 0.644915 5_3:+21199989 None:intergenic
ATGTAAGTAACCACATATGT+CGG 0.644954 5_3:-21199791 None:intergenic
TGATTTAAAACCTCTAAGGG+CGG 0.647448 5_3:+21200137 None:intergenic
GGTTGCTGAGGAGAAGCTGG+TGG 0.648631 5_3:-21202280 Msa0804870:CDS
AATGGATCGAGAGCTTCTCA+AGG 0.649536 5_3:+21200459 None:intergenic
GAAAAGCTCCTAGAGACACA+TGG 0.667716 5_3:-21199929 Msa0804870:CDS
GTTAGCTTCCCAATAGACTG+AGG 0.668397 5_3:+21200347 None:intergenic
AGGAGTTTATGGCTAAGCGG+TGG 0.671442 5_3:-21200097 Msa0804870:CDS
GAAGCAGTTGAGGGTTGCTG+AGG 0.686532 5_3:-21202292 Msa0804870:CDS
TGAAGGAGTTTATGGCTAAG+CGG 0.703048 5_3:-21200100 Msa0804870:CDS
CAGTATTTCATAGATCACAG+CGG 0.774148 5_3:+21199897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTGTTTATTCTT+TGG - chr5_3:21201074-21201093 Msa0804870:intron 10.0%
!! TTATTTATTGTTTATTCTTT+GGG - chr5_3:21201075-21201094 Msa0804870:intron 10.0%
!! TAAACTAATTTCATTTGTAA+TGG + chr5_3:21201199-21201218 None:intergenic 15.0%
!! ATTTATGTGTTAAACCTTTA+TGG - chr5_3:21200390-21200409 Msa0804870:CDS 20.0%
!! AATAAACTTTGAACTAACAT+GGG + chr5_3:21201060-21201079 None:intergenic 20.0%
!! AAATAAACTTTGAACTAACA+TGG + chr5_3:21201061-21201080 None:intergenic 20.0%
!! TTCCATATATGAAATAAGAA+AGG - chr5_3:21201443-21201462 Msa0804870:intron 20.0%
!!! TTCCTTTCTTATTTCATATA+TGG + chr5_3:21201448-21201467 None:intergenic 20.0%
!! ATGAAATAAGAAAGGAAAAA+TGG - chr5_3:21201451-21201470 Msa0804870:intron 20.0%
!! AAATTATTATTGGATGGTAT+CGG + chr5_3:21202568-21202587 None:intergenic 20.0%
!!! TTGAGAATGTTGATTTTTCT+GGG - chr5_3:21200246-21200265 Msa0804870:CDS 25.0%
! ATACATACAAAACTCCATAA+AGG + chr5_3:21200407-21200426 None:intergenic 25.0%
!! AACACTTAATTAAGTTGTTG+TGG + chr5_3:21200470-21200489 None:intergenic 25.0%
! CATTTATTCTGACACTTAAA+AGG - chr5_3:21201232-21201251 Msa0804870:intron 25.0%
! GAATATCAATATCAAGTCTA+GGG + chr5_3:21201781-21201800 None:intergenic 25.0%
! CTTAACAGAAGTAACAAAAT+AGG + chr5_3:21201821-21201840 None:intergenic 25.0%
! TTATCTTCAATGCAAATTGT+AGG - chr5_3:21201842-21201861 Msa0804870:intron 25.0%
! GTTCTCAAATTATTATTGGA+TGG + chr5_3:21202574-21202593 None:intergenic 25.0%
! CCATGTTCTCAAATTATTAT+TGG + chr5_3:21202578-21202597 None:intergenic 25.0%
! CCAATAATAATTTGAGAACA+TGG - chr5_3:21202575-21202594 Msa0804870:CDS 25.0%
TTTAAGAGAAAGCAGAGAAT+GGG + chr5_3:21199825-21199844 None:intergenic 30.0%
!!! GTTGAGAATGTTGATTTTTC+TGG - chr5_3:21200245-21200264 Msa0804870:CDS 30.0%
TTTGGCTAATAATCAGTTAC+AGG - chr5_3:21200328-21200347 Msa0804870:CDS 30.0%
!! AGCTGTTTTCATAAGTTATC+CGG - chr5_3:21200590-21200609 Msa0804870:intron 30.0%
CGTATTATGTGACTATGATT+TGG + chr5_3:21200732-21200751 None:intergenic 30.0%
GAGAAGAATTTGATACGTAT+AGG - chr5_3:21200801-21200820 Msa0804870:CDS 30.0%
TAGCTTAAAATGTTCCACAT+TGG - chr5_3:21200911-21200930 Msa0804870:intron 30.0%
GGTTTACTAAATAACCAATG+TGG + chr5_3:21200928-21200947 None:intergenic 30.0%
! TAGTAAACCATTGATAGCAA+AGG - chr5_3:21200939-21200958 Msa0804870:intron 30.0%
! AGTAAACCATTGATAGCAAA+GGG - chr5_3:21200940-21200959 Msa0804870:intron 30.0%
CAAAGGGAGTTATAAATAGA+GGG - chr5_3:21200956-21200975 Msa0804870:intron 30.0%
TGTTCAGTTACAAGATACAA+TGG + chr5_3:21201542-21201561 None:intergenic 30.0%
ATATCAAGTCTAGGGAAATT+CGG + chr5_3:21201773-21201792 None:intergenic 30.0%
CGAATATCAATATCAAGTCT+AGG + chr5_3:21201782-21201801 None:intergenic 30.0%
GGAATCGTATCTTATTCAAA+TGG + chr5_3:21201960-21201979 None:intergenic 30.0%
GTTCATTTCAATGAACTTCA+TGG - chr5_3:21202024-21202043 Msa0804870:intron 30.0%
! CCTTGATTTAAAACCTCTAA+GGG + chr5_3:21202267-21202286 None:intergenic 30.0%
! TCCTTGATTTAAAACCTCTA+AGG + chr5_3:21202268-21202287 None:intergenic 30.0%
AGCAACATTATTCAACAATG+AGG + chr5_3:21202412-21202431 None:intergenic 30.0%
TCATTGTTGAATAATGTTGC+TGG - chr5_3:21202411-21202430 Msa0804870:CDS 30.0%
CATTGTTGAATAATGTTGCT+GGG - chr5_3:21202412-21202431 Msa0804870:CDS 30.0%
ATTGTTGAATAATGTTGCTG+GGG - chr5_3:21202413-21202432 Msa0804870:CDS 30.0%
AGAGAATGGGAAAATCGTTT+GGG + chr5_3:21199812-21199831 None:intergenic 35.0%
GTTTAAGAGAAAGCAGAGAA+TGG + chr5_3:21199826-21199845 None:intergenic 35.0%
AGTTTGTGTGATATTGAGGT+TGG + chr5_3:21199964-21199983 None:intergenic 35.0%
AGAGAGTTTGTGTGATATTG+AGG + chr5_3:21199968-21199987 None:intergenic 35.0%
TGTATTTGTGGAGAAGATGA+AGG - chr5_3:21200151-21200170 Msa0804870:CDS 35.0%
!!! ATTTTTCTGGGATGAAGTTG+AGG - chr5_3:21200258-21200277 Msa0804870:CDS 35.0%
!!! TTTTTCTGGGATGAAGTTGA+GGG - chr5_3:21200259-21200278 Msa0804870:CDS 35.0%
! GGGTTTGGTTGTGATTAATT+TGG - chr5_3:21200310-21200329 Msa0804870:CDS 35.0%
!! ACTTATTTTCGTAAGCTCTC+CGG + chr5_3:21200612-21200631 None:intergenic 35.0%
! ATAACTCCCTTTGCTATCAA+TGG + chr5_3:21200949-21200968 None:intergenic 35.0%
GCAAAGGGAGTTATAAATAG+AGG - chr5_3:21200955-21200974 Msa0804870:intron 35.0%
! TTCCAGCACTTTGAAAAAAG+AGG + chr5_3:21200990-21201009 None:intergenic 35.0%
! GCATGTTGTTGTACAGTTTT+GGG - chr5_3:21201015-21201034 Msa0804870:intron 35.0%
TATTCTGACACTTAAAAGGC+TGG - chr5_3:21201236-21201255 Msa0804870:intron 35.0%
GTACTAAAACAGGAACTTCA+CGG + chr5_3:21201311-21201330 None:intergenic 35.0%
ACAACGCTTAGTACTAAAAC+AGG + chr5_3:21201321-21201340 None:intergenic 35.0%
ATGCAGATATTTCATTCGCA+TGG + chr5_3:21201403-21201422 None:intergenic 35.0%
AATTTCATTGCCCTCAAAAC+AGG - chr5_3:21201561-21201580 Msa0804870:intron 35.0%
ATTCAATAGCAGGACTACAA+AGG - chr5_3:21201593-21201612 Msa0804870:intron 35.0%
TAAAAGTCCTGAATCTGTCA+GGG - chr5_3:21201686-21201705 Msa0804870:intron 35.0%
AAAGAACCTGCAAAGAGAAA+CGG + chr5_3:21201737-21201756 None:intergenic 35.0%
TTGTAGGTCACTAGTTGAAT+TGG - chr5_3:21201858-21201877 Msa0804870:intron 35.0%
GAGAGATTTCATTTCTCCAA+TGG + chr5_3:21201992-21202011 None:intergenic 35.0%
! TGATTTAAAACCTCTAAGGG+CGG + chr5_3:21202264-21202283 None:intergenic 35.0%
!!! CCCTTAGAGGTTTTAAATCA+AGG - chr5_3:21202264-21202283 Msa0804870:CDS 35.0%
!!! GGTTTTAAATCAAGGAGTTG+AGG - chr5_3:21202272-21202291 Msa0804870:CDS 35.0%
! GAAAATGTTGCAGAGTATCT+CGG - chr5_3:21202441-21202460 Msa0804870:CDS 35.0%
CAGTATTTCATAGATCACAG+CGG + chr5_3:21202504-21202523 None:intergenic 35.0%
! AAAATCGTTTGGGTTCGGAT+TGG + chr5_3:21199802-21199821 None:intergenic 40.0%
! ATGGGAAAATCGTTTGGGTT+CGG + chr5_3:21199807-21199826 None:intergenic 40.0%
CAGAGAATGGGAAAATCGTT+TGG + chr5_3:21199813-21199832 None:intergenic 40.0%
!! AGTTGGTTAGGAGGTTTTGA+TGG + chr5_3:21199890-21199909 None:intergenic 40.0%
! TGAAATGAGGGAAGTTGGTT+AGG + chr5_3:21199902-21199921 None:intergenic 40.0%
! TGAGTGAAGGTATGAGTTTG+GGG + chr5_3:21199929-21199948 None:intergenic 40.0%
! GTGAGTGAAGGTATGAGTTT+GGG + chr5_3:21199930-21199949 None:intergenic 40.0%
! TGTGAGTGAAGGTATGAGTT+TGG + chr5_3:21199931-21199950 None:intergenic 40.0%
!! TGATATTGAGGTTGGTGATG+AGG + chr5_3:21199956-21199975 None:intergenic 40.0%
TGATGAGGATGTGGATGAAA+GGG - chr5_3:21200184-21200203 Msa0804870:CDS 40.0%
GTGTTGAGAAAAGGTGAAGA+GGG - chr5_3:21200215-21200234 Msa0804870:CDS 40.0%
! AAGTTGAGGGTTTTTCCTGA+GGG - chr5_3:21200272-21200291 Msa0804870:CDS 40.0%
ACATAATACGCAATTCGTGC+TGG - chr5_3:21200742-21200761 Msa0804870:CDS 40.0%
! CGTATAGGAGTATAGAGCTT+CGG - chr5_3:21200816-21200835 Msa0804870:CDS 40.0%
!!! CACCTCTTTTTTCAAAGTGC+TGG - chr5_3:21200985-21201004 Msa0804870:intron 40.0%
! CGCATGTTGTTGTACAGTTT+TGG - chr5_3:21201014-21201033 Msa0804870:intron 40.0%
TTGGGTCTGTGTATCAGTAT+TGG - chr5_3:21201093-21201112 Msa0804870:intron 40.0%
CAGAAAATTTGCACTGAACC+AGG + chr5_3:21201268-21201287 None:intergenic 40.0%
ATAGCGTCGTGTAGTAGAAT+TGG - chr5_3:21201372-21201391 Msa0804870:intron 40.0%
AAGGAAAAATGGAACTGCAC+TGG - chr5_3:21201462-21201481 Msa0804870:intron 40.0%
TGTAGTCCTGCTATTGAATC+AGG + chr5_3:21201592-21201611 None:intergenic 40.0%
ACTAGCAATCCAATACAGTC+TGG + chr5_3:21201661-21201680 None:intergenic 40.0%
CTAAAAGTCCTGAATCTGTC+AGG - chr5_3:21201685-21201704 Msa0804870:intron 40.0%
TTCATTTCTCCAATGGACAG+AGG + chr5_3:21201985-21202004 None:intergenic 40.0%
ACACAACTTCCTGAAACAGT+TGG - chr5_3:21202117-21202136 Msa0804870:CDS 40.0%
! TTGGTGGTCTGGTTAACTTA+AGG - chr5_3:21202136-21202155 Msa0804870:CDS 40.0%
TGGTGGTCTGGTTAACTTAA+GGG - chr5_3:21202137-21202156 Msa0804870:CDS 40.0%
AAAGCTAACAAAGCTGAACC+TGG - chr5_3:21202218-21202237 Msa0804870:CDS 40.0%
TGAAGGAGTTTATGGCTAAG+CGG - chr5_3:21202298-21202317 Msa0804870:CDS 40.0%
TGAAGAGCGACAGAAAAACA+TGG - chr5_3:21202338-21202357 Msa0804870:CDS 40.0%
!! AGGTTTTGATGGAGTTGTGG+CGG + chr5_3:21199879-21199898 None:intergenic 45.0%
!! AGGAGGTTTTGATGGAGTTG+TGG + chr5_3:21199882-21199901 None:intergenic 45.0%
! AATGAGGGAAGTTGGTTAGG+AGG + chr5_3:21199899-21199918 None:intergenic 45.0%
! GTTGGTGAAATGAGGGAAGT+TGG + chr5_3:21199907-21199926 None:intergenic 45.0%
!! GTTTGGGGTTGGTGAAATGA+GGG + chr5_3:21199914-21199933 None:intergenic 45.0%
!! AGTTTGGGGTTGGTGAAATG+AGG + chr5_3:21199915-21199934 None:intergenic 45.0%
! TGAAGGTATGAGTTTGGGGT+TGG + chr5_3:21199925-21199944 None:intergenic 45.0%
ATGAGTGTGTGAAGCAGTTG+AGG - chr5_3:21200096-21200115 Msa0804870:CDS 45.0%
TGAGTGTGTGAAGCAGTTGA+GGG - chr5_3:21200097-21200116 Msa0804870:CDS 45.0%
GGAGGGTTATGGTGTATTTG+TGG - chr5_3:21200139-21200158 Msa0804870:CDS 45.0%
TGTGGAGAAGATGAAGGAAG+AGG - chr5_3:21200157-21200176 Msa0804870:CDS 45.0%
GAGAAGATGAAGGAAGAGGT+TGG - chr5_3:21200161-21200180 Msa0804870:CDS 45.0%
GTGATGAGGATGTGGATGAA+AGG - chr5_3:21200183-21200202 Msa0804870:CDS 45.0%
! ATGTGGATGAAAGGGTTGGT+GGG - chr5_3:21200192-21200211 Msa0804870:CDS 45.0%
! GGTGTTGAGAAAAGGTGAAG+AGG - chr5_3:21200214-21200233 Msa0804870:CDS 45.0%
! GAAGTTGAGGGTTTTTCCTG+AGG - chr5_3:21200271-21200290 Msa0804870:CDS 45.0%
! AGTTGAGGGTTTTTCCTGAG+GGG - chr5_3:21200273-21200292 Msa0804870:CDS 45.0%
GGTTGAGAAGATGAAGGGTT+TGG - chr5_3:21200295-21200314 Msa0804870:CDS 45.0%
!! TCAGGAATCGCCTGTTTTGA+GGG + chr5_3:21201574-21201593 None:intergenic 45.0%
! ATCAGGAATCGCCTGTTTTG+AGG + chr5_3:21201575-21201594 None:intergenic 45.0%
GCGATTCCTGATTCAATAGC+AGG - chr5_3:21201583-21201602 Msa0804870:intron 45.0%
CCAATACAGTCTGGTAGAGA+CGG + chr5_3:21201652-21201671 None:intergenic 45.0%
GTTTGTTCCCTGACAGATTC+AGG + chr5_3:21201696-21201715 None:intergenic 45.0%
! AGAAACGGATTCAGGAAGAG+AGG + chr5_3:21201722-21201741 None:intergenic 45.0%
! CTGCAAAGAGAAACGGATTC+AGG + chr5_3:21201730-21201749 None:intergenic 45.0%
CTGAATCCGTTTCTCTTTGC+AGG - chr5_3:21201728-21201747 Msa0804870:intron 45.0%
TTGCCAACAAACATCGCCTA+TGG - chr5_3:21201907-21201926 Msa0804870:intron 45.0%
AGTCCATAGGCGATGTTTGT+TGG + chr5_3:21201913-21201932 None:intergenic 45.0%
CTCAAGGTTAACGAGTCCAT+AGG + chr5_3:21201926-21201945 None:intergenic 45.0%
AATGGATCGAGAGCTTCTCA+AGG + chr5_3:21201942-21201961 None:intergenic 45.0%
TTTCTCCAATGGACAGAGGA+AGG + chr5_3:21201981-21202000 None:intergenic 45.0%
ATGGCCTACCTCAGTCTATT+GGG - chr5_3:21202043-21202062 Msa0804870:intron 45.0%
! GTTAGCTTCCCAATAGACTG+AGG + chr5_3:21202054-21202073 None:intergenic 45.0%
CAACTTCCTGAAACAGTTGG+TGG - chr5_3:21202120-21202139 Msa0804870:CDS 45.0%
! CTCGGATTTGGTTGTTGCTT+AGG + chr5_3:21202170-21202189 None:intergenic 45.0%
AAAACGCGTAAGGCAAAGCT+CGG + chr5_3:21202188-21202207 None:intergenic 45.0%
CAATGATTGGATTCTGGTCC+AGG + chr5_3:21202239-21202258 None:intergenic 45.0%
GCGGAACAATGATTGGATTC+TGG + chr5_3:21202245-21202264 None:intergenic 45.0%
TCTAAGGGCGGAACAATGAT+TGG + chr5_3:21202252-21202271 None:intergenic 45.0%
AATCATTGTTCCGCCCTTAG+AGG - chr5_3:21202251-21202270 Msa0804870:CDS 45.0%
TGAGGCGATGAAGGAGTTTA+TGG - chr5_3:21202290-21202309 Msa0804870:CDS 45.0%
CAAAATCAGCAAGCACAGAC+AGG - chr5_3:21202369-21202388 Msa0804870:CDS 45.0%
GAAAAGCTCCTAGAGACACA+TGG - chr5_3:21202469-21202488 Msa0804870:CDS 45.0%
TGATCCATCCATGTGTCTCT+AGG + chr5_3:21202480-21202499 None:intergenic 45.0%
!! GGTTTTGATGGAGTTGTGGC+GGG + chr5_3:21199878-21199897 None:intergenic 50.0%
GTGATGAGGTGTGTGAGTGA+AGG + chr5_3:21199942-21199961 None:intergenic 50.0%
! CTCTCTTTTCTCACCACCCT+CGG - chr5_3:21199984-21200003 Msa0804870:CDS 50.0%
!! ACGTCTACCAGGCTTTGTTG+AGG - chr5_3:21200057-21200076 Msa0804870:CDS 50.0%
!! CGTCTACCAGGCTTTGTTGA+GGG - chr5_3:21200058-21200077 Msa0804870:CDS 50.0%
!! GAAGGAAGAGGTTGGTGATG+AGG - chr5_3:21200169-21200188 Msa0804870:CDS 50.0%
!! AGAGGTTGGTGATGAGGATG+TGG - chr5_3:21200175-21200194 Msa0804870:CDS 50.0%
GAGGATGTGGATGAAAGGGT+TGG - chr5_3:21200188-21200207 Msa0804870:CDS 50.0%
GATGTGGATGAAAGGGTTGG+TGG - chr5_3:21200191-21200210 Msa0804870:CDS 50.0%
!! TGTGGATGAAAGGGTTGGTG+GGG - chr5_3:21200193-21200212 Msa0804870:CDS 50.0%
!! GTTGGTGGGGTGTTGAGAAA+AGG - chr5_3:21200206-21200225 Msa0804870:CDS 50.0%
GAGAAAAGGTGAAGAGGGTG+AGG - chr5_3:21200220-21200239 Msa0804870:CDS 50.0%
! GTTGAGGGTTTTTCCTGAGG+GGG - chr5_3:21200274-21200293 Msa0804870:CDS 50.0%
TTCATCTTCTCAACCCCCTC+AGG + chr5_3:21200290-21200309 None:intergenic 50.0%
TGAGGGGGTTGAGAAGATGA+AGG - chr5_3:21200289-21200308 Msa0804870:CDS 50.0%
GAGGGGGTTGAGAAGATGAA+GGG - chr5_3:21200290-21200309 Msa0804870:CDS 50.0%
! ACGCAATTCGTGCTGGTATG+CGG - chr5_3:21200749-21200768 Msa0804870:CDS 50.0%
! ATTCGTGCTGGTATGCGGTA+TGG - chr5_3:21200754-21200773 Msa0804870:CDS 50.0%
! TTCGTGCTGGTATGCGGTAT+GGG - chr5_3:21200755-21200774 Msa0804870:CDS 50.0%
!! TTAAAAGGCTGGTTCGCACC+TGG - chr5_3:21201247-21201266 Msa0804870:intron 50.0%
AGCAGGACTACAAAGGCTTG+CGG - chr5_3:21201600-21201619 Msa0804870:intron 50.0%
CCGTCTCTACCAGACTGTAT+TGG - chr5_3:21201649-21201668 Msa0804870:intron 50.0%
CGATTCCTTCCTCTGTCCAT+TGG - chr5_3:21201973-21201992 Msa0804870:intron 50.0%
CATGGCCTACCTCAGTCTAT+TGG - chr5_3:21202042-21202061 Msa0804870:intron 50.0%
GCTTCCCAATAGACTGAGGT+AGG + chr5_3:21202050-21202069 None:intergenic 50.0%
!! TCCTGAAACAGTTGGTGGTC+TGG - chr5_3:21202125-21202144 Msa0804870:CDS 50.0%
ACCAGACCACCAACTGTTTC+AGG + chr5_3:21202129-21202148 None:intergenic 50.0%
CGTAAGGCAAAGCTCGGATT+TGG + chr5_3:21202182-21202201 None:intergenic 50.0%
! CTTTGCCTTACGCGTTTTGC+AGG - chr5_3:21202190-21202209 Msa0804870:CDS 50.0%
TCAAGCCTGCAAAACGCGTA+AGG + chr5_3:21202198-21202217 None:intergenic 50.0%
TCAAGGAGTTGAGGCGATGA+AGG - chr5_3:21202281-21202300 Msa0804870:CDS 50.0%
AGGAGTTTATGGCTAAGCGG+TGG - chr5_3:21202301-21202320 Msa0804870:CDS 50.0%
ATCAGCAAGCACAGACAGGT+TGG - chr5_3:21202373-21202392 Msa0804870:CDS 50.0%
AGCTCCTAGAGACACATGGA+TGG - chr5_3:21202473-21202492 Msa0804870:CDS 50.0%
ACGGAAGAAGGGTTTGGACG+AGG + chr5_3:21200011-21200030 None:intergenic 55.0%
GAGAAGCAGCGACGGAAGAA+GGG + chr5_3:21200022-21200041 None:intergenic 55.0%
CGTCGATGTTCACGTCTACC+AGG - chr5_3:21200046-21200065 Msa0804870:CDS 55.0%
GAAGCAGTTGAGGGTTGCTG+AGG - chr5_3:21200106-21200125 Msa0804870:CDS 55.0%
GAGAAGCTGGTGGAGGGTTA+TGG - chr5_3:21200128-21200147 Msa0804870:CDS 55.0%
! TGATGGAGTTGTGGCGGGAG+AGG + chr5_3:21199873-21199892 None:intergenic 60.0%
AGGGTTTGGACGAGGACCGA+GGG + chr5_3:21200003-21200022 None:intergenic 60.0%
AAGGGTTTGGACGAGGACCG+AGG + chr5_3:21200004-21200023 None:intergenic 60.0%
GCAGCGACGGAAGAAGGGTT+TGG + chr5_3:21200017-21200036 None:intergenic 60.0%
CGAGAAGCAGCGACGGAAGA+AGG + chr5_3:21200023-21200042 None:intergenic 60.0%
CCTGCACCCTCAACAAAGCC+TGG + chr5_3:21200067-21200086 None:intergenic 60.0%
!! CCAGGCTTTGTTGAGGGTGC+AGG - chr5_3:21200064-21200083 Msa0804870:CDS 60.0%
GAGGGTTGCTGAGGAGAAGC+TGG - chr5_3:21200115-21200134 Msa0804870:CDS 60.0%
GGTTGCTGAGGAGAAGCTGG+TGG - chr5_3:21200118-21200137 Msa0804870:CDS 60.0%
TGCTGAGGAGAAGCTGGTGG+AGG - chr5_3:21200121-21200140 Msa0804870:CDS 60.0%
GCTGAGGAGAAGCTGGTGGA+GGG - chr5_3:21200122-21200141 Msa0804870:CDS 60.0%
! GCAAGCACAGACAGGTTGGC+TGG - chr5_3:21202377-21202396 Msa0804870:CDS 60.0%
! ACAGACAGGTTGGCTGGCGT+GGG - chr5_3:21202383-21202402 Msa0804870:CDS 60.0%
GGTGGGTCTGAGGGTGGAGA+TGG + chr5_3:21199848-21199867 None:intergenic 65.0%
GGAGAGGTGGGTGGGTCTGA+GGG + chr5_3:21199857-21199876 None:intergenic 65.0%
! TTGTGGCGGGAGAGGTGGGT+GGG + chr5_3:21199865-21199884 None:intergenic 65.0%
! GGAGTTGTGGCGGGAGAGGT+GGG + chr5_3:21199869-21199888 None:intergenic 65.0%
! TGGAGTTGTGGCGGGAGAGG+TGG + chr5_3:21199870-21199889 None:intergenic 65.0%
GTTTGGACGAGGACCGAGGG+TGG + chr5_3:21200000-21200019 None:intergenic 65.0%
GACGTCGCGAGAAGCAGCGA+CGG + chr5_3:21200030-21200049 None:intergenic 65.0%
GCGGTATGGGTTCGAGCTCG+CGG - chr5_3:21200768-21200787 Msa0804870:CDS 65.0%
! CACAGACAGGTTGGCTGGCG+TGG - chr5_3:21202382-21202401 Msa0804870:CDS 65.0%
! CAGACAGGTTGGCTGGCGTG+GGG - chr5_3:21202384-21202403 Msa0804870:CDS 65.0%
GAGGTGGGTGGGTCTGAGGG+TGG + chr5_3:21199854-21199873 None:intergenic 70.0%
GGGAGAGGTGGGTGGGTCTG+AGG + chr5_3:21199858-21199877 None:intergenic 70.0%
! GTTGTGGCGGGAGAGGTGGG+TGG + chr5_3:21199866-21199885 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 21199792 21202628 21199792 ID=Msa0804870;Name=Msa0804870
chr5_3 mRNA 21199792 21202628 21199792 ID=Msa0804870-mRNA-1;Parent=Msa0804870;Name=Msa0804870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|1|1|3|119|456
chr5_3 exon 21199792 21200556 21199792 ID=Msa0804870-mRNA-1:exon:8449;Parent=Msa0804870-mRNA-1
chr5_3 exon 21200671 21200837 21200671 ID=Msa0804870-mRNA-1:exon:8448;Parent=Msa0804870-mRNA-1
chr5_3 exon 21202071 21202628 21202071 ID=Msa0804870-mRNA-1:exon:8447;Parent=Msa0804870-mRNA-1
chr5_3 CDS 21202071 21202628 21202071 ID=Msa0804870-mRNA-1:cds;Parent=Msa0804870-mRNA-1
chr5_3 CDS 21200671 21200837 21200671 ID=Msa0804870-mRNA-1:cds;Parent=Msa0804870-mRNA-1
chr5_3 CDS 21199911 21200556 21199911 ID=Msa0804870-mRNA-1:cds;Parent=Msa0804870-mRNA-1
chr5_3 three_prime_UTR 21199792 21199910 21199792 ID=Msa0804870-mRNA-1:three_prime_utr;Parent=Msa0804870-mRNA-1
Gene Sequence

>Msa0804870

ATGGATTCCAATCCGAACCCAAACGATTTTCCCATTCTCTGCTTTCTCTTAAACCATCTCCACCCTCAGACCCACCCACCTCTCCCGCCACAACTCCATCAAAACCTCCTAACCAACTTCCCTCATTTCACCAACCCCAAACTCATACCTTCACTCACACACCTCATCACCAACCTCAATATCACACAAACTCTCTCTTTTCTCACCACCCTCGGTCCTCGTCCAAACCCTTCTTCCGTCGCTGCTTCTCGCGACGTCGATGTTCACGTCTACCAGGCTTTGTTGAGGGTGCAGGATATGCATGATGAGTGTGTGAAGCAGTTGAGGGTTGCTGAGGAGAAGCTGGTGGAGGGTTATGGTGTATTTGTGGAGAAGATGAAGGAAGAGGTTGGTGATGAGGATGTGGATGAAAGGGTTGGTGGGGTGTTGAGAAAAGGTGAAGAGGGTGAGGTTGTTGAGAATGTTGATTTTTCTGGGATGAAGTTGAGGGTTTTTCCTGAGGGGGTTGAGAAGATGAAGGGTTTGGTTGTGATTAATTTGGCTAATAATCAGTTACAGGCGATTCCTGATTCAATAGCAGGACTACAAAGGCTTGCGGAGCTTGATATGTCATCGAATCTTTTACCGTCTCTACCAGACTGTATTGGATTGCTAGTCAATCTAAAAGTCCTGAATCTGTCAGGGAACAAACTAACCTCTCTTCCTGAATCCGTTTCTCTTTGCAGGTCACTAGTTGAATTGGATGTAAGCTTTAACAACTTAATGTGTTTGCCAACAAACATCGCCTATGGACTCGTTAACCTTGAGAAGCTCTCGATCCATTTGAATAAGATACGATTCCTTCCTCTGTCCATTGGAGAAATGAAATCTCTCAGATATCTTGATGTTCATTTCAATGAACTTCATGGCCTACCTCAGTCTATTGGGAAGCTAACAAATCTTGAATATCTAAACATCAGTAGTAATTTCAATGACATGACACAACTTCCTGAAACAGTTGGTGGTCTGGTTAACTTAAGGGAGCTAGACCTAAGCAACAACCAAATCCGAGCTTTGCCTTACGCGTTTTGCAGGCTTGAAAAGCTAACAAAGCTGAACCTGGACCAGAATCCAATCATTGTTCCGCCCTTAGAGGTTTTAAATCAAGGAGTTGAGGCGATGAAGGAGTTTATGGCTAAGCGGTGGCTTGAACACATTGATGAAGAGCGACAGAAAAACATGGCTGAAACTCAAAATCAGCAAGCACAGACAGGTTGGCTGGCGTGGGGAGCCTCATTGTTGAATAATGTTGCTGGGGTTTCTGAAAATGTTGCAGAGTATCTCGGCGTTAGAAAAGCTCCTAGAGACACATGGATGGATCAACCGCTGTGA
Protein sequence

>Msa0804870

MDSNPNPNDFPILCFLLNHLHPQTHPPLPPQLHQNLLTNFPHFTNPKLIPSLTHLITNLNITQTLSFLTTLGPRPNPSSVAASRDVDVHVYQALLRVQDMHDECVKQLRVAEEKLVEGYGVFVEKMKEEVGDEDVDERVGGVLRKGEEGEVVENVDFSGMKLRVFPEGVEKMKGLVVINLANNQLQAIPDSIAGLQRLAELDMSSNLLPSLPDCIGLLVNLKVLNLSGNKLTSLPESVSLCRSLVELDVSFNNLMCLPTNIAYGLVNLEKLSIHLNKIRFLPLSIGEMKSLRYLDVHFNELHGLPQSIGKLTNLEYLNISSNFNDMTQLPETVGGLVNLRELDLSNNQIRALPYAFCRLEKLTKLNLDQNPIIVPPLEVLNQGVEAMKEFMAKRWLEHIDEERQKNMAETQNQQAQTGWLAWGASLLNNVAGVSENVAEYLGVRKAPRDTWMDQPL*