Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998890 | XP_013453041.1 | 98.953 | 191 | 2 | 0 | 1 | 191 | 1 | 191 | 4.27e-134 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998890 | sp|Q9C514|RS71_ARATH | 80.105 | 191 | 38 | 0 | 1 | 191 | 1 | 191 | 2.37e-114 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998890 | B7FGT0 | 98.953 | 191 | 2 | 0 | 1 | 191 | 1 | 191 | 2.04e-134 | 383 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0998890 | 0.862889 | 3.679721e-64 | -8.615850e-47 |
| Msa0029000 | Msa0998890 | 0.841666 | 4.137480e-58 | -8.615850e-47 |
| Msa0042510 | Msa0998890 | 0.892981 | 9.605756e-75 | -8.615850e-47 |
| Msa0051200 | Msa0998890 | -0.800716 | 1.264805e-48 | -8.615850e-47 |
| Msa0051460 | Msa0998890 | -0.805500 | 1.295797e-49 | -8.615850e-47 |
| Msa0079560 | Msa0998890 | 0.883656 | 3.729017e-71 | -8.615850e-47 |
| Msa0094940 | Msa0998890 | 0.813322 | 2.714245e-51 | -8.615850e-47 |
| Msa0108750 | Msa0998890 | 0.820289 | 7.419114e-53 | -8.615850e-47 |
| Msa0610750 | Msa0998890 | 0.804362 | 2.240119e-49 | -8.615850e-47 |
| Msa0621170 | Msa0998890 | 0.824913 | 6.238489e-54 | -8.615850e-47 |
| Msa0621190 | Msa0998890 | 0.855018 | 8.360505e-62 | -8.615850e-47 |
| Msa0656450 | Msa0998890 | 0.819616 | 1.057981e-52 | -8.615850e-47 |
| Msa0660870 | Msa0998890 | -0.810124 | 1.347005e-50 | -8.615850e-47 |
| Msa0700370 | Msa0998890 | 0.883048 | 6.236918e-71 | -8.615850e-47 |
| Msa0768710 | Msa0998890 | 0.803688 | 3.093038e-49 | -8.615850e-47 |
| Msa0776030 | Msa0998890 | -0.811072 | 8.406940e-51 | -8.615850e-47 |
| Msa0799280 | Msa0998890 | -0.808944 | 2.414320e-50 | -8.615850e-47 |
| Msa0127230 | Msa0998890 | 0.887299 | 1.612410e-72 | -8.615850e-47 |
| Msa0128320 | Msa0998890 | 0.821642 | 3.622346e-53 | -8.615850e-47 |
| Msa0146910 | Msa0998890 | 0.863367 | 2.619568e-64 | -8.615850e-47 |
| Msa0226620 | Msa0998890 | 0.823184 | 1.588225e-53 | -8.615850e-47 |
| Msa0370480 | Msa0998890 | -0.826593 | 2.491594e-54 | -8.615850e-47 |
| Msa0373350 | Msa0998890 | 0.802802 | 4.719895e-49 | -8.615850e-47 |
| Msa0377610 | Msa0998890 | 0.884392 | 1.994510e-71 | -8.615850e-47 |
| Msa0383490 | Msa0998890 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0388540 | Msa0998890 | 0.854845 | 9.382429e-62 | -8.615850e-47 |
| Msa0389360 | Msa0998890 | -0.819587 | 1.073820e-52 | -8.615850e-47 |
| Msa0421920 | Msa0998890 | 0.813774 | 2.158729e-51 | -8.615850e-47 |
| Msa0426820 | Msa0998890 | 0.861812 | 7.883573e-64 | -8.615850e-47 |
| Msa0440040 | Msa0998890 | -0.833319 | 5.708475e-56 | -8.615850e-47 |
| Msa0467740 | Msa0998890 | 0.904799 | 8.411434e-80 | -8.615850e-47 |
| Msa0470230 | Msa0998890 | 0.831276 | 1.830112e-55 | -8.615850e-47 |
| Msa0477670 | Msa0998890 | 0.830344 | 3.097000e-55 | -8.615850e-47 |
| Msa0987570 | Msa0998890 | 0.814100 | 1.829282e-51 | -8.615850e-47 |
| Msa0996830 | Msa0998890 | 0.823702 | 1.201154e-53 | -8.615850e-47 |
| Msa0998890 | Msa1035900 | 0.824549 | 7.601026e-54 | -8.615850e-47 |
| Msa0998890 | Msa1041600 | 0.805376 | 1.375350e-49 | -8.615850e-47 |
| Msa0998890 | Msa1068200 | 0.808559 | 2.918604e-50 | -8.615850e-47 |
| Msa0998890 | Msa1075080 | 0.817428 | 3.314968e-52 | -8.615850e-47 |
| Msa0998890 | Msa1144630 | 0.826774 | 2.255242e-54 | -8.615850e-47 |
| Msa0998890 | Msa1156340 | 0.808415 | 3.131973e-50 | -8.615850e-47 |
| Msa0998890 | Msa1165700 | 0.888689 | 4.723793e-73 | -8.615850e-47 |
| Msa0998890 | Msa1166500 | 0.805710 | 1.170572e-49 | -8.615850e-47 |
| Msa0998890 | Msa1184530 | -0.814685 | 1.358391e-51 | -8.615850e-47 |
| Msa0998890 | Msa1184550 | -0.821730 | 3.456930e-53 | -8.615850e-47 |
| Msa0998890 | Msa1209560 | -0.873810 | 1.101645e-67 | -8.615850e-47 |
| Msa0998890 | Msa1246040 | -0.879495 | 1.189892e-69 | -8.615850e-47 |
| Msa0998890 | Msa1284800 | 0.842976 | 1.860726e-58 | -8.615850e-47 |
| Msa0998890 | Msa1298910 | -0.847209 | 1.336927e-59 | -8.615850e-47 |
| Msa0998890 | Msa1303200 | 0.810272 | 1.251719e-50 | -8.615850e-47 |
| Msa0998890 | Msa1328830 | 0.815191 | 1.049019e-51 | -8.615850e-47 |
| Msa0998890 | Msa1330530 | -0.850110 | 2.099138e-60 | -8.615850e-47 |
| Msa0998890 | Msa1336360 | -0.806924 | 6.494292e-50 | -8.615850e-47 |
| Msa0998890 | Msa1363930 | 0.826379 | 2.802283e-54 | -8.615850e-47 |
| Msa0998890 | Msa1366540 | 0.836656 | 8.234763e-57 | -8.615850e-47 |
| Msa0998890 | Msa1377070 | -0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0998890 | Msa1387750 | 0.880679 | 4.499884e-70 | -8.615850e-47 |
| Msa0998890 | Msa1413570 | 0.809220 | 2.107275e-50 | -8.615850e-47 |
| Msa0998890 | Msa1416140 | 0.814982 | 1.167343e-51 | -8.615850e-47 |
| Msa0998890 | Msa1437530 | 0.819904 | 9.090446e-53 | -8.615850e-47 |
| Msa0998890 | Msa1461810 | 0.811176 | 7.980534e-51 | -8.615850e-47 |
| Msa0998890 | Msa1463510 | 0.820204 | 7.762072e-53 | -8.615850e-47 |
| Msa0998890 | Msa1465890 | 0.829360 | 5.377226e-55 | -8.615850e-47 |
| Msa0998890 | Msa1466810 | -0.813179 | 2.917600e-51 | -8.615850e-47 |
| Msa0260270 | Msa0998890 | 0.823490 | 1.346940e-53 | -8.615850e-47 |
| Msa0304270 | Msa0998890 | 0.823105 | 1.656279e-53 | -8.615850e-47 |
| Msa0307510 | Msa0998890 | -0.825113 | 5.594919e-54 | -8.615850e-47 |
| Msa0330670 | Msa0998890 | -0.817420 | 3.327721e-52 | -8.615850e-47 |
| Msa0514130 | Msa0998890 | 0.898250 | 6.379144e-77 | -8.615850e-47 |
| Msa0532810 | Msa0998890 | 0.827975 | 1.162679e-54 | -8.615850e-47 |
| Msa0564510 | Msa0998890 | -0.801682 | 8.026118e-49 | -8.615850e-47 |
| Msa0858190 | Msa0998890 | 0.804696 | 1.908387e-49 | -8.615850e-47 |
| Msa0912210 | Msa0998890 | -0.809623 | 1.726703e-50 | -8.615850e-47 |
| Msa0912470 | Msa0998890 | -0.800038 | 1.738146e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998890 | MtrunA17_Chr6g0484891 | 98.953 | 191 | 2 | 0 | 1 | 191 | 1 | 191 | 3.92e-138 | 383 |
| Msa0998890 | MtrunA17_Chr6g0458031 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 5.82e-138 | 382 |
| Msa0998890 | MtrunA17_Chr8g0379651 | 63.636 | 44 | 8 | 1 | 145 | 188 | 51 | 86 | 5.30e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998890 | AT1G48830.1 | 80.105 | 191 | 38 | 0 | 1 | 191 | 1 | 191 | 2.41e-115 | 326 |
| Msa0998890 | AT1G48830.2 | 80.105 | 191 | 38 | 0 | 1 | 191 | 1 | 191 | 2.41e-115 | 326 |
| Msa0998890 | AT3G02560.1 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 7.63e-114 | 322 |
| Msa0998890 | AT3G02560.3 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 7.63e-114 | 322 |
| Msa0998890 | AT3G02560.2 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 7.63e-114 | 322 |
| Msa0998890 | AT5G16130.1 | 81.383 | 188 | 35 | 0 | 1 | 188 | 1 | 188 | 3.10e-113 | 320 |
Find 72 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGCCAAGTTGATGTTTC+TGG | 0.145762 | 6_4:+80387470 | Msa0998890:intron |
| ATATGATGAATGTTTATTTA+TGG | 0.222500 | 6_4:+80388649 | Msa0998890:three_prime_UTR |
| GTTGAAGCTCTCTATGATTC+TGG | 0.238608 | 6_4:+80388681 | Msa0998890:three_prime_UTR |
| TATGATACATTATTTATTAT+AGG | 0.254565 | 6_4:+80388725 | Msa0998890:three_prime_UTR |
| TTTGTTAACCTATATTGTTT+TGG | 0.270170 | 6_4:-80385229 | None:intergenic |
| AGAATCTACGCCTCAGTAAC+AGG | 0.280462 | 6_4:-80388590 | None:intergenic |
| CAAAACATATATTTATAAAA+TGG | 0.285522 | 6_4:-80385192 | None:intergenic |
| TGAGCAGCGGAGCCTTTCTT+TGG | 0.288203 | 6_4:-80388142 | None:intergenic |
| ATAGTTTACCTTCATGATCT+TGG | 0.292174 | 6_4:-80388272 | None:intergenic |
| TTATTATGAAAAGTCTTTCT+TGG | 0.331298 | 6_4:-80388808 | None:intergenic |
| TAAACCAAGAGTGTTTCATT+AGG | 0.349218 | 6_4:+80385258 | Msa0998890:five_prime_UTR |
| AAATTCACGTCAAGCTCGTT+AGG | 0.363074 | 6_4:+80387549 | Msa0998890:CDS |
| CGTACTAGATACAGAATTGA+TGG | 0.367485 | 6_4:+80388247 | Msa0998890:CDS |
| TATAATAAATAATGTATCAT+AGG | 0.369192 | 6_4:-80388723 | None:intergenic |
| TATTATGAAAAGTCTTTCTT+GGG | 0.377421 | 6_4:-80388807 | None:intergenic |
| AAACCAAGAGTGTTTCATTA+GGG | 0.381952 | 6_4:+80385259 | Msa0998890:five_prime_UTR |
| GTTGCAGGCTTTGTTTGATC+TGG | 0.412438 | 6_4:+80387311 | Msa0998890:intron |
| CGCTGAGCCTACTGAATTTG+AGG | 0.426295 | 6_4:+80387178 | Msa0998890:CDS |
| TTGTGAAGATGTTTACTTCA+AGG | 0.429731 | 6_4:+80387132 | Msa0998890:exon |
| GCAGCGGAGCCTTTCTTTGG+TGG | 0.435938 | 6_4:-80388139 | None:intergenic |
| ACACAAGCCCAAAACAATAT+AGG | 0.443215 | 6_4:+80385221 | Msa0998890:five_prime_UTR |
| GCAGTTTACAGGAAACTCTC+AGG | 0.456482 | 6_4:+80388545 | Msa0998890:CDS |
| AACAATATAGGTTAACAAAC+GGG | 0.467869 | 6_4:+80385233 | Msa0998890:five_prime_UTR |
| ATTTGAGGAGTCAGTTGGAC+AGG | 0.472058 | 6_4:+80387193 | Msa0998890:CDS |
| TGTTACCTGCTGAGATTGTT+GGG | 0.479284 | 6_4:+80388221 | Msa0998890:CDS |
| TCCTCAATCTGTAGGGGACA+TGG | 0.482798 | 6_4:-80387514 | None:intergenic |
| TGGTGGCCTGACGATTCTCC+TGG | 0.483590 | 6_4:-80388122 | None:intergenic |
| GTGTTACCTGCTGAGATTGT+TGG | 0.484291 | 6_4:+80388220 | Msa0998890:CDS |
| AAACAATATAGGTTAACAAA+CGG | 0.484374 | 6_4:+80385232 | Msa0998890:five_prime_UTR |
| AAACCCTAATGAAACACTCT+TGG | 0.492918 | 6_4:-80385262 | None:intergenic |
| TCCCCTACAGATTGAGGAAG+GGG | 0.499187 | 6_4:+80387519 | Msa0998890:CDS |
| CGTGGACAGCAGTGAGTGTA+CGG | 0.505350 | 6_4:-80388177 | None:intergenic |
| ATCGTCAGGCCACCAAAGAA+AGG | 0.508890 | 6_4:+80388130 | Msa0998890:CDS |
| TTCTGGAAACCGCAAGGCTG+TGG | 0.509249 | 6_4:+80387487 | Msa0998890:CDS |
| TTGCCACCAGGAGAATCGTC+AGG | 0.510117 | 6_4:+80388116 | Msa0998890:CDS |
| GAAGAAAATCAGCAAGGACA+AGG | 0.510615 | 6_4:+80387154 | Msa0998890:CDS |
| GAACCCCTTCCTCAATCTGT+AGG | 0.515858 | 6_4:-80387522 | None:intergenic |
| ATCTGCATCTTCTTCAGCTA+AGG | 0.519517 | 6_4:+80385316 | Msa0998890:five_prime_UTR |
| AACCCCTTCCTCAATCTGTA+GGG | 0.519704 | 6_4:-80387521 | None:intergenic |
| TCCATGTCCCCTACAGATTG+AGG | 0.519730 | 6_4:+80387513 | Msa0998890:CDS |
| TAAATGATATATTAAAATGA+CGG | 0.537005 | 6_4:+80388861 | Msa0998890:three_prime_UTR |
| ACTGAATTTGAGGAGTCAGT+TGG | 0.548538 | 6_4:+80387188 | Msa0998890:CDS |
| GCGCGCGAGAAGTGTGAAGG+TGG | 0.549394 | 6_4:+80385133 | None:intergenic |
| AATTCACGTCAAGCTCGTTA+GGG | 0.550766 | 6_4:+80387550 | Msa0998890:CDS |
| GCTGCGTGGACGCTGAGCAG+CGG | 0.558388 | 6_4:-80388155 | None:intergenic |
| CGTTTCCCAACAATCTCAGC+AGG | 0.558735 | 6_4:-80388226 | None:intergenic |
| GTTTGAGTACCCTGTTACTG+AGG | 0.572498 | 6_4:+80388580 | Msa0998890:CDS |
| TGTCCCCTACAGATTGAGGA+AGG | 0.573232 | 6_4:+80387517 | Msa0998890:CDS |
| GGTTTCCAGAAACATCAACT+TGG | 0.575562 | 6_4:-80387475 | None:intergenic |
| ATGTAATCCTCATTGCCACC+AGG | 0.584954 | 6_4:+80388104 | Msa0998890:CDS |
| CGATTCTCCTGGTGGCAATG+AGG | 0.590532 | 6_4:-80388111 | None:intergenic |
| CGCGCGAGAAGTGTGAAGGT+GGG | 0.590711 | 6_4:+80385134 | None:intergenic |
| AGCTGAAGAAGATGCAGATG+CGG | 0.598151 | 6_4:-80385312 | None:intergenic |
| AAGAAAATCAGCAAGGACAA+GGG | 0.599976 | 6_4:+80387155 | Msa0998890:CDS |
| ATGTGATATAACTTGTGTTG+TGG | 0.601085 | 6_4:+80388837 | Msa0998890:three_prime_UTR |
| CAGTTTACAGGAAACTCTCA+GGG | 0.612531 | 6_4:+80388546 | Msa0998890:CDS |
| TGAGAAGAAATTCAGCGGAA+AGG | 0.621961 | 6_4:+80387577 | Msa0998890:CDS |
| TGATGTTTCTGGAAACCGCA+AGG | 0.622049 | 6_4:+80387481 | Msa0998890:CDS |
| GTCCCCTACAGATTGAGGAA+GGG | 0.622569 | 6_4:+80387518 | Msa0998890:CDS |
| ACTGACTCCTCAAATTCAGT+AGG | 0.622702 | 6_4:-80387185 | None:intergenic |
| AGGGCGCGCGAGAAGTGTGA+AGG | 0.630598 | 6_4:+80385130 | None:intergenic |
| TGATGGATCCAAGATCATGA+AGG | 0.639271 | 6_4:+80388264 | Msa0998890:CDS |
| ACCCCTTCCTCAATCTGTAG+GGG | 0.640960 | 6_4:-80387520 | None:intergenic |
| TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 6_4:+80388192 | Msa0998890:CDS |
| TTCAAGGAAGAAAATCAGCA+AGG | 0.648771 | 6_4:+80387148 | Msa0998890:CDS |
| GCAGTGAGTGTACGGCTGCG+TGG | 0.657285 | 6_4:-80388169 | None:intergenic |
| TACACTCACTGCTGTCCACG+AGG | 0.659160 | 6_4:+80388180 | Msa0998890:CDS |
| TGGCCTGACGATTCTCCTGG+TGG | 0.662830 | 6_4:-80388119 | None:intergenic |
| CATGGATAACCACAGCCTTG+CGG | 0.677240 | 6_4:-80387496 | None:intergenic |
| GAATCTACGCCTCAGTAACA+GGG | 0.678065 | 6_4:-80388589 | None:intergenic |
| CATCCTCGAGCATTGCCTCG+TGG | 0.690997 | 6_4:-80388195 | None:intergenic |
| GAGCTTGAGAAGAAATTCAG+CGG | 0.694607 | 6_4:+80387572 | Msa0998890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAACATATATTTATAAAA+TGG | - | chr6_4:80385195-80385214 | None:intergenic | 10.0% |
| !!! | CATTTTATAAATATATGTTT+TGG | + | chr6_4:80385193-80385212 | Msa0998890:five_prime_UTR | 10.0% |
| !!! | TTTTAAATAATTTGAATGAA+TGG | + | chr6_4:80386541-80386560 | Msa0998890:intron | 10.0% |
| !! | TTTAAATAATTTGAATGAAT+GGG | + | chr6_4:80386542-80386561 | Msa0998890:intron | 10.0% |
| !! | TATAATAAATAATGTATCAT+AGG | - | chr6_4:80388726-80388745 | None:intergenic | 10.0% |
| !! | TATGATACATTATTTATTAT+AGG | + | chr6_4:80388725-80388744 | Msa0998890:three_prime_UTR | 10.0% |
| !! | TAAATGATATATTAAAATGA+CGG | + | chr6_4:80388861-80388880 | Msa0998890:three_prime_UTR | 10.0% |
| !! | TATTATATAGAAGAGATAAA+GGG | + | chr6_4:80385662-80385681 | Msa0998890:intron | 15.0% |
| !! | CAATATAGGTTATTAAAAAA+TGG | - | chr6_4:80386027-80386046 | None:intergenic | 15.0% |
| !!! | CATTTTTTAATAACCTATAT+TGG | + | chr6_4:80386025-80386044 | Msa0998890:intron | 15.0% |
| !! | ATATGATGAATGTTTATTTA+TGG | + | chr6_4:80388649-80388668 | Msa0998890:three_prime_UTR | 15.0% |
| !!! | TTGTTAACCTATATTGTTTT+GGG | - | chr6_4:80385231-80385250 | None:intergenic | 20.0% |
| !!! | TTTGTTAACCTATATTGTTT+TGG | - | chr6_4:80385232-80385251 | None:intergenic | 20.0% |
| !! | AAACAATATAGGTTAACAAA+CGG | + | chr6_4:80385232-80385251 | Msa0998890:five_prime_UTR | 20.0% |
| !! | AAATCGTTGAACAAAAAATA+TGG | - | chr6_4:80385444-80385463 | None:intergenic | 20.0% |
| !! | CTATTATATAGAAGAGATAA+AGG | + | chr6_4:80385661-80385680 | Msa0998890:intron | 20.0% |
| !!! | TTTTGCTATAAAAATACCTT+AGG | + | chr6_4:80385915-80385934 | Msa0998890:intron | 20.0% |
| !!! | TGTTTTTTATTGATGTGTTT+TGG | + | chr6_4:80386517-80386536 | Msa0998890:intron | 20.0% |
| !! | GAAACATTAACAAGAAAAAT+GGG | - | chr6_4:80386673-80386692 | None:intergenic | 20.0% |
| !! | AGAAACATTAACAAGAAAAA+TGG | - | chr6_4:80386674-80386693 | None:intergenic | 20.0% |
| !!! | GTTTCTGTTGTTTTTATATT+TGG | + | chr6_4:80386688-80386707 | Msa0998890:intron | 20.0% |
| !!! | GTTGTTTTTATATTTGGATT+TGG | + | chr6_4:80386694-80386713 | Msa0998890:intron | 20.0% |
| !!! | TTTGTAAATGTTTTTGTTTG+TGG | + | chr6_4:80386743-80386762 | Msa0998890:intron | 20.0% |
| !!! | AGGTTATATATTGATTACTA+CGG | + | chr6_4:80387213-80387232 | Msa0998890:intron | 20.0% |
| !! | AAATTGGAACAAAAAATTGT+CGG | - | chr6_4:80387674-80387693 | None:intergenic | 20.0% |
| !! | AGAATAAAGTTCTTGAAATA+AGG | - | chr6_4:80387723-80387742 | None:intergenic | 20.0% |
| !! | TTAAAGCAATTTAAAAACCA+AGG | - | chr6_4:80387758-80387777 | None:intergenic | 20.0% |
| !! | CAAATTATTTAGTGTATGTT+TGG | - | chr6_4:80387988-80388007 | None:intergenic | 20.0% |
| !! | TATTATGAAAAGTCTTTCTT+GGG | - | chr6_4:80388810-80388829 | None:intergenic | 20.0% |
| !! | TTATTATGAAAAGTCTTTCT+TGG | - | chr6_4:80388811-80388830 | None:intergenic | 20.0% |
| !!! | TGTTTTCCAACTTTTTTCTT+GGG | - | chr6_4:80385170-80385189 | None:intergenic | 25.0% |
| !!! | ATGTTTTCCAACTTTTTTCT+TGG | - | chr6_4:80385171-80385190 | None:intergenic | 25.0% |
| ! | AACAATATAGGTTAACAAAC+GGG | + | chr6_4:80385233-80385252 | Msa0998890:five_prime_UTR | 25.0% |
| ! | TAGAGCAATAAATCGTAAAA+GGG | - | chr6_4:80385355-80385374 | None:intergenic | 25.0% |
| ! | ATAGAGCAATAAATCGTAAA+AGG | - | chr6_4:80385356-80385375 | None:intergenic | 25.0% |
| !!! | TTTTGTTTCACTGATTGATA+TGG | + | chr6_4:80385531-80385550 | Msa0998890:intron | 25.0% |
| ! | GATTGATATGGTTAATTACT+TGG | + | chr6_4:80385543-80385562 | Msa0998890:intron | 25.0% |
| ! | TCTCTTCTATATAATAGCTT+AGG | - | chr6_4:80385658-80385677 | None:intergenic | 25.0% |
| !!! | ATAAGATTTTTCAGACAGTT+TGG | + | chr6_4:80385700-80385719 | Msa0998890:intron | 25.0% |
| !!! | TAAGATTTTTCAGACAGTTT+GGG | + | chr6_4:80385701-80385720 | Msa0998890:intron | 25.0% |
| !! | AGTTGCTTTATGAGTTATAT+TGG | - | chr6_4:80385793-80385812 | None:intergenic | 25.0% |
| ! | TTTCATAACATCTCCAATAT+AGG | - | chr6_4:80386041-80386060 | None:intergenic | 25.0% |
| ! | TAAATTACTTGAGACAGTTT+GGG | - | chr6_4:80386113-80386132 | None:intergenic | 25.0% |
| ! | ATAAATTACTTGAGACAGTT+TGG | - | chr6_4:80386114-80386133 | None:intergenic | 25.0% |
| ! | CACATTATGTGTTAAGTATA+AGG | + | chr6_4:80386193-80386212 | Msa0998890:intron | 25.0% |
| !!! | TTAAAGCATCGTTTAATTCA+TGG | + | chr6_4:80386243-80386262 | Msa0998890:intron | 25.0% |
| ! | TCCAATTACATTTAGTGTAA+TGG | + | chr6_4:80386289-80386308 | Msa0998890:intron | 25.0% |
| ! | CCAATTACATTTAGTGTAAT+GGG | + | chr6_4:80386290-80386309 | Msa0998890:intron | 25.0% |
| ! | ACATATTACTATTGCTTCAA+GGG | - | chr6_4:80386409-80386428 | None:intergenic | 25.0% |
| ! | AAACCATAAAAAAAGGATTG+TGG | - | chr6_4:80386452-80386471 | None:intergenic | 25.0% |
| !!! | CAATCCTTTTTTTATGGTTT+TGG | + | chr6_4:80386452-80386471 | Msa0998890:intron | 25.0% |
| ! | TCTACCAAAACCATAAAAAA+AGG | - | chr6_4:80386459-80386478 | None:intergenic | 25.0% |
| !! | CAGATTTTATGAACATCTAA+GGG | + | chr6_4:80386626-80386645 | Msa0998890:intron | 25.0% |
| ! | TGCAATAATGATGTTGTATT+TGG | + | chr6_4:80386859-80386878 | Msa0998890:intron | 25.0% |
| ! | TATTTAGTGTATGTTTGGTT+TGG | - | chr6_4:80387983-80388002 | None:intergenic | 25.0% |
| !! | TGTGAGAAAACAATTTTTCA+AGG | - | chr6_4:80388029-80388048 | None:intergenic | 25.0% |
| !!! | AGTAACTTTTGGAAATTGTT+TGG | - | chr6_4:80388306-80388325 | None:intergenic | 25.0% |
| !!! | TGCTTATTTTCACATTAGTT+TGG | - | chr6_4:80388362-80388381 | None:intergenic | 25.0% |
| ! | TGATGTTAATTGAATTCTTG+TGG | + | chr6_4:80388451-80388470 | Msa0998890:intron | 25.0% |
| !!! | GATTCTATTTTTCTCAGTTT+TGG | + | chr6_4:80388607-80388626 | Msa0998890:exon | 25.0% |
| GAAATTCCCAAGAAAAAAGT+TGG | + | chr6_4:80385161-80385180 | Msa0998890:five_prime_UTR | 30.0% | |
| !! | TAAACCAAGAGTGTTTCATT+AGG | + | chr6_4:80385258-80385277 | Msa0998890:five_prime_UTR | 30.0% |
| !! | AAACCAAGAGTGTTTCATTA+GGG | + | chr6_4:80385259-80385278 | Msa0998890:five_prime_UTR | 30.0% |
| !! | TTGAGTTTTCTGCTTTTCTT+AGG | + | chr6_4:80385471-80385490 | Msa0998890:intron | 30.0% |
| !! | TGAGTTTTCTGCTTTTCTTA+GGG | + | chr6_4:80385472-80385491 | Msa0998890:intron | 30.0% |
| TTTACTAATAAGCTTGCCTA+AGG | - | chr6_4:80385934-80385953 | None:intergenic | 30.0% | |
| TTAGGCAAGCTTATTAGTAA+AGG | + | chr6_4:80385933-80385952 | Msa0998890:intron | 30.0% | |
| AAATTACTTGAGACAGTTTG+GGG | - | chr6_4:80386112-80386131 | None:intergenic | 30.0% | |
| ATTTAGACTAAGAACCTGTT+TGG | - | chr6_4:80386165-80386184 | None:intergenic | 30.0% | |
| CCCATTACACTAAATGTAAT+TGG | - | chr6_4:80386293-80386312 | None:intergenic | 30.0% | |
| ATCATTGAACTTGCAATTTG+CGG | + | chr6_4:80386321-80386340 | Msa0998890:intron | 30.0% | |
| CACATATTACTATTGCTTCA+AGG | - | chr6_4:80386410-80386429 | None:intergenic | 30.0% | |
| !!! | CTTCCACAATCCTTTTTTTA+TGG | + | chr6_4:80386446-80386465 | Msa0998890:intron | 30.0% |
| ! | GCAGATTTTATGAACATCTA+AGG | + | chr6_4:80386625-80386644 | Msa0998890:intron | 30.0% |
| TTGTGAAGATGTTTACTTCA+AGG | + | chr6_4:80387132-80387151 | Msa0998890:exon | 30.0% | |
| !!! | TGTTTTCAATTTGTTGTTGC+AGG | + | chr6_4:80387296-80387315 | Msa0998890:intron | 30.0% |
| TTAGAAAGAATAACTGGCAA+AGG | - | chr6_4:80387621-80387640 | None:intergenic | 30.0% | |
| GACAGAATCGTAATAAAAGA+TGG | - | chr6_4:80387649-80387668 | None:intergenic | 30.0% | |
| CTGTAAAACTGAAGTTAATC+AGG | + | chr6_4:80387809-80387828 | Msa0998890:intron | 30.0% | |
| AACAAAAACTCACGATTACA+TGG | + | chr6_4:80387881-80387900 | Msa0998890:intron | 30.0% | |
| CTAATGAACCTTAAACTTGT+AGG | + | chr6_4:80388081-80388100 | Msa0998890:intron | 30.0% | |
| GATTACATCCTACAAGTTTA+AGG | - | chr6_4:80388092-80388111 | None:intergenic | 30.0% | |
| ATAGTTTACCTTCATGATCT+TGG | - | chr6_4:80388275-80388294 | None:intergenic | 30.0% | |
| !!! | TTCAAGCTTTGAGTAACTTT+TGG | - | chr6_4:80388317-80388336 | None:intergenic | 30.0% |
| ! | TCTGTGTATATAGGTGTTTT+TGG | + | chr6_4:80388475-80388494 | Msa0998890:intron | 30.0% |
| !! | CAGTATTGTTTTTCTCCTTT+GGG | - | chr6_4:80388502-80388521 | None:intergenic | 30.0% |
| !! | TCAGTATTGTTTTTCTCCTT+TGG | - | chr6_4:80388503-80388522 | None:intergenic | 30.0% |
| CACATAGCAAAAAAGTCATT+TGG | - | chr6_4:80388753-80388772 | None:intergenic | 30.0% | |
| !!! | CAAATGACTTTTTTGCTATG+TGG | + | chr6_4:80388751-80388770 | Msa0998890:three_prime_UTR | 30.0% |
| ! | ATGTGATATAACTTGTGTTG+TGG | + | chr6_4:80388837-80388856 | Msa0998890:three_prime_UTR | 30.0% |
| !!! | ATTGTTTTGGGCTTGTGTTT+GGG | - | chr6_4:80385219-80385238 | None:intergenic | 35.0% |
| !!! | TATTGTTTTGGGCTTGTGTT+TGG | - | chr6_4:80385220-80385239 | None:intergenic | 35.0% |
| ACACAAGCCCAAAACAATAT+AGG | + | chr6_4:80385221-80385240 | Msa0998890:five_prime_UTR | 35.0% | |
| AAACCCTAATGAAACACTCT+TGG | - | chr6_4:80385265-80385284 | None:intergenic | 35.0% | |
| !! | CTGCTTTTCTTAGGGTTTTA+TGG | + | chr6_4:80385480-80385499 | Msa0998890:intron | 35.0% |
| TGTAACCTGTCAAGAATCTT+AGG | + | chr6_4:80385577-80385596 | Msa0998890:intron | 35.0% | |
| GTAACCTGTCAAGAATCTTA+GGG | + | chr6_4:80385578-80385597 | Msa0998890:intron | 35.0% | |
| GTTGTTTATCCAATCCAAAC+AGG | - | chr6_4:80385604-80385623 | None:intergenic | 35.0% | |
| GATAAAGGGTCTGTTTGTAT+TGG | + | chr6_4:80385676-80385695 | Msa0998890:intron | 35.0% | |
| ! | AAAATGGCTTGTAGCATGTA+TGG | - | chr6_4:80386011-80386030 | None:intergenic | 35.0% |
| AATTACTTGAGACAGTTTGG+GGG | - | chr6_4:80386111-80386130 | None:intergenic | 35.0% | |
| ACTCAATTGAGCTTCTCTAT+TGG | - | chr6_4:80386138-80386157 | None:intergenic | 35.0% | |
| TCAATTGAGTCAATCCAAAC+AGG | + | chr6_4:80386148-80386167 | Msa0998890:intron | 35.0% | |
| TAATAGTAGGCTTCACTATC+TGG | + | chr6_4:80386346-80386365 | Msa0998890:intron | 35.0% | |
| AAAAGGATTGTGGAAGTGAA+TGG | - | chr6_4:80386442-80386461 | None:intergenic | 35.0% | |
| !!! | TTTATGGTTTTGGTAGAACG+CGG | + | chr6_4:80386462-80386481 | Msa0998890:intron | 35.0% |
| TCATACCTGCAAATCATTAC+AGG | - | chr6_4:80386603-80386622 | None:intergenic | 35.0% | |
| CAACATCATTATTGCAGTAG+TGG | - | chr6_4:80386855-80386874 | None:intergenic | 35.0% | |
| ATGATGTTGTATTTGGACGT+CGG | + | chr6_4:80386866-80386885 | Msa0998890:intron | 35.0% | |
| !!! | ACACTTTTAGTTCTTCTGTC+TGG | + | chr6_4:80386932-80386951 | Msa0998890:intron | 35.0% |
| TCTGTCTGGTACTCAATATT+AGG | + | chr6_4:80386946-80386965 | Msa0998890:intron | 35.0% | |
| CTGGTACTCAATATTAGGTT+TGG | + | chr6_4:80386951-80386970 | Msa0998890:intron | 35.0% | |
| ! | TGCTGCTTATAGATCTTGTT+TGG | + | chr6_4:80386983-80387002 | Msa0998890:intron | 35.0% |
| TGTTTGGTACTAATATTGCG+TGG | + | chr6_4:80386999-80387018 | Msa0998890:intron | 35.0% | |
| CAATAAAAGCCTAAGAAGCA+AGG | - | chr6_4:80387040-80387059 | None:intergenic | 35.0% | |
| TTCAAGGAAGAAAATCAGCA+AGG | + | chr6_4:80387148-80387167 | Msa0998890:CDS | 35.0% | |
| AAGAAAATCAGCAAGGACAA+GGG | + | chr6_4:80387155-80387174 | Msa0998890:CDS | 35.0% | |
| ! | ACTATTGTTGTTGCTGTGAT+TGG | + | chr6_4:80387236-80387255 | Msa0998890:intron | 35.0% |
| TACATCAATTCTGCAGTGTA+AGG | + | chr6_4:80387375-80387394 | Msa0998890:intron | 35.0% | |
| GTGTAAGGATGTGTTCTTTA+TGG | + | chr6_4:80387390-80387409 | Msa0998890:intron | 35.0% | |
| TGGCTGTAGATAACAGAAAA+CGG | - | chr6_4:80387458-80387477 | None:intergenic | 35.0% | |
| GTGCAGTTAGAAAGAATAAC+TGG | - | chr6_4:80387627-80387646 | None:intergenic | 35.0% | |
| CGAGTAGAAGACAAAGAAAT+TGG | - | chr6_4:80387690-80387709 | None:intergenic | 35.0% | |
| ! | ATTCTGTTTTGCAATCTCCT+TGG | + | chr6_4:80387738-80387757 | Msa0998890:intron | 35.0% |
| GTCTAAGCATGTGTTTGATT+TGG | + | chr6_4:80387837-80387856 | Msa0998890:intron | 35.0% | |
| GATAAAGAGAAGCTACAAAG+TGG | - | chr6_4:80387912-80387931 | None:intergenic | 35.0% | |
| CGTACTAGATACAGAATTGA+TGG | + | chr6_4:80388247-80388266 | Msa0998890:CDS | 35.0% | |
| ! | TCTTGTGGTTCTGTGTATAT+AGG | + | chr6_4:80388466-80388485 | Msa0998890:intron | 35.0% |
| ! | AAACGTTTTCTGCAGTTTAC+AGG | + | chr6_4:80388534-80388553 | Msa0998890:CDS | 35.0% |
| ATCTGCATCTTCTTCAGCTA+AGG | + | chr6_4:80385316-80385335 | Msa0998890:five_prime_UTR | 40.0% | |
| AAGCCTTTATCCCACTAAGT+GGG | + | chr6_4:80385850-80385869 | Msa0998890:intron | 40.0% | |
| AGCATGTATGGATAAACAGC+TGG | - | chr6_4:80385999-80386018 | None:intergenic | 40.0% | |
| GCAATTTGCGGTGTAATAGT+AGG | + | chr6_4:80386333-80386352 | Msa0998890:intron | 40.0% | |
| !!! | TTATGGTTTTGGTAGAACGC+GGG | + | chr6_4:80386463-80386482 | Msa0998890:intron | 40.0% |
| GGTCTGTTAAAGACTCATCA+CGG | - | chr6_4:80386582-80386601 | None:intergenic | 40.0% | |
| ! | ACAGACCTGTAATGATTTGC+AGG | + | chr6_4:80386595-80386614 | Msa0998890:intron | 40.0% |
| TGATGTTGTATTTGGACGTC+GGG | + | chr6_4:80386867-80386886 | Msa0998890:intron | 40.0% | |
| ! | TGATGATGACCTTGCTTCTT+AGG | + | chr6_4:80387028-80387047 | Msa0998890:intron | 40.0% |
| GAAGAAAATCAGCAAGGACA+AGG | + | chr6_4:80387154-80387173 | Msa0998890:CDS | 40.0% | |
| ! | ACTGACTCCTCAAATTCAGT+AGG | - | chr6_4:80387188-80387207 | None:intergenic | 40.0% |
| ACTGAATTTGAGGAGTCAGT+TGG | + | chr6_4:80387188-80387207 | Msa0998890:CDS | 40.0% | |
| !! | TACAGCCAAGTTGATGTTTC+TGG | + | chr6_4:80387470-80387489 | Msa0998890:intron | 40.0% |
| GGTTTCCAGAAACATCAACT+TGG | - | chr6_4:80387478-80387497 | None:intergenic | 40.0% | |
| AAATTCACGTCAAGCTCGTT+AGG | + | chr6_4:80387549-80387568 | Msa0998890:CDS | 40.0% | |
| AATTCACGTCAAGCTCGTTA+GGG | + | chr6_4:80387550-80387569 | Msa0998890:CDS | 40.0% | |
| GAGCTTGAGAAGAAATTCAG+CGG | + | chr6_4:80387572-80387591 | Msa0998890:CDS | 40.0% | |
| TGAGAAGAAATTCAGCGGAA+AGG | + | chr6_4:80387577-80387596 | Msa0998890:CDS | 40.0% | |
| AACTGAAGTTAATCAGGCTG+CGG | + | chr6_4:80387815-80387834 | Msa0998890:intron | 40.0% | |
| TGTTACCTGCTGAGATTGTT+GGG | + | chr6_4:80388221-80388240 | Msa0998890:CDS | 40.0% | |
| ! | TGATGGATCCAAGATCATGA+AGG | + | chr6_4:80388264-80388283 | Msa0998890:CDS | 40.0% |
| !!! | ATAGGTGTTTTTGGACCCAA+AGG | + | chr6_4:80388484-80388503 | Msa0998890:intron | 40.0% |
| CAGTTTACAGGAAACTCTCA+GGG | + | chr6_4:80388546-80388565 | Msa0998890:CDS | 40.0% | |
| GTTGAAGCTCTCTATGATTC+TGG | + | chr6_4:80388681-80388700 | Msa0998890:three_prime_UTR | 40.0% | |
| AGCTGAAGAAGATGCAGATG+CGG | - | chr6_4:80385315-80385334 | None:intergenic | 45.0% | |
| CAAGAATCTTAGGGCCTGTT+TGG | + | chr6_4:80385587-80385606 | Msa0998890:intron | 45.0% | |
| ATCTTAGGGCCTGTTTGGAT+TGG | + | chr6_4:80385592-80385611 | Msa0998890:intron | 45.0% | |
| CACTTAGTGGGATAAAGGCT+TGG | - | chr6_4:80385851-80385870 | None:intergenic | 45.0% | |
| CAAGCCTTTATCCCACTAAG+TGG | + | chr6_4:80385849-80385868 | Msa0998890:intron | 45.0% | |
| AGCCTTTATCCCACTAAGTG+GGG | + | chr6_4:80385851-80385870 | Msa0998890:intron | 45.0% | |
| TTTATCCCACTAAGTGGGGT+CGG | + | chr6_4:80385855-80385874 | Msa0998890:intron | 45.0% | |
| TCAAGGGAACGAGTCTGAAT+GGG | - | chr6_4:80386393-80386412 | None:intergenic | 45.0% | |
| TTCAAGGGAACGAGTCTGAA+TGG | - | chr6_4:80386394-80386413 | None:intergenic | 45.0% | |
| TAGCGAGGGGACACATTTAT+AGG | - | chr6_4:80386831-80386850 | None:intergenic | 45.0% | |
| !! | ATTGCAGTAGTGGATAGCGA+GGG | - | chr6_4:80386845-80386864 | None:intergenic | 45.0% |
| !! | TATTGCAGTAGTGGATAGCG+AGG | - | chr6_4:80386846-80386865 | None:intergenic | 45.0% |
| GATGTTGTATTTGGACGTCG+GGG | + | chr6_4:80386868-80386887 | Msa0998890:intron | 45.0% | |
| ATTTGAGGAGTCAGTTGGAC+AGG | + | chr6_4:80387193-80387212 | Msa0998890:CDS | 45.0% | |
| !! | GTTGCAGGCTTTGTTTGATC+TGG | + | chr6_4:80387311-80387330 | Msa0998890:intron | 45.0% |
| !! | TCAGCTCACTTTTGAGCTCA+TGG | - | chr6_4:80387347-80387366 | None:intergenic | 45.0% |
| !! | TGATGTTTCTGGAAACCGCA+AGG | + | chr6_4:80387481-80387500 | Msa0998890:CDS | 45.0% |
| AACCCCTTCCTCAATCTGTA+GGG | - | chr6_4:80387524-80387543 | None:intergenic | 45.0% | |
| ! | CGAGCTTGACGTGAATTTTG+CGG | - | chr6_4:80387547-80387566 | None:intergenic | 45.0% |
| TTGCCACTCGCATGATTACA+AGG | - | chr6_4:80387950-80387969 | None:intergenic | 45.0% | |
| ATGTAATCCTCATTGCCACC+AGG | + | chr6_4:80388104-80388123 | Msa0998890:CDS | 45.0% | |
| GTGTTACCTGCTGAGATTGT+TGG | + | chr6_4:80388220-80388239 | Msa0998890:CDS | 45.0% | |
| GCAGTTTACAGGAAACTCTC+AGG | + | chr6_4:80388545-80388564 | Msa0998890:CDS | 45.0% | |
| GTTTGAGTACCCTGTTACTG+AGG | + | chr6_4:80388580-80388599 | Msa0998890:CDS | 45.0% | |
| GAATCTACGCCTCAGTAACA+GGG | - | chr6_4:80388592-80388611 | None:intergenic | 45.0% | |
| AGAATCTACGCCTCAGTAAC+AGG | - | chr6_4:80388593-80388612 | None:intergenic | 45.0% | |
| CAGGCCCTAAGATTCTTGAC+AGG | - | chr6_4:80385585-80385604 | None:intergenic | 50.0% | |
| GACCCCACTTAGTGGGATAA+AGG | - | chr6_4:80385856-80385875 | None:intergenic | 50.0% | |
| GCTTCACTATCTGGTCGATG+CGG | + | chr6_4:80386355-80386374 | Msa0998890:intron | 50.0% | |
| !! | TTGCAGTAGTGGATAGCGAG+GGG | - | chr6_4:80386844-80386863 | None:intergenic | 50.0% |
| CGCTGAGCCTACTGAATTTG+AGG | + | chr6_4:80387178-80387197 | Msa0998890:CDS | 50.0% | |
| CATGGATAACCACAGCCTTG+CGG | - | chr6_4:80387499-80387518 | None:intergenic | 50.0% | |
| TCCATGTCCCCTACAGATTG+AGG | + | chr6_4:80387513-80387532 | Msa0998890:CDS | 50.0% | |
| TCCTCAATCTGTAGGGGACA+TGG | - | chr6_4:80387517-80387536 | None:intergenic | 50.0% | |
| TGTCCCCTACAGATTGAGGA+AGG | + | chr6_4:80387517-80387536 | Msa0998890:CDS | 50.0% | |
| GTCCCCTACAGATTGAGGAA+GGG | + | chr6_4:80387518-80387537 | Msa0998890:CDS | 50.0% | |
| TCCCCTACAGATTGAGGAAG+GGG | + | chr6_4:80387519-80387538 | Msa0998890:CDS | 50.0% | |
| ACCCCTTCCTCAATCTGTAG+GGG | - | chr6_4:80387523-80387542 | None:intergenic | 50.0% | |
| GAACCCCTTCCTCAATCTGT+AGG | - | chr6_4:80387525-80387544 | None:intergenic | 50.0% | |
| GTGCCTTGTAATCATGCGAG+TGG | + | chr6_4:80387944-80387963 | Msa0998890:intron | 50.0% | |
| ATCGTCAGGCCACCAAAGAA+AGG | + | chr6_4:80388130-80388149 | Msa0998890:CDS | 50.0% | |
| CGTTTCCCAACAATCTCAGC+AGG | - | chr6_4:80388229-80388248 | None:intergenic | 50.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr6_4:80385863-80385882 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr6_4:80385864-80385883 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr6_4:80385863-80385882 | Msa0998890:intron | 55.0% | |
| ! | TTCTGGAAACCGCAAGGCTG+TGG | + | chr6_4:80387487-80387506 | Msa0998890:CDS | 55.0% |
| CGATTCTCCTGGTGGCAATG+AGG | - | chr6_4:80388114-80388133 | None:intergenic | 55.0% | |
| TTGCCACCAGGAGAATCGTC+AGG | + | chr6_4:80388116-80388135 | Msa0998890:CDS | 55.0% | |
| TGAGCAGCGGAGCCTTTCTT+TGG | - | chr6_4:80388145-80388164 | None:intergenic | 55.0% | |
| CGTGGACAGCAGTGAGTGTA+CGG | - | chr6_4:80388180-80388199 | None:intergenic | 55.0% | |
| TACACTCACTGCTGTCCACG+AGG | + | chr6_4:80388180-80388199 | Msa0998890:CDS | 55.0% | |
| TGGCCTGACGATTCTCCTGG+TGG | - | chr6_4:80388122-80388141 | None:intergenic | 60.0% | |
| TGGTGGCCTGACGATTCTCC+TGG | - | chr6_4:80388125-80388144 | None:intergenic | 60.0% | |
| GCAGCGGAGCCTTTCTTTGG+TGG | - | chr6_4:80388142-80388161 | None:intergenic | 60.0% | |
| TGTCCACGAGGCAATGCTCG+AGG | + | chr6_4:80388192-80388211 | Msa0998890:CDS | 60.0% | |
| ! | CATCCTCGAGCATTGCCTCG+TGG | - | chr6_4:80388198-80388217 | None:intergenic | 60.0% |
| GCAGTGAGTGTACGGCTGCG+TGG | - | chr6_4:80388172-80388191 | None:intergenic | 65.0% | |
| GCTGCGTGGACGCTGAGCAG+CGG | - | chr6_4:80388158-80388177 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 80385137 | 80388892 | 80385137 | ID=Msa0998890;Name=Msa0998890 |
| chr6_4 | mRNA | 80385137 | 80388892 | 80385137 | ID=Msa0998890-mRNA-1;Parent=Msa0998890;Name=Msa0998890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=216|1|1|1|0.8|0.66|6|285|191 |
| chr6_4 | exon | 80385137 | 80385337 | 80385137 | ID=Msa0998890-mRNA-1:exon:15219;Parent=Msa0998890-mRNA-1 |
| chr6_4 | exon | 80387125 | 80387214 | 80387125 | ID=Msa0998890-mRNA-1:exon:15220;Parent=Msa0998890-mRNA-1 |
| chr6_4 | exon | 80387318 | 80387391 | 80387318 | ID=Msa0998890-mRNA-1:exon:15221;Parent=Msa0998890-mRNA-1 |
| chr6_4 | exon | 80387475 | 80387598 | 80387475 | ID=Msa0998890-mRNA-1:exon:15222;Parent=Msa0998890-mRNA-1 |
| chr6_4 | exon | 80388103 | 80388285 | 80388103 | ID=Msa0998890-mRNA-1:exon:15223;Parent=Msa0998890-mRNA-1 |
| chr6_4 | exon | 80388488 | 80388892 | 80388488 | ID=Msa0998890-mRNA-1:exon:15224;Parent=Msa0998890-mRNA-1 |
| chr6_4 | five_prime_UTR | 80385137 | 80385337 | 80385137 | ID=Msa0998890-mRNA-1:five_prime_utr;Parent=Msa0998890-mRNA-1 |
| chr6_4 | five_prime_UTR | 80387125 | 80387139 | 80387125 | ID=Msa0998890-mRNA-1:five_prime_utr;Parent=Msa0998890-mRNA-1 |
| chr6_4 | CDS | 80387140 | 80387214 | 80387140 | ID=Msa0998890-mRNA-1:cds;Parent=Msa0998890-mRNA-1 |
| chr6_4 | CDS | 80387318 | 80387391 | 80387318 | ID=Msa0998890-mRNA-1:cds;Parent=Msa0998890-mRNA-1 |
| chr6_4 | CDS | 80387475 | 80387598 | 80387475 | ID=Msa0998890-mRNA-1:cds;Parent=Msa0998890-mRNA-1 |
| chr6_4 | CDS | 80388103 | 80388285 | 80388103 | ID=Msa0998890-mRNA-1:cds;Parent=Msa0998890-mRNA-1 |
| chr6_4 | CDS | 80388488 | 80388607 | 80388488 | ID=Msa0998890-mRNA-1:cds;Parent=Msa0998890-mRNA-1 |
| chr6_4 | three_prime_UTR | 80388608 | 80388892 | 80388608 | ID=Msa0998890-mRNA-1:three_prime_utr;Parent=Msa0998890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
