Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336460 | XP_003615587.1 | 94.371 | 604 | 34 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336460 | sp|A7LXU3|BGH3B_BACO1 | 30.508 | 649 | 373 | 19 | 12 | 604 | 35 | 661 | 9.94e-82 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336460 | G7K6A7 | 94.371 | 604 | 34 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0756410 | Msa1336460 | -0.803713 | 3.056423e-49 | -8.615850e-47 |
| Msa0835580 | Msa1336460 | -0.821994 | 3.002719e-53 | -8.615850e-47 |
| Msa0410960 | Msa1336460 | -0.803797 | 2.936103e-49 | -8.615850e-47 |
| Msa0852980 | Msa1336460 | 0.939228 | 1.807974e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336460 | MtrunA17_Chr5g0429581 | 94.371 | 604 | 34 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1186 |
| Msa1336460 | MtrunA17_Chr5g0429541 | 90.066 | 604 | 46 | 1 | 1 | 604 | 1 | 590 | 0.0 | 1125 |
| Msa1336460 | MtrunA17_Chr3g0104081 | 75.041 | 605 | 149 | 2 | 1 | 605 | 18 | 620 | 0.0 | 954 |
| Msa1336460 | MtrunA17_Chr6g0461191 | 55.648 | 602 | 254 | 5 | 5 | 601 | 28 | 621 | 0.0 | 691 |
| Msa1336460 | MtrunA17_Chr6g0461221 | 55.408 | 601 | 255 | 5 | 5 | 600 | 29 | 621 | 0.0 | 679 |
| Msa1336460 | MtrunA17_Chr3g0118971 | 54.833 | 600 | 266 | 4 | 5 | 603 | 28 | 623 | 0.0 | 676 |
| Msa1336460 | MtrunA17_Chr6g0461211 | 55.907 | 601 | 252 | 5 | 5 | 600 | 28 | 620 | 0.0 | 676 |
| Msa1336460 | MtrunA17_Chr2g0292341 | 54.941 | 597 | 264 | 4 | 5 | 600 | 30 | 622 | 0.0 | 669 |
| Msa1336460 | MtrunA17_Chr6g0461231 | 54.243 | 601 | 262 | 5 | 5 | 600 | 28 | 620 | 0.0 | 665 |
| Msa1336460 | MtrunA17_Chr7g0253561 | 53.512 | 598 | 273 | 4 | 5 | 601 | 4 | 597 | 0.0 | 660 |
| Msa1336460 | MtrunA17_Chr7g0253551 | 51.242 | 443 | 208 | 2 | 5 | 447 | 29 | 463 | 1.28e-164 | 478 |
| Msa1336460 | MtrunA17_Chr5g0425531 | 25.645 | 659 | 367 | 25 | 5 | 604 | 50 | 644 | 1.89e-39 | 154 |
| Msa1336460 | MtrunA17_Chr5g0425451 | 25.613 | 652 | 373 | 26 | 5 | 604 | 50 | 641 | 7.36e-38 | 149 |
| Msa1336460 | MtrunA17_Chr5g0425431 | 25.153 | 652 | 376 | 25 | 5 | 604 | 48 | 639 | 1.02e-37 | 149 |
| Msa1336460 | MtrunA17_Chr5g0425471 | 25.346 | 651 | 376 | 24 | 5 | 604 | 50 | 641 | 4.40e-37 | 147 |
| Msa1336460 | MtrunA17_Chr3g0115601 | 25.496 | 655 | 366 | 24 | 5 | 602 | 44 | 633 | 8.13e-37 | 146 |
| Msa1336460 | MtrunA17_Chr7g0269871 | 26.049 | 572 | 331 | 25 | 93 | 604 | 86 | 625 | 7.83e-34 | 137 |
| Msa1336460 | MtrunA17_Chr4g0050591 | 26.825 | 630 | 348 | 28 | 5 | 592 | 54 | 612 | 9.64e-34 | 137 |
| Msa1336460 | MtrunA17_Chr1g0194841 | 25.610 | 574 | 332 | 24 | 93 | 604 | 81 | 621 | 2.72e-31 | 129 |
| Msa1336460 | MtrunA17_Chr2g0278761 | 25.719 | 626 | 360 | 26 | 5 | 592 | 55 | 613 | 3.07e-29 | 123 |
| Msa1336460 | MtrunA17_Chr1g0207281 | 25.043 | 587 | 350 | 28 | 85 | 608 | 89 | 648 | 1.12e-27 | 118 |
| Msa1336460 | MtrunA17_Chr2g0294751 | 25.220 | 567 | 355 | 22 | 86 | 603 | 77 | 623 | 2.37e-27 | 117 |
| Msa1336460 | MtrunA17_Chr5g0411571 | 24.324 | 629 | 336 | 26 | 5 | 573 | 42 | 590 | 2.36e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336460 | AT3G47000.1 | 69.398 | 598 | 179 | 3 | 4 | 600 | 9 | 603 | 0.0 | 874 |
| Msa1336460 | AT3G47010.1 | 67.055 | 601 | 194 | 3 | 4 | 603 | 10 | 607 | 0.0 | 855 |
| Msa1336460 | AT3G47040.4 | 67.110 | 602 | 194 | 3 | 4 | 604 | 9 | 607 | 0.0 | 853 |
| Msa1336460 | AT3G47010.2 | 66.889 | 601 | 194 | 4 | 4 | 603 | 10 | 606 | 0.0 | 849 |
| Msa1336460 | AT3G47040.1 | 64.434 | 627 | 194 | 4 | 4 | 604 | 9 | 632 | 0.0 | 840 |
| Msa1336460 | AT3G47050.1 | 68.220 | 601 | 179 | 5 | 4 | 600 | 9 | 601 | 0.0 | 840 |
| Msa1336460 | AT3G47040.2 | 62.205 | 635 | 203 | 6 | 4 | 604 | 9 | 640 | 0.0 | 803 |
| Msa1336460 | AT5G04885.2 | 54.682 | 598 | 265 | 5 | 4 | 600 | 46 | 638 | 0.0 | 677 |
| Msa1336460 | AT5G04885.3 | 54.682 | 598 | 265 | 5 | 4 | 600 | 29 | 621 | 0.0 | 677 |
| Msa1336460 | AT5G04885.1 | 54.682 | 598 | 265 | 5 | 4 | 600 | 29 | 621 | 0.0 | 677 |
| Msa1336460 | AT3G47000.3 | 70.814 | 442 | 128 | 1 | 4 | 445 | 9 | 449 | 0.0 | 671 |
| Msa1336460 | AT3G47010.4 | 67.873 | 442 | 141 | 1 | 4 | 445 | 10 | 450 | 0.0 | 647 |
| Msa1336460 | AT3G47040.3 | 67.647 | 442 | 142 | 1 | 4 | 445 | 9 | 449 | 0.0 | 645 |
| Msa1336460 | AT3G47000.2 | 69.860 | 428 | 126 | 2 | 174 | 600 | 1 | 426 | 0.0 | 640 |
| Msa1336460 | AT5G20950.3 | 52.764 | 597 | 276 | 5 | 5 | 600 | 104 | 695 | 0.0 | 633 |
| Msa1336460 | AT5G20950.2 | 52.764 | 597 | 276 | 5 | 5 | 600 | 26 | 617 | 0.0 | 632 |
| Msa1336460 | AT5G20950.1 | 52.764 | 597 | 276 | 5 | 5 | 600 | 26 | 617 | 0.0 | 632 |
| Msa1336460 | AT3G47010.3 | 66.589 | 431 | 140 | 3 | 174 | 603 | 1 | 428 | 0.0 | 619 |
| Msa1336460 | AT5G20940.1 | 51.581 | 601 | 281 | 6 | 2 | 600 | 29 | 621 | 0.0 | 607 |
| Msa1336460 | AT3G47050.2 | 67.639 | 377 | 115 | 2 | 4 | 377 | 9 | 381 | 0.0 | 539 |
| Msa1336460 | AT3G62710.1 | 46.582 | 629 | 285 | 14 | 5 | 600 | 38 | 648 | 0.0 | 531 |
| Msa1336460 | AT1G02640.1 | 26.770 | 579 | 330 | 25 | 86 | 602 | 80 | 626 | 1.02e-32 | 134 |
| Msa1336460 | AT5G64570.1 | 25.493 | 608 | 345 | 23 | 5 | 573 | 59 | 597 | 1.91e-30 | 127 |
| Msa1336460 | AT5G49360.1 | 24.642 | 629 | 380 | 24 | 12 | 602 | 56 | 628 | 5.30e-30 | 126 |
| Msa1336460 | AT3G19620.1 | 24.085 | 656 | 376 | 29 | 5 | 604 | 41 | 630 | 9.97e-30 | 125 |
| Msa1336460 | AT5G09730.1 | 23.994 | 621 | 366 | 20 | 5 | 587 | 49 | 601 | 3.90e-28 | 120 |
| Msa1336460 | AT1G78060.1 | 25.704 | 533 | 328 | 22 | 86 | 573 | 74 | 583 | 6.53e-27 | 116 |
| Msa1336460 | AT5G10560.1 | 24.642 | 629 | 345 | 26 | 5 | 573 | 42 | 601 | 1.12e-26 | 115 |
| Msa1336460 | AT5G64570.3 | 24.595 | 618 | 358 | 23 | 5 | 583 | 59 | 607 | 1.84e-26 | 114 |
Find 153 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | tig0001210:-58292 | Msa1336460:CDS |
| GACATGACTTCTTATGTTTC+AGG | 0.158804 | tig0001210:-61246 | Msa1336460:CDS |
| TTCTTAGCAGTTGCACTATT+TGG | 0.179068 | tig0001210:+61923 | None:intergenic |
| GAACTTGTAATCCCATTTAA+TGG | 0.213541 | tig0001210:-58574 | Msa1336460:CDS |
| CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | tig0001210:-58291 | Msa1336460:CDS |
| ACAATTCCAGCTCCATTAAA+TGG | 0.228949 | tig0001210:+58562 | None:intergenic |
| ATGAATTGTTCATATCTTAA+AGG | 0.230899 | tig0001210:+60301 | None:intergenic |
| TCATTACGTTCTATGAATTC+TGG | 0.242355 | tig0001210:+58661 | None:intergenic |
| CCCATAACCAAGAGGGAATA+AGG | 0.250774 | tig0001210:+58291 | None:intergenic |
| AATTTCAGGCACAACTATAT+TGG | 0.253170 | tig0001210:-58743 | Msa1336460:intron |
| AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | tig0001210:+60169 | None:intergenic |
| GGAACTAAGTTCATAAATTA+AGG | 0.291783 | tig0001210:-62314 | Msa1336460:five_prime_UTR |
| TAGTAACAGAACGTTCAATT+TGG | 0.293059 | tig0001210:+62101 | None:intergenic |
| ACCAATGGTGAAATCTTTAA+TGG | 0.307869 | tig0001210:+62069 | None:intergenic |
| GCATCAGTACAATAAATTAT+TGG | 0.314084 | tig0001210:+61827 | None:intergenic |
| TTTAAGATATGAACAATTCA+TGG | 0.320591 | tig0001210:-60299 | Msa1336460:CDS |
| ACAAGCTGTTTCAACCATTA+TGG | 0.332210 | tig0001210:-60918 | Msa1336460:CDS |
| GGAGATGGAGGTACAGAAAA+AGG | 0.336684 | tig0001210:-61019 | Msa1336460:CDS |
| TTTAACTGACAGATCTTTGC+TGG | 0.339407 | tig0001210:-60167 | Msa1336460:CDS |
| ACACTTGTGATTCTAATATC+TGG | 0.340592 | tig0001210:-58514 | Msa1336460:CDS |
| GATGAATTATGTCAACCTTA+TGG | 0.341677 | tig0001210:-60467 | Msa1336460:CDS |
| GGATGGACATTTACTAAGTA+TGG | 0.343875 | tig0001210:-59013 | Msa1336460:CDS |
| CATGTCAATTCCAGCATTAA+TGG | 0.351444 | tig0001210:+60415 | None:intergenic |
| AGTCATGTCTTGGACAATTT+CGG | 0.358561 | tig0001210:+61260 | None:intergenic |
| CACGGTAACAATAACGTCTA+TGG | 0.361228 | tig0001210:-61800 | Msa1336460:CDS |
| GTCATCTGATTGGGCTGATA+TGG | 0.362204 | tig0001210:-61894 | Msa1336460:CDS |
| GGAACTCATGCTGATGATAT+CGG | 0.371576 | tig0001210:-59049 | Msa1336460:CDS |
| GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | tig0001210:+61183 | None:intergenic |
| TAATTTATGAACTTAGTTCC+AGG | 0.377745 | tig0001210:+62317 | None:intergenic |
| CTCTTGGCGTTCTTATTCAA+TGG | 0.379608 | tig0001210:+59085 | None:intergenic |
| AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | tig0001210:-61192 | Msa1336460:CDS |
| AGGTCTGCAAAGATCCTAGA+TGG | 0.390671 | tig0001210:-61314 | Msa1336460:CDS |
| TCTAATATCTGGAAGACCTT+TGG | 0.393745 | tig0001210:-58503 | Msa1336460:CDS |
| CCATAACCAAGAGGGAATAA+GGG | 0.403111 | tig0001210:+58292 | None:intergenic |
| GCCAAGAGAATCCTTGTTGC+TGG | 0.408515 | tig0001210:-59070 | Msa1336460:CDS |
| ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | tig0001210:-58497 | Msa1336460:CDS |
| GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | tig0001210:-61191 | Msa1336460:CDS |
| CTTGTTGCGGCATGGTTGCC+TGG | 0.414148 | tig0001210:-58445 | Msa1336460:CDS |
| TTAGCAGTTGCACTATTTGG+TGG | 0.417251 | tig0001210:+61926 | None:intergenic |
| GAAAGAAAAGCTAGGCTTCA+AGG | 0.425811 | tig0001210:-60831 | Msa1336460:intron |
| GGAATCACAGATGTTATCTT+CGG | 0.427323 | tig0001210:-58409 | Msa1336460:CDS |
| GCATCATCAATCCTGGCTAT+TGG | 0.427539 | tig0001210:+60241 | None:intergenic |
| CATGAATTCACTCCTTCAAC+AGG | 0.428141 | tig0001210:+58322 | None:intergenic |
| GCCATTAAAGATTTCACCAT+TGG | 0.428169 | tig0001210:-62070 | Msa1336460:intron |
| CTTCGGGGATCATGACTTCA+AGG | 0.430718 | tig0001210:-58392 | Msa1336460:CDS |
| AGAAGGAAGTGTCATCTGAT+TGG | 0.432915 | tig0001210:-61904 | Msa1336460:CDS |
| CGAGCTTCAACCGTTTCAGC+AGG | 0.434983 | tig0001210:+62178 | None:intergenic |
| GTTCTATGAATTCTGGTGTT+GGG | 0.439975 | tig0001210:+58668 | None:intergenic |
| GTAATCCCATTTAATGGAGC+TGG | 0.440659 | tig0001210:-58568 | Msa1336460:CDS |
| AGTAACAGAACGTTCAATTT+GGG | 0.442472 | tig0001210:+62102 | None:intergenic |
| GAATCACAGATGTTATCTTC+GGG | 0.443316 | tig0001210:-58408 | Msa1336460:CDS |
| GATGACCCCTTATTCCCTCT+TGG | 0.445616 | tig0001210:-58298 | Msa1336460:CDS |
| CAATTCCAGCTCCATTAAAT+GGG | 0.449727 | tig0001210:+58563 | None:intergenic |
| ATGACTTTGAAAGAGAAGAT+TGG | 0.449827 | tig0001210:-62133 | Msa1336460:CDS |
| TCATAGCATCTTCCCCATCT+AGG | 0.450563 | tig0001210:+61300 | None:intergenic |
| TATTGTACTGATGCTATTCA+CGG | 0.453578 | tig0001210:-61818 | Msa1336460:CDS |
| AACTATATTGGATGCTGCTA+AGG | 0.453736 | tig0001210:-58731 | Msa1336460:CDS |
| TTTCCTCACAACGTTGGCCT+CGG | 0.456574 | tig0001210:-61767 | Msa1336460:CDS |
| GAAGGAAGTGTCATCTGATT+GGG | 0.460679 | tig0001210:-61903 | Msa1336460:CDS |
| CAGCTTGATCAACCTGTTGA+AGG | 0.461725 | tig0001210:-58334 | Msa1336460:CDS |
| AATGGAATGAAAGGTTTACT+AGG | 0.464263 | tig0001210:+59103 | None:intergenic |
| AAATAGTGCAACTGCTAAGA+AGG | 0.470452 | tig0001210:-61921 | Msa1336460:CDS |
| TCAAAGTCATAAGAGAAAGA+AGG | 0.472645 | tig0001210:+62146 | None:intergenic |
| TGCTAAGGATGCTGTGGGAC+AGG | 0.475726 | tig0001210:-58716 | Msa1336460:CDS |
| TGAAGCAGTTCGAAAGTCCT+TGG | 0.476629 | tig0001210:-59149 | Msa1336460:CDS |
| GATATTAGAATCACAAGTGT+TGG | 0.476636 | tig0001210:+58517 | None:intergenic |
| TTGATGTCCAAATGGTGAAA+AGG | 0.480682 | tig0001210:+62286 | None:intergenic |
| GTTGACATCTCTAGTTCAAT+CGG | 0.480782 | tig0001210:-60272 | Msa1336460:CDS |
| TTCTTATTCAATGGAATGAA+AGG | 0.484516 | tig0001210:+59094 | None:intergenic |
| GAACTCATGCTGATGATATC+GGG | 0.485480 | tig0001210:-59048 | Msa1336460:CDS |
| TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | tig0001210:-61196 | Msa1336460:CDS |
| TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | tig0001210:-58989 | Msa1336460:intron |
| GTCTCATATTCCAGCTGGAA+TGG | 0.487762 | tig0001210:-60896 | Msa1336460:CDS |
| TCACCTCCACACTCAGCATA+GGG | 0.490280 | tig0001210:+58604 | None:intergenic |
| CGTTCTATGAATTCTGGTGT+TGG | 0.490481 | tig0001210:+58667 | None:intergenic |
| TTGACATCTCTAGTTCAATC+GGG | 0.490633 | tig0001210:-60271 | Msa1336460:CDS |
| ATATTAGAATCACAAGTGTT+GGG | 0.490789 | tig0001210:+58518 | None:intergenic |
| ACTCTTCTAAACCAAGTCAT+TGG | 0.496062 | tig0001210:+58361 | None:intergenic |
| GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | tig0001210:+61195 | None:intergenic |
| TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | tig0001210:+59069 | None:intergenic |
| ATTCCATTTCCTTCACTACC+AGG | 0.500207 | tig0001210:+58427 | None:intergenic |
| GATCCACATGGCCCCGTATG+TGG | 0.501410 | tig0001210:-60951 | Msa1336460:CDS |
| AAGGCTAACCAATTGTGATC+TGG | 0.501758 | tig0001210:+58981 | None:intergenic |
| GATTGGGCTGATATGGTTGA+CGG | 0.503500 | tig0001210:-61887 | Msa1336460:CDS |
| AAACATAAGAAGTCATGTCT+TGG | 0.503886 | tig0001210:+61250 | None:intergenic |
| CTCAACGGCATCATCAATCC+TGG | 0.505700 | tig0001210:+60234 | None:intergenic |
| TTATGGTCTCATATTCCAGC+TGG | 0.513411 | tig0001210:-60901 | Msa1336460:CDS |
| ATATCTACTTCCATTAATGC+TGG | 0.513950 | tig0001210:-60425 | Msa1336460:CDS |
| TAACGATAATCTGAACCATA+AGG | 0.514827 | tig0001210:+60452 | None:intergenic |
| CTGGCGCTTGAATCACGGTT+AGG | 0.517230 | tig0001210:-61854 | Msa1336460:CDS |
| AGATCTTTGCTGGATACTGT+TGG | 0.518240 | tig0001210:-60157 | Msa1336460:CDS |
| CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | tig0001210:+61184 | None:intergenic |
| GCTGGATACTGTTGGTTGCA+AGG | 0.519750 | tig0001210:-60149 | Msa1336460:intron |
| GAGTTTGACTCCATTCCAGC+TGG | 0.521515 | tig0001210:+60886 | None:intergenic |
| TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | tig0001210:-61485 | Msa1336460:CDS |
| TTTGTGATTTCTGACTGGGA+GGG | 0.536472 | tig0001210:-60494 | Msa1336460:CDS |
| AATTTATGAACTTAGTTCCA+GGG | 0.540408 | tig0001210:+62318 | None:intergenic |
| AGGGTAAACTACCAATGACT+TGG | 0.544683 | tig0001210:-58372 | Msa1336460:CDS |
| CTGCAGAGTTGATGTCCAAA+TGG | 0.545198 | tig0001210:+62278 | None:intergenic |
| GTTCTATACAATCCACATAC+GGG | 0.546133 | tig0001210:+60939 | None:intergenic |
| GCTGGAATATGAGACCATAA+TGG | 0.546993 | tig0001210:+60904 | None:intergenic |
| AACCTCCAGAAAATCATCCA+AGG | 0.549496 | tig0001210:-61212 | Msa1336460:CDS |
| TGTTCTATACAATCCACATA+CGG | 0.551403 | tig0001210:+60938 | None:intergenic |
| TCTTATGTTTCAGGTTTGCA+AGG | 0.552090 | tig0001210:-61237 | Msa1336460:CDS |
| GTGAAATCTTTAATGGCAGA+AGG | 0.554246 | tig0001210:+62076 | None:intergenic |
| TCGGGTATCAATGTGGAGGA+TGG | 0.556709 | tig0001210:-59030 | Msa1336460:CDS |
| CATTAATGCTGGAATTGACA+TGG | 0.559007 | tig0001210:-60414 | Msa1336460:intron |
| TATAATATAAGTGCGTGCCC+TGG | 0.559895 | tig0001210:-62335 | Msa1336460:five_prime_UTR |
| GGATGCTGCTAAGGATGCTG+TGG | 0.564728 | tig0001210:-58722 | Msa1336460:CDS |
| GTATATGAATCCTGCTGAAA+CGG | 0.566527 | tig0001210:-62188 | Msa1336460:CDS |
| TTGCCTGGTAGTGAAGGAAA+TGG | 0.568579 | tig0001210:-58430 | Msa1336460:CDS |
| TCCAACAAAATGTCTAGCAC+AGG | 0.571832 | tig0001210:+61039 | None:intergenic |
| TAGAAGCTCTTGTTGCGGCA+TGG | 0.572751 | tig0001210:-58453 | Msa1336460:CDS |
| GGCTTCACCAATAGCAACAA+TGG | 0.575663 | tig0001210:+58627 | None:intergenic |
| CAAGAACTAAGTCAGTTACA+TGG | 0.580003 | tig0001210:-62218 | Msa1336460:exon |
| AGAAGCTGGCGCTTGAATCA+CGG | 0.580598 | tig0001210:-61859 | Msa1336460:CDS |
| CACTCTTAAAATCCGCTCAA+CGG | 0.581745 | tig0001210:+60219 | None:intergenic |
| GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | tig0001210:-61188 | Msa1336460:intron |
| GGTCTGCAAAGATCCTAGAT+GGG | 0.587399 | tig0001210:-61313 | Msa1336460:CDS |
| CAGCATGAGTTCCAGCAACA+AGG | 0.588717 | tig0001210:+59059 | None:intergenic |
| ACCTCCAGAAAATCATCCAA+GGG | 0.588939 | tig0001210:-61211 | Msa1336460:CDS |
| GTCACCTCCACACTCAGCAT+AGG | 0.590732 | tig0001210:+58603 | None:intergenic |
| GCTCCGAGGCCAACGTTGTG+AGG | 0.591912 | tig0001210:+61764 | None:intergenic |
| ACTATATTTCCTCACAACGT+TGG | 0.594556 | tig0001210:-61773 | Msa1336460:CDS |
| TTTACTAAGTATGGATCTAG+TGG | 0.597699 | tig0001210:-59004 | Msa1336460:CDS |
| ACCTCCACACTCAGCATAGG+GGG | 0.603901 | tig0001210:+58606 | None:intergenic |
| ACTAAGTTCATAAATTAAGG+TGG | 0.606328 | tig0001210:-62311 | Msa1336460:five_prime_UTR |
| AAACTTTGTTCCAAGACCAA+AGG | 0.610030 | tig0001210:+58487 | None:intergenic |
| TGGAATGGAGTCAAACTCCA+TGG | 0.613942 | tig0001210:-60881 | Msa1336460:CDS |
| CATAACCAAGAGGGAATAAG+GGG | 0.624050 | tig0001210:+58293 | None:intergenic |
| ACGTTGGCCTCGGAGCAACT+AGG | 0.636583 | tig0001210:-61757 | Msa1336460:intron |
| AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | tig0001210:+58284 | None:intergenic |
| GCATGGTTGCCTGGTAGTGA+AGG | 0.640507 | tig0001210:-58436 | Msa1336460:CDS |
| AATCCACATACGGGGCCATG+TGG | 0.640866 | tig0001210:+60948 | None:intergenic |
| GGATTGATGATGCCGTTGAG+CGG | 0.645720 | tig0001210:-60231 | Msa1336460:CDS |
| AGATGCCTTACAGATACACT+AGG | 0.649143 | tig0001210:+61443 | None:intergenic |
| TGACATCTCTAGTTCAATCG+GGG | 0.650471 | tig0001210:-60270 | Msa1336460:CDS |
| TAATCAGAAATCGATGACCA+TGG | 0.652717 | tig0001210:+60864 | None:intergenic |
| CACCTCCACACTCAGCATAG+GGG | 0.652884 | tig0001210:+58605 | None:intergenic |
| TTCGGGGATCATGACTTCAA+GGG | 0.656885 | tig0001210:-58391 | Msa1336460:CDS |
| GTCTGCAAAGATCCTAGATG+GGG | 0.658282 | tig0001210:-61312 | Msa1336460:CDS |
| TTCAGCAGGATTCATATACA+CGG | 0.662584 | tig0001210:+62192 | None:intergenic |
| AGACTTAGAGCAGATCCACA+TGG | 0.673162 | tig0001210:-60963 | Msa1336460:CDS |
| GACATCTCTAGTTCAATCGG+GGG | 0.673392 | tig0001210:-60269 | Msa1336460:CDS |
| GATGCTGCTAAGGATGCTGT+GGG | 0.685349 | tig0001210:-58721 | Msa1336460:CDS |
| AATCACAGATGTTATCTTCG+GGG | 0.692931 | tig0001210:-58407 | Msa1336460:CDS |
| TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | tig0001210:+58283 | None:intergenic |
| TTCTATACAATCCACATACG+GGG | 0.694901 | tig0001210:+60940 | None:intergenic |
| AAAAGTAGAAGCTCTTGTTG+CGG | 0.696874 | tig0001210:-58458 | Msa1336460:CDS |
| GATGATATCGGGTATCAATG+TGG | 0.699497 | tig0001210:-59037 | Msa1336460:CDS |
| CCTCCAGAAAATCATCCAAG+GGG | 0.706643 | tig0001210:-61210 | Msa1336460:CDS |
| GATATCGGGTATCAATGTGG+AGG | 0.736689 | tig0001210:-59034 | Msa1336460:CDS |
| ACACAAACCTAGTTGCTCCG+AGG | 0.747671 | tig0001210:+61750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAGAAACTTT+CGG | + | tig0001210:58302-58321 | None:intergenic | 10.0% |
| !!! | AAGTATTGATTTTTTTAAAA+CGG | + | tig0001210:59529-59548 | None:intergenic | 10.0% |
| !!! | ATTGATTAATTTGATATTTT+TGG | - | tig0001210:61123-61142 | Msa1336460:intron | 10.0% |
| !!! | TTGATTAATTTGATATTTTT+GGG | - | tig0001210:61124-61143 | Msa1336460:intron | 10.0% |
| !! | AATCTATGTTAAAATACTAT+GGG | + | tig0001210:60287-60306 | None:intergenic | 15.0% |
| !!! | AATTATCAAACGATTTTATA+CGG | + | tig0001210:60789-60808 | None:intergenic | 15.0% |
| !! | TACATTAAAAAAAGTTTATG+AGG | + | tig0001210:60950-60969 | None:intergenic | 15.0% |
| !! | AAAAATGGTTTATTAAAACT+TGG | - | tig0001210:61057-61076 | Msa1336460:intron | 15.0% |
| !! | AAAATGGTTTATTAAAACTT+GGG | - | tig0001210:61058-61077 | Msa1336460:intron | 15.0% |
| !!! | TATAGTTTTTTTTTGTTTGA+AGG | - | tig0001210:61404-61423 | Msa1336460:intron | 15.0% |
| !! | AAAGATACAAACAAATAAAA+AGG | + | tig0001210:61701-61720 | None:intergenic | 15.0% |
| !!! | TTTTAATTGTTTATATGGAT+AGG | + | tig0001210:61804-61823 | None:intergenic | 15.0% |
| !!! | TCTGTTTTTAATTGTTTATA+TGG | + | tig0001210:61809-61828 | None:intergenic | 15.0% |
| !! | TAAGAAATGAAAGTAGTATA+AGG | + | tig0001210:58650-58669 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATTTTTCATTAT+TGG | - | tig0001210:59100-59119 | Msa1336460:CDS | 20.0% |
| !! | TCAATAACAAATTCAAAAGT+TGG | + | tig0001210:59246-59265 | None:intergenic | 20.0% |
| !!! | TATTGATTTTTTTAAAACGG+TGG | + | tig0001210:59526-59545 | None:intergenic | 20.0% |
| !! | ATACATATAATTAGTACTTC+AGG | - | tig0001210:59585-59604 | Msa1336460:intron | 20.0% |
| !!! | GTAGATATATTTTTTCTTTC+TGG | - | tig0001210:59851-59870 | Msa1336460:intron | 20.0% |
| !!! | TCAAATAAAGCATTTTGTTA+AGG | - | tig0001210:60123-60142 | Msa1336460:intron | 20.0% |
| !! | ATCTATGTTAAAATACTATG+GGG | + | tig0001210:60286-60305 | None:intergenic | 20.0% |
| !! | CAATCTATGTTAAAATACTA+TGG | + | tig0001210:60288-60307 | None:intergenic | 20.0% |
| !! | ATGAATTGTTCATATCTTAA+AGG | + | tig0001210:60362-60381 | None:intergenic | 20.0% |
| !!! | TTTAAGATATGAACAATTCA+TGG | - | tig0001210:60361-60380 | Msa1336460:intron | 20.0% |
| !! | ATCATATCAAGTAACAAAAA+TGG | - | tig0001210:61042-61061 | Msa1336460:CDS | 20.0% |
| !! | AAATGGTTTATTAAAACTTG+GGG | - | tig0001210:61059-61078 | Msa1336460:intron | 20.0% |
| !! | TAATTGCATAACATTAGAAA+TGG | + | tig0001210:61746-61765 | None:intergenic | 20.0% |
| !!! | ATCAAAACAATTTTCATTGA+GGG | - | tig0001210:61836-61855 | Msa1336460:CDS | 20.0% |
| ! | AATTTATGAACTTAGTTCCA+GGG | + | tig0001210:58345-58364 | None:intergenic | 25.0% |
| ! | TAATTTATGAACTTAGTTCC+AGG | + | tig0001210:58346-58365 | None:intergenic | 25.0% |
| ! | GGAACTAAGTTCATAAATTA+AGG | - | tig0001210:58346-58365 | Msa1336460:CDS | 25.0% |
| ! | ACTAAGTTCATAAATTAAGG+TGG | - | tig0001210:58349-58368 | Msa1336460:CDS | 25.0% |
| ! | ACTACTTTCATTTCTTAGTA+TGG | - | tig0001210:58653-58672 | Msa1336460:CDS | 25.0% |
| ! | GCATCAGTACAATAAATTAT+TGG | + | tig0001210:58836-58855 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATGCAAATTAA+AGG | + | tig0001210:58965-58984 | None:intergenic | 25.0% |
| !!! | GATATTTTGAAAGAAAAGCT+AGG | - | tig0001210:59821-59840 | Msa1336460:intron | 25.0% |
| ! | AACATTCATTCTCTTCATAT+AGG | + | tig0001210:59969-59988 | None:intergenic | 25.0% |
| ! | CAAAAAACAACACAATTTGA+TGG | + | tig0001210:60674-60693 | None:intergenic | 25.0% |
| ! | AGAATACTATCAAATTTGTG+TGG | + | tig0001210:60837-60856 | None:intergenic | 25.0% |
| !!! | TTTATTTTCGTGAATACTCA+CGG | - | tig0001210:61194-61213 | Msa1336460:CDS | 25.0% |
| !! | AACAGGATTTTAAGCATTTT+GGG | + | tig0001210:61232-61251 | None:intergenic | 25.0% |
| !! | AAACAGGATTTTAAGCATTT+TGG | + | tig0001210:61233-61252 | None:intergenic | 25.0% |
| ! | ACGAAATTCATATCAAAAAC+AGG | + | tig0001210:61249-61268 | None:intergenic | 25.0% |
| ! | TTGAAAAAAATATCCCACAT+TGG | + | tig0001210:61368-61387 | None:intergenic | 25.0% |
| ! | TAAGTGTAGCAATTGAAATT+TGG | + | tig0001210:61447-61466 | None:intergenic | 25.0% |
| ! | ACACTTATGTTCTAACATAT+TGG | - | tig0001210:61460-61479 | Msa1336460:CDS | 25.0% |
| ! | TTCTTATTCAATGGAATGAA+AGG | + | tig0001210:61569-61588 | None:intergenic | 25.0% |
| !! | GATCAAAACAATTTTCATTG+AGG | - | tig0001210:61835-61854 | Msa1336460:CDS | 25.0% |
| !!! | TATTGCGCTTTTAAAATTTC+AGG | - | tig0001210:61903-61922 | Msa1336460:CDS | 25.0% |
| ! | ATATTAGAATCACAAGTGTT+GGG | + | tig0001210:62145-62164 | None:intergenic | 25.0% |
| TCAAAGTCATAAGAGAAAGA+AGG | + | tig0001210:58517-58536 | None:intergenic | 30.0% | |
| ! | ATGACTTTGAAAGAGAAGAT+TGG | - | tig0001210:58527-58546 | Msa1336460:CDS | 30.0% |
| AGTAACAGAACGTTCAATTT+GGG | + | tig0001210:58561-58580 | None:intergenic | 30.0% | |
| TAGTAACAGAACGTTCAATT+TGG | + | tig0001210:58562-58581 | None:intergenic | 30.0% | |
| ACCAATGGTGAAATCTTTAA+TGG | + | tig0001210:58594-58613 | None:intergenic | 30.0% | |
| ! | AGATAGTAATAGAGTACCAA+TGG | + | tig0001210:58609-58628 | None:intergenic | 30.0% |
| ! | TCCTTGTATTTTGCAACTAA+GGG | - | tig0001210:58696-58715 | Msa1336460:CDS | 30.0% |
| ! | TATTGTACTGATGCTATTCA+CGG | - | tig0001210:58842-58861 | Msa1336460:intron | 30.0% |
| !!! | CATCTTTCCAATTTTAGCTA+TGG | - | tig0001210:58973-58992 | Msa1336460:intron | 30.0% |
| !! | GCATGTTTGTATTGACTTAT+AGG | - | tig0001210:59002-59021 | Msa1336460:CDS | 30.0% |
| ACTTGCATATGTGAATGAAT+AGG | - | tig0001210:59326-59345 | Msa1336460:intron | 30.0% | |
| AAACATAAGAAGTCATGTCT+TGG | + | tig0001210:59413-59432 | None:intergenic | 30.0% | |
| ATTCGACAAAAATGTATGCA+TGG | + | tig0001210:59557-59576 | None:intergenic | 30.0% | |
| ! | TACAGAAAAAGGTGTAAATG+AGG | - | tig0001210:59652-59671 | Msa1336460:intron | 30.0% |
| ! | ACAGAAAAAGGTGTAAATGA+GGG | - | tig0001210:59653-59672 | Msa1336460:intron | 30.0% |
| TGTTCTATACAATCCACATA+CGG | + | tig0001210:59725-59744 | None:intergenic | 30.0% | |
| ! | TTCTGGAAATTGATCGTTTA+TGG | - | tig0001210:59868-59887 | Msa1336460:intron | 30.0% |
| AAATCTAAGAGAACTAGATC+AGG | - | tig0001210:59990-60009 | Msa1336460:intron | 30.0% | |
| ! | TAAGGTCAATTTTACACTGT+AGG | - | tig0001210:60141-60160 | Msa1336460:intron | 30.0% |
| ! | AAGGTCAATTTTACACTGTA+GGG | - | tig0001210:60142-60161 | Msa1336460:intron | 30.0% |
| GATGAATTATGTCAACCTTA+TGG | - | tig0001210:60193-60212 | Msa1336460:CDS | 30.0% | |
| TAACGATAATCTGAACCATA+AGG | + | tig0001210:60211-60230 | None:intergenic | 30.0% | |
| ATATCTACTTCCATTAATGC+TGG | - | tig0001210:60235-60254 | Msa1336460:CDS | 30.0% | |
| ATATATTCGTGAACATATGC+AGG | - | tig0001210:60328-60347 | Msa1336460:intron | 30.0% | |
| CATCTAGTACTCACTTTAAA+TGG | - | tig0001210:60635-60654 | Msa1336460:intron | 30.0% | |
| ACTCTCAACTATAGCTATTA+CGG | - | tig0001210:60811-60830 | Msa1336460:intron | 30.0% | |
| TATTCTACTCGAAACTGAAA+TGG | - | tig0001210:60851-60870 | Msa1336460:CDS | 30.0% | |
| AGTTCATTAACACAAGTCAA+AGG | - | tig0001210:60899-60918 | Msa1336460:CDS | 30.0% | |
| GTTCATTAACACAAGTCAAA+GGG | - | tig0001210:60900-60919 | Msa1336460:CDS | 30.0% | |
| AATTGATCCATGAGAAACTT+GGG | - | tig0001210:61003-61022 | Msa1336460:CDS | 30.0% | |
| ! | ATTATTTAGCTCAAGCTTGT+CGG | - | tig0001210:61158-61177 | Msa1336460:intron | 30.0% |
| !! | GATTTTAAGCATTTTGGGAA+TGG | + | tig0001210:61227-61246 | None:intergenic | 30.0% |
| !! | TACATTGATAGCGTTTGTAT+AGG | + | tig0001210:61335-61354 | None:intergenic | 30.0% |
| !!! | TCCTTGGTTTTGTTGAAAAA+CGG | - | tig0001210:61527-61546 | Msa1336460:intron | 30.0% |
| AATGGAATGAAAGGTTTACT+AGG | + | tig0001210:61560-61579 | None:intergenic | 30.0% | |
| TTTACTAAGTATGGATCTAG+TGG | - | tig0001210:61656-61675 | Msa1336460:intron | 30.0% | |
| AATTTCAGGCACAACTATAT+TGG | - | tig0001210:61917-61936 | Msa1336460:CDS | 30.0% | |
| TCATTACGTTCTATGAATTC+TGG | + | tig0001210:62002-62021 | None:intergenic | 30.0% | |
| GAACTTGTAATCCCATTTAA+TGG | - | tig0001210:62086-62105 | Msa1336460:CDS | 30.0% | |
| GATATTAGAATCACAAGTGT+TGG | + | tig0001210:62146-62165 | None:intergenic | 30.0% | |
| ACACTTGTGATTCTAATATC+TGG | - | tig0001210:62146-62165 | Msa1336460:CDS | 30.0% | |
| TTGATGTCCAAATGGTGAAA+AGG | + | tig0001210:58377-58396 | None:intergenic | 35.0% | |
| CAAGAACTAAGTCAGTTACA+TGG | - | tig0001210:58442-58461 | Msa1336460:CDS | 35.0% | |
| TTCAGCAGGATTCATATACA+CGG | + | tig0001210:58471-58490 | None:intergenic | 35.0% | |
| GTATATGAATCCTGCTGAAA+CGG | - | tig0001210:58472-58491 | Msa1336460:CDS | 35.0% | |
| GTGAAATCTTTAATGGCAGA+AGG | + | tig0001210:58587-58606 | None:intergenic | 35.0% | |
| GCCATTAAAGATTTCACCAT+TGG | - | tig0001210:58590-58609 | Msa1336460:CDS | 35.0% | |
| ! | CTCCTTGTATTTTGCAACTA+AGG | - | tig0001210:58695-58714 | Msa1336460:CDS | 35.0% |
| TCCCTTAGTTGCAAAATACA+AGG | + | tig0001210:58700-58719 | None:intergenic | 35.0% | |
| TTCTTAGCAGTTGCACTATT+TGG | + | tig0001210:58740-58759 | None:intergenic | 35.0% | |
| AAATAGTGCAACTGCTAAGA+AGG | - | tig0001210:58739-58758 | Msa1336460:intron | 35.0% | |
| ACTATATTTCCTCACAACGT+TGG | - | tig0001210:58887-58906 | Msa1336460:intron | 35.0% | |
| CCTTTGTCCATAGCTAAAAT+TGG | + | tig0001210:58983-59002 | None:intergenic | 35.0% | |
| !!! | CCAATTTTAGCTATGGACAA+AGG | - | tig0001210:58980-58999 | Msa1336460:intron | 35.0% |
| AAAATGCATAATCACCTGTG+AGG | - | tig0001210:59048-59067 | Msa1336460:CDS | 35.0% | |
| AAATGCATAATCACCTGTGA+GGG | - | tig0001210:59049-59068 | Msa1336460:CDS | 35.0% | |
| AGTCATGTCTTGGACAATTT+CGG | + | tig0001210:59403-59422 | None:intergenic | 35.0% | |
| GACATGACTTCTTATGTTTC+AGG | - | tig0001210:59414-59433 | Msa1336460:intron | 35.0% | |
| !! | TCTTATGTTTCAGGTTTGCA+AGG | - | tig0001210:59423-59442 | Msa1336460:intron | 35.0% |
| ! | CAGAAAAAGGTGTAAATGAG+GGG | - | tig0001210:59654-59673 | Msa1336460:intron | 35.0% |
| TTCTATACAATCCACATACG+GGG | + | tig0001210:59723-59742 | None:intergenic | 35.0% | |
| GTTCTATACAATCCACATAC+GGG | + | tig0001210:59724-59743 | None:intergenic | 35.0% | |
| ! | ACAAGCTGTTTCAACCATTA+TGG | - | tig0001210:59742-59761 | Msa1336460:intron | 35.0% |
| TAATCAGAAATCGATGACCA+TGG | + | tig0001210:59799-59818 | None:intergenic | 35.0% | |
| GGAAATTGATCGTTTATGGA+TGG | - | tig0001210:59872-59891 | Msa1336460:intron | 35.0% | |
| CATGTCAATTCCAGCATTAA+TGG | + | tig0001210:60248-60267 | None:intergenic | 35.0% | |
| CATTAATGCTGGAATTGACA+TGG | - | tig0001210:60246-60265 | Msa1336460:CDS | 35.0% | |
| ! | GTTGACATCTCTAGTTCAAT+CGG | - | tig0001210:60388-60407 | Msa1336460:intron | 35.0% |
| ! | TTGACATCTCTAGTTCAATC+GGG | - | tig0001210:60389-60408 | Msa1336460:intron | 35.0% |
| AGCAAAGATCTGTCAGTTAA+AGG | + | tig0001210:60494-60513 | None:intergenic | 35.0% | |
| TTTAACTGACAGATCTTTGC+TGG | - | tig0001210:60493-60512 | Msa1336460:CDS | 35.0% | |
| ! | TCTTCGGTGGTAATTTTTCA+AGG | + | tig0001210:60710-60729 | None:intergenic | 35.0% |
| ATTACCACCGAAGAGATTAT+CGG | - | tig0001210:60716-60735 | Msa1336460:intron | 35.0% | |
| ACTAAACCCGATAATCTCTT+CGG | + | tig0001210:60726-60745 | None:intergenic | 35.0% | |
| GTAACAGTGAACTAACGAAT+TGG | + | tig0001210:60754-60773 | None:intergenic | 35.0% | |
| AAAGGGAGAAAGGAAGAAAA+AGG | - | tig0001210:60917-60936 | Msa1336460:CDS | 35.0% | |
| CAATTGATCCATGAGAAACT+TGG | - | tig0001210:61002-61021 | Msa1336460:CDS | 35.0% | |
| !!! | AGTGCTGATTTTGTGATGAT+CGG | + | tig0001210:61283-61302 | None:intergenic | 35.0% |
| TCACAAAATCAGCACTCTAA+AGG | - | tig0001210:61287-61306 | Msa1336460:CDS | 35.0% | |
| ! | AAAATCAGCACTCTAAAGGA+TGG | - | tig0001210:61291-61310 | Msa1336460:CDS | 35.0% |
| !! | ATTGATAGCGTTTGTATAGG+AGG | + | tig0001210:61332-61351 | None:intergenic | 35.0% |
| TGTATGTGATCTATCCAATG+TGG | - | tig0001210:61351-61370 | Msa1336460:intron | 35.0% | |
| GTATGTGATCTATCCAATGT+GGG | - | tig0001210:61352-61371 | Msa1336460:intron | 35.0% | |
| !! | TCCGTTTTTCAACAAAACCA+AGG | + | tig0001210:61531-61550 | None:intergenic | 35.0% |
| !!! | GGTTTTGTTGAAAAACGGAA+AGG | - | tig0001210:61532-61551 | Msa1336460:intron | 35.0% |
| GGATGGACATTTACTAAGTA+TGG | - | tig0001210:61647-61666 | Msa1336460:intron | 35.0% | |
| AACTATATTGGATGCTGCTA+AGG | - | tig0001210:61929-61948 | Msa1336460:CDS | 35.0% | |
| GTTCTATGAATTCTGGTGTT+GGG | + | tig0001210:61995-62014 | None:intergenic | 35.0% | |
| ! | TCTTTTGCCATTGTTGCTAT+TGG | - | tig0001210:62026-62045 | Msa1336460:intron | 35.0% |
| CAATTCCAGCTCCATTAAAT+GGG | + | tig0001210:62100-62119 | None:intergenic | 35.0% | |
| ACAATTCCAGCTCCATTAAA+TGG | + | tig0001210:62101-62120 | None:intergenic | 35.0% | |
| TCTAATATCTGGAAGACCTT+TGG | - | tig0001210:62157-62176 | Msa1336460:CDS | 35.0% | |
| AAACTTTGTTCCAAGACCAA+AGG | + | tig0001210:62176-62195 | None:intergenic | 35.0% | |
| AAAAGTAGAAGCTCTTGTTG+CGG | - | tig0001210:62202-62221 | Msa1336460:CDS | 35.0% | |
| GGAATCACAGATGTTATCTT+CGG | - | tig0001210:62251-62270 | Msa1336460:five_prime_UTR | 35.0% | |
| GAATCACAGATGTTATCTTC+GGG | - | tig0001210:62252-62271 | Msa1336460:five_prime_UTR | 35.0% | |
| AATCACAGATGTTATCTTCG+GGG | - | tig0001210:62253-62272 | Msa1336460:five_prime_UTR | 35.0% | |
| ACTCTTCTAAACCAAGTCAT+TGG | + | tig0001210:62302-62321 | None:intergenic | 35.0% | |
| TATAATATAAGTGCGTGCCC+TGG | - | tig0001210:58325-58344 | Msa1336460:CDS | 40.0% | |
| TTAGCAGTTGCACTATTTGG+TGG | + | tig0001210:58737-58756 | None:intergenic | 40.0% | |
| !! | AGAAGGAAGTGTCATCTGAT+TGG | - | tig0001210:58756-58775 | Msa1336460:intron | 40.0% |
| !! | GAAGGAAGTGTCATCTGATT+GGG | - | tig0001210:58757-58776 | Msa1336460:intron | 40.0% |
| CACGGTAACAATAACGTCTA+TGG | - | tig0001210:58860-58879 | Msa1336460:intron | 40.0% | |
| AATGCATAATCACCTGTGAG+GGG | - | tig0001210:59050-59069 | Msa1336460:CDS | 40.0% | |
| TCACTTGAACTTAGAGCAAG+TGG | - | tig0001210:59175-59194 | Msa1336460:intron | 40.0% | |
| TAGCTCCTAGTGTATCTGTA+AGG | - | tig0001210:59212-59231 | Msa1336460:intron | 40.0% | |
| AGATGCCTTACAGATACACT+AGG | + | tig0001210:59220-59239 | None:intergenic | 40.0% | |
| !! | TTGGATGATTTTCTGGAGGT+TGG | + | tig0001210:59449-59468 | None:intergenic | 40.0% |
| AACCTCCAGAAAATCATCCA+AGG | - | tig0001210:59448-59467 | Msa1336460:intron | 40.0% | |
| ACCTCCAGAAAATCATCCAA+GGG | - | tig0001210:59449-59468 | Msa1336460:intron | 40.0% | |
| TCCAACAAAATGTCTAGCAC+AGG | + | tig0001210:59624-59643 | None:intergenic | 40.0% | |
| ! | GCTAGACATTTTGTTGGAGA+TGG | - | tig0001210:59626-59645 | Msa1336460:intron | 40.0% |
| ! | AGACATTTTGTTGGAGATGG+AGG | - | tig0001210:59629-59648 | Msa1336460:intron | 40.0% |
| GCTGGAATATGAGACCATAA+TGG | + | tig0001210:59759-59778 | None:intergenic | 40.0% | |
| TTATGGTCTCATATTCCAGC+TGG | - | tig0001210:59759-59778 | Msa1336460:intron | 40.0% | |
| GAAAGAAAAGCTAGGCTTCA+AGG | - | tig0001210:59829-59848 | Msa1336460:intron | 40.0% | |
| !! | AGGGTTTTGTGATTTCTGAC+TGG | - | tig0001210:60161-60180 | Msa1336460:CDS | 40.0% |
| !! | GGGTTTTGTGATTTCTGACT+GGG | - | tig0001210:60162-60181 | Msa1336460:CDS | 40.0% |
| ! | TTTTGTGATTTCTGACTGGG+AGG | - | tig0001210:60165-60184 | Msa1336460:CDS | 40.0% |
| TTTGTGATTTCTGACTGGGA+GGG | - | tig0001210:60166-60185 | Msa1336460:CDS | 40.0% | |
| ! | TGACATCTCTAGTTCAATCG+GGG | - | tig0001210:60390-60409 | Msa1336460:intron | 40.0% |
| CACTCTTAAAATCCGCTCAA+CGG | + | tig0001210:60444-60463 | None:intergenic | 40.0% | |
| AGATCTTTGCTGGATACTGT+TGG | - | tig0001210:60503-60522 | Msa1336460:intron | 40.0% | |
| CAAGGTAAGTGAAGTTTAGC+TGG | - | tig0001210:60529-60548 | Msa1336460:intron | 40.0% | |
| TTACCACCGAAGAGATTATC+GGG | - | tig0001210:60717-60736 | Msa1336460:intron | 40.0% | |
| AACACAAGTCAAAGGGAGAA+AGG | - | tig0001210:60907-60926 | Msa1336460:CDS | 40.0% | |
| ACTTGGGAACAAGGATAACA+CGG | - | tig0001210:61019-61038 | Msa1336460:CDS | 40.0% | |
| TTAAAACTTGGGGAGCAAGT+TGG | - | tig0001210:61069-61088 | Msa1336460:intron | 40.0% | |
| ! | CTGATTTTGTGATGATCGGA+TGG | + | tig0001210:61279-61298 | None:intergenic | 40.0% |
| CTCTTGGCGTTCTTATTCAA+TGG | + | tig0001210:61578-61597 | None:intergenic | 40.0% | |
| GGAACTCATGCTGATGATAT+CGG | - | tig0001210:61611-61630 | Msa1336460:intron | 40.0% | |
| GAACTCATGCTGATGATATC+GGG | - | tig0001210:61612-61631 | Msa1336460:intron | 40.0% | |
| GATGATATCGGGTATCAATG+TGG | - | tig0001210:61623-61642 | Msa1336460:intron | 40.0% | |
| AAGGCTAACCAATTGTGATC+TGG | + | tig0001210:61682-61701 | None:intergenic | 40.0% | |
| CGTTCTATGAATTCTGGTGT+TGG | + | tig0001210:61996-62015 | None:intergenic | 40.0% | |
| GTAATCCCATTTAATGGAGC+TGG | - | tig0001210:62092-62111 | Msa1336460:CDS | 40.0% | |
| ATTCCATTTCCTTCACTACC+AGG | + | tig0001210:62236-62255 | None:intergenic | 40.0% | |
| AGGGTAAACTACCAATGACT+TGG | - | tig0001210:62288-62307 | Msa1336460:five_prime_UTR | 40.0% | |
| CATGAATTCACTCCTTCAAC+AGG | + | tig0001210:62341-62360 | None:intergenic | 40.0% | |
| CATAACCAAGAGGGAATAAG+GGG | + | tig0001210:62370-62389 | None:intergenic | 40.0% | |
| CCATAACCAAGAGGGAATAA+GGG | + | tig0001210:62371-62390 | None:intergenic | 40.0% | |
| CCTTATTCCCTCTTGGTTAT+GGG | - | tig0001210:62369-62388 | Msa1336460:five_prime_UTR | 40.0% | |
| ! | GGTGGTTCCTTTTCACCATT+TGG | - | tig0001210:58367-58386 | Msa1336460:CDS | 45.0% |
| !! | CTGCAGAGTTGATGTCCAAA+TGG | + | tig0001210:58385-58404 | None:intergenic | 45.0% |
| GTCATCTGATTGGGCTGATA+TGG | - | tig0001210:58766-58785 | Msa1336460:intron | 45.0% | |
| GATTGGGCTGATATGGTTGA+CGG | - | tig0001210:58773-58792 | Msa1336460:intron | 45.0% | |
| AGGTCTGCAAAGATCCTAGA+TGG | - | tig0001210:59346-59365 | Msa1336460:intron | 45.0% | |
| GGTCTGCAAAGATCCTAGAT+GGG | - | tig0001210:59347-59366 | Msa1336460:intron | 45.0% | |
| GTCTGCAAAGATCCTAGATG+GGG | - | tig0001210:59348-59367 | Msa1336460:intron | 45.0% | |
| TCATAGCATCTTCCCCATCT+AGG | + | tig0001210:59363-59382 | None:intergenic | 45.0% | |
| CCTCCAGAAAATCATCCAAG+GGG | - | tig0001210:59450-59469 | Msa1336460:intron | 45.0% | |
| ! | TAGCCCCTTGGATGATTTTC+TGG | + | tig0001210:59456-59475 | None:intergenic | 45.0% |
| ! | GCCTGTGCTAGACATTTTGT+TGG | - | tig0001210:59620-59639 | Msa1336460:intron | 45.0% |
| ! | GGAGATGGAGGTACAGAAAA+AGG | - | tig0001210:59641-59660 | Msa1336460:intron | 45.0% |
| AGACTTAGAGCAGATCCACA+TGG | - | tig0001210:59697-59716 | Msa1336460:intron | 45.0% | |
| GTCTCATATTCCAGCTGGAA+TGG | - | tig0001210:59764-59783 | Msa1336460:intron | 45.0% | |
| TGGAATGGAGTCAAACTCCA+TGG | - | tig0001210:59779-59798 | Msa1336460:intron | 45.0% | |
| TCGTGAACATATGCAGGTGA+TGG | - | tig0001210:60334-60353 | Msa1336460:intron | 45.0% | |
| ! | GACATCTCTAGTTCAATCGG+GGG | - | tig0001210:60391-60410 | Msa1336460:intron | 45.0% |
| GCATCATCAATCCTGGCTAT+TGG | + | tig0001210:60422-60441 | None:intergenic | 45.0% | |
| AAACCCGATAATCTCTTCGG+TGG | + | tig0001210:60723-60742 | None:intergenic | 45.0% | |
| CCTTGTTCCCAAGTTTCTCA+TGG | + | tig0001210:61013-61032 | None:intergenic | 45.0% | |
| CCATGAGAAACTTGGGAACA+AGG | - | tig0001210:61010-61029 | Msa1336460:CDS | 45.0% | |
| ATAGGAGGAGAGGAGTCTTA+AGG | + | tig0001210:61317-61336 | None:intergenic | 45.0% | |
| TAGCGTTTGTATAGGAGGAG+AGG | + | tig0001210:61327-61346 | None:intergenic | 45.0% | |
| TGAAGCAGTTCGAAAGTCCT+TGG | - | tig0001210:61511-61530 | Msa1336460:CDS | 45.0% | |
| TCCAGCAACAAGGATTCTCT+TGG | + | tig0001210:61594-61613 | None:intergenic | 45.0% | |
| GATATCGGGTATCAATGTGG+AGG | - | tig0001210:61626-61645 | Msa1336460:intron | 45.0% | |
| TCTAGTGGCCAGATCACAAT+TGG | - | tig0001210:61671-61690 | Msa1336460:intron | 45.0% | |
| GGCTTCACCAATAGCAACAA+TGG | + | tig0001210:62036-62055 | None:intergenic | 45.0% | |
| ATCTGGAAGACCTTTGGTCT+TGG | - | tig0001210:62163-62182 | Msa1336460:CDS | 45.0% | |
| ! | TTGCCTGGTAGTGAAGGAAA+TGG | - | tig0001210:62230-62249 | Msa1336460:five_prime_UTR | 45.0% |
| TTCGGGGATCATGACTTCAA+GGG | - | tig0001210:62269-62288 | Msa1336460:five_prime_UTR | 45.0% | |
| CAGCTTGATCAACCTGTTGA+AGG | - | tig0001210:62326-62345 | Msa1336460:five_prime_UTR | 45.0% | |
| CCCTTATTCCCTCTTGGTTA+TGG | - | tig0001210:62368-62387 | Msa1336460:five_prime_UTR | 45.0% | |
| CCCATAACCAAGAGGGAATA+AGG | + | tig0001210:62372-62391 | None:intergenic | 45.0% | |
| AAGCTAGCCCATAACCAAGA+GGG | + | tig0001210:62379-62398 | None:intergenic | 45.0% | |
| TAAGCTAGCCCATAACCAAG+AGG | + | tig0001210:62380-62399 | None:intergenic | 45.0% | |
| ! | GGTTGACGGTTTTCAGAAGC+TGG | - | tig0001210:58787-58806 | Msa1336460:intron | 50.0% |
| AGAAGCTGGCGCTTGAATCA+CGG | - | tig0001210:58801-58820 | Msa1336460:intron | 50.0% | |
| ! | TTTCCTCACAACGTTGGCCT+CGG | - | tig0001210:58893-58912 | Msa1336460:intron | 50.0% |
| ACACAAACCTAGTTGCTCCG+AGG | + | tig0001210:58913-58932 | None:intergenic | 50.0% | |
| AAATGCACATGACCCCTCAC+AGG | + | tig0001210:59065-59084 | None:intergenic | 50.0% | |
| ! | CCCCTTGGATGATTTTCTGG+AGG | + | tig0001210:59453-59472 | None:intergenic | 50.0% |
| GAGTTTGACTCCATTCCAGC+TGG | + | tig0001210:59777-59796 | None:intergenic | 50.0% | |
| CTCAACGGCATCATCAATCC+TGG | + | tig0001210:60429-60448 | None:intergenic | 50.0% | |
| !! | GGATTGATGATGCCGTTGAG+CGG | - | tig0001210:60429-60448 | Msa1336460:CDS | 50.0% |
| ! | GCTGGATACTGTTGGTTGCA+AGG | - | tig0001210:60511-60530 | Msa1336460:intron | 50.0% |
| GCCAAGAGAATCCTTGTTGC+TGG | - | tig0001210:61590-61609 | Msa1336460:intron | 50.0% | |
| CAGCATGAGTTCCAGCAACA+AGG | + | tig0001210:61604-61623 | None:intergenic | 50.0% | |
| TCGGGTATCAATGTGGAGGA+TGG | - | tig0001210:61630-61649 | Msa1336460:intron | 50.0% | |
| GATGCTGCTAAGGATGCTGT+GGG | - | tig0001210:61939-61958 | Msa1336460:CDS | 50.0% | |
| TCACCTCCACACTCAGCATA+GGG | + | tig0001210:62059-62078 | None:intergenic | 50.0% | |
| TAGAAGCTCTTGTTGCGGCA+TGG | - | tig0001210:62207-62226 | Msa1336460:exon | 50.0% | |
| CTTCGGGGATCATGACTTCA+AGG | - | tig0001210:62268-62287 | Msa1336460:five_prime_UTR | 50.0% | |
| GATGACCCCTTATTCCCTCT+TGG | - | tig0001210:62362-62381 | Msa1336460:five_prime_UTR | 50.0% | |
| CGAGCTTCAACCGTTTCAGC+AGG | + | tig0001210:58485-58504 | None:intergenic | 55.0% | |
| CTGGCGCTTGAATCACGGTT+AGG | - | tig0001210:58806-58825 | Msa1336460:intron | 55.0% | |
| TCCAAGGGGCTACCCATTTG+TGG | - | tig0001210:59464-59483 | Msa1336460:intron | 55.0% | |
| CCTACCTCCCAGCCACAAAT+GGG | + | tig0001210:59479-59498 | None:intergenic | 55.0% | |
| AATCCACATACGGGGCCATG+TGG | + | tig0001210:59715-59734 | None:intergenic | 55.0% | |
| GGATGCTGCTAAGGATGCTG+TGG | - | tig0001210:61938-61957 | Msa1336460:CDS | 55.0% | |
| TGCTAAGGATGCTGTGGGAC+AGG | - | tig0001210:61944-61963 | Msa1336460:CDS | 55.0% | |
| ACCTCCACACTCAGCATAGG+GGG | + | tig0001210:62057-62076 | None:intergenic | 55.0% | |
| CACCTCCACACTCAGCATAG+GGG | + | tig0001210:62058-62077 | None:intergenic | 55.0% | |
| GTCACCTCCACACTCAGCAT+AGG | + | tig0001210:62060-62079 | None:intergenic | 55.0% | |
| ! | GCATGGTTGCCTGGTAGTGA+AGG | - | tig0001210:62224-62243 | Msa1336460:five_prime_UTR | 55.0% |
| ! | ACGTTGGCCTCGGAGCAACT+AGG | - | tig0001210:58903-58922 | Msa1336460:intron | 60.0% |
| GCCACAAATGGGTAGCCCCT+TGG | + | tig0001210:59468-59487 | None:intergenic | 60.0% | |
| AGGGGCTACCCATTTGTGGC+TGG | - | tig0001210:59468-59487 | Msa1336460:intron | 60.0% | |
| GGGGCTACCCATTTGTGGCT+GGG | - | tig0001210:59469-59488 | Msa1336460:intron | 60.0% | |
| GCTACCCATTTGTGGCTGGG+AGG | - | tig0001210:59472-59491 | Msa1336460:intron | 60.0% | |
| CCCATTTGTGGCTGGGAGGT+AGG | - | tig0001210:59476-59495 | Msa1336460:intron | 60.0% | |
| GCCTACCTCCCAGCCACAAA+TGG | + | tig0001210:59480-59499 | None:intergenic | 60.0% | |
| TGGCTGGGAGGTAGGCAGAT+AGG | - | tig0001210:59484-59503 | Msa1336460:intron | 60.0% | |
| GATCCACATGGCCCCGTATG+TGG | - | tig0001210:59709-59728 | Msa1336460:intron | 60.0% | |
| !! | CGGGGGAAGTACCAATAGCC+AGG | - | tig0001210:60408-60427 | Msa1336460:intron | 60.0% |
| GAAGCCCCCTATGCTGAGTG+TGG | - | tig0001210:62050-62069 | Msa1336460:intron | 60.0% | |
| CTTGTTGCGGCATGGTTGCC+TGG | - | tig0001210:62215-62234 | Msa1336460:exon | 60.0% | |
| GCTCCGAGGCCAACGTTGTG+AGG | + | tig0001210:58899-58918 | None:intergenic | 65.0% | |
| GCCCCCTATGCTGAGTGTGG+AGG | - | tig0001210:62053-62072 | Msa1336460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001210 | gene | 58258 | 62424 | 58258 | ID=Msa1336460;Name=Msa1336460 |
| tig0001210 | mRNA | 58258 | 62424 | 58258 | ID=Msa1336460-mRNA-1;Parent=Msa1336460;Name=Msa1336460-mRNA-1;_AED=0.26;_eAED=0.26;_QI=203|0.75|0.44|1|1|1|9|0|609 |
| tig0001210 | exon | 58258 | 58757 | 58258 | ID=Msa1336460-mRNA-1:exon:734;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 58990 | 59191 | 58990 | ID=Msa1336460-mRNA-1:exon:733;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 60150 | 60332 | 60150 | ID=Msa1336460-mRNA-1:exon:732;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 60415 | 60519 | 60415 | ID=Msa1336460-mRNA-1:exon:731;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 60832 | 61075 | 60832 | ID=Msa1336460-mRNA-1:exon:730;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 61189 | 61334 | 61189 | ID=Msa1336460-mRNA-1:exon:729;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 61454 | 61544 | 61454 | ID=Msa1336460-mRNA-1:exon:728;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 61758 | 61965 | 61758 | ID=Msa1336460-mRNA-1:exon:727;Parent=Msa1336460-mRNA-1 |
| tig0001210 | exon | 62071 | 62424 | 62071 | ID=Msa1336460-mRNA-1:exon:726;Parent=Msa1336460-mRNA-1 |
| tig0001210 | five_prime_UTR | 62222 | 62424 | 62222 | ID=Msa1336460-mRNA-1:five_prime_utr;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 62071 | 62221 | 62071 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 61758 | 61965 | 61758 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 61454 | 61544 | 61454 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 61189 | 61334 | 61189 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 60832 | 61075 | 60832 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 60415 | 60519 | 60415 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 60150 | 60332 | 60150 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 58990 | 59191 | 58990 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| tig0001210 | CDS | 58258 | 58757 | 58258 | ID=Msa1336460-mRNA-1:cds;Parent=Msa1336460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
