AlfalfaGEDB | Msa1337510

M. sativa cultivar zhongmu-4 / Msa1337510

KEGG: -
GO: -
PFAM: PF00370.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337510	XP_003610159.1	91.034	580	34	3	1	566	1	576	0.0	1036

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337510	sp\|Q96C11\|FGGY_HUMAN	45.961	557	272	8	14	561	12	548	4.24e-164	481

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337510	G7JD18	91.034	580	34	3	1	566	1	576	0.0	1036

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0380650	Msa1337510	0.814100	1.829282e-51	-8.615850e-47
Msa0430290	Msa1337510	0.816883	4.396300e-52	-8.615850e-47
Msa0615600	Msa1337510	0.803225	3.858754e-49	-8.615850e-47
Msa1265260	Msa1337510	0.893418	6.400981e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337510	MtrunA17_Chr4g0072731	91.034	580	34	3	1	566	1	576	0.0	1036

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1337510	AT4G30310.2	73.822	573	136	4	7	566	8	579	877
Msa1337510	AT4G30310.1	71.575	489	119	4	6	483	7	486	726
Msa1337510	AT4G30310.4	73.377	462	109	4	118	566	1	461	707
Msa1337510	AT4G30310.3	72.826	460	105	4	118	566	1	451	699

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Find 179 sgRNAs with CRISPR-Local

Find 556 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATATAATAGCCTTA+GGG	0.515674	tig0001526:+164239	Msa1337510:CDS
AAAGAACCCTATCTACATTC+AGG	0.526921	tig0001526:+162996	Msa1337510:CDS
AAATCAAAAGGAGTTATCTA+TGG	0.364935	tig0001526:+162516	Msa1337510:CDS
AACACATTACTTGCATGTGG+AGG	0.667479	tig0001526:+162967	Msa1337510:CDS
AACATGTAAATCTTCAGTCA+GGG	0.637963	tig0001526:-162370	None:intergenic
AACCGAAACAGGTGAGCTGT+CGG	0.593045	tig0001526:-158790	None:intergenic
AACCGTATGGTGTTAGTTTG+TGG	0.476840	tig0001526:+161224	Msa1337510:CDS
AACTTTCAACTGCAATTAGA+TGG	0.437644	tig0001526:+165138	Msa1337510:three_prime_UTR
AAGAAAATTTGCAAGAATCT+TGG	0.330498	tig0001526:+159525	Msa1337510:CDS
AAGAAATGTGATAGTATGGA+TGG	0.531924	tig0001526:+158833	Msa1337510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGATGCTACCTATTGAAAT+CGG	+	tig0001526:158096-158115	Msa1337510:five_prime_UTR	30.0%
AAATGAATTGGAAGAAGGAA+TGG	-	tig0001526:158278-158297	None:intergenic	30.0%
GTTGAAAATGAATTGGAAGA+AGG	-	tig0001526:158283-158302	None:intergenic	30.0%
TATTATTACGGCAATGAAAG+TGG	-	tig0001526:158514-158533	None:intergenic	30.0%
AGCAATCTTCTACAGATATA+TGG	+	tig0001526:158564-158583	Msa1337510:intron	30.0%
CAAGAAGAAATGTGATAGTA+TGG	+	tig0001526:158829-158848	Msa1337510:CDS	30.0%
AAGAAATGTGATAGTATGGA+TGG	+	tig0001526:158833-158852	Msa1337510:CDS	30.0%
TACAAGTAAATCACCTGTAT+TGG	+	tig0001526:158890-158909	Msa1337510:CDS	30.0%
CAAGGAATCATAATCTGTAT+TGG	+	tig0001526:159118-159137	Msa1337510:intron	30.0%
CTCCTTTATGGATTCAATTA+TGG	+	tig0001526:159451-159470	Msa1337510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0001526	gene	158054	165393	158054	ID=Msa1337510;Name=Msa1337510
tig0001526	mRNA	158054	165393	158054	ID=Msa1337510-mRNA-1;Parent=Msa1337510;Name=Msa1337510-mRNA-1;_AED=0.11;_eAED=0.11;_QI=140\|0.85\|0.86\|1\|1\|1\|15\|288\|566
tig0001526	exon	158054	158272	158054	ID=Msa1337510-mRNA-1:exon:1130;Parent=Msa1337510-mRNA-1
tig0001526	exon	158359	158438	158359	ID=Msa1337510-mRNA-1:exon:1131;Parent=Msa1337510-mRNA-1
tig0001526	exon	158566	158683	158566	ID=Msa1337510-mRNA-1:exon:1132;Parent=Msa1337510-mRNA-1
tig0001526	exon	158778	158956	158778	ID=Msa1337510-mRNA-1:exon:1133;Parent=Msa1337510-mRNA-1
tig0001526	exon	159512	159594	159512	ID=Msa1337510-mRNA-1:exon:1134;Parent=Msa1337510-mRNA-1
tig0001526	exon	159687	159803	159687	ID=Msa1337510-mRNA-1:exon:1135;Parent=Msa1337510-mRNA-1
tig0001526	exon	160741	160840	160741	ID=Msa1337510-mRNA-1:exon:1136;Parent=Msa1337510-mRNA-1
tig0001526	exon	161011	161113	161011	ID=Msa1337510-mRNA-1:exon:1137;Parent=Msa1337510-mRNA-1
tig0001526	exon	161201	161320	161201	ID=Msa1337510-mRNA-1:exon:1138;Parent=Msa1337510-mRNA-1
tig0001526	exon	162069	162188	162069	ID=Msa1337510-mRNA-1:exon:1139;Parent=Msa1337510-mRNA-1
tig0001526	exon	162295	162415	162295	ID=Msa1337510-mRNA-1:exon:1140;Parent=Msa1337510-mRNA-1
tig0001526	exon	162497	162653	162497	ID=Msa1337510-mRNA-1:exon:1141;Parent=Msa1337510-mRNA-1
tig0001526	exon	162964	163036	162964	ID=Msa1337510-mRNA-1:exon:1142;Parent=Msa1337510-mRNA-1
tig0001526	exon	164166	164293	164166	ID=Msa1337510-mRNA-1:exon:1143;Parent=Msa1337510-mRNA-1
tig0001526	exon	164983	165393	164983	ID=Msa1337510-mRNA-1:exon:1144;Parent=Msa1337510-mRNA-1
tig0001526	five_prime_UTR	158054	158193	158054	ID=Msa1337510-mRNA-1:five_prime_utr;Parent=Msa1337510-mRNA-1
tig0001526	CDS	158194	158272	158194	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	158359	158438	158359	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	158566	158683	158566	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	158778	158956	158778	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	159512	159594	159512	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	159687	159803	159687	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	160741	160840	160741	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	161011	161113	161011	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	161201	161320	161201	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	162069	162188	162069	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	162295	162415	162295	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	162497	162653	162497	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	162964	163036	162964	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	164166	164293	164166	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	CDS	164983	165105	164983	ID=Msa1337510-mRNA-1:cds;Parent=Msa1337510-mRNA-1
tig0001526	three_prime_UTR	165106	165393	165106	ID=Msa1337510-mRNA-1:three_prime_utr;Parent=Msa1337510-mRNA-1

Gene Sequence

>Msa1337510

ATGGCCTCACCCACCGAACCTTCTGCTTCTCGCTCCATCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGCGCTGGATTGTTTGATGAGGAAGGAAAGCTTCTCGGTTCGTCTAGCAGCCCGATACAGATATGGAAAGATGGTGCCTTTGTTGAGCAATCTTCTACAGATATATGGCTTGCAGTTTGTGTTGCTGTAAAAGCAGCTTGTTCTAAAGCAAAAGTTGCACCTACAGAAGTACAGAGTCTGGGATTCGCAGCTACTTGTTCACTCGTTGCGGTGGATTCCGACAGCTCACCTGTTTCGGTTTCTCGGAGTGGTGATTCAAGAAGAAATGTGATAGTATGGATGGATCATAGAGCTGTAGACCAAGCTGAAAGGATCAATACAAGTAAATCACCTGTATTGGAATACTGTGGTGGAGCTGTTTCACCAGAAATGCAACCACCAAAGCTTCTATGGGTTAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGATTTGAGTGACTGGTTGTCATACAGGGCTACTGGAGATGATACTCGCAGTCTTTGCACCACAGTTTGTAAATGGACATATCTTGGCCATGCTCACATGCAGTATGTCAATGATACAGATTCCCGAGATATGGAAGCTTGTGGGGCGAAGTGTCGCTTTCCCTGGCCATCCTTTGGGTTCTGGCCTTACTCCTACTGCAGCGAAGGCAAGAATTTTGTGATGAAGATTATGCATTATTTTGAAGAACTGGGTCTTGTGCCAGGAATTCCTGTTGGGACATCATTGATTGATGCTCATGCTGGTGGCGTGGGGGTAATTGAAAGTTTGCCCCCATCAGAAACTGAAGAGAATGACAAGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGTACTTCTACATGTCATATGGCTGTATCCCGGAGCAAATTGTTCATTCCTGGGATTTGGGGGCCGTTTTGGTCAGCAATGGTACCAGAATATTGGCTTACTGAAGGCGGGCAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAAACCATGCCGGTTCTATACACCTTGCAAATAGAGCTGCTTCCCAAAAGATCTCAGTGTTTGAGCTTCTGAACAAGCTCTTGGAAACAATAATGACTGAGCAGAACCAAACCTTTATAGGCGCCCTGACTGAAGATTTACATGTTCTTCCTGACTTTCATGGGAATAGGTCTCCCATTGCAGACCCAAAATCAAAAGGAGTTATCTATGGTTTGACACTTGACACAAGTGATCAACAATTGGCTCTTCTATACCTAGCAACTGTGCAGGGCATTGCATATGGAACGCGTCACATTGTAGAGCATTGTAATGCCCATGGTCACAAAATCAACACATTACTTGCATGTGGAGGCCTATCAAAGAACCCTATCTACATTCAGGAACATGCTGATATTATTGGCTGCCCTATAATTCTTCCAAGGGAAAGTGAATCTGTGCTCTTGGGTGCTGCTATTCTGGGTGCTGTCGCTACAAAGAAATATAATAGCCTTAGGGAGGCCATGAAAGCCCTGAATGCAGCTGGTCAGGTTATTCATCCATCTACTGATCCAAAAGTGAAAAAGTACCATGATGCCAAATACAAGATATTCCGTGGCCTTTATGAACAACAGCTCTCTAATCGTTCTGTGATGGCTCAGGCGTTGGCATAG

Protein sequence

>Msa1337510

MASPTEPSASRSIFLGVDVGTGSARAGLFDEEGKLLGSSSSPIQIWKDGAFVEQSSTDIWLAVCVAVKAACSKAKVAPTEVQSLGFAATCSLVAVDSDSSPVSVSRSGDSRRNVIVWMDHRAVDQAERINTSKSPVLEYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQYVNDTDSRDMEACGAKCRFPWPSFGFWPYSYCSEGKNFVMKIMHYFEELGLVPGIPVGTSLIDAHAGGVGVIESLPPSETEENDKEAICNRMVLVCGTSTCHMAVSRSKLFIPGIWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHAGSIHLANRAASQKISVFELLNKLLETIMTEQNQTFIGALTEDLHVLPDFHGNRSPIADPKSKGVIYGLTLDTSDQQLALLYLATVQGIAYGTRHIVEHCNAHGHKINTLLACGGLSKNPIYIQEHADIIGCPIILPRESESVLLGAAILGAVATKKYNSLREAMKALNAAGQVIHPSTDPKVKKYHDAKYKIFRGLYEQQLSNRSVMAQALA*