AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430290 MtrunA17_Chr3g0134241 97.030 202 6 0 1 202 1 202 6.93e-150 414
Msa0430290 MtrunA17_Chr3g0133961 48.361 122 62 1 81 201 101 222 2.96e-37 129
Msa0430290 MtrunA17_Chr8g0353071 42.609 115 66 0 85 199 1891 2005 3.22e-27 108
Msa0430290 MtrunA17_Chr5g0398111 41.379 87 48 2 91 177 1362 1445 9.59e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430290 AT3G46630.1 58.974 195 67 5 17 202 17 207 2.83e-70 213
Msa0430290 AT1G45230.1 47.059 119 63 0 81 199 96 214 3.46e-35 124
Msa0430290 AT1G45230.2 48.276 116 60 0 84 199 99 214 1.24e-34 122
Msa0430290 AT2G40030.1 44.348 115 64 0 85 199 1735 1849 4.33e-29 114

Find 68 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATGAAGAAATTGGTTAT+TGG 0.260723 3_2:+82008524 Msa0430290:three_prime_UTR
AAATGTTGCAAGAATGAAAA+AGG 0.269903 3_2:-82008626 None:intergenic
GACACCTTGAGTGTCGAAAT+TGG 0.273641 3_2:-82008150 None:intergenic
CCGATTTAACGTGTTGTTAA+CGG 0.274705 3_2:-82001874 None:intergenic
AAGAATCTGATTATCGAAAA+TGG 0.276535 3_2:+82001937 Msa0430290:CDS
GCTATAAGTGCTTACCATAA+TGG 0.279775 3_2:-82002223 None:intergenic
TTTGCTGGGGATGAAGAAAT+TGG 0.310677 3_2:+82008517 Msa0430290:three_prime_UTR
TTGCGGCGCGCCATCGTTCA+TGG 0.324166 3_2:+82001796 Msa0430290:CDS
TCCTTAGTAAGCACGATAAT+AGG 0.329251 3_2:-82001996 None:intergenic
CGGTGAAGTGTTTGTAGTTA+TGG 0.331589 3_2:-82001764 None:intergenic
ACACTTGAGGAACACTTTGC+TGG 0.339660 3_2:+82008502 Msa0430290:three_prime_UTR
TGGCCGCACCACTTCTTCTA+AGG 0.356825 3_2:+82001715 Msa0430290:CDS
GGATGAAGAAATTGGTTATT+GGG 0.365786 3_2:+82008525 Msa0430290:three_prime_UTR
CTTTACCACCTCTATATCAT+AGG 0.373536 3_2:+82008582 Msa0430290:three_prime_UTR
ACACCTTGAGTGTCGAAATT+GGG 0.379682 3_2:-82008149 None:intergenic
ATGTGGTCTTGAATCCATTA+TGG 0.401081 3_2:+82002209 Msa0430290:CDS
ACCTATTATCGTGCTTACTA+AGG 0.426424 3_2:+82001995 Msa0430290:CDS
CCCGTCGAGTAACTTCCGTT+TGG 0.427801 3_2:+82001908 Msa0430290:CDS
AACGTGTTGTTAACGGAGTT+AGG 0.441542 3_2:-82001867 None:intergenic
ACGGAGTTAGGTTTATCGTT+TGG 0.446191 3_2:-82001855 None:intergenic
CACTTGAGGAACACTTTGCT+GGG 0.447753 3_2:+82008503 Msa0430290:three_prime_UTR
ATGACTCTTGAGCAACATTC+TGG 0.451720 3_2:-82008731 None:intergenic
GAAAATGACCCGACATAGTA+AGG 0.456086 3_2:+82001609 Msa0430290:five_prime_UTR
GTCGAGTAACTTCCGTTTGG+AGG 0.460444 3_2:+82001911 Msa0430290:CDS
CCACACTCTGAAGATAAGAT+TGG 0.461224 3_2:+82002186 Msa0430290:CDS
GGATGGAGGGACATTAACTT+TGG 0.461982 3_2:+82002122 Msa0430290:CDS
CCGTTAACAACACGTTAAAT+CGG 0.462228 3_2:+82001874 Msa0430290:CDS
TGGTCTCTTCTCTTCAGCAT+CGG 0.470397 3_2:+82008661 Msa0430290:three_prime_UTR
AGTAGTTGATGTATGTATAG+TGG 0.470732 3_2:+82008298 Msa0430290:exon
TTGGTTATTGGGTGAGTGGT+AGG 0.479943 3_2:+82008536 Msa0430290:three_prime_UTR
GTGAATTTCCTATGATATAG+AGG 0.481745 3_2:-82008590 None:intergenic
TTGTAAGAACTGATGGTGGC+TGG 0.484149 3_2:+82008179 Msa0430290:CDS
TTCGAGAACATCTGAAGCGC+GGG 0.521920 3_2:+82008275 Msa0430290:CDS
GACACACTCCTTACTATGTC+GGG 0.526654 3_2:-82001617 None:intergenic
ATAAACCTTTCAGCATGAGC+TGG 0.527085 3_2:-82008253 None:intergenic
CAGATTCTTCATCCTCCAAA+CGG 0.535477 3_2:-82001923 None:intergenic
TGGAGGGACATTAACTTTGG+AGG 0.540847 3_2:+82002125 Msa0430290:CDS
CGGCGCTGCACCATGAACGA+TGG 0.551636 3_2:-82001806 None:intergenic
AGAGCTTGCCTTAGAAGAAG+TGG 0.555098 3_2:-82001723 None:intergenic
CACCTTGAGTGTCGAAATTG+GGG 0.557551 3_2:-82008148 None:intergenic
CGACGGTGGATTGATGGCGG+CGG 0.566544 3_2:-82001826 None:intergenic
TGAACGATGGCGCGCCGCAA+CGG 0.567387 3_2:-82001793 None:intergenic
TAAACCTTTCAGCATGAGCT+GGG 0.578041 3_2:-82008252 None:intergenic
AACTTCACTTCATACACTTG+AGG 0.581626 3_2:+82008489 Msa0430290:three_prime_UTR
TTTGTTGTAAGAACTGATGG+TGG 0.582232 3_2:+82008175 Msa0430290:CDS
CGCCGCCATCAATCCACCGT+CGG 0.583751 3_2:+82001827 Msa0430290:CDS
GCGCGCCGCAACGGTTCTGA+CGG 0.584424 3_2:-82001784 None:intergenic
GAAATTGGTTATTGGGTGAG+TGG 0.591689 3_2:+82008532 Msa0430290:three_prime_UTR
TTCCGACGGTGGATTGATGG+CGG 0.592348 3_2:-82001829 None:intergenic
CCAATCTTATCTTCAGAGTG+TGG 0.595640 3_2:-82002186 None:intergenic
ATCTGATTATCGAAAATGGA+AGG 0.596386 3_2:+82001941 Msa0430290:CDS
AGAATGTTGCTCAAGAGTCA+TGG 0.597466 3_2:+82008733 Msa0430290:three_prime_UTR
ATCCCCAATTTCGACACTCA+AGG 0.598228 3_2:+82008146 Msa0430290:CDS
CCAAACGGAAGTTACTCGAC+GGG 0.599011 3_2:-82001908 None:intergenic
TGACACACTCCTTACTATGT+CGG 0.599050 3_2:-82001618 None:intergenic
AGTGTCGAAATTGGGGATGA+CGG 0.599976 3_2:-82008141 None:intergenic
TCTGAAGATAAGATTGGATG+TGG 0.603550 3_2:+82002192 Msa0430290:CDS
AGTACCCAGCTCATGCTGAA+AGG 0.605237 3_2:+82008248 Msa0430290:CDS
GGAGGATGAGAAAGCTGTAG+TGG 0.608022 3_2:+82002143 Msa0430290:CDS
TTGTGTGCTAGGTATATGGA+TGG 0.625552 3_2:+82002105 Msa0430290:intron
ATTCGAGAACATCTGAAGCG+CGG 0.646041 3_2:+82008274 Msa0430290:CDS
TCCAAACGGAAGTTACTCGA+CGG 0.646116 3_2:-82001909 None:intergenic
ACTTGAGGAACACTTTGCTG+GGG 0.662604 3_2:+82008504 Msa0430290:three_prime_UTR
TGTGCTAGGTATATGGATGG+AGG 0.667189 3_2:+82002108 Msa0430290:intron
GTGCTAGGTATATGGATGGA+GGG 0.681449 3_2:+82002109 Msa0430290:intron
TTGCCTTAGAAGAAGTGGTG+CGG 0.691027 3_2:-82001718 None:intergenic
CTTCACCGTCAGAACCGTTG+CGG 0.698015 3_2:+82001779 Msa0430290:CDS
AATTTCCTATGATATAGAGG+TGG 0.707841 3_2:-82008587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAAACAAAAAGAAAA+AGG + chr3_2:82003153-82003172 Msa0430290:intron 10.0%
!!! TATATTAATATTCGTTTTTT+TGG + chr3_2:82003621-82003640 Msa0430290:intron 10.0%
!!! AATTTTATTACTATTTACAT+GGG + chr3_2:82006668-82006687 Msa0430290:intron 10.0%
!! AAAATATCTAAAAATTCATA+AGG - chr3_2:82007652-82007671 None:intergenic 10.0%
!!! TTTTAAGAAGAAAAAAATTT+GGG - chr3_2:82007976-82007995 None:intergenic 10.0%
!!! ATTTTAAGAAGAAAAAAATT+TGG - chr3_2:82007977-82007996 None:intergenic 10.0%
!! TAATAATTAAACACTAATTC+AGG - chr3_2:82002865-82002884 None:intergenic 15.0%
!! AGTTGTATTAATAAGATAAA+CGG + chr3_2:82003003-82003022 Msa0430290:intron 15.0%
!!! AAATACTAAAGTTTTGATTT+TGG - chr3_2:82003550-82003569 None:intergenic 15.0%
!!! AAATCAAAACTTTAGTATTT+TGG + chr3_2:82003550-82003569 Msa0430290:intron 15.0%
!! TATAAATATGACAATGATTA+CGG - chr3_2:82003807-82003826 None:intergenic 15.0%
!!! TGTTATTCTTTTTTAAACAA+GGG + chr3_2:82004741-82004760 Msa0430290:intron 15.0%
!!! ATGAATTTCTACTTTTAAAT+AGG + chr3_2:82005695-82005714 Msa0430290:intron 15.0%
!!! CAATTTTATTACTATTTACA+TGG + chr3_2:82006667-82006686 Msa0430290:intron 15.0%
!! AGAAAATTGTATCTTTAATT+AGG + chr3_2:82007337-82007356 Msa0430290:intron 15.0%
!! ATAACAATAATCAATTGATA+AGG - chr3_2:82007908-82007927 None:intergenic 15.0%
!! TTGATTAAACTATTATTGTT+TGG + chr3_2:82008073-82008092 Msa0430290:intron 15.0%
!!! TTTTTTGTTGCGTTAATTAA+TGG - chr3_2:82001672-82001691 None:intergenic 20.0%
!!! ATTGTTTTTGTATATGCTAT+AGG + chr3_2:82002691-82002710 Msa0430290:intron 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG + chr3_2:82002713-82002732 Msa0430290:intron 20.0%
!!! GAATTAGAATTTTGAACATT+AGG + chr3_2:82003097-82003116 Msa0430290:intron 20.0%
!!! TTGGTTGAAATTTTTTTATG+AGG - chr3_2:82003531-82003550 None:intergenic 20.0%
!! AACTACATGTTAAAAACAAT+AGG - chr3_2:82003581-82003600 None:intergenic 20.0%
!!! TAGTTACTTATTTTTAGTGT+AGG + chr3_2:82003596-82003615 Msa0430290:intron 20.0%
!!! AGTTACTTATTTTTAGTGTA+GGG + chr3_2:82003597-82003616 Msa0430290:intron 20.0%
!!! TTAATATTCGTTTTTTTGGT+TGG + chr3_2:82003625-82003644 Msa0430290:intron 20.0%
!!! TAATATTCGTTTTTTTGGTT+GGG + chr3_2:82003626-82003645 Msa0430290:intron 20.0%
!! ATAAATATGACAATGATTAC+GGG - chr3_2:82003806-82003825 None:intergenic 20.0%
!! ATGATATTTGTACAACTATT+TGG + chr3_2:82004056-82004075 Msa0430290:intron 20.0%
!!! AATGAGATTTTAAATGTCTA+GGG - chr3_2:82004249-82004268 None:intergenic 20.0%
!! GAACCAGAAAAATTTATTAA+GGG - chr3_2:82004521-82004540 None:intergenic 20.0%
!!! CTGTTATTCTTTTTTAAACA+AGG + chr3_2:82004740-82004759 Msa0430290:intron 20.0%
!! AGAATCAAACATTAAATCAT+TGG - chr3_2:82005405-82005424 None:intergenic 20.0%
!! TTGAATTAAAACAAGGTATA+TGG - chr3_2:82005749-82005768 None:intergenic 20.0%
!!! GTTTAAGTTGAATTAAAACA+AGG - chr3_2:82005756-82005775 None:intergenic 20.0%
!! ATCATATGCAAAAAATCATA+CGG + chr3_2:82005852-82005871 Msa0430290:intron 20.0%
!! AAAAACTTTCTTATAACTAC+AGG - chr3_2:82005964-82005983 None:intergenic 20.0%
!!! AGTTATAAGAAAGTTTTTAG+TGG + chr3_2:82005966-82005985 Msa0430290:intron 20.0%
!!! TTATTGATAGTAAAACGATA+GGG - chr3_2:82006926-82006945 None:intergenic 20.0%
!!! TTTATTGATAGTAAAACGAT+AGG - chr3_2:82006927-82006946 None:intergenic 20.0%
!! TTACTATCAATAAAACTACA+AGG + chr3_2:82006933-82006952 Msa0430290:intron 20.0%
!! ATCTATTGTAGTAAATAAGA+TGG - chr3_2:82007169-82007188 None:intergenic 20.0%
!! TTATATGGAACAATATTAGT+TGG - chr3_2:82007256-82007275 None:intergenic 20.0%
!! TCTAAAGAGTAAAGATTATA+TGG - chr3_2:82007271-82007290 None:intergenic 20.0%
!!! TTATTTTGAGTAGATAAACA+AGG - chr3_2:82007369-82007388 None:intergenic 20.0%
!! TTATCTACTCAAAATAATGT+TGG + chr3_2:82007372-82007391 Msa0430290:intron 20.0%
!! TAGTTTAATCAATGATCTTA+AGG - chr3_2:82008065-82008084 None:intergenic 20.0%
!!! CAACATTTTAAAATGTTTTG+TGG + chr3_2:82008641-82008660 Msa0430290:three_prime_UTR 20.0%
!!! ATTTAGATTTTTTTTGGGGT+TGG - chr3_2:82001696-82001715 None:intergenic 25.0%
! AACCCCAAAAAAAATCTAAA+TGG + chr3_2:82001695-82001714 Msa0430290:exon 25.0%
! AAGAATCTGATTATCGAAAA+TGG + chr3_2:82001937-82001956 Msa0430290:CDS 25.0%
!!! TGAATTTAATTTTGTGTGCT+AGG + chr3_2:82002094-82002113 Msa0430290:intron 25.0%
!! TTATTTTCATAAGTTCTGCA+TGG - chr3_2:82002311-82002330 None:intergenic 25.0%
! AATAAACTGAAAACAGCTTA+TGG + chr3_2:82002326-82002345 Msa0430290:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr3_2:82002585-82002604 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr3_2:82002586-82002605 None:intergenic 25.0%
! TAATTAAACACTAATTCAGG+AGG - chr3_2:82002862-82002881 None:intergenic 25.0%
! CTTATTAATACAACTAAAGC+TGG - chr3_2:82002998-82003017 None:intergenic 25.0%
! CAAGAATACTACATCTTAAA+CGG + chr3_2:82003055-82003074 Msa0430290:intron 25.0%
! TCTGCATAAAAATAAAACCA+TGG + chr3_2:82003234-82003253 Msa0430290:intron 25.0%
!!! TGAAATTTTTTTATGAGGCA+AGG - chr3_2:82003526-82003545 None:intergenic 25.0%
!!! ATAAGCTTTATTAGCAAACA+AGG + chr3_2:82003709-82003728 Msa0430290:intron 25.0%
! TGAAATTCAATCAACAAGAT+GGG - chr3_2:82003935-82003954 None:intergenic 25.0%
! ATGAAATTCAATCAACAAGA+TGG - chr3_2:82003936-82003955 None:intergenic 25.0%
!! AAATGAAACCATTTTGGATT+GGG - chr3_2:82004030-82004049 None:intergenic 25.0%
!! TAAATGAAACCATTTTGGAT+TGG - chr3_2:82004031-82004050 None:intergenic 25.0%
!! TACTCTAAATGAAACCATTT+TGG - chr3_2:82004036-82004055 None:intergenic 25.0%
! AATAAGAAGAGAGAAACAAT+AGG - chr3_2:82004088-82004107 None:intergenic 25.0%
!! TATTGTTTCTCTCTTCTTAT+TGG + chr3_2:82004087-82004106 Msa0430290:intron 25.0%
!! GAATGAGATTTTAAATGTCT+AGG - chr3_2:82004250-82004269 None:intergenic 25.0%
! TGAAAACATAAACTTGTGTT+GGG - chr3_2:82004459-82004478 None:intergenic 25.0%
! TTGAAAACATAAACTTGTGT+TGG - chr3_2:82004460-82004479 None:intergenic 25.0%
! GGAACCAGAAAAATTTATTA+AGG - chr3_2:82004522-82004541 None:intergenic 25.0%
! TTTACACACTCTATTCTATA+AGG - chr3_2:82004809-82004828 None:intergenic 25.0%
! ATCTGAGAAAAGAAGAAAAT+AGG + chr3_2:82004928-82004947 Msa0430290:intron 25.0%
! ATACAGGGGATAAAATATAT+TGG + chr3_2:82005075-82005094 Msa0430290:intron 25.0%
! TGTATAAGTTGCATACAAAT+GGG - chr3_2:82005297-82005316 None:intergenic 25.0%
!!! CTATTGCAATACTTTTTTGT+TGG + chr3_2:82005444-82005463 Msa0430290:intron 25.0%
! GCTATAATACTAGCAATATT+GGG - chr3_2:82005493-82005512 None:intergenic 25.0%
! AGCTATAATACTAGCAATAT+TGG - chr3_2:82005494-82005513 None:intergenic 25.0%
!! ATACAGTATAATCTTCCTTT+TGG + chr3_2:82005514-82005533 Msa0430290:intron 25.0%
! ATATGGAGTATAAGTTAAGT+AGG - chr3_2:82005732-82005751 None:intergenic 25.0%
!!! ATGATTTTTTGCATATGATG+TGG - chr3_2:82005851-82005870 None:intergenic 25.0%
! AGAACTAAGGTAAGAAAATA+AGG + chr3_2:82005913-82005932 Msa0430290:intron 25.0%
! GAACTAAGGTAAGAAAATAA+GGG + chr3_2:82005914-82005933 Msa0430290:intron 25.0%
! AATTCAAGAATTAAGGGATA+AGG - chr3_2:82006122-82006141 None:intergenic 25.0%
! CCAACAAATTCAAGAATTAA+GGG - chr3_2:82006128-82006147 None:intergenic 25.0%
!!! TTAATTCTTGAATTTGTTGG+CGG + chr3_2:82006128-82006147 Msa0430290:intron 25.0%
! ACATCAATTTGCATTTGAAT+AGG - chr3_2:82006189-82006208 None:intergenic 25.0%
!!! TGTTTAGTTGTTTTTCTGTT+AGG + chr3_2:82006399-82006418 Msa0430290:intron 25.0%
!!! ATTTATTGACTTCCTTTCAA+AGG - chr3_2:82006440-82006459 None:intergenic 25.0%
! TGAAAGGAAGTCAATAAATA+AGG + chr3_2:82006441-82006460 Msa0430290:intron 25.0%
! GAAATAATTGTCAGATTCAT+GGG + chr3_2:82006608-82006627 Msa0430290:intron 25.0%
!! TTTCTTTGGGAATAAAATCA+TGG + chr3_2:82006711-82006730 Msa0430290:intron 25.0%
!! TTCTTTGGGAATAAAATCAT+GGG + chr3_2:82006712-82006731 Msa0430290:intron 25.0%
!!! TTTAACTTGGTAACAAACAT+AGG + chr3_2:82006787-82006806 Msa0430290:intron 25.0%
! TGGTTTAAAAAATTATTCCC+AGG - chr3_2:82006838-82006857 None:intergenic 25.0%
!!! TGGGAATAATTTTTTAAACC+AGG + chr3_2:82006837-82006856 Msa0430290:intron 25.0%
! AAAGTAGTGACAATAGAAAA+AGG - chr3_2:82006971-82006990 None:intergenic 25.0%
! ATTCTTAATGGTTAAACCTA+AGG + chr3_2:82007003-82007022 Msa0430290:intron 25.0%
!! TCATGTGATTTGTGAATTTA+TGG - chr3_2:82007108-82007127 None:intergenic 25.0%
! GACTTTATTAGTACATCAAT+TGG - chr3_2:82007317-82007336 None:intergenic 25.0%
!!! CTCTTTTTCAATGATGATTT+TGG - chr3_2:82007565-82007584 None:intergenic 25.0%
! ATGTTGATATTCAGAATAGT+GGG - chr3_2:82007820-82007839 None:intergenic 25.0%
! AATGTTGATATTCAGAATAG+TGG - chr3_2:82007821-82007840 None:intergenic 25.0%
! AATAATCAATTGATAAGGAG+GGG - chr3_2:82007903-82007922 None:intergenic 25.0%
! CAATAATCAATTGATAAGGA+GGG - chr3_2:82007904-82007923 None:intergenic 25.0%
! ACAATAATCAATTGATAAGG+AGG - chr3_2:82007905-82007924 None:intergenic 25.0%
! AAAAACTACCACAAGATTAA+AGG - chr3_2:82007936-82007955 None:intergenic 25.0%
!! TTTAATCTTGTGGTAGTTTT+TGG + chr3_2:82007935-82007954 Msa0430290:intron 25.0%
! TGATGTAAATTTCAACGAAA+TGG - chr3_2:82008037-82008056 None:intergenic 25.0%
!! TCTTTTTAATGTATTCTCGA+AGG - chr3_2:82008228-82008247 None:intergenic 25.0%
! AAATGTTGCAAGAATGAAAA+AGG - chr3_2:82008629-82008648 None:intergenic 25.0%
!!! GGCCATTTAGATTTTTTTTG+GGG - chr3_2:82001700-82001719 None:intergenic 30.0%
!!! CGGCCATTTAGATTTTTTTT+GGG - chr3_2:82001701-82001720 None:intergenic 30.0%
ATCTGATTATCGAAAATGGA+AGG + chr3_2:82001941-82001960 Msa0430290:CDS 30.0%
! AATTTTGTGTGCTAGGTATA+TGG + chr3_2:82002101-82002120 Msa0430290:intron 30.0%
! CTCTCAAATAGTCTTACATA+TGG + chr3_2:82002376-82002395 Msa0430290:intron 30.0%
! CTTAGTTTGAGTATATCTAC+TGG - chr3_2:82002407-82002426 None:intergenic 30.0%
AGTCAATTCAAACAGATACT+TGG + chr3_2:82002558-82002577 Msa0430290:intron 30.0%
GTCAATTCAAACAGATACTT+GGG + chr3_2:82002559-82002578 Msa0430290:intron 30.0%
! GCTTATAAGCACTTTTGTAT+AGG + chr3_2:82002625-82002644 Msa0430290:intron 30.0%
TGGCTTATTTGTTTATCTAC+TGG - chr3_2:82002814-82002833 None:intergenic 30.0%
! AAGTAGATTAAGAGCTTGTT+TGG - chr3_2:82002839-82002858 None:intergenic 30.0%
! AGTCTGTGCATAATAGTTTT+CGG + chr3_2:82003196-82003215 Msa0430290:intron 30.0%
TTTGGTTGGGACAAAAAATT+TGG + chr3_2:82003639-82003658 Msa0430290:intron 30.0%
AAACTAGGTGTACGAATTTA+GGG + chr3_2:82003852-82003871 Msa0430290:intron 30.0%
GAAATTCAATCAACAAGATG+GGG - chr3_2:82003934-82003953 None:intergenic 30.0%
! AATGAAACCATTTTGGATTG+GGG - chr3_2:82004029-82004048 None:intergenic 30.0%
AAAACAACAAAGAGAGAGAA+AGG + chr3_2:82004113-82004132 Msa0430290:intron 30.0%
CTAGGAAATATGTATGAAAG+TGG - chr3_2:82004278-82004297 None:intergenic 30.0%
CTTTCATACATATTTCCTAG+AGG + chr3_2:82004278-82004297 Msa0430290:intron 30.0%
CAATTGCTGTACATCAAATT+TGG + chr3_2:82004317-82004336 Msa0430290:intron 30.0%
CGAAAATTTAACACATGTGT+GGG - chr3_2:82004495-82004514 None:intergenic 30.0%
CCAGAAAAATTTATTAAGGG+TGG - chr3_2:82004518-82004537 None:intergenic 30.0%
! CCACCCTTAATAAATTTTTC+TGG + chr3_2:82004515-82004534 Msa0430290:intron 30.0%
!!! TCTTTTTTAAACAAGGGCAA+TGG + chr3_2:82004747-82004766 Msa0430290:intron 30.0%
!! ATGGCAGTATTGATCATTAT+TGG + chr3_2:82004766-82004785 Msa0430290:intron 30.0%
! TTGATCATTATTGGTTGAGT+TGG + chr3_2:82004775-82004794 Msa0430290:intron 30.0%
ATAGAATAGAGTGTGTAAAG+AGG + chr3_2:82004810-82004829 Msa0430290:intron 30.0%
TAGAATAGAGTGTGTAAAGA+GGG + chr3_2:82004811-82004830 Msa0430290:intron 30.0%
TTTGGTGGAAGCTAATTTAT+AGG - chr3_2:82005117-82005136 None:intergenic 30.0%
!! AAATTTTCTTTTGGGTGCTT+TGG - chr3_2:82005135-82005154 None:intergenic 30.0%
TATAAAATGTTCAAGCCTTC+AGG + chr3_2:82005156-82005175 Msa0430290:intron 30.0%
ATAAAATGTTCAAGCCTTCA+GGG + chr3_2:82005157-82005176 Msa0430290:intron 30.0%
TACAAATGGGAATAATACCA+TGG - chr3_2:82005284-82005303 None:intergenic 30.0%
GTGTATAAGTTGCATACAAA+TGG - chr3_2:82005298-82005317 None:intergenic 30.0%
TTGTATGCAACTTATACACA+AGG + chr3_2:82005299-82005318 Msa0430290:intron 30.0%
TGTATGCAACTTATACACAA+GGG + chr3_2:82005300-82005319 Msa0430290:intron 30.0%
! TCTGGTTCCAAAATAATGAT+CGG - chr3_2:82005343-82005362 None:intergenic 30.0%
! ACATACTAGCCATTATTTCT+TGG + chr3_2:82005366-82005385 Msa0430290:intron 30.0%
AAAGGACATCCAAGAAATAA+TGG - chr3_2:82005378-82005397 None:intergenic 30.0%
CATTAAATCATTGGAGAGAA+AGG - chr3_2:82005396-82005415 None:intergenic 30.0%
TATTGGGAATGAATATTGGA+TGG - chr3_2:82005477-82005496 None:intergenic 30.0%
GCAATATTGGGAATGAATAT+TGG - chr3_2:82005481-82005500 None:intergenic 30.0%
AAGCGAGGTTAATTAAATAG+AGG - chr3_2:82005582-82005601 None:intergenic 30.0%
ATAAAGTGAGATATCAACCA+TGG - chr3_2:82005609-82005628 None:intergenic 30.0%
! TGATTTTATATGATGAACCC+TGG + chr3_2:82005637-82005656 Msa0430290:intron 30.0%
! AAAATAGAGATCTAGAGTAG+TGG - chr3_2:82005807-82005826 None:intergenic 30.0%
!! TTAGTTCTAGATGTGATTAC+TGG - chr3_2:82005901-82005920 None:intergenic 30.0%
! AGTAATCACATCTAGAACTA+AGG + chr3_2:82005900-82005919 Msa0430290:intron 30.0%
GATAAGGAACATTGAATTGA+TGG - chr3_2:82006106-82006125 None:intergenic 30.0%
CCCTTAATTCTTGAATTTGT+TGG + chr3_2:82006125-82006144 Msa0430290:intron 30.0%
GCCAACAAATTCAAGAATTA+AGG - chr3_2:82006129-82006148 None:intergenic 30.0%
!! TAATTCTTGAATTTGTTGGC+GGG + chr3_2:82006129-82006148 Msa0430290:intron 30.0%
TAGGTTCAATAATAGAGACA+TGG - chr3_2:82006170-82006189 None:intergenic 30.0%
! ATAAAAAGTCTTGTCCCATT+AGG + chr3_2:82006227-82006246 Msa0430290:intron 30.0%
! TTATTTTCCTGCATGATCTA+TGG - chr3_2:82006294-82006313 None:intergenic 30.0%
ATGTCAAAGATCCTTTCAAA+GGG - chr3_2:82006476-82006495 None:intergenic 30.0%
AATGTCAAAGATCCTTTCAA+AGG - chr3_2:82006477-82006496 None:intergenic 30.0%
! AGGATCTTTGACATTTTCTT+AGG + chr3_2:82006482-82006501 Msa0430290:intron 30.0%
! GGATCTTTGACATTTTCTTA+GGG + chr3_2:82006483-82006502 Msa0430290:intron 30.0%
! GATCTTTGACATTTTCTTAG+GGG + chr3_2:82006484-82006503 Msa0430290:intron 30.0%
! ATCTTTGACATTTTCTTAGG+GGG + chr3_2:82006485-82006504 Msa0430290:intron 30.0%
ACGGTTTAAATTTCATTCCT+AGG + chr3_2:82006518-82006537 Msa0430290:intron 30.0%
AACAATGGACATCTTATTCT+TGG + chr3_2:82006561-82006580 Msa0430290:intron 30.0%
ACAATGGACATCTTATTCTT+GGG + chr3_2:82006562-82006581 Msa0430290:intron 30.0%
! GATTTTATTCCCAAAGAAAG+TGG - chr3_2:82006710-82006729 None:intergenic 30.0%
AAGTTAAAAAAACAACTCCC+GGG - chr3_2:82006775-82006794 None:intergenic 30.0%
CAAGTTAAAAAAACAACTCC+CGG - chr3_2:82006776-82006795 None:intergenic 30.0%
TAGAACTCTGACATTCTTAA+TGG + chr3_2:82006991-82007010 Msa0430290:intron 30.0%
GTTGGACTTATTTATACTTC+AGG + chr3_2:82007390-82007409 Msa0430290:intron 30.0%
TGTCAATATCAATGTGACAA+GGG - chr3_2:82007489-82007508 None:intergenic 30.0%
TGATTATCATGTCAAGTGTA+GGG + chr3_2:82007609-82007628 Msa0430290:intron 30.0%
TTCATCAAATGAATTGTGAC+CGG - chr3_2:82007722-82007741 None:intergenic 30.0%
GAAATCATGTTTACGCTAAT+TGG + chr3_2:82007739-82007758 Msa0430290:intron 30.0%
! ATATTCAGAATAGTGGGATT+CGG - chr3_2:82007814-82007833 None:intergenic 30.0%
TATTGTTGCCTTTAATCTTG+TGG + chr3_2:82007925-82007944 Msa0430290:intron 30.0%
!! CTTTTTGTTGTAAGAACTGA+TGG + chr3_2:82008172-82008191 Msa0430290:CDS 30.0%
! AGTAGTTGATGTATGTATAG+TGG + chr3_2:82008298-82008317 Msa0430290:exon 30.0%
!!! AACATCAAGCTTGTTTTGAA+GGG + chr3_2:82008444-82008463 Msa0430290:three_prime_UTR 30.0%
GGATGAAGAAATTGGTTATT+GGG + chr3_2:82008525-82008544 Msa0430290:three_prime_UTR 30.0%
AATTTCCTATGATATAGAGG+TGG - chr3_2:82008590-82008609 None:intergenic 30.0%
GTGAATTTCCTATGATATAG+AGG - chr3_2:82008593-82008612 None:intergenic 30.0%
!!! GCGGCCATTTAGATTTTTTT+TGG - chr3_2:82001702-82001721 None:intergenic 35.0%
!!! TTATCGTTTGGTTTTTCCGA+CGG - chr3_2:82001846-82001865 None:intergenic 35.0%
! CCGATTTAACGTGTTGTTAA+CGG - chr3_2:82001877-82001896 None:intergenic 35.0%
CCGTTAACAACACGTTAAAT+CGG + chr3_2:82001874-82001893 Msa0430290:CDS 35.0%
ACCTATTATCGTGCTTACTA+AGG + chr3_2:82001995-82002014 Msa0430290:CDS 35.0%
TCCTTAGTAAGCACGATAAT+AGG - chr3_2:82001999-82002018 None:intergenic 35.0%
TCTGAAGATAAGATTGGATG+TGG + chr3_2:82002192-82002211 Msa0430290:CDS 35.0%
! ATGTGGTCTTGAATCCATTA+TGG + chr3_2:82002209-82002228 Msa0430290:CDS 35.0%
GCTATAAGTGCTTACCATAA+TGG - chr3_2:82002226-82002245 None:intergenic 35.0%
TTATAAGCGCTTGTGCTATA+AGG - chr3_2:82002613-82002632 None:intergenic 35.0%
GCTCACATAAGCTATTTGTA+TGG + chr3_2:82002647-82002666 Msa0430290:intron 35.0%
!! CAAGTTTTGTGAGACTGTTT+CGG - chr3_2:82002791-82002810 None:intergenic 35.0%
! GATTAAGAGCTTGTTTGGAT+TGG - chr3_2:82002834-82002853 None:intergenic 35.0%
! CAAGTTAAGCCAAACCTTTT+CGG - chr3_2:82003359-82003378 None:intergenic 35.0%
ATCAAGTATCCTCGAATTAG+AGG + chr3_2:82003383-82003402 Msa0430290:intron 35.0%
AACTGAAAACCTCTAATTCG+AGG - chr3_2:82003395-82003414 None:intergenic 35.0%
TACTCTGAACATAGAGTAGA+AGG + chr3_2:82003496-82003515 Msa0430290:intron 35.0%
GTTGGGACAAAAAATTTGGT+GGG + chr3_2:82003643-82003662 Msa0430290:intron 35.0%
! TTGGGACAAAAAATTTGGTG+GGG + chr3_2:82003644-82003663 Msa0430290:intron 35.0%
TAGGTTGCTGAAAAAATCAC+TGG + chr3_2:82003676-82003695 Msa0430290:intron 35.0%
!! AGCTTTATTAGCAAACAAGG+TGG + chr3_2:82003712-82003731 Msa0430290:intron 35.0%
! GCTTTATTAGCAAACAAGGT+GGG + chr3_2:82003713-82003732 Msa0430290:intron 35.0%
! GGTGGGTAAACTAATTTTCA+AGG + chr3_2:82003730-82003749 Msa0430290:intron 35.0%
! TAATTTGTCATGACGTATGC+TGG + chr3_2:82003761-82003780 Msa0430290:intron 35.0%
GAAACTAGGTGTACGAATTT+AGG + chr3_2:82003851-82003870 Msa0430290:intron 35.0%
AACTAGGTGTACGAATTTAG+GGG + chr3_2:82003853-82003872 Msa0430290:intron 35.0%
AAAATGTCATGACTGTGTAC+CGG + chr3_2:82003896-82003915 Msa0430290:intron 35.0%
! TTTAAATGTCTAGGGTGATG+TGG - chr3_2:82004241-82004260 None:intergenic 35.0%
TGCAAGAATTAATCTCCTCT+AGG - chr3_2:82004296-82004315 None:intergenic 35.0%
GCGAAAATTTAACACATGTG+TGG - chr3_2:82004496-82004515 None:intergenic 35.0%
! TATATCTTGAGCATTGCAAC+CGG - chr3_2:82004569-82004588 None:intergenic 35.0%
TTATCATATGTTGAAGTCCC+TGG - chr3_2:82004626-82004645 None:intergenic 35.0%
!! TCATTATTGGTTGAGTTGGT+TGG + chr3_2:82004779-82004798 Msa0430290:intron 35.0%
!! CATTATTGGTTGAGTTGGTT+GGG + chr3_2:82004780-82004799 Msa0430290:intron 35.0%
!! ATTATTGGTTGAGTTGGTTG+GGG + chr3_2:82004781-82004800 Msa0430290:intron 35.0%
! TATTTTATCCCCTGTATGCA+GGG - chr3_2:82005072-82005091 None:intergenic 35.0%
! ATATTTTATCCCCTGTATGC+AGG - chr3_2:82005073-82005092 None:intergenic 35.0%
AGAGATTGAAATAGCTAGAG+AGG + chr3_2:82005194-82005213 Msa0430290:intron 35.0%
TGAAATAGCTAGAGAGGTTA+TGG + chr3_2:82005200-82005219 Msa0430290:intron 35.0%
AGAGGTTATGGAAGAAGATA+AGG + chr3_2:82005212-82005231 Msa0430290:intron 35.0%
TTCCTAAGAAGAGAAATCCA+TGG + chr3_2:82005264-82005283 Msa0430290:intron 35.0%
TACCATGGATTTCTCTTCTT+AGG - chr3_2:82005269-82005288 None:intergenic 35.0%
! TGAACCTCCGATCATTATTT+TGG + chr3_2:82005333-82005352 Msa0430290:intron 35.0%
TAATGGCTAGTATGTTTCTC+TGG - chr3_2:82005361-82005380 None:intergenic 35.0%
TATCATATCACAACTCTCAC+TGG - chr3_2:82005671-82005690 None:intergenic 35.0%
ATGGCTAATAGCAAAGAAGT+TGG - chr3_2:82006087-82006106 None:intergenic 35.0%
AAAGCTGCAAACAAACACTT+AGG - chr3_2:82006323-82006342 None:intergenic 35.0%
AAAGATCCTTTCAAAGGGAA+AGG - chr3_2:82006471-82006490 None:intergenic 35.0%
ATGGGAATTGTTTGTGATAG+TGG + chr3_2:82006626-82006645 Msa0430290:intron 35.0%
TGGGAATTGTTTGTGATAGT+GGG + chr3_2:82006627-82006646 Msa0430290:intron 35.0%
!! GTTTGTGATAGTGGGTATAT+AGG + chr3_2:82006635-82006654 Msa0430290:intron 35.0%
GGAATAAAATCATGGGTAAG+TGG + chr3_2:82006719-82006738 Msa0430290:intron 35.0%
!!! GTGGAAGCTATTTTTTTCCT+AGG + chr3_2:82006738-82006757 Msa0430290:intron 35.0%
!!! CGGGAGTTGTTTTTTTAACT+TGG + chr3_2:82006774-82006793 Msa0430290:intron 35.0%
AAAAATTATTCCCAGGAACG+TGG - chr3_2:82006831-82006850 None:intergenic 35.0%
TTTATGACAGTCAACTAAGG+GGG - chr3_2:82006872-82006891 None:intergenic 35.0%
GTTTATGACAGTCAACTAAG+GGG - chr3_2:82006873-82006892 None:intergenic 35.0%
GGTTTATGACAGTCAACTAA+GGG - chr3_2:82006874-82006893 None:intergenic 35.0%
CTTAGTTGACTGTCATAAAC+CGG + chr3_2:82006873-82006892 Msa0430290:intron 35.0%
AGAAGATCACGAAAAACCTT+AGG - chr3_2:82007022-82007041 None:intergenic 35.0%
! TCGTGATCTTCTTTTACTTC+TGG + chr3_2:82007030-82007049 Msa0430290:intron 35.0%
! CGTGATCTTCTTTTACTTCT+GGG + chr3_2:82007031-82007050 Msa0430290:intron 35.0%
GAGTGAAAACTACAATAGAG+AGG - chr3_2:82007207-82007226 None:intergenic 35.0%
ATCAGTTTGTGATTATGCTG+GGG - chr3_2:82007433-82007452 None:intergenic 35.0%
CATCAGTTTGTGATTATGCT+GGG - chr3_2:82007434-82007453 None:intergenic 35.0%
ACATCAGTTTGTGATTATGC+TGG - chr3_2:82007435-82007454 None:intergenic 35.0%
GTCAATATCAATGTGACAAG+GGG - chr3_2:82007488-82007507 None:intergenic 35.0%
GTGTCAATATCAATGTGACA+AGG - chr3_2:82007490-82007509 None:intergenic 35.0%
TGTCACATTGATATTGACAC+AGG + chr3_2:82007490-82007509 Msa0430290:intron 35.0%
CTGATTATCATGTCAAGTGT+AGG + chr3_2:82007608-82007627 Msa0430290:intron 35.0%
CTAATAACTTATGCCTTCGT+TGG + chr3_2:82007691-82007710 Msa0430290:intron 35.0%
TCATCAAATGAATTGTGACC+GGG - chr3_2:82007721-82007740 None:intergenic 35.0%
! TATTCAGAATAGTGGGATTC+GGG - chr3_2:82007813-82007832 None:intergenic 35.0%
!! ATGCGACTTATTTTTCTTGC+AGG + chr3_2:82008114-82008133 Msa0430290:intron 35.0%
! TTTGTTGTAAGAACTGATGG+TGG + chr3_2:82008175-82008194 Msa0430290:CDS 35.0%
!!! CAACATCAAGCTTGTTTTGA+AGG + chr3_2:82008443-82008462 Msa0430290:three_prime_UTR 35.0%
AACTTCACTTCATACACTTG+AGG + chr3_2:82008489-82008508 Msa0430290:three_prime_UTR 35.0%
GGGATGAAGAAATTGGTTAT+TGG + chr3_2:82008524-82008543 Msa0430290:three_prime_UTR 35.0%
CTTTACCACCTCTATATCAT+AGG + chr3_2:82008582-82008601 Msa0430290:three_prime_UTR 35.0%
!!! GCATCGGTTTTTTAACTACT+TGG + chr3_2:82008677-82008696 Msa0430290:three_prime_UTR 35.0%
GAAAATGACCCGACATAGTA+AGG + chr3_2:82001609-82001628 Msa0430290:five_prime_UTR 40.0%
TGACACACTCCTTACTATGT+CGG - chr3_2:82001621-82001640 None:intergenic 40.0%
! CGGTGAAGTGTTTGTAGTTA+TGG - chr3_2:82001767-82001786 None:intergenic 40.0%
ACGGAGTTAGGTTTATCGTT+TGG - chr3_2:82001858-82001877 None:intergenic 40.0%
! AACGTGTTGTTAACGGAGTT+AGG - chr3_2:82001870-82001889 None:intergenic 40.0%
CAGATTCTTCATCCTCCAAA+CGG - chr3_2:82001926-82001945 None:intergenic 40.0%
TTGTGTGCTAGGTATATGGA+TGG + chr3_2:82002105-82002124 Msa0430290:intron 40.0%
CCAATCTTATCTTCAGAGTG+TGG - chr3_2:82002189-82002208 None:intergenic 40.0%
! CCACACTCTGAAGATAAGAT+TGG + chr3_2:82002186-82002205 Msa0430290:CDS 40.0%
! CAAACTAAGAAGCTCTGACA+CGG + chr3_2:82002418-82002437 Msa0430290:intron 40.0%
TATGAAGCACAGATACTCCT+CGG - chr3_2:82002530-82002549 None:intergenic 40.0%
CTCTGTATATGTGTCATGTG+TGG + chr3_2:82003126-82003145 Msa0430290:intron 40.0%
GGTCATGGTTGAAATAACCA+TGG - chr3_2:82003254-82003273 None:intergenic 40.0%
TATTTCAACCATGACCAGAC+AGG + chr3_2:82003258-82003277 Msa0430290:intron 40.0%
! GCTTTAGGCAAACAAGGTTA+AGG - chr3_2:82003327-82003346 None:intergenic 40.0%
TTTCGGAATTTGGCAGCTTT+AGG - chr3_2:82003342-82003361 None:intergenic 40.0%
AAAGCTGCCAAATTCCGAAA+AGG + chr3_2:82003342-82003361 Msa0430290:intron 40.0%
TGCCAAATTCCGAAAAGGTT+TGG + chr3_2:82003347-82003366 Msa0430290:intron 40.0%
! AGCCAAACCTTTTCGGAATT+TGG - chr3_2:82003352-82003371 None:intergenic 40.0%
TTTCAGTTCATCCCTATCAG+TGG + chr3_2:82003407-82003426 Msa0430290:intron 40.0%
TCCATAGAAGACCACTGATA+GGG - chr3_2:82003421-82003440 None:intergenic 40.0%
TTCCATAGAAGACCACTGAT+AGG - chr3_2:82003422-82003441 None:intergenic 40.0%
ATCAGTGGTCTTCTATGGAA+AGG + chr3_2:82003422-82003441 Msa0430290:intron 40.0%
TATGCTACAGGACATAGTGA+AGG - chr3_2:82003478-82003497 None:intergenic 40.0%
CTATGTTCAGAGTATGCTAC+AGG - chr3_2:82003490-82003509 None:intergenic 40.0%
GGTTGGGACAAAAAATTTGG+TGG + chr3_2:82003642-82003661 Msa0430290:intron 40.0%
! TGGGACAAAAAATTTGGTGG+GGG + chr3_2:82003645-82003664 Msa0430290:intron 40.0%
TTTGGTGGGGGTGATAAAAT+AGG + chr3_2:82003657-82003676 Msa0430290:intron 40.0%
!! TATCATATTAGCTCTGACCC+AGG + chr3_2:82003825-82003844 Msa0430290:intron 40.0%
!! ATCATATTAGCTCTGACCCA+GGG + chr3_2:82003826-82003845 Msa0430290:intron 40.0%
! TCATGACATTTTGGACCTTG+GGG - chr3_2:82003888-82003907 None:intergenic 40.0%
! GTCATGACATTTTGGACCTT+GGG - chr3_2:82003889-82003908 None:intergenic 40.0%
! AGTCATGACATTTTGGACCT+TGG - chr3_2:82003890-82003909 None:intergenic 40.0%
! GGTACACAGTCATGACATTT+TGG - chr3_2:82003897-82003916 None:intergenic 40.0%
! ATATCTTGAGCATTGCAACC+GGG - chr3_2:82004568-82004587 None:intergenic 40.0%
TGAAAACTACACAACAAGCC+AGG + chr3_2:82004605-82004624 Msa0430290:intron 40.0%
GAAAACTACACAACAAGCCA+GGG + chr3_2:82004606-82004625 Msa0430290:intron 40.0%
TAGAGTGTGTAAAGAGGGAA+AGG + chr3_2:82004816-82004835 Msa0430290:intron 40.0%
TGTAAAGAGGGAAAGGTCAA+AGG + chr3_2:82004823-82004842 Msa0430290:intron 40.0%
GTAAAGAGGGAAAGGTCAAA+GGG + chr3_2:82004824-82004843 Msa0430290:intron 40.0%
!! ATGCTCTGAAGCATCATCAT+TGG + chr3_2:82004864-82004883 Msa0430290:intron 40.0%
! TCTGAAGCATCATCATTGGT+GGG + chr3_2:82004868-82004887 Msa0430290:intron 40.0%
!! TTTTCTTTTGGGTGCTTTGG+TGG - chr3_2:82005132-82005151 None:intergenic 40.0%
CAAGCATATCATATCCCTGA+AGG - chr3_2:82005174-82005193 None:intergenic 40.0%
CTTAGGAAGACGTAAGTCTT+AGG - chr3_2:82005252-82005271 None:intergenic 40.0%
GGTTCCAAAATAATGATCGG+AGG - chr3_2:82005340-82005359 None:intergenic 40.0%
!!! AATCTTCCTTTTGGTTCGAG+TGG + chr3_2:82005523-82005542 Msa0430290:intron 40.0%
! AAAGTACCACTCGAACCAAA+AGG - chr3_2:82005532-82005551 None:intergenic 40.0%
ATTAACCTCGCTTGAATCCA+TGG + chr3_2:82005589-82005608 Msa0430290:intron 40.0%
! AGATCTAGAGTAGTGGAGAA+AGG - chr3_2:82005800-82005819 None:intergenic 40.0%
GCATATGATGTGGTCATAGT+TGG - chr3_2:82005841-82005860 None:intergenic 40.0%
AATCATACGGTGTGACAAGT+TGG + chr3_2:82005865-82005884 Msa0430290:intron 40.0%
TAACTACAGGACTAAAGCAG+AGG - chr3_2:82005951-82005970 None:intergenic 40.0%
ACGACAAGCATGAAAACACA+AGG - chr3_2:82005992-82006011 None:intergenic 40.0%
AGGTATGAGATGACTCAAAG+AGG - chr3_2:82006034-82006053 None:intergenic 40.0%
AGTTGGACCAAAGATATGCA+TGG - chr3_2:82006070-82006089 None:intergenic 40.0%
! AAAAGTCTTGTCCCATTAGG+TGG + chr3_2:82006230-82006249 Msa0430290:intron 40.0%
! AAAGTCTTGTCCCATTAGGT+GGG + chr3_2:82006231-82006250 Msa0430290:intron 40.0%
TGATCTATGGTAGGACATCA+AGG - chr3_2:82006281-82006300 None:intergenic 40.0%
TTTCCTGCATGATCTATGGT+AGG - chr3_2:82006290-82006309 None:intergenic 40.0%
GGAATTCCTTTCCCTTTGAA+AGG + chr3_2:82006462-82006481 Msa0430290:intron 40.0%
TTCCTAGGAATAACCTTTCC+TGG + chr3_2:82006533-82006552 Msa0430290:intron 40.0%
TCCTAGGAATAACCTTTCCT+GGG + chr3_2:82006534-82006553 Msa0430290:intron 40.0%
!! CCATTGTTATTTCCCAGGAA+AGG - chr3_2:82006549-82006568 None:intergenic 40.0%
CCTTTCCTGGGAAATAACAA+TGG + chr3_2:82006546-82006565 Msa0430290:intron 40.0%
!! GATGTCCATTGTTATTTCCC+AGG - chr3_2:82006554-82006573 None:intergenic 40.0%
! TTATTCCCAGCCACTTTCTT+TGG + chr3_2:82006697-82006716 Msa0430290:intron 40.0%
! TATTCCCAGCCACTTTCTTT+GGG + chr3_2:82006698-82006717 Msa0430290:intron 40.0%
TATTCCCAAAGAAAGTGGCT+GGG - chr3_2:82006705-82006724 None:intergenic 40.0%
TTATTCCCAAAGAAAGTGGC+TGG - chr3_2:82006706-82006725 None:intergenic 40.0%
TCCTAGGAATCCTTTATTCC+CGG + chr3_2:82006754-82006773 Msa0430290:intron 40.0%
AAAACAACTCCCGGGAATAA+AGG - chr3_2:82006767-82006786 None:intergenic 40.0%
CGGTTTATGACAGTCAACTA+AGG - chr3_2:82006875-82006894 None:intergenic 40.0%
ACAATAGAGAGGAAGTTGTG+CGG - chr3_2:82007196-82007215 None:intergenic 40.0%
ACAAGGGGAGTTAATTGAGT+CGG - chr3_2:82007473-82007492 None:intergenic 40.0%
TCAATTGATAAGGAGGGGAA+TGG - chr3_2:82007898-82007917 None:intergenic 40.0%
!! ACACCTTGAGTGTCGAAATT+GGG - chr3_2:82008152-82008171 None:intergenic 40.0%
TAAACCTTTCAGCATGAGCT+GGG - chr3_2:82008255-82008274 None:intergenic 40.0%
ATAAACCTTTCAGCATGAGC+TGG - chr3_2:82008256-82008275 None:intergenic 40.0%
TTTGCTGGGGATGAAGAAAT+TGG + chr3_2:82008517-82008536 Msa0430290:three_prime_UTR 40.0%
GAAATTGGTTATTGGGTGAG+TGG + chr3_2:82008532-82008551 Msa0430290:three_prime_UTR 40.0%
!!! GGTTTTTTAACTACTTGGCG+TGG + chr3_2:82008682-82008701 Msa0430290:three_prime_UTR 40.0%
ATGACTCTTGAGCAACATTC+TGG - chr3_2:82008734-82008753 None:intergenic 40.0%
AGAATGTTGCTCAAGAGTCA+TGG + chr3_2:82008733-82008752 Msa0430290:three_prime_UTR 40.0%
GACACACTCCTTACTATGTC+GGG - chr3_2:82001620-82001639 None:intergenic 45.0%
TTGCCTTAGAAGAAGTGGTG+CGG - chr3_2:82001721-82001740 None:intergenic 45.0%
AGAGCTTGCCTTAGAAGAAG+TGG - chr3_2:82001726-82001745 None:intergenic 45.0%
!!! TTTTTCCGACGGTGGATTGA+TGG - chr3_2:82001835-82001854 None:intergenic 45.0%
TCCAAACGGAAGTTACTCGA+CGG - chr3_2:82001912-82001931 None:intergenic 45.0%
TGTGCTAGGTATATGGATGG+AGG + chr3_2:82002108-82002127 Msa0430290:intron 45.0%
GTGCTAGGTATATGGATGGA+GGG + chr3_2:82002109-82002128 Msa0430290:intron 45.0%
GGATGGAGGGACATTAACTT+TGG + chr3_2:82002122-82002141 Msa0430290:CDS 45.0%
TGGAGGGACATTAACTTTGG+AGG + chr3_2:82002125-82002144 Msa0430290:CDS 45.0%
!! TTGGCAGCTTTAGGCAAACA+AGG - chr3_2:82003333-82003352 None:intergenic 45.0%
TCCCTATCAGTGGTCTTCTA+TGG + chr3_2:82003417-82003436 Msa0430290:intron 45.0%
TGGTCTTCTATGGAAAGGTC+AGG + chr3_2:82003427-82003446 Msa0430290:intron 45.0%
GATGGGGATTGTAACTTCTC+CGG - chr3_2:82003918-82003937 None:intergenic 45.0%
ATCACTCATTAGCTGCCTTG+CGG + chr3_2:82003962-82003981 Msa0430290:intron 45.0%
CACTACACCCCAATCCAAAA+TGG + chr3_2:82004019-82004038 Msa0430290:intron 45.0%
! ATGTCTAGGGTGATGTGGAA+AGG - chr3_2:82004236-82004255 None:intergenic 45.0%
!! CTCTGAAGCATCATCATTGG+TGG + chr3_2:82004867-82004886 Msa0430290:intron 45.0%
AGATTGATGGGGGTCAACAT+AGG - chr3_2:82005044-82005063 None:intergenic 45.0%
TATGTTGACCCCCATCAATC+TGG + chr3_2:82005043-82005062 Msa0430290:intron 45.0%
ATCAACCATGGATTCAAGCG+AGG - chr3_2:82005597-82005616 None:intergenic 45.0%
! TCTCACTGGTGAAGTATCCA+GGG - chr3_2:82005657-82005676 None:intergenic 45.0%
ACGAAATTCACTTGCTCCTG+AGG + chr3_2:82005774-82005793 Msa0430290:intron 45.0%
! ATACGGTGTGACAAGTTGGA+TGG + chr3_2:82005869-82005888 Msa0430290:intron 45.0%
TCATGCTTGTCGTGATCTCA+TGG + chr3_2:82005999-82006018 Msa0430290:intron 45.0%
CCAAAGATATGCATGGAGCT+GGG - chr3_2:82006063-82006082 None:intergenic 45.0%
ACCAAAGATATGCATGGAGC+TGG - chr3_2:82006064-82006083 None:intergenic 45.0%
!! TTCTTGAATTTGTTGGCGGG+AGG + chr3_2:82006132-82006151 Msa0430290:intron 45.0%
!! TCTTGAATTTGTTGGCGGGA+GGG + chr3_2:82006133-82006152 Msa0430290:intron 45.0%
TGTAGCCAATCCCACCTAAT+GGG - chr3_2:82006244-82006263 None:intergenic 45.0%
TGTCCTACCATAGATCATGC+AGG + chr3_2:82006284-82006303 Msa0430290:intron 45.0%
TCCCAGGAAAGGTTATTCCT+AGG - chr3_2:82006538-82006557 None:intergenic 45.0%
CCTAGGAATCCTTTATTCCC+GGG + chr3_2:82006755-82006774 Msa0430290:intron 45.0%
AATTCTAACCTCCACGTTCC+TGG + chr3_2:82006817-82006836 Msa0430290:intron 45.0%
ATTCTAACCTCCACGTTCCT+GGG + chr3_2:82006818-82006837 Msa0430290:intron 45.0%
AATTATTCCCAGGAACGTGG+AGG - chr3_2:82006828-82006847 None:intergenic 45.0%
TGACTGTCATAAACCGGTGT+AGG + chr3_2:82006879-82006898 Msa0430290:intron 45.0%
GAGAGAATACTCTCCTACAC+CGG - chr3_2:82006895-82006914 None:intergenic 45.0%
!! TTCTGGGACTATTCTCCACT+TGG + chr3_2:82007047-82007066 Msa0430290:intron 45.0%
AGTAAGGAGGATAGACCAAG+TGG - chr3_2:82007065-82007084 None:intergenic 45.0%
ACTTGGTCTATCCTCCTTAC+TGG + chr3_2:82007064-82007083 Msa0430290:intron 45.0%
TCGCAGAATAACCAGTAAGG+AGG - chr3_2:82007078-82007097 None:intergenic 45.0%
GACTCGCAGAATAACCAGTA+AGG - chr3_2:82007081-82007100 None:intergenic 45.0%
GGTAGAGTCTCATCTCAAGA+TGG - chr3_2:82007148-82007167 None:intergenic 45.0%
GGAGACACACAAGACAAGAT+AGG - chr3_2:82007235-82007254 None:intergenic 45.0%
CACAAGGTTCATCGGAACAA+GGG - chr3_2:82007787-82007806 None:intergenic 45.0%
ACACAAGGTTCATCGGAACA+AGG - chr3_2:82007788-82007807 None:intergenic 45.0%
! AGTGTCGAAATTGGGGATGA+CGG - chr3_2:82008144-82008163 None:intergenic 45.0%
ATCCCCAATTTCGACACTCA+AGG + chr3_2:82008146-82008165 Msa0430290:CDS 45.0%
!! CACCTTGAGTGTCGAAATTG+GGG - chr3_2:82008151-82008170 None:intergenic 45.0%
!! GACACCTTGAGTGTCGAAAT+TGG - chr3_2:82008153-82008172 None:intergenic 45.0%
!! TTGTAAGAACTGATGGTGGC+TGG + chr3_2:82008179-82008198 Msa0430290:CDS 45.0%
! ATTCGAGAACATCTGAAGCG+CGG + chr3_2:82008274-82008293 Msa0430290:CDS 45.0%
ACCGAAAAACTGTGGGACAA+GGG - chr3_2:82008381-82008400 None:intergenic 45.0%
GTAAGCCACCGAAAAACTGT+GGG - chr3_2:82008388-82008407 None:intergenic 45.0%
TGTAAGCCACCGAAAAACTG+TGG - chr3_2:82008389-82008408 None:intergenic 45.0%
ACACTTGAGGAACACTTTGC+TGG + chr3_2:82008502-82008521 Msa0430290:three_prime_UTR 45.0%
CACTTGAGGAACACTTTGCT+GGG + chr3_2:82008503-82008522 Msa0430290:three_prime_UTR 45.0%
ACTTGAGGAACACTTTGCTG+GGG + chr3_2:82008504-82008523 Msa0430290:three_prime_UTR 45.0%
TTGGTTATTGGGTGAGTGGT+AGG + chr3_2:82008536-82008555 Msa0430290:three_prime_UTR 45.0%
TGGTCTCTTCTCTTCAGCAT+CGG + chr3_2:82008661-82008680 Msa0430290:three_prime_UTR 45.0%
!!! TTAATTATTATTGTTATTAA+TGG + chr3_2:82002875-82002894 Msa0430290:intron 5.0%
!!! TTTTATATAAATTTTCTTTT+GGG - chr3_2:82005143-82005162 None:intergenic 5.0%
!!! ATTTTATATAAATTTTCTTT+TGG - chr3_2:82005144-82005163 None:intergenic 5.0%
!!! TCGTTTGGTTTTTCCGACGG+TGG - chr3_2:82001843-82001862 None:intergenic 50.0%
CCAAACGGAAGTTACTCGAC+GGG - chr3_2:82001911-82001930 None:intergenic 50.0%
GTCGAGTAACTTCCGTTTGG+AGG + chr3_2:82001911-82001930 Msa0430290:CDS 50.0%
GGAGGATGAGAAAGCTGTAG+TGG + chr3_2:82002143-82002162 Msa0430290:CDS 50.0%
! CATATGTGTCGCTGTCGACA+CGG + chr3_2:82002463-82002482 Msa0430290:intron 50.0%
ACACGATACGTATCCGACAC+AGG + chr3_2:82002492-82002511 Msa0430290:intron 50.0%
CACGATACGTATCCGACACA+GGG + chr3_2:82002493-82002512 Msa0430290:intron 50.0%
GCACAGATACTCCTCGGATT+AGG - chr3_2:82002524-82002543 None:intergenic 50.0%
ACAGATACTTGGGCCCTGTT+TGG + chr3_2:82002569-82002588 Msa0430290:intron 50.0%
CTACAGGACATAGTGAAGGC+TGG - chr3_2:82003474-82003493 None:intergenic 50.0%
GTACACCTAGTTTCGTCCCT+GGG - chr3_2:82003845-82003864 None:intergenic 50.0%
! TGACATTTTGGACCTTGGGG+TGG - chr3_2:82003885-82003904 None:intergenic 50.0%
!! CATTGCAACCGGGAAGCATT+GGG - chr3_2:82004558-82004577 None:intergenic 50.0%
GACTAGACGCATCGTATGTG+AGG - chr3_2:82004675-82004694 None:intergenic 50.0%
TGCAGGGAGTCCAGATTGAT+GGG - chr3_2:82005056-82005075 None:intergenic 50.0%
ATGCAGGGAGTCCAGATTGA+TGG - chr3_2:82005057-82005076 None:intergenic 50.0%
AATCTGGACTCCCTGCATAC+AGG + chr3_2:82005059-82005078 Msa0430290:intron 50.0%
ATCTGGACTCCCTGCATACA+GGG + chr3_2:82005060-82005079 Msa0430290:intron 50.0%
! CTCTCACTGGTGAAGTATCC+AGG - chr3_2:82005658-82005677 None:intergenic 50.0%
TGCATGGAGCTGGGAAAGAA+AGG - chr3_2:82006054-82006073 None:intergenic 50.0%
CCCAGCTCCATGCATATCTT+TGG + chr3_2:82006060-82006079 Msa0430290:intron 50.0%
!! CTTGAATTTGTTGGCGGGAG+GGG + chr3_2:82006134-82006153 Msa0430290:intron 50.0%
CTTGTCCCATTAGGTGGGAT+TGG + chr3_2:82006236-82006255 Msa0430290:intron 50.0%
GTGTAGCCAATCCCACCTAA+TGG - chr3_2:82006245-82006264 None:intergenic 50.0%
GCGCTCTCAGATCCTTTGAA+AGG + chr3_2:82006425-82006444 Msa0430290:intron 50.0%
!! CTTAGGGGGCGTTTGTTTGA+CGG + chr3_2:82006499-82006518 Msa0430290:intron 50.0%
CCCGGGAATAAAGGATTCCT+AGG - chr3_2:82006758-82006777 None:intergenic 50.0%
!! CTAAGGGGGTGTTTGTTTCC+TGG - chr3_2:82006858-82006877 None:intergenic 50.0%
!! TATGCCTTCGTTGGCTTTCC+CGG + chr3_2:82007700-82007719 Msa0430290:intron 50.0%
TCGGGTGACACAAGGTTCAT+CGG - chr3_2:82007795-82007814 None:intergenic 50.0%
AGTACCCAGCTCATGCTGAA+AGG + chr3_2:82008248-82008267 Msa0430290:CDS 50.0%
! TTCGAGAACATCTGAAGCGC+GGG + chr3_2:82008275-82008294 Msa0430290:CDS 50.0%
CCGAAAAACTGTGGGACAAG+GGG - chr3_2:82008380-82008399 None:intergenic 50.0%
! CCCCTTGTCCCACAGTTTTT+CGG + chr3_2:82008377-82008396 Msa0430290:three_prime_UTR 50.0%
CACCGAAAAACTGTGGGACA+AGG - chr3_2:82008382-82008401 None:intergenic 50.0%
!! CTTGTCCCACAGTTTTTCGG+TGG + chr3_2:82008380-82008399 Msa0430290:three_prime_UTR 50.0%
TGGCCGCACCACTTCTTCTA+AGG + chr3_2:82001715-82001734 Msa0430290:CDS 55.0%
CTTCACCGTCAGAACCGTTG+CGG + chr3_2:82001779-82001798 Msa0430290:CDS 55.0%
!! TTCCGACGGTGGATTGATGG+CGG - chr3_2:82001832-82001851 None:intergenic 55.0%
CCCGTCGAGTAACTTCCGTT+TGG + chr3_2:82001908-82001927 Msa0430290:CDS 55.0%
GATTAGGCGTGTCCCTGTGT+CGG - chr3_2:82002508-82002527 None:intergenic 55.0%
TCTGACCCAGGGACGAAACT+AGG + chr3_2:82003837-82003856 Msa0430290:intron 55.0%
CGTACACCTAGTTTCGTCCC+TGG - chr3_2:82003846-82003865 None:intergenic 55.0%
AGTCAGTGATGTACGCCGCA+AGG - chr3_2:82003980-82003999 None:intergenic 55.0%
!! GGAAGCATTGGGTCAGTGCA+GGG - chr3_2:82004547-82004566 None:intergenic 55.0%
! TGCACTGACCCAATGCTTCC+CGG + chr3_2:82004547-82004566 Msa0430290:intron 55.0%
! GCATTGCAACCGGGAAGCAT+TGG - chr3_2:82004559-82004578 None:intergenic 55.0%
CAGGGAGTCCAGATTGATGG+GGG - chr3_2:82005054-82005073 None:intergenic 55.0%
GCAGGGAGTCCAGATTGATG+GGG - chr3_2:82005055-82005074 None:intergenic 55.0%
TCTGGACTCCCTGCATACAG+GGG + chr3_2:82005061-82005080 Msa0430290:intron 55.0%
! GAGTAGTGGAGAAAGGCCTC+AGG - chr3_2:82005793-82005812 None:intergenic 55.0%
AGTGGGATTCGGGTGACACA+AGG - chr3_2:82007803-82007822 None:intergenic 55.0%
ACAGGGACACGCCTAATCCG+AGG + chr3_2:82002510-82002529 Msa0430290:intron 60.0%
GCAGTCTGCCTGTCTGGTCA+TGG - chr3_2:82003269-82003288 None:intergenic 60.0%
TGACCAGACAGGCAGACTGC+AGG + chr3_2:82003269-82003288 Msa0430290:intron 60.0%
GAACCTGCAGTCTGCCTGTC+TGG - chr3_2:82003275-82003294 None:intergenic 60.0%
GACAGGCAGACTGCAGGTTC+AGG + chr3_2:82003275-82003294 Msa0430290:intron 60.0%
GCATTGGGTCAGTGCAGGGA+CGG - chr3_2:82004543-82004562 None:intergenic 60.0%
!! GGGAAGCATTGGGTCAGTGC+AGG - chr3_2:82004548-82004567 None:intergenic 60.0%
AGGGAAAGGTCAAAGGGCCC+TGG + chr3_2:82004830-82004849 Msa0430290:intron 60.0%
GAAAGGTCAAAGGGCCCTGG+TGG + chr3_2:82004833-82004852 Msa0430290:intron 60.0%
GAGCATCCACCAGACCACCA+GGG - chr3_2:82004850-82004869 None:intergenic 60.0%
! AGAGCATCCACCAGACCACC+AGG - chr3_2:82004851-82004870 None:intergenic 60.0%
GTGACCGGGAAAGCCAACGA+AGG - chr3_2:82007707-82007726 None:intergenic 60.0%
TGAACGATGGCGCGCCGCAA+CGG - chr3_2:82001796-82001815 None:intergenic 65.0%
TTGCGGCGCGCCATCGTTCA+TGG + chr3_2:82001796-82001815 Msa0430290:CDS 65.0%
CGGCGCTGCACCATGAACGA+TGG - chr3_2:82001809-82001828 None:intergenic 65.0%
!! CGACGGTGGATTGATGGCGG+CGG - chr3_2:82001829-82001848 None:intergenic 65.0%
CGCCGCCATCAATCCACCGT+CGG + chr3_2:82001827-82001846 Msa0430290:CDS 65.0%
GTCAAAGGGCCCTGGTGGTC+TGG + chr3_2:82004838-82004857 Msa0430290:intron 65.0%
AAAGGGCCCTGGTGGTCTGG+TGG + chr3_2:82004841-82004860 Msa0430290:intron 65.0%
! GCGCGCCGCAACGGTTCTGA+CGG - chr3_2:82001787-82001806 None:intergenic 70.0%
TAGGGGCAGTCGCCACCCCA+AGG + chr3_2:82003870-82003889 Msa0430290:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82001608 82008789 82001608 ID=Msa0430290;Name=Msa0430290
chr3_2 mRNA 82001608 82008789 82001608 ID=Msa0430290-mRNA-1;Parent=Msa0430290;Name=Msa0430290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|1|1|3|483|202
chr3_2 exon 82001608 82002036 82001608 ID=Msa0430290-mRNA-1:exon:22730;Parent=Msa0430290-mRNA-1
chr3_2 exon 82002116 82002230 82002116 ID=Msa0430290-mRNA-1:exon:22731;Parent=Msa0430290-mRNA-1
chr3_2 exon 82008136 82008789 82008136 ID=Msa0430290-mRNA-1:exon:22732;Parent=Msa0430290-mRNA-1
chr3_2 five_prime_UTR 82001608 82001713 82001608 ID=Msa0430290-mRNA-1:five_prime_utr;Parent=Msa0430290-mRNA-1
chr3_2 CDS 82001714 82002036 82001714 ID=Msa0430290-mRNA-1:cds;Parent=Msa0430290-mRNA-1
chr3_2 CDS 82002116 82002230 82002116 ID=Msa0430290-mRNA-1:cds;Parent=Msa0430290-mRNA-1
chr3_2 CDS 82008136 82008306 82008136 ID=Msa0430290-mRNA-1:cds;Parent=Msa0430290-mRNA-1
chr3_2 three_prime_UTR 82008307 82008789 82008307 ID=Msa0430290-mRNA-1:three_prime_utr;Parent=Msa0430290-mRNA-1
Gene Sequence

>Msa0430290

ATGGCCGCACCACTTCTTCTAAGGCAAGCTCTGTTAATTCGCGCTTGTTTCCATAACTACAAACACTTCACCGTCAGAACCGTTGCGGCGCGCCATCGTTCATGGTGCAGCGCCGCCGCCATCAATCCACCGTCGGAAAAACCAAACGATAAACCTAACTCCGTTAACAACACGTTAAATCGGAGAGATGTTTACCCGTCGAGTAACTTCCGTTTGGAGGATGAAGAATCTGATTATCGAAAATGGAAGGATAAAGAAGATGAGATTTTCAATGATATTGAACCTATTATCGTGCTTACTAAGGAAATTCTTCATTCATCAAAGTATATGGATGGAGGGACATTAACTTTGGAGGATGAGAAAGCTGTAGTGGAAAAGCTTCTTGCTTATCATCCACACTCTGAAGATAAGATTGGATGTGGTCTTGAATCCATTATGGTTGACCGTCATCCCCAATTTCGACACTCAAGGTGTCTTTTTGTTGTAAGAACTGATGGTGGCTGGATTGATTTCTCATATCAGAAGTGCCTTCGAGAATACATTAAAAAGAAGTACCCAGCTCATGCTGAAAGGTTTATTCGAGAACATCTGAAGCGCGGGAGTAGTTGA

Protein sequence

>Msa0430290

MAAPLLLRQALLIRACFHNYKHFTVRTVAARHRSWCSAAAINPPSEKPNDKPNSVNNTLNRRDVYPSSNFRLEDEESDYRKWKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKAVVEKLLAYHPHSEDKIGCGLESIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPAHAERFIREHLKRGSS*