AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380650 MtrunA17_Chr3g0134241 97.030 202 6 0 1 202 1 202 6.93e-150 414
Msa0380650 MtrunA17_Chr3g0133961 48.361 122 62 1 81 201 101 222 2.96e-37 129
Msa0380650 MtrunA17_Chr8g0353071 42.609 115 66 0 85 199 1891 2005 3.22e-27 108
Msa0380650 MtrunA17_Chr5g0398111 41.379 87 48 2 91 177 1362 1445 9.59e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380650 AT3G46630.1 58.974 195 67 5 17 202 17 207 2.83e-70 213
Msa0380650 AT1G45230.1 47.059 119 63 0 81 199 96 214 3.46e-35 124
Msa0380650 AT1G45230.2 48.276 116 60 0 84 199 99 214 1.24e-34 122
Msa0380650 AT2G40030.1 44.348 115 64 0 85 199 1735 1849 4.33e-29 114

Find 68 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATGAAGAAATTGGTTAT+TGG 0.260723 3_1:+82474519 Msa0380650:three_prime_UTR
AAATGTTGCAAGAATGAAAA+AGG 0.269903 3_1:-82474621 None:intergenic
GACACCTTGAGTGTCGAAAT+TGG 0.273641 3_1:-82474145 None:intergenic
CCGATTTAACGTGTTGTTAA+CGG 0.274705 3_1:-82467868 None:intergenic
AAGAATCTGATTATCGAAAA+TGG 0.276535 3_1:+82467931 Msa0380650:CDS
GCTATAAGTGCTTACCATAA+TGG 0.279775 3_1:-82468217 None:intergenic
TTTGCTGGGGATGAAGAAAT+TGG 0.310677 3_1:+82474512 Msa0380650:three_prime_UTR
TTGCGGCGCGCCATCGTTCA+TGG 0.324166 3_1:+82467790 Msa0380650:CDS
TCCTTAGTAAGCACGATAAT+AGG 0.329251 3_1:-82467990 None:intergenic
CGGTGAAGTGTTTGTAGTTA+TGG 0.331589 3_1:-82467758 None:intergenic
ACACTTGAGGAACACTTTGC+TGG 0.339660 3_1:+82474497 Msa0380650:three_prime_UTR
TGGCCGCACCACTTCTTCTA+AGG 0.356825 3_1:+82467709 Msa0380650:CDS
GGATGAAGAAATTGGTTATT+GGG 0.365786 3_1:+82474520 Msa0380650:three_prime_UTR
CTTTACCACCTCTATATCAT+AGG 0.373536 3_1:+82474577 Msa0380650:three_prime_UTR
ACACCTTGAGTGTCGAAATT+GGG 0.379682 3_1:-82474144 None:intergenic
ATGTGGTCTTGAATCCATTA+TGG 0.401081 3_1:+82468203 Msa0380650:CDS
ACCTATTATCGTGCTTACTA+AGG 0.426424 3_1:+82467989 Msa0380650:CDS
CCCGTCGAGTAACTTCCGTT+TGG 0.427801 3_1:+82467902 Msa0380650:CDS
AACGTGTTGTTAACGGAGTT+AGG 0.441542 3_1:-82467861 None:intergenic
ACGGAGTTAGGTTTATCGTT+TGG 0.446191 3_1:-82467849 None:intergenic
CACTTGAGGAACACTTTGCT+GGG 0.447753 3_1:+82474498 Msa0380650:three_prime_UTR
ATGACTCTTGAGCAACATTC+TGG 0.451720 3_1:-82474726 None:intergenic
GAAAATGACCCGACATAGTA+AGG 0.456086 3_1:+82467603 Msa0380650:five_prime_UTR
GTCGAGTAACTTCCGTTTGG+AGG 0.460444 3_1:+82467905 Msa0380650:CDS
CCACACTCTGAAGATAAGAT+TGG 0.461224 3_1:+82468180 Msa0380650:CDS
GGATGGAGGGACATTAACTT+TGG 0.461982 3_1:+82468116 Msa0380650:CDS
CCGTTAACAACACGTTAAAT+CGG 0.462228 3_1:+82467868 Msa0380650:CDS
TGGTCTCTTCTCTTCAGCAT+CGG 0.470397 3_1:+82474656 Msa0380650:three_prime_UTR
AGTAGTTGATGTATGTATAG+TGG 0.470732 3_1:+82474293 Msa0380650:exon
TTGGTTATTGGGTGAGTGGT+AGG 0.479943 3_1:+82474531 Msa0380650:three_prime_UTR
GTGAATTTCCTATGATATAG+AGG 0.481745 3_1:-82474585 None:intergenic
TTGTAAGAACTGATGGTGGC+TGG 0.484149 3_1:+82474174 Msa0380650:CDS
TTCGAGAACATCTGAAGCGC+GGG 0.521920 3_1:+82474270 Msa0380650:CDS
GACACACTCCTTACTATGTC+GGG 0.526654 3_1:-82467611 None:intergenic
ATAAACCTTTCAGCATGAGC+TGG 0.527085 3_1:-82474248 None:intergenic
CAGATTCTTCATCCTCCAAA+CGG 0.535477 3_1:-82467917 None:intergenic
TGGAGGGACATTAACTTTGG+AGG 0.540847 3_1:+82468119 Msa0380650:CDS
CGGCGCTGCACCATGAACGA+TGG 0.551636 3_1:-82467800 None:intergenic
AGAGCTTGCCTTAGAAGAAG+TGG 0.555098 3_1:-82467717 None:intergenic
CACCTTGAGTGTCGAAATTG+GGG 0.557551 3_1:-82474143 None:intergenic
CGACGGTGGATTGATGGCGG+CGG 0.566544 3_1:-82467820 None:intergenic
TGAACGATGGCGCGCCGCAA+CGG 0.567387 3_1:-82467787 None:intergenic
TAAACCTTTCAGCATGAGCT+GGG 0.578041 3_1:-82474247 None:intergenic
AACTTCACTTCATACACTTG+AGG 0.581626 3_1:+82474484 Msa0380650:three_prime_UTR
TTTGTTGTAAGAACTGATGG+TGG 0.582232 3_1:+82474170 Msa0380650:CDS
CGCCGCCATCAATCCACCGT+CGG 0.583751 3_1:+82467821 Msa0380650:CDS
GCGCGCCGCAACGGTTCTGA+CGG 0.584424 3_1:-82467778 None:intergenic
GAAATTGGTTATTGGGTGAG+TGG 0.591689 3_1:+82474527 Msa0380650:three_prime_UTR
TTCCGACGGTGGATTGATGG+CGG 0.592348 3_1:-82467823 None:intergenic
CCAATCTTATCTTCAGAGTG+TGG 0.595640 3_1:-82468180 None:intergenic
ATCTGATTATCGAAAATGGA+AGG 0.596386 3_1:+82467935 Msa0380650:CDS
AGAATGTTGCTCAAGAGTCA+TGG 0.597466 3_1:+82474728 Msa0380650:three_prime_UTR
ATCCCCAATTTCGACACTCA+AGG 0.598228 3_1:+82474141 Msa0380650:CDS
CCAAACGGAAGTTACTCGAC+GGG 0.599011 3_1:-82467902 None:intergenic
TGACACACTCCTTACTATGT+CGG 0.599050 3_1:-82467612 None:intergenic
AGTGTCGAAATTGGGGATGA+CGG 0.599976 3_1:-82474136 None:intergenic
TCTGAAGATAAGATTGGATG+TGG 0.603550 3_1:+82468186 Msa0380650:CDS
AGTACCCAGCTCATGCTGAA+AGG 0.605237 3_1:+82474243 Msa0380650:CDS
GGAGGATGAGAAAGCTGTAG+TGG 0.608022 3_1:+82468137 Msa0380650:CDS
TTGTGTGCTAGGTATATGGA+TGG 0.625552 3_1:+82468099 Msa0380650:intron
ATTCGAGAACATCTGAAGCG+CGG 0.646041 3_1:+82474269 Msa0380650:CDS
TCCAAACGGAAGTTACTCGA+CGG 0.646116 3_1:-82467903 None:intergenic
ACTTGAGGAACACTTTGCTG+GGG 0.662604 3_1:+82474499 Msa0380650:three_prime_UTR
TGTGCTAGGTATATGGATGG+AGG 0.667189 3_1:+82468102 Msa0380650:intron
GTGCTAGGTATATGGATGGA+GGG 0.681449 3_1:+82468103 Msa0380650:intron
TTGCCTTAGAAGAAGTGGTG+CGG 0.691027 3_1:-82467712 None:intergenic
CTTCACCGTCAGAACCGTTG+CGG 0.698015 3_1:+82467773 Msa0380650:CDS
AATTTCCTATGATATAGAGG+TGG 0.707841 3_1:-82474582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAAACAAAAAGAAAA+AGG + chr3_1:82469147-82469166 Msa0380650:intron 10.0%
!!! TATATTAATATTCGTTTTTT+TGG + chr3_1:82469615-82469634 Msa0380650:intron 10.0%
!!! AATTTTATTACTATTTACAT+GGG + chr3_1:82472662-82472681 Msa0380650:intron 10.0%
!! AAAATATCTAAAAATTCATA+AGG - chr3_1:82473647-82473666 None:intergenic 10.0%
!!! TTTTAAGAAGAAAAAAATTT+GGG - chr3_1:82473971-82473990 None:intergenic 10.0%
!!! ATTTTAAGAAGAAAAAAATT+TGG - chr3_1:82473972-82473991 None:intergenic 10.0%
!! TAATAATTAAACACTAATTC+AGG - chr3_1:82468859-82468878 None:intergenic 15.0%
!! AGTTGTATTAATAAGATAAA+CGG + chr3_1:82468997-82469016 Msa0380650:intron 15.0%
!!! AAATACTAAAGTTTTGATTT+TGG - chr3_1:82469544-82469563 None:intergenic 15.0%
!!! AAATCAAAACTTTAGTATTT+TGG + chr3_1:82469544-82469563 Msa0380650:intron 15.0%
!! TATAAATATGACAATGATTA+CGG - chr3_1:82469801-82469820 None:intergenic 15.0%
!!! TGTTATTCTTTTTTAAACAA+GGG + chr3_1:82470735-82470754 Msa0380650:intron 15.0%
!!! CAATTTTATTACTATTTACA+TGG + chr3_1:82472661-82472680 Msa0380650:intron 15.0%
!! AGAAAATTGTATCTTTAATT+AGG + chr3_1:82473332-82473351 Msa0380650:intron 15.0%
!! ATAACAATAATCAATTGATA+AGG - chr3_1:82473903-82473922 None:intergenic 15.0%
!! TTGATTAAACTATTATTGTT+TGG + chr3_1:82474068-82474087 Msa0380650:intron 15.0%
!!! TTTTTTGTTGCGTTAATTAA+TGG - chr3_1:82467666-82467685 None:intergenic 20.0%
!!! ATTGTTTTTGTATATGCTAT+AGG + chr3_1:82468685-82468704 Msa0380650:intron 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG + chr3_1:82468707-82468726 Msa0380650:intron 20.0%
!!! GAATTAGAATTTTGAACATT+AGG + chr3_1:82469091-82469110 Msa0380650:intron 20.0%
!!! TTGGTTGAAATTTTTTTATG+AGG - chr3_1:82469525-82469544 None:intergenic 20.0%
!! AACTACATGTTAAAAACAAT+AGG - chr3_1:82469575-82469594 None:intergenic 20.0%
!!! TAGTTACTTATTTTTAGTGT+AGG + chr3_1:82469590-82469609 Msa0380650:intron 20.0%
!!! AGTTACTTATTTTTAGTGTA+GGG + chr3_1:82469591-82469610 Msa0380650:intron 20.0%
!!! TTAATATTCGTTTTTTTGGT+TGG + chr3_1:82469619-82469638 Msa0380650:intron 20.0%
!!! TAATATTCGTTTTTTTGGTT+GGG + chr3_1:82469620-82469639 Msa0380650:intron 20.0%
!! ATAAATATGACAATGATTAC+GGG - chr3_1:82469800-82469819 None:intergenic 20.0%
!! ATGATATTTGTACAACTATT+TGG + chr3_1:82470050-82470069 Msa0380650:intron 20.0%
!!! AATGAGATTTTAAATGTCTA+GGG - chr3_1:82470243-82470262 None:intergenic 20.0%
!! GAACCAGAAAAATTTATTAA+GGG - chr3_1:82470515-82470534 None:intergenic 20.0%
!!! CTGTTATTCTTTTTTAAACA+AGG + chr3_1:82470734-82470753 Msa0380650:intron 20.0%
!! AGAATCAAACATTAAATCAT+TGG - chr3_1:82471399-82471418 None:intergenic 20.0%
!! TTGAATTAAAACAAGGTATA+TGG - chr3_1:82471743-82471762 None:intergenic 20.0%
!!! GTTTAAGTTGAATTAAAACA+AGG - chr3_1:82471750-82471769 None:intergenic 20.0%
!! ATCATATGCAAAAAATCATA+CGG + chr3_1:82471846-82471865 Msa0380650:intron 20.0%
!! AAAAACTTTCTTATAACTAC+AGG - chr3_1:82471958-82471977 None:intergenic 20.0%
!!! AGTTATAAGAAAGTTTTTAG+TGG + chr3_1:82471960-82471979 Msa0380650:intron 20.0%
!!! TTATTGATAGTAAAACGATA+GGG - chr3_1:82472921-82472940 None:intergenic 20.0%
!!! TTTATTGATAGTAAAACGAT+AGG - chr3_1:82472922-82472941 None:intergenic 20.0%
!! TTACTATCAATAAAACTACA+AGG + chr3_1:82472928-82472947 Msa0380650:intron 20.0%
!! ATCTATTGTAGTAAATAAGA+TGG - chr3_1:82473164-82473183 None:intergenic 20.0%
!! TTATATGGAACAATATTAGT+TGG - chr3_1:82473251-82473270 None:intergenic 20.0%
!! TCTAAAGAGTAAAGATTATA+TGG - chr3_1:82473266-82473285 None:intergenic 20.0%
!!! TTATTTTGAGTAGATAAACA+AGG - chr3_1:82473364-82473383 None:intergenic 20.0%
!! TTATCTACTCAAAATAATGT+TGG + chr3_1:82473367-82473386 Msa0380650:intron 20.0%
!! TAGTTTAATCAATGATCTTA+AGG - chr3_1:82474060-82474079 None:intergenic 20.0%
!!! CAACATTTTAAAATGTTTTG+TGG + chr3_1:82474636-82474655 Msa0380650:three_prime_UTR 20.0%
!!! ATTTAGATTTTTTTTGGGGT+TGG - chr3_1:82467690-82467709 None:intergenic 25.0%
! AACCCCAAAAAAAATCTAAA+TGG + chr3_1:82467689-82467708 Msa0380650:exon 25.0%
! AAGAATCTGATTATCGAAAA+TGG + chr3_1:82467931-82467950 Msa0380650:CDS 25.0%
!!! TGAATTTAATTTTGTGTGCT+AGG + chr3_1:82468088-82468107 Msa0380650:intron 25.0%
!! TTATTTTCATAAGTTCTGCA+TGG - chr3_1:82468305-82468324 None:intergenic 25.0%
! AATAAACTGAAAACAGCTTA+TGG + chr3_1:82468320-82468339 Msa0380650:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr3_1:82468579-82468598 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr3_1:82468580-82468599 None:intergenic 25.0%
! TAATTAAACACTAATTCAGG+AGG - chr3_1:82468856-82468875 None:intergenic 25.0%
! CTTATTAATACAACTAAAGC+TGG - chr3_1:82468992-82469011 None:intergenic 25.0%
! CAAGAATACTACATCTTAAA+CGG + chr3_1:82469049-82469068 Msa0380650:intron 25.0%
! TCTGCATAAAAATAAAACCA+TGG + chr3_1:82469228-82469247 Msa0380650:intron 25.0%
!!! TGAAATTTTTTTATGAGGCA+AGG - chr3_1:82469520-82469539 None:intergenic 25.0%
!!! ATAAGCTTTATTAGCAAACA+AGG + chr3_1:82469703-82469722 Msa0380650:intron 25.0%
! TGAAATTCAATCAACAAGAT+GGG - chr3_1:82469929-82469948 None:intergenic 25.0%
! ATGAAATTCAATCAACAAGA+TGG - chr3_1:82469930-82469949 None:intergenic 25.0%
!! AAATGAAACCATTTTGGATT+GGG - chr3_1:82470024-82470043 None:intergenic 25.0%
!! TAAATGAAACCATTTTGGAT+TGG - chr3_1:82470025-82470044 None:intergenic 25.0%
!! TACTCTAAATGAAACCATTT+TGG - chr3_1:82470030-82470049 None:intergenic 25.0%
! AATAAGAAGAGAGAAACAAT+AGG - chr3_1:82470082-82470101 None:intergenic 25.0%
!! TATTGTTTCTCTCTTCTTAT+TGG + chr3_1:82470081-82470100 Msa0380650:intron 25.0%
!! GAATGAGATTTTAAATGTCT+AGG - chr3_1:82470244-82470263 None:intergenic 25.0%
! TGAAAACATAAACTTGTGTT+GGG - chr3_1:82470453-82470472 None:intergenic 25.0%
! TTGAAAACATAAACTTGTGT+TGG - chr3_1:82470454-82470473 None:intergenic 25.0%
! GGAACCAGAAAAATTTATTA+AGG - chr3_1:82470516-82470535 None:intergenic 25.0%
! TTTACACACTCTATTCTATA+AGG - chr3_1:82470803-82470822 None:intergenic 25.0%
! ATCTGAGAAAAGAAGAAAAT+AGG + chr3_1:82470922-82470941 Msa0380650:intron 25.0%
! ATACAGGGGATAAAATATAT+TGG + chr3_1:82471069-82471088 Msa0380650:intron 25.0%
! TGTATAAGTTGCATACAAAT+GGG - chr3_1:82471291-82471310 None:intergenic 25.0%
!!! CTATTGCAATACTTTTTTGT+TGG + chr3_1:82471438-82471457 Msa0380650:intron 25.0%
! GCTATAATACTAGCAATATT+GGG - chr3_1:82471487-82471506 None:intergenic 25.0%
! AGCTATAATACTAGCAATAT+TGG - chr3_1:82471488-82471507 None:intergenic 25.0%
!! ATACAGTATAATCTTCCTTT+TGG + chr3_1:82471508-82471527 Msa0380650:intron 25.0%
! ATATGGAGTATAAGTTAAGT+AGG - chr3_1:82471726-82471745 None:intergenic 25.0%
!!! ATGATTTTTTGCATATGATG+TGG - chr3_1:82471845-82471864 None:intergenic 25.0%
! AGAACTAAGGTAAGAAAATA+AGG + chr3_1:82471907-82471926 Msa0380650:intron 25.0%
! GAACTAAGGTAAGAAAATAA+GGG + chr3_1:82471908-82471927 Msa0380650:intron 25.0%
! AATTCAAGAATTAAGGGATA+AGG - chr3_1:82472116-82472135 None:intergenic 25.0%
! CCAACAAATTCAAGAATTAA+GGG - chr3_1:82472122-82472141 None:intergenic 25.0%
!!! TTAATTCTTGAATTTGTTGG+CGG + chr3_1:82472122-82472141 Msa0380650:intron 25.0%
! ACATCAATTTGCATTTGAAT+AGG - chr3_1:82472183-82472202 None:intergenic 25.0%
!!! TGTTTAGTTGTTTTTCTGTT+AGG + chr3_1:82472393-82472412 Msa0380650:intron 25.0%
!!! ATTTATTGACTTCCTTTCAA+AGG - chr3_1:82472434-82472453 None:intergenic 25.0%
! TGAAAGGAAGTCAATAAATA+AGG + chr3_1:82472435-82472454 Msa0380650:intron 25.0%
! GAAATAATTGTCAGATTCAT+GGG + chr3_1:82472602-82472621 Msa0380650:intron 25.0%
!! TTTCTTTGGGAATAAAATCA+TGG + chr3_1:82472705-82472724 Msa0380650:intron 25.0%
!! TTCTTTGGGAATAAAATCAT+GGG + chr3_1:82472706-82472725 Msa0380650:intron 25.0%
!!! TTTAACTTGGTAACAAACAT+AGG + chr3_1:82472782-82472801 Msa0380650:intron 25.0%
! TGGTTTAAAAAATTATTCCC+AGG - chr3_1:82472833-82472852 None:intergenic 25.0%
!!! TGGGAATAATTTTTTAAACC+AGG + chr3_1:82472832-82472851 Msa0380650:intron 25.0%
! AAAGTAGTGACAATAGAAAA+AGG - chr3_1:82472966-82472985 None:intergenic 25.0%
! ATTCTTAATGGTTAAACCTA+AGG + chr3_1:82472998-82473017 Msa0380650:intron 25.0%
!! TCATGTGATTTGTGAATTTA+TGG - chr3_1:82473103-82473122 None:intergenic 25.0%
! GACTTTATTAGTACATCAAT+TGG - chr3_1:82473312-82473331 None:intergenic 25.0%
!!! CTCTTTTTCAATGATGATTT+TGG - chr3_1:82473560-82473579 None:intergenic 25.0%
! ATGTTGATATTCAGAATAGT+GGG - chr3_1:82473815-82473834 None:intergenic 25.0%
! AATGTTGATATTCAGAATAG+TGG - chr3_1:82473816-82473835 None:intergenic 25.0%
! AATAATCAATTGATAAGGAG+GGG - chr3_1:82473898-82473917 None:intergenic 25.0%
! CAATAATCAATTGATAAGGA+GGG - chr3_1:82473899-82473918 None:intergenic 25.0%
! ACAATAATCAATTGATAAGG+AGG - chr3_1:82473900-82473919 None:intergenic 25.0%
! AAAAACTACCACAAGATTAA+AGG - chr3_1:82473931-82473950 None:intergenic 25.0%
!! TTTAATCTTGTGGTAGTTTT+TGG + chr3_1:82473930-82473949 Msa0380650:intron 25.0%
! TGATGTAAATTTCAACGAAA+TGG - chr3_1:82474032-82474051 None:intergenic 25.0%
!! TCTTTTTAATGTATTCTCGA+AGG - chr3_1:82474223-82474242 None:intergenic 25.0%
! AAATGTTGCAAGAATGAAAA+AGG - chr3_1:82474624-82474643 None:intergenic 25.0%
!!! GGCCATTTAGATTTTTTTTG+GGG - chr3_1:82467694-82467713 None:intergenic 30.0%
!!! CGGCCATTTAGATTTTTTTT+GGG - chr3_1:82467695-82467714 None:intergenic 30.0%
ATCTGATTATCGAAAATGGA+AGG + chr3_1:82467935-82467954 Msa0380650:CDS 30.0%
! AATTTTGTGTGCTAGGTATA+TGG + chr3_1:82468095-82468114 Msa0380650:intron 30.0%
! CTCTCAAATAGTCTTACATA+TGG + chr3_1:82468370-82468389 Msa0380650:intron 30.0%
! CTTAGTTTGAGTATATCTAC+TGG - chr3_1:82468401-82468420 None:intergenic 30.0%
AGTCAATTCAAACAGATACT+TGG + chr3_1:82468552-82468571 Msa0380650:intron 30.0%
GTCAATTCAAACAGATACTT+GGG + chr3_1:82468553-82468572 Msa0380650:intron 30.0%
! GCTTATAAGCACTTTTGTAT+AGG + chr3_1:82468619-82468638 Msa0380650:intron 30.0%
TGGCTTATTTGTTTATCTAC+TGG - chr3_1:82468808-82468827 None:intergenic 30.0%
! AAGTAGATTAAGAGCTTGTT+TGG - chr3_1:82468833-82468852 None:intergenic 30.0%
! AGTCTGTGCATAATAGTTTT+CGG + chr3_1:82469190-82469209 Msa0380650:intron 30.0%
TTTGGTTGGGACAAAAAATT+TGG + chr3_1:82469633-82469652 Msa0380650:intron 30.0%
AAACTAGGTGTACGAATTTA+GGG + chr3_1:82469846-82469865 Msa0380650:intron 30.0%
GAAATTCAATCAACAAGATG+GGG - chr3_1:82469928-82469947 None:intergenic 30.0%
! AATGAAACCATTTTGGATTG+GGG - chr3_1:82470023-82470042 None:intergenic 30.0%
AAAACAACAAAGAGAGAGAA+AGG + chr3_1:82470107-82470126 Msa0380650:intron 30.0%
CTAGGAAATATGTATGAAAG+TGG - chr3_1:82470272-82470291 None:intergenic 30.0%
CTTTCATACATATTTCCTAG+AGG + chr3_1:82470272-82470291 Msa0380650:intron 30.0%
CAATTGCTGTACATCAAATT+TGG + chr3_1:82470311-82470330 Msa0380650:intron 30.0%
CGAAAATTTAACACATGTGT+GGG - chr3_1:82470489-82470508 None:intergenic 30.0%
CCAGAAAAATTTATTAAGGG+TGG - chr3_1:82470512-82470531 None:intergenic 30.0%
! CCACCCTTAATAAATTTTTC+TGG + chr3_1:82470509-82470528 Msa0380650:intron 30.0%
!!! TCTTTTTTAAACAAGGGCAA+TGG + chr3_1:82470741-82470760 Msa0380650:intron 30.0%
!! ATGGCAGTATTGATCATTAT+TGG + chr3_1:82470760-82470779 Msa0380650:intron 30.0%
! TTGATCATTATTGGTTGAGT+TGG + chr3_1:82470769-82470788 Msa0380650:intron 30.0%
ATAGAATAGAGTGTGTAAAG+AGG + chr3_1:82470804-82470823 Msa0380650:intron 30.0%
TAGAATAGAGTGTGTAAAGA+GGG + chr3_1:82470805-82470824 Msa0380650:intron 30.0%
TTTGGTGGAAGCTAATTTAT+AGG - chr3_1:82471111-82471130 None:intergenic 30.0%
!! AAATTTTCTTTTGGGTGCTT+TGG - chr3_1:82471129-82471148 None:intergenic 30.0%
TATAAAATGTTCAAGCCTTC+AGG + chr3_1:82471150-82471169 Msa0380650:intron 30.0%
ATAAAATGTTCAAGCCTTCA+GGG + chr3_1:82471151-82471170 Msa0380650:intron 30.0%
TACAAATGGGAATAATACCA+TGG - chr3_1:82471278-82471297 None:intergenic 30.0%
GTGTATAAGTTGCATACAAA+TGG - chr3_1:82471292-82471311 None:intergenic 30.0%
TTGTATGCAACTTATACACA+AGG + chr3_1:82471293-82471312 Msa0380650:intron 30.0%
TGTATGCAACTTATACACAA+GGG + chr3_1:82471294-82471313 Msa0380650:intron 30.0%
! TCTGGTTCCAAAATAATGAT+CGG - chr3_1:82471337-82471356 None:intergenic 30.0%
! ACATACTAGCCATTATTTCT+TGG + chr3_1:82471360-82471379 Msa0380650:intron 30.0%
AAAGGACATCCAAGAAATAA+TGG - chr3_1:82471372-82471391 None:intergenic 30.0%
CATTAAATCATTGGAGAGAA+AGG - chr3_1:82471390-82471409 None:intergenic 30.0%
TATTGGGAATGAATATTGGA+TGG - chr3_1:82471471-82471490 None:intergenic 30.0%
GCAATATTGGGAATGAATAT+TGG - chr3_1:82471475-82471494 None:intergenic 30.0%
AAGCGAGGTTAATTAAATAG+AGG - chr3_1:82471576-82471595 None:intergenic 30.0%
ATAAAGTGAGATATCAACCA+TGG - chr3_1:82471603-82471622 None:intergenic 30.0%
! TGATTTTATATGATGAACCC+TGG + chr3_1:82471631-82471650 Msa0380650:intron 30.0%
! AAAATAGAGATCTAGAGTAG+TGG - chr3_1:82471801-82471820 None:intergenic 30.0%
!! TTAGTTCTAGATGTGATTAC+TGG - chr3_1:82471895-82471914 None:intergenic 30.0%
! AGTAATCACATCTAGAACTA+AGG + chr3_1:82471894-82471913 Msa0380650:intron 30.0%
GATAAGGAACATTGAATTGA+TGG - chr3_1:82472100-82472119 None:intergenic 30.0%
CCCTTAATTCTTGAATTTGT+TGG + chr3_1:82472119-82472138 Msa0380650:intron 30.0%
GCCAACAAATTCAAGAATTA+AGG - chr3_1:82472123-82472142 None:intergenic 30.0%
!! TAATTCTTGAATTTGTTGGC+GGG + chr3_1:82472123-82472142 Msa0380650:intron 30.0%
TAGGTTCAATAATAGAGACA+TGG - chr3_1:82472164-82472183 None:intergenic 30.0%
! ATAAAAAGTCTTGTCCCATT+AGG + chr3_1:82472221-82472240 Msa0380650:intron 30.0%
! TTATTTTCCTGCATGATCTA+TGG - chr3_1:82472288-82472307 None:intergenic 30.0%
ATGTCAAAGATCCTTTCAAA+GGG - chr3_1:82472470-82472489 None:intergenic 30.0%
AATGTCAAAGATCCTTTCAA+AGG - chr3_1:82472471-82472490 None:intergenic 30.0%
! AGGATCTTTGACATTTTCTT+AGG + chr3_1:82472476-82472495 Msa0380650:intron 30.0%
! GGATCTTTGACATTTTCTTA+GGG + chr3_1:82472477-82472496 Msa0380650:intron 30.0%
! GATCTTTGACATTTTCTTAG+GGG + chr3_1:82472478-82472497 Msa0380650:intron 30.0%
! ATCTTTGACATTTTCTTAGG+GGG + chr3_1:82472479-82472498 Msa0380650:intron 30.0%
ACGGTTTAAATTTCATTCCT+AGG + chr3_1:82472512-82472531 Msa0380650:intron 30.0%
AACAATGGACATCTTATTCT+TGG + chr3_1:82472555-82472574 Msa0380650:intron 30.0%
ACAATGGACATCTTATTCTT+GGG + chr3_1:82472556-82472575 Msa0380650:intron 30.0%
! GATTTTATTCCCAAAGAAAG+TGG - chr3_1:82472704-82472723 None:intergenic 30.0%
AAGTTAAAAAAACAACTCCC+GGG - chr3_1:82472770-82472789 None:intergenic 30.0%
CAAGTTAAAAAAACAACTCC+CGG - chr3_1:82472771-82472790 None:intergenic 30.0%
TAGAACTCTGACATTCTTAA+TGG + chr3_1:82472986-82473005 Msa0380650:intron 30.0%
GTTGGACTTATTTATACTTC+AGG + chr3_1:82473385-82473404 Msa0380650:intron 30.0%
TGTCAATATCAATGTGACAA+GGG - chr3_1:82473484-82473503 None:intergenic 30.0%
TGATTATCATGTCAAGTGTA+GGG + chr3_1:82473604-82473623 Msa0380650:intron 30.0%
TTCATCAAATGAATTGTGAC+CGG - chr3_1:82473717-82473736 None:intergenic 30.0%
GAAATCATGTTTACGCTAAT+TGG + chr3_1:82473734-82473753 Msa0380650:intron 30.0%
! ATATTCAGAATAGTGGGATT+CGG - chr3_1:82473809-82473828 None:intergenic 30.0%
TATTGTTGCCTTTAATCTTG+TGG + chr3_1:82473920-82473939 Msa0380650:intron 30.0%
!! CTTTTTGTTGTAAGAACTGA+TGG + chr3_1:82474167-82474186 Msa0380650:CDS 30.0%
! AGTAGTTGATGTATGTATAG+TGG + chr3_1:82474293-82474312 Msa0380650:exon 30.0%
!!! AACATCAAGCTTGTTTTGAA+GGG + chr3_1:82474439-82474458 Msa0380650:three_prime_UTR 30.0%
GGATGAAGAAATTGGTTATT+GGG + chr3_1:82474520-82474539 Msa0380650:three_prime_UTR 30.0%
AATTTCCTATGATATAGAGG+TGG - chr3_1:82474585-82474604 None:intergenic 30.0%
GTGAATTTCCTATGATATAG+AGG - chr3_1:82474588-82474607 None:intergenic 30.0%
!!! GCGGCCATTTAGATTTTTTT+TGG - chr3_1:82467696-82467715 None:intergenic 35.0%
!!! TTATCGTTTGGTTTTTCCGA+CGG - chr3_1:82467840-82467859 None:intergenic 35.0%
! CCGATTTAACGTGTTGTTAA+CGG - chr3_1:82467871-82467890 None:intergenic 35.0%
CCGTTAACAACACGTTAAAT+CGG + chr3_1:82467868-82467887 Msa0380650:CDS 35.0%
ACCTATTATCGTGCTTACTA+AGG + chr3_1:82467989-82468008 Msa0380650:CDS 35.0%
TCCTTAGTAAGCACGATAAT+AGG - chr3_1:82467993-82468012 None:intergenic 35.0%
TCTGAAGATAAGATTGGATG+TGG + chr3_1:82468186-82468205 Msa0380650:CDS 35.0%
! ATGTGGTCTTGAATCCATTA+TGG + chr3_1:82468203-82468222 Msa0380650:CDS 35.0%
GCTATAAGTGCTTACCATAA+TGG - chr3_1:82468220-82468239 None:intergenic 35.0%
TTATAAGCGCTTGTGCTATA+AGG - chr3_1:82468607-82468626 None:intergenic 35.0%
GCTCACATAAGCTATTTGTA+TGG + chr3_1:82468641-82468660 Msa0380650:intron 35.0%
!! CAAGTTTTGTGAGACTGTTT+CGG - chr3_1:82468785-82468804 None:intergenic 35.0%
! GATTAAGAGCTTGTTTGGAT+TGG - chr3_1:82468828-82468847 None:intergenic 35.0%
! CAAGTTAAGCCAAACCTTTT+CGG - chr3_1:82469353-82469372 None:intergenic 35.0%
ATCAAGTATCCTCGAATTAG+AGG + chr3_1:82469377-82469396 Msa0380650:intron 35.0%
AACTGAAAACCTCTAATTCG+AGG - chr3_1:82469389-82469408 None:intergenic 35.0%
TACTCTGAACATAGAGTAGA+AGG + chr3_1:82469490-82469509 Msa0380650:intron 35.0%
GTTGGGACAAAAAATTTGGT+GGG + chr3_1:82469637-82469656 Msa0380650:intron 35.0%
! TTGGGACAAAAAATTTGGTG+GGG + chr3_1:82469638-82469657 Msa0380650:intron 35.0%
TAGGTTGCTGAAAAAATCAC+TGG + chr3_1:82469670-82469689 Msa0380650:intron 35.0%
!! AGCTTTATTAGCAAACAAGG+TGG + chr3_1:82469706-82469725 Msa0380650:intron 35.0%
! GCTTTATTAGCAAACAAGGT+GGG + chr3_1:82469707-82469726 Msa0380650:intron 35.0%
! GGTGGGTAAACTAATTTTCA+AGG + chr3_1:82469724-82469743 Msa0380650:intron 35.0%
! TAATTTGTCATGACGTATGC+TGG + chr3_1:82469755-82469774 Msa0380650:intron 35.0%
GAAACTAGGTGTACGAATTT+AGG + chr3_1:82469845-82469864 Msa0380650:intron 35.0%
AACTAGGTGTACGAATTTAG+GGG + chr3_1:82469847-82469866 Msa0380650:intron 35.0%
AAAATGTCATGACTGTGTAC+CGG + chr3_1:82469890-82469909 Msa0380650:intron 35.0%
! TTTAAATGTCTAGGGTGATG+TGG - chr3_1:82470235-82470254 None:intergenic 35.0%
TGCAAGAATTAATCTCCTCT+AGG - chr3_1:82470290-82470309 None:intergenic 35.0%
GCGAAAATTTAACACATGTG+TGG - chr3_1:82470490-82470509 None:intergenic 35.0%
! TATATCTTGAGCATTGCAAC+CGG - chr3_1:82470563-82470582 None:intergenic 35.0%
TTATCATATGTTGAAGTCCC+TGG - chr3_1:82470620-82470639 None:intergenic 35.0%
!! TCATTATTGGTTGAGTTGGT+TGG + chr3_1:82470773-82470792 Msa0380650:intron 35.0%
!! CATTATTGGTTGAGTTGGTT+GGG + chr3_1:82470774-82470793 Msa0380650:intron 35.0%
!! ATTATTGGTTGAGTTGGTTG+GGG + chr3_1:82470775-82470794 Msa0380650:intron 35.0%
! TATTTTATCCCCTGTATGCA+GGG - chr3_1:82471066-82471085 None:intergenic 35.0%
! ATATTTTATCCCCTGTATGC+AGG - chr3_1:82471067-82471086 None:intergenic 35.0%
AGAGATTGAAATAGCTAGAG+AGG + chr3_1:82471188-82471207 Msa0380650:intron 35.0%
TGAAATAGCTAGAGAGGTTA+TGG + chr3_1:82471194-82471213 Msa0380650:intron 35.0%
AGAGGTTATGGAAGAAGATA+AGG + chr3_1:82471206-82471225 Msa0380650:intron 35.0%
TTCCTAAGAAGAGAAATCCA+TGG + chr3_1:82471258-82471277 Msa0380650:intron 35.0%
TACCATGGATTTCTCTTCTT+AGG - chr3_1:82471263-82471282 None:intergenic 35.0%
! TGAACCTCCGATCATTATTT+TGG + chr3_1:82471327-82471346 Msa0380650:intron 35.0%
TAATGGCTAGTATGTTTCTC+TGG - chr3_1:82471355-82471374 None:intergenic 35.0%
TATCATATCACAACTCTCAC+TGG - chr3_1:82471665-82471684 None:intergenic 35.0%
ATGGCTAATAGCAAAGAAGT+TGG - chr3_1:82472081-82472100 None:intergenic 35.0%
AAAGCTGCAAACAAACACTT+AGG - chr3_1:82472317-82472336 None:intergenic 35.0%
AAAGATCCTTTCAAAGGGAA+AGG - chr3_1:82472465-82472484 None:intergenic 35.0%
ATGGGAATTGTTTGTGATAG+TGG + chr3_1:82472620-82472639 Msa0380650:intron 35.0%
TGGGAATTGTTTGTGATAGT+GGG + chr3_1:82472621-82472640 Msa0380650:intron 35.0%
!! GTTTGTGATAGTGGGTATAT+AGG + chr3_1:82472629-82472648 Msa0380650:intron 35.0%
GGAATAAAATCATGGGTAAG+TGG + chr3_1:82472713-82472732 Msa0380650:intron 35.0%
!!! GTGGAAGCTATTTTTTTCCT+AGG + chr3_1:82472732-82472751 Msa0380650:intron 35.0%
!!! CGGGAGTTGTTTTTTTAACT+TGG + chr3_1:82472769-82472788 Msa0380650:intron 35.0%
AAAAATTATTCCCAGGAACG+TGG - chr3_1:82472826-82472845 None:intergenic 35.0%
TTTATGACAGTCAACTAAGG+GGG - chr3_1:82472867-82472886 None:intergenic 35.0%
GTTTATGACAGTCAACTAAG+GGG - chr3_1:82472868-82472887 None:intergenic 35.0%
GGTTTATGACAGTCAACTAA+GGG - chr3_1:82472869-82472888 None:intergenic 35.0%
CTTAGTTGACTGTCATAAAC+CGG + chr3_1:82472868-82472887 Msa0380650:intron 35.0%
AGAAGATCACGAAAAACCTT+AGG - chr3_1:82473017-82473036 None:intergenic 35.0%
! TCGTGATCTTCTTTTACTTC+TGG + chr3_1:82473025-82473044 Msa0380650:intron 35.0%
! CGTGATCTTCTTTTACTTCT+GGG + chr3_1:82473026-82473045 Msa0380650:intron 35.0%
GAGTGAAAACTACAATAGAG+AGG - chr3_1:82473202-82473221 None:intergenic 35.0%
ATCAGTTTGTGATTATGCTG+GGG - chr3_1:82473428-82473447 None:intergenic 35.0%
CATCAGTTTGTGATTATGCT+GGG - chr3_1:82473429-82473448 None:intergenic 35.0%
ACATCAGTTTGTGATTATGC+TGG - chr3_1:82473430-82473449 None:intergenic 35.0%
GTCAATATCAATGTGACAAG+GGG - chr3_1:82473483-82473502 None:intergenic 35.0%
GTGTCAATATCAATGTGACA+AGG - chr3_1:82473485-82473504 None:intergenic 35.0%
TGTCACATTGATATTGACAC+AGG + chr3_1:82473485-82473504 Msa0380650:intron 35.0%
CTGATTATCATGTCAAGTGT+AGG + chr3_1:82473603-82473622 Msa0380650:intron 35.0%
CTAATAACTTATGCCTTCGT+TGG + chr3_1:82473686-82473705 Msa0380650:intron 35.0%
TCATCAAATGAATTGTGACC+GGG - chr3_1:82473716-82473735 None:intergenic 35.0%
! TATTCAGAATAGTGGGATTC+GGG - chr3_1:82473808-82473827 None:intergenic 35.0%
!! ATGCGACTTATTTTTCTTGC+AGG + chr3_1:82474109-82474128 Msa0380650:intron 35.0%
! TTTGTTGTAAGAACTGATGG+TGG + chr3_1:82474170-82474189 Msa0380650:CDS 35.0%
!!! CAACATCAAGCTTGTTTTGA+AGG + chr3_1:82474438-82474457 Msa0380650:three_prime_UTR 35.0%
AACTTCACTTCATACACTTG+AGG + chr3_1:82474484-82474503 Msa0380650:three_prime_UTR 35.0%
GGGATGAAGAAATTGGTTAT+TGG + chr3_1:82474519-82474538 Msa0380650:three_prime_UTR 35.0%
CTTTACCACCTCTATATCAT+AGG + chr3_1:82474577-82474596 Msa0380650:three_prime_UTR 35.0%
!!! GCATCGGTTTTTTAACTACT+TGG + chr3_1:82474672-82474691 Msa0380650:three_prime_UTR 35.0%
GAAAATGACCCGACATAGTA+AGG + chr3_1:82467603-82467622 Msa0380650:five_prime_UTR 40.0%
TGACACACTCCTTACTATGT+CGG - chr3_1:82467615-82467634 None:intergenic 40.0%
! CGGTGAAGTGTTTGTAGTTA+TGG - chr3_1:82467761-82467780 None:intergenic 40.0%
ACGGAGTTAGGTTTATCGTT+TGG - chr3_1:82467852-82467871 None:intergenic 40.0%
! AACGTGTTGTTAACGGAGTT+AGG - chr3_1:82467864-82467883 None:intergenic 40.0%
CAGATTCTTCATCCTCCAAA+CGG - chr3_1:82467920-82467939 None:intergenic 40.0%
TTGTGTGCTAGGTATATGGA+TGG + chr3_1:82468099-82468118 Msa0380650:intron 40.0%
CCAATCTTATCTTCAGAGTG+TGG - chr3_1:82468183-82468202 None:intergenic 40.0%
! CCACACTCTGAAGATAAGAT+TGG + chr3_1:82468180-82468199 Msa0380650:CDS 40.0%
! CAAACTAAGAAGCTCTGACA+CGG + chr3_1:82468412-82468431 Msa0380650:intron 40.0%
TATGAAGCACAGATACTCCT+CGG - chr3_1:82468524-82468543 None:intergenic 40.0%
CTCTGTATATGTGTCATGTG+TGG + chr3_1:82469120-82469139 Msa0380650:intron 40.0%
GGTCATGGTTGAAATAACCA+TGG - chr3_1:82469248-82469267 None:intergenic 40.0%
TATTTCAACCATGACCAGAC+AGG + chr3_1:82469252-82469271 Msa0380650:intron 40.0%
! GCTTTAGGCAAACAAGGTTA+AGG - chr3_1:82469321-82469340 None:intergenic 40.0%
TTTCGGAATTTGGCAGCTTT+AGG - chr3_1:82469336-82469355 None:intergenic 40.0%
AAAGCTGCCAAATTCCGAAA+AGG + chr3_1:82469336-82469355 Msa0380650:intron 40.0%
TGCCAAATTCCGAAAAGGTT+TGG + chr3_1:82469341-82469360 Msa0380650:intron 40.0%
! AGCCAAACCTTTTCGGAATT+TGG - chr3_1:82469346-82469365 None:intergenic 40.0%
TTTCAGTTCATCCCTATCAG+TGG + chr3_1:82469401-82469420 Msa0380650:intron 40.0%
TCCATAGAAGACCACTGATA+GGG - chr3_1:82469415-82469434 None:intergenic 40.0%
TTCCATAGAAGACCACTGAT+AGG - chr3_1:82469416-82469435 None:intergenic 40.0%
ATCAGTGGTCTTCTATGGAA+AGG + chr3_1:82469416-82469435 Msa0380650:intron 40.0%
TATGCTACAGGACATAGTGA+AGG - chr3_1:82469472-82469491 None:intergenic 40.0%
CTATGTTCAGAGTATGCTAC+AGG - chr3_1:82469484-82469503 None:intergenic 40.0%
GGTTGGGACAAAAAATTTGG+TGG + chr3_1:82469636-82469655 Msa0380650:intron 40.0%
! TGGGACAAAAAATTTGGTGG+GGG + chr3_1:82469639-82469658 Msa0380650:intron 40.0%
TTTGGTGGGGGTGATAAAAT+AGG + chr3_1:82469651-82469670 Msa0380650:intron 40.0%
!! TATCATATTAGCTCTGACCC+AGG + chr3_1:82469819-82469838 Msa0380650:intron 40.0%
!! ATCATATTAGCTCTGACCCA+GGG + chr3_1:82469820-82469839 Msa0380650:intron 40.0%
! TCATGACATTTTGGACCTTG+GGG - chr3_1:82469882-82469901 None:intergenic 40.0%
! GTCATGACATTTTGGACCTT+GGG - chr3_1:82469883-82469902 None:intergenic 40.0%
! AGTCATGACATTTTGGACCT+TGG - chr3_1:82469884-82469903 None:intergenic 40.0%
! GGTACACAGTCATGACATTT+TGG - chr3_1:82469891-82469910 None:intergenic 40.0%
! ATATCTTGAGCATTGCAACC+GGG - chr3_1:82470562-82470581 None:intergenic 40.0%
TGAAAACTACACAACAAGCC+AGG + chr3_1:82470599-82470618 Msa0380650:intron 40.0%
GAAAACTACACAACAAGCCA+GGG + chr3_1:82470600-82470619 Msa0380650:intron 40.0%
TAGAGTGTGTAAAGAGGGAA+AGG + chr3_1:82470810-82470829 Msa0380650:intron 40.0%
TGTAAAGAGGGAAAGGTCAA+AGG + chr3_1:82470817-82470836 Msa0380650:intron 40.0%
GTAAAGAGGGAAAGGTCAAA+GGG + chr3_1:82470818-82470837 Msa0380650:intron 40.0%
!! ATGCTCTGAAGCATCATCAT+TGG + chr3_1:82470858-82470877 Msa0380650:intron 40.0%
! TCTGAAGCATCATCATTGGT+GGG + chr3_1:82470862-82470881 Msa0380650:intron 40.0%
!! TTTTCTTTTGGGTGCTTTGG+TGG - chr3_1:82471126-82471145 None:intergenic 40.0%
CAAGCATATCATATCCCTGA+AGG - chr3_1:82471168-82471187 None:intergenic 40.0%
CTTAGGAAGACGTAAGTCTT+AGG - chr3_1:82471246-82471265 None:intergenic 40.0%
GGTTCCAAAATAATGATCGG+AGG - chr3_1:82471334-82471353 None:intergenic 40.0%
!!! AATCTTCCTTTTGGTTCGAG+TGG + chr3_1:82471517-82471536 Msa0380650:intron 40.0%
! AAAGTACCACTCGAACCAAA+AGG - chr3_1:82471526-82471545 None:intergenic 40.0%
ATTAACCTCGCTTGAATCCA+TGG + chr3_1:82471583-82471602 Msa0380650:intron 40.0%
! AGATCTAGAGTAGTGGAGAA+AGG - chr3_1:82471794-82471813 None:intergenic 40.0%
GCATATGATGTGGTCATAGT+TGG - chr3_1:82471835-82471854 None:intergenic 40.0%
AATCATACGGTGTGACAAGT+TGG + chr3_1:82471859-82471878 Msa0380650:intron 40.0%
TAACTACAGGACTAAAGCAG+AGG - chr3_1:82471945-82471964 None:intergenic 40.0%
ACGACAAGCATGAAAACACA+AGG - chr3_1:82471986-82472005 None:intergenic 40.0%
AGGTATGAGATGACTCAAAG+AGG - chr3_1:82472028-82472047 None:intergenic 40.0%
AGTTGGACCAAAGATATGCA+TGG - chr3_1:82472064-82472083 None:intergenic 40.0%
! AAAAGTCTTGTCCCATTAGG+TGG + chr3_1:82472224-82472243 Msa0380650:intron 40.0%
! AAAGTCTTGTCCCATTAGGT+GGG + chr3_1:82472225-82472244 Msa0380650:intron 40.0%
TGATCTATGGTAGGACATCA+AGG - chr3_1:82472275-82472294 None:intergenic 40.0%
TTTCCTGCATGATCTATGGT+AGG - chr3_1:82472284-82472303 None:intergenic 40.0%
GGAATTCCTTTCCCTTTGAA+AGG + chr3_1:82472456-82472475 Msa0380650:intron 40.0%
TTCCTAGGAATAACCTTTCC+TGG + chr3_1:82472527-82472546 Msa0380650:intron 40.0%
TCCTAGGAATAACCTTTCCT+GGG + chr3_1:82472528-82472547 Msa0380650:intron 40.0%
!! CCATTGTTATTTCCCAGGAA+AGG - chr3_1:82472543-82472562 None:intergenic 40.0%
CCTTTCCTGGGAAATAACAA+TGG + chr3_1:82472540-82472559 Msa0380650:intron 40.0%
!! GATGTCCATTGTTATTTCCC+AGG - chr3_1:82472548-82472567 None:intergenic 40.0%
! TTATTCCCAGCCACTTTCTT+TGG + chr3_1:82472691-82472710 Msa0380650:intron 40.0%
! TATTCCCAGCCACTTTCTTT+GGG + chr3_1:82472692-82472711 Msa0380650:intron 40.0%
TATTCCCAAAGAAAGTGGCT+GGG - chr3_1:82472699-82472718 None:intergenic 40.0%
TTATTCCCAAAGAAAGTGGC+TGG - chr3_1:82472700-82472719 None:intergenic 40.0%
! CCTAGGAATCCTTTATTTCC+CGG + chr3_1:82472749-82472768 Msa0380650:intron 40.0%
! CTAGGAATCCTTTATTTCCC+GGG + chr3_1:82472750-82472769 Msa0380650:intron 40.0%
AAACAACTCCCGGGAAATAA+AGG - chr3_1:82472761-82472780 None:intergenic 40.0%
CGGTTTATGACAGTCAACTA+AGG - chr3_1:82472870-82472889 None:intergenic 40.0%
ACAATAGAGAGGAAGTTGTG+CGG - chr3_1:82473191-82473210 None:intergenic 40.0%
ACAAGGGGAGTTAATTGAGT+CGG - chr3_1:82473468-82473487 None:intergenic 40.0%
TCAATTGATAAGGAGGGGAA+TGG - chr3_1:82473893-82473912 None:intergenic 40.0%
!! ACACCTTGAGTGTCGAAATT+GGG - chr3_1:82474147-82474166 None:intergenic 40.0%
TAAACCTTTCAGCATGAGCT+GGG - chr3_1:82474250-82474269 None:intergenic 40.0%
ATAAACCTTTCAGCATGAGC+TGG - chr3_1:82474251-82474270 None:intergenic 40.0%
TTTGCTGGGGATGAAGAAAT+TGG + chr3_1:82474512-82474531 Msa0380650:three_prime_UTR 40.0%
GAAATTGGTTATTGGGTGAG+TGG + chr3_1:82474527-82474546 Msa0380650:three_prime_UTR 40.0%
!!! GGTTTTTTAACTACTTGGCG+TGG + chr3_1:82474677-82474696 Msa0380650:three_prime_UTR 40.0%
ATGACTCTTGAGCAACATTC+TGG - chr3_1:82474729-82474748 None:intergenic 40.0%
AGAATGTTGCTCAAGAGTCA+TGG + chr3_1:82474728-82474747 Msa0380650:three_prime_UTR 40.0%
GACACACTCCTTACTATGTC+GGG - chr3_1:82467614-82467633 None:intergenic 45.0%
TTGCCTTAGAAGAAGTGGTG+CGG - chr3_1:82467715-82467734 None:intergenic 45.0%
AGAGCTTGCCTTAGAAGAAG+TGG - chr3_1:82467720-82467739 None:intergenic 45.0%
!!! TTTTTCCGACGGTGGATTGA+TGG - chr3_1:82467829-82467848 None:intergenic 45.0%
TCCAAACGGAAGTTACTCGA+CGG - chr3_1:82467906-82467925 None:intergenic 45.0%
TGTGCTAGGTATATGGATGG+AGG + chr3_1:82468102-82468121 Msa0380650:intron 45.0%
GTGCTAGGTATATGGATGGA+GGG + chr3_1:82468103-82468122 Msa0380650:intron 45.0%
GGATGGAGGGACATTAACTT+TGG + chr3_1:82468116-82468135 Msa0380650:CDS 45.0%
TGGAGGGACATTAACTTTGG+AGG + chr3_1:82468119-82468138 Msa0380650:CDS 45.0%
!! TTGGCAGCTTTAGGCAAACA+AGG - chr3_1:82469327-82469346 None:intergenic 45.0%
TCCCTATCAGTGGTCTTCTA+TGG + chr3_1:82469411-82469430 Msa0380650:intron 45.0%
TGGTCTTCTATGGAAAGGTC+AGG + chr3_1:82469421-82469440 Msa0380650:intron 45.0%
GATGGGGATTGTAACTTCTC+CGG - chr3_1:82469912-82469931 None:intergenic 45.0%
ATCACTCATTAGCTGCCTTG+CGG + chr3_1:82469956-82469975 Msa0380650:intron 45.0%
CACTACACCCCAATCCAAAA+TGG + chr3_1:82470013-82470032 Msa0380650:intron 45.0%
! ATGTCTAGGGTGATGTGGAA+AGG - chr3_1:82470230-82470249 None:intergenic 45.0%
!! CTCTGAAGCATCATCATTGG+TGG + chr3_1:82470861-82470880 Msa0380650:intron 45.0%
AGATTGATGGGGGTCAACAT+AGG - chr3_1:82471038-82471057 None:intergenic 45.0%
TATGTTGACCCCCATCAATC+TGG + chr3_1:82471037-82471056 Msa0380650:intron 45.0%
ATCAACCATGGATTCAAGCG+AGG - chr3_1:82471591-82471610 None:intergenic 45.0%
! TCTCACTGGTGAAGTATCCA+GGG - chr3_1:82471651-82471670 None:intergenic 45.0%
ACGAAATTCACTTGCTCCTG+AGG + chr3_1:82471768-82471787 Msa0380650:intron 45.0%
! ATACGGTGTGACAAGTTGGA+TGG + chr3_1:82471863-82471882 Msa0380650:intron 45.0%
TCATGCTTGTCGTGATCTCA+TGG + chr3_1:82471993-82472012 Msa0380650:intron 45.0%
CCAAAGATATGCATGGAGCT+GGG - chr3_1:82472057-82472076 None:intergenic 45.0%
ACCAAAGATATGCATGGAGC+TGG - chr3_1:82472058-82472077 None:intergenic 45.0%
!! TTCTTGAATTTGTTGGCGGG+AGG + chr3_1:82472126-82472145 Msa0380650:intron 45.0%
!! TCTTGAATTTGTTGGCGGGA+GGG + chr3_1:82472127-82472146 Msa0380650:intron 45.0%
TGTAGCCAATCCCACCTAAT+GGG - chr3_1:82472238-82472257 None:intergenic 45.0%
TGTCCTACCATAGATCATGC+AGG + chr3_1:82472278-82472297 Msa0380650:intron 45.0%
TCCCAGGAAAGGTTATTCCT+AGG - chr3_1:82472532-82472551 None:intergenic 45.0%
CCGGGAAATAAAGGATTCCT+AGG - chr3_1:82472752-82472771 None:intergenic 45.0%
AATTCTAACCTCCACGTTCC+TGG + chr3_1:82472812-82472831 Msa0380650:intron 45.0%
ATTCTAACCTCCACGTTCCT+GGG + chr3_1:82472813-82472832 Msa0380650:intron 45.0%
AATTATTCCCAGGAACGTGG+AGG - chr3_1:82472823-82472842 None:intergenic 45.0%
TGACTGTCATAAACCGGTGT+AGG + chr3_1:82472874-82472893 Msa0380650:intron 45.0%
GAGAGAATACTCTCCTACAC+CGG - chr3_1:82472890-82472909 None:intergenic 45.0%
!! TTCTGGGACTATTCTCCACT+TGG + chr3_1:82473042-82473061 Msa0380650:intron 45.0%
AGTAAGGAGGATAGACCAAG+TGG - chr3_1:82473060-82473079 None:intergenic 45.0%
ACTTGGTCTATCCTCCTTAC+TGG + chr3_1:82473059-82473078 Msa0380650:intron 45.0%
TCGCAGAATAACCAGTAAGG+AGG - chr3_1:82473073-82473092 None:intergenic 45.0%
GACTCGCAGAATAACCAGTA+AGG - chr3_1:82473076-82473095 None:intergenic 45.0%
GGTAGAGTCTCATCTCAAGA+TGG - chr3_1:82473143-82473162 None:intergenic 45.0%
GGAGACACACAAGACAAGAT+AGG - chr3_1:82473230-82473249 None:intergenic 45.0%
CACAAGGTTCATCGGAACAA+GGG - chr3_1:82473782-82473801 None:intergenic 45.0%
ACACAAGGTTCATCGGAACA+AGG - chr3_1:82473783-82473802 None:intergenic 45.0%
! AGTGTCGAAATTGGGGATGA+CGG - chr3_1:82474139-82474158 None:intergenic 45.0%
ATCCCCAATTTCGACACTCA+AGG + chr3_1:82474141-82474160 Msa0380650:CDS 45.0%
!! CACCTTGAGTGTCGAAATTG+GGG - chr3_1:82474146-82474165 None:intergenic 45.0%
!! GACACCTTGAGTGTCGAAAT+TGG - chr3_1:82474148-82474167 None:intergenic 45.0%
!! TTGTAAGAACTGATGGTGGC+TGG + chr3_1:82474174-82474193 Msa0380650:CDS 45.0%
! ATTCGAGAACATCTGAAGCG+CGG + chr3_1:82474269-82474288 Msa0380650:CDS 45.0%
ACCGAAAAACTGTGGGACAA+GGG - chr3_1:82474376-82474395 None:intergenic 45.0%
GTAAGCCACCGAAAAACTGT+GGG - chr3_1:82474383-82474402 None:intergenic 45.0%
TGTAAGCCACCGAAAAACTG+TGG - chr3_1:82474384-82474403 None:intergenic 45.0%
ACACTTGAGGAACACTTTGC+TGG + chr3_1:82474497-82474516 Msa0380650:three_prime_UTR 45.0%
CACTTGAGGAACACTTTGCT+GGG + chr3_1:82474498-82474517 Msa0380650:three_prime_UTR 45.0%
ACTTGAGGAACACTTTGCTG+GGG + chr3_1:82474499-82474518 Msa0380650:three_prime_UTR 45.0%
TTGGTTATTGGGTGAGTGGT+AGG + chr3_1:82474531-82474550 Msa0380650:three_prime_UTR 45.0%
TGGTCTCTTCTCTTCAGCAT+CGG + chr3_1:82474656-82474675 Msa0380650:three_prime_UTR 45.0%
!!! TTAATTATTATTGTTATTAA+TGG + chr3_1:82468869-82468888 Msa0380650:intron 5.0%
!!! TTTTATATAAATTTTCTTTT+GGG - chr3_1:82471137-82471156 None:intergenic 5.0%
!!! ATTTTATATAAATTTTCTTT+TGG - chr3_1:82471138-82471157 None:intergenic 5.0%
!!! TCGTTTGGTTTTTCCGACGG+TGG - chr3_1:82467837-82467856 None:intergenic 50.0%
CCAAACGGAAGTTACTCGAC+GGG - chr3_1:82467905-82467924 None:intergenic 50.0%
GTCGAGTAACTTCCGTTTGG+AGG + chr3_1:82467905-82467924 Msa0380650:CDS 50.0%
GGAGGATGAGAAAGCTGTAG+TGG + chr3_1:82468137-82468156 Msa0380650:CDS 50.0%
! CATATGTGTCGCTGTCGACA+CGG + chr3_1:82468457-82468476 Msa0380650:intron 50.0%
ACACGATACGTATCCGACAC+AGG + chr3_1:82468486-82468505 Msa0380650:intron 50.0%
CACGATACGTATCCGACACA+GGG + chr3_1:82468487-82468506 Msa0380650:intron 50.0%
GCACAGATACTCCTCGGATT+AGG - chr3_1:82468518-82468537 None:intergenic 50.0%
ACAGATACTTGGGCCCTGTT+TGG + chr3_1:82468563-82468582 Msa0380650:intron 50.0%
CTACAGGACATAGTGAAGGC+TGG - chr3_1:82469468-82469487 None:intergenic 50.0%
GTACACCTAGTTTCGTCCCT+GGG - chr3_1:82469839-82469858 None:intergenic 50.0%
! TGACATTTTGGACCTTGGGG+TGG - chr3_1:82469879-82469898 None:intergenic 50.0%
!! CATTGCAACCGGGAAGCATT+GGG - chr3_1:82470552-82470571 None:intergenic 50.0%
GACTAGACGCATCGTATGTG+AGG - chr3_1:82470669-82470688 None:intergenic 50.0%
TGCAGGGAGTCCAGATTGAT+GGG - chr3_1:82471050-82471069 None:intergenic 50.0%
ATGCAGGGAGTCCAGATTGA+TGG - chr3_1:82471051-82471070 None:intergenic 50.0%
AATCTGGACTCCCTGCATAC+AGG + chr3_1:82471053-82471072 Msa0380650:intron 50.0%
ATCTGGACTCCCTGCATACA+GGG + chr3_1:82471054-82471073 Msa0380650:intron 50.0%
! CTCTCACTGGTGAAGTATCC+AGG - chr3_1:82471652-82471671 None:intergenic 50.0%
TGCATGGAGCTGGGAAAGAA+AGG - chr3_1:82472048-82472067 None:intergenic 50.0%
CCCAGCTCCATGCATATCTT+TGG + chr3_1:82472054-82472073 Msa0380650:intron 50.0%
!! CTTGAATTTGTTGGCGGGAG+GGG + chr3_1:82472128-82472147 Msa0380650:intron 50.0%
CTTGTCCCATTAGGTGGGAT+TGG + chr3_1:82472230-82472249 Msa0380650:intron 50.0%
GTGTAGCCAATCCCACCTAA+TGG - chr3_1:82472239-82472258 None:intergenic 50.0%
GCGCTCTCAGATCCTTTGAA+AGG + chr3_1:82472419-82472438 Msa0380650:intron 50.0%
!! CTTAGGGGGCGTTTGTTTGA+CGG + chr3_1:82472493-82472512 Msa0380650:intron 50.0%
!! CTAAGGGGGTGTTTGTTTCC+TGG - chr3_1:82472853-82472872 None:intergenic 50.0%
!! TATGCCTTCGTTGGCTTTCC+CGG + chr3_1:82473695-82473714 Msa0380650:intron 50.0%
TCGGGTGACACAAGGTTCAT+CGG - chr3_1:82473790-82473809 None:intergenic 50.0%
AGTACCCAGCTCATGCTGAA+AGG + chr3_1:82474243-82474262 Msa0380650:CDS 50.0%
! TTCGAGAACATCTGAAGCGC+GGG + chr3_1:82474270-82474289 Msa0380650:CDS 50.0%
CCGAAAAACTGTGGGACAAG+GGG - chr3_1:82474375-82474394 None:intergenic 50.0%
! CCCCTTGTCCCACAGTTTTT+CGG + chr3_1:82474372-82474391 Msa0380650:three_prime_UTR 50.0%
CACCGAAAAACTGTGGGACA+AGG - chr3_1:82474377-82474396 None:intergenic 50.0%
!! CTTGTCCCACAGTTTTTCGG+TGG + chr3_1:82474375-82474394 Msa0380650:three_prime_UTR 50.0%
TGGCCGCACCACTTCTTCTA+AGG + chr3_1:82467709-82467728 Msa0380650:CDS 55.0%
CTTCACCGTCAGAACCGTTG+CGG + chr3_1:82467773-82467792 Msa0380650:CDS 55.0%
!! TTCCGACGGTGGATTGATGG+CGG - chr3_1:82467826-82467845 None:intergenic 55.0%
CCCGTCGAGTAACTTCCGTT+TGG + chr3_1:82467902-82467921 Msa0380650:CDS 55.0%
GATTAGGCGTGTCCCTGTGT+CGG - chr3_1:82468502-82468521 None:intergenic 55.0%
TCTGACCCAGGGACGAAACT+AGG + chr3_1:82469831-82469850 Msa0380650:intron 55.0%
CGTACACCTAGTTTCGTCCC+TGG - chr3_1:82469840-82469859 None:intergenic 55.0%
AGTCAGTGATGTACGCCGCA+AGG - chr3_1:82469974-82469993 None:intergenic 55.0%
!! GGAAGCATTGGGTCAGTGCA+GGG - chr3_1:82470541-82470560 None:intergenic 55.0%
! TGCACTGACCCAATGCTTCC+CGG + chr3_1:82470541-82470560 Msa0380650:intron 55.0%
! GCATTGCAACCGGGAAGCAT+TGG - chr3_1:82470553-82470572 None:intergenic 55.0%
CAGGGAGTCCAGATTGATGG+GGG - chr3_1:82471048-82471067 None:intergenic 55.0%
GCAGGGAGTCCAGATTGATG+GGG - chr3_1:82471049-82471068 None:intergenic 55.0%
TCTGGACTCCCTGCATACAG+GGG + chr3_1:82471055-82471074 Msa0380650:intron 55.0%
! GAGTAGTGGAGAAAGGCCTC+AGG - chr3_1:82471787-82471806 None:intergenic 55.0%
AGTGGGATTCGGGTGACACA+AGG - chr3_1:82473798-82473817 None:intergenic 55.0%
ACAGGGACACGCCTAATCCG+AGG + chr3_1:82468504-82468523 Msa0380650:intron 60.0%
GCAGTCTGCCTGTCTGGTCA+TGG - chr3_1:82469263-82469282 None:intergenic 60.0%
TGACCAGACAGGCAGACTGC+AGG + chr3_1:82469263-82469282 Msa0380650:intron 60.0%
GAACCTGCAGTCTGCCTGTC+TGG - chr3_1:82469269-82469288 None:intergenic 60.0%
GACAGGCAGACTGCAGGTTC+AGG + chr3_1:82469269-82469288 Msa0380650:intron 60.0%
GCATTGGGTCAGTGCAGGGA+CGG - chr3_1:82470537-82470556 None:intergenic 60.0%
!! GGGAAGCATTGGGTCAGTGC+AGG - chr3_1:82470542-82470561 None:intergenic 60.0%
AGGGAAAGGTCAAAGGGCCC+TGG + chr3_1:82470824-82470843 Msa0380650:intron 60.0%
GAAAGGTCAAAGGGCCCTGG+TGG + chr3_1:82470827-82470846 Msa0380650:intron 60.0%
GAGCATCCACCAGACCACCA+GGG - chr3_1:82470844-82470863 None:intergenic 60.0%
! AGAGCATCCACCAGACCACC+AGG - chr3_1:82470845-82470864 None:intergenic 60.0%
GTGACCGGGAAAGCCAACGA+AGG - chr3_1:82473702-82473721 None:intergenic 60.0%
TGAACGATGGCGCGCCGCAA+CGG - chr3_1:82467790-82467809 None:intergenic 65.0%
TTGCGGCGCGCCATCGTTCA+TGG + chr3_1:82467790-82467809 Msa0380650:CDS 65.0%
CGGCGCTGCACCATGAACGA+TGG - chr3_1:82467803-82467822 None:intergenic 65.0%
!! CGACGGTGGATTGATGGCGG+CGG - chr3_1:82467823-82467842 None:intergenic 65.0%
CGCCGCCATCAATCCACCGT+CGG + chr3_1:82467821-82467840 Msa0380650:CDS 65.0%
GTCAAAGGGCCCTGGTGGTC+TGG + chr3_1:82470832-82470851 Msa0380650:intron 65.0%
AAAGGGCCCTGGTGGTCTGG+TGG + chr3_1:82470835-82470854 Msa0380650:intron 65.0%
! GCGCGCCGCAACGGTTCTGA+CGG - chr3_1:82467781-82467800 None:intergenic 70.0%
TAGGGGCAGTCGCCACCCCA+AGG + chr3_1:82469864-82469883 Msa0380650:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82467602 82474784 82467602 ID=Msa0380650;Name=Msa0380650
chr3_1 mRNA 82467602 82474784 82467602 ID=Msa0380650-mRNA-1;Parent=Msa0380650;Name=Msa0380650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|1|1|3|483|202
chr3_1 exon 82467602 82468030 82467602 ID=Msa0380650-mRNA-1:exon:21015;Parent=Msa0380650-mRNA-1
chr3_1 exon 82468110 82468224 82468110 ID=Msa0380650-mRNA-1:exon:21016;Parent=Msa0380650-mRNA-1
chr3_1 exon 82474131 82474784 82474131 ID=Msa0380650-mRNA-1:exon:21017;Parent=Msa0380650-mRNA-1
chr3_1 five_prime_UTR 82467602 82467707 82467602 ID=Msa0380650-mRNA-1:five_prime_utr;Parent=Msa0380650-mRNA-1
chr3_1 CDS 82467708 82468030 82467708 ID=Msa0380650-mRNA-1:cds;Parent=Msa0380650-mRNA-1
chr3_1 CDS 82468110 82468224 82468110 ID=Msa0380650-mRNA-1:cds;Parent=Msa0380650-mRNA-1
chr3_1 CDS 82474131 82474301 82474131 ID=Msa0380650-mRNA-1:cds;Parent=Msa0380650-mRNA-1
chr3_1 three_prime_UTR 82474302 82474784 82474302 ID=Msa0380650-mRNA-1:three_prime_utr;Parent=Msa0380650-mRNA-1
Gene Sequence

>Msa0380650

ATGGCCGCACCACTTCTTCTAAGGCAAGCTCTGTTAATTCGCGCTTGTTTCCATAACTACAAACACTTCACCGTCAGAACCGTTGCGGCGCGCCATCGTTCATGGTGCAGCGCCGCCGCCATCAATCCACCGTCGGAAAAACCAAACGATAAACCTAACTCCGTTAACAACACGTTAAATCGGAGAGATGTTTACCCGTCGAGTAACTTCCGTTTGGAGGATGAAGAATCTGATTATCGAAAATGGAAGGATAAAGAAGATGAGATTTTCAATGATATTGAACCTATTATCGTGCTTACTAAGGAAATTCTTCATTCATCAAAGTATATGGATGGAGGGACATTAACTTTGGAGGATGAGAAAGCTGTAGTGGAAAAGCTTCTTGCTTATCATCCACACTCTGAAGATAAGATTGGATGTGGTCTTGAATCCATTATGGTTGACCGTCATCCCCAATTTCGACACTCAAGGTGTCTTTTTGTTGTAAGAACTGATGGTGGCTGGATTGATTTCTCATATCAGAAGTGCCTTCGAGAATACATTAAAAAGAAGTACCCAGCTCATGCTGAAAGGTTTATTCGAGAACATCTGAAGCGCGGGAGTAGTTGA

Protein sequence

>Msa0380650

MAAPLLLRQALLIRACFHNYKHFTVRTVAARHRSWCSAAAINPPSEKPNDKPNSVNNTLNRRDVYPSSNFRLEDEESDYRKWKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKAVVEKLLAYHPHSEDKIGCGLESIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPAHAERFIREHLKRGSS*