Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615600 | XP_003608499.1 | 97.455 | 275 | 5 | 1 | 1 | 275 | 1 | 273 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615600 | sp|E0ZS47|UREG_ORYSI | 89.069 | 247 | 27 | 0 | 30 | 276 | 38 | 284 | 2.83e-164 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030000 | Msa0615600 | 0.825991 | 3.466139e-54 | -8.615850e-47 |
| Msa0606060 | Msa0615600 | 0.826779 | 2.249217e-54 | -8.615850e-47 |
| Msa0615600 | Msa0624730 | 0.806836 | 6.779380e-50 | -8.615850e-47 |
| Msa0615600 | Msa0626230 | 0.808904 | 2.462740e-50 | -8.615850e-47 |
| Msa0615600 | Msa0647000 | 0.825728 | 4.000912e-54 | -8.615850e-47 |
| Msa0615600 | Msa0674220 | 0.802787 | 4.753931e-49 | -8.615850e-47 |
| Msa0615600 | Msa0686610 | 0.825855 | 3.733956e-54 | -8.615850e-47 |
| Msa0615600 | Msa0697540 | 0.813439 | 2.558068e-51 | -8.615850e-47 |
| Msa0615600 | Msa0698760 | 0.935620 | 6.366235e-97 | -8.615850e-47 |
| Msa0615600 | Msa0726440 | 0.801827 | 7.491433e-49 | -8.615850e-47 |
| Msa0615600 | Msa0792510 | 0.808720 | 2.696309e-50 | -8.615850e-47 |
| Msa0615600 | Msa0836190 | 0.804482 | 2.115115e-49 | -8.615850e-47 |
| Msa0615600 | Msa0946650 | 0.800784 | 1.225241e-48 | -8.615850e-47 |
| Msa0615600 | Msa1011210 | 0.803459 | 3.450850e-49 | -8.615850e-47 |
| Msa0615600 | Msa1028460 | 0.806522 | 7.896137e-50 | -8.615850e-47 |
| Msa0615600 | Msa1038050 | 0.819638 | 1.045761e-52 | -8.615850e-47 |
| Msa0615600 | Msa1058010 | 0.819809 | 9.555737e-53 | -8.615850e-47 |
| Msa0615600 | Msa1073840 | 0.800785 | 1.224750e-48 | -8.615850e-47 |
| Msa0615600 | Msa1099030 | 0.811947 | 5.426277e-51 | -8.615850e-47 |
| Msa0615600 | Msa1102540 | 0.804212 | 2.407625e-49 | -8.615850e-47 |
| Msa0615600 | Msa1129720 | 0.802595 | 5.206000e-49 | -8.615850e-47 |
| Msa0615600 | Msa1159990 | 0.800289 | 1.545370e-48 | -8.615850e-47 |
| Msa0615600 | Msa1254770 | 0.800907 | 1.156386e-48 | -8.615850e-47 |
| Msa0615600 | Msa1265260 | 0.801117 | 1.047642e-48 | -8.615850e-47 |
| Msa0615600 | Msa1267330 | 0.804930 | 1.705028e-49 | -8.615850e-47 |
| Msa0615600 | Msa1283770 | 0.816047 | 6.762613e-52 | -8.615850e-47 |
| Msa0615600 | Msa1310110 | 0.810499 | 1.118448e-50 | -8.615850e-47 |
| Msa0615600 | Msa1337510 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0615600 | Msa1373950 | 0.801434 | 9.019171e-49 | -8.615850e-47 |
| Msa0615600 | Msa1375630 | 0.833466 | 5.248549e-56 | -8.615850e-47 |
| Msa0615600 | Msa1376530 | 0.818593 | 1.807915e-52 | -8.615850e-47 |
| Msa0615600 | Msa1442030 | 0.805153 | 1.531449e-49 | -8.615850e-47 |
| Msa0615600 | Msa1456810 | 0.804622 | 1.977767e-49 | -8.615850e-47 |
| Msa0125230 | Msa0615600 | 0.803908 | 2.784829e-49 | -8.615850e-47 |
| Msa0181410 | Msa0615600 | 0.806336 | 8.644099e-50 | -8.615850e-47 |
| Msa0207000 | Msa0615600 | 0.830893 | 2.272489e-55 | -8.615850e-47 |
| Msa0214730 | Msa0615600 | 0.807906 | 4.019796e-50 | -8.615850e-47 |
| Msa0230400 | Msa0615600 | 0.817148 | 3.831754e-52 | -8.615850e-47 |
| Msa0380420 | Msa0615600 | 0.831453 | 1.654959e-55 | -8.615850e-47 |
| Msa0402640 | Msa0615600 | 0.801610 | 8.300552e-49 | -8.615850e-47 |
| Msa0466100 | Msa0615600 | 0.814827 | 1.263365e-51 | -8.615850e-47 |
| Msa0466730 | Msa0615600 | 0.841429 | 4.776784e-58 | -8.615850e-47 |
| Msa0274780 | Msa0615600 | 0.810546 | 1.092148e-50 | -8.615850e-47 |
| Msa0298940 | Msa0615600 | 0.816409 | 5.614450e-52 | -8.615850e-47 |
| Msa0298970 | Msa0615600 | 0.806967 | 6.360539e-50 | -8.615850e-47 |
| Msa0342200 | Msa0615600 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
| Msa0524120 | Msa0615600 | 0.803377 | 3.588309e-49 | -8.615850e-47 |
| Msa0582110 | Msa0615600 | 0.803460 | 3.448777e-49 | -8.615850e-47 |
| Msa0596100 | Msa0615600 | 0.805255 | 1.457954e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615600 | MtrunA17_Chr4g0052181 | 97.455 | 275 | 5 | 1 | 1 | 275 | 1 | 273 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615600 | AT2G34470.1 | 88.710 | 248 | 28 | 0 | 29 | 276 | 28 | 275 | 1.43e-164 | 457 |
| Msa0615600 | AT2G34470.2 | 88.710 | 248 | 28 | 0 | 29 | 276 | 29 | 276 | 1.56e-164 | 457 |
Find 107 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGCTTCTTTGTGAATC+TGG | 0.175946 | 4_2:-65063157 | Msa0615600:CDS |
| AAATTGAATAGACTAATTAA+TGG | 0.238739 | 4_2:+65059856 | None:intergenic |
| ATGTTCTAGTCCCCTAAAAT+AGG | 0.249507 | 4_2:-65059751 | None:intergenic |
| AGCCAGTTCCCTGCTGAAAT+TGG | 0.282236 | 4_2:+65062448 | None:intergenic |
| TAAATATGCACAAGCATATA+TGG | 0.285155 | 4_2:-65059937 | Msa0615600:three_prime_UTR |
| AAGTTCAAAATTAAATATAC+TGG | 0.300092 | 4_2:+65059778 | None:intergenic |
| TTAATTGAGTAATAGCATTA+AGG | 0.303583 | 4_2:-65059835 | Msa0615600:three_prime_UTR |
| TCATGCAGCGGGACGCTCTT+AGG | 0.322100 | 4_2:-65062177 | Msa0615600:CDS |
| CAGTAACAACCAATGTCTTC+TGG | 0.340439 | 4_2:-65063661 | Msa0615600:exon |
| ATTTACATCATAGATGTATC+TGG | 0.342801 | 4_2:-65062416 | Msa0615600:CDS |
| TATAAAAGTGTATGGAACTA+TGG | 0.350428 | 4_2:-65060029 | Msa0615600:three_prime_UTR |
| TGAATGAATCACCATGCTTA+TGG | 0.354134 | 4_2:+65063581 | None:intergenic |
| TCTTGTCGTATTGTTTGAAT+TGG | 0.354381 | 4_2:-65063750 | Msa0615600:five_prime_UTR |
| ATTTGCTTCTTTGTGAATCT+GGG | 0.355601 | 4_2:-65063156 | Msa0615600:CDS |
| TTGAACTCGGATTGGTCAAC+AGG | 0.362943 | 4_2:-65060236 | Msa0615600:three_prime_UTR |
| ACAGCACGTATCCTTTCTTC+AGG | 0.376767 | 4_2:+65063271 | None:intergenic |
| AGCTCTTCTGCTGAAGAATC+CGG | 0.384758 | 4_2:+65063486 | None:intergenic |
| GATGTTCATGTTCATGTTCA+TGG | 0.388355 | 4_2:+65063626 | None:intergenic |
| AGATCAGCTTGTGTGATTCC+AGG | 0.402269 | 4_2:+65062365 | None:intergenic |
| GCTTTCACTGTTGGCATTGG+TGG | 0.407273 | 4_2:-65063430 | Msa0615600:CDS |
| AAGCATGGTGATTCATTCAT+AGG | 0.410944 | 4_2:-65063577 | Msa0615600:CDS |
| TTGAAGTCTCTGTTGATAAG+AGG | 0.414084 | 4_2:+65063460 | None:intergenic |
| TGCCAATTTCAGCAGGGAAC+TGG | 0.418166 | 4_2:-65062450 | Msa0615600:CDS |
| ACTGACCTTGCACAAGCAAT+TGG | 0.422106 | 4_2:-65062214 | Msa0615600:CDS |
| GAGGATATTAGTATTAATCT+TGG | 0.429762 | 4_2:-65063214 | Msa0615600:CDS |
| ATCTATCGCCAGTGGTCATT+CGG | 0.436688 | 4_2:-65060076 | Msa0615600:three_prime_UTR |
| CACACATCTATAAAAGTGTA+TGG | 0.439121 | 4_2:-65060037 | Msa0615600:three_prime_UTR |
| GGGGCCATTTGTATTTGCTC+AGG | 0.445112 | 4_2:-65062143 | Msa0615600:intron |
| AATGAAAGAGCTTTCACTGT+TGG | 0.460936 | 4_2:-65063439 | Msa0615600:CDS |
| ATGACTCATACACACTGATT+AGG | 0.461704 | 4_2:+65060105 | None:intergenic |
| ACAAGCAATTGGAGCTGACT+TGG | 0.465545 | 4_2:-65062203 | Msa0615600:CDS |
| CATGCTTATGGTCGTGGTCG+TGG | 0.466877 | 4_2:+65063593 | None:intergenic |
| ATTCCAGGACCACCTTTCCT+AGG | 0.479928 | 4_2:+65062380 | None:intergenic |
| AGGATACGTGCTGTTGAAAC+TGG | 0.483161 | 4_2:-65063262 | Msa0615600:CDS |
| ATTCCTAGGAAAGGTGGTCC+TGG | 0.484751 | 4_2:-65062383 | Msa0615600:CDS |
| ACTTGGCTGCCAATTTCAGC+AGG | 0.489264 | 4_2:-65062457 | Msa0615600:CDS |
| AACGTGAGACCATGTGCAAT+GGG | 0.491116 | 4_2:+65063791 | None:intergenic |
| CTAACCTGAGCAAATACAAA+TGG | 0.498076 | 4_2:+65062139 | None:intergenic |
| GTGCAAGACCGTCGTGGCTA+TGG | 0.498501 | 4_2:+65063536 | None:intergenic |
| ATTGGTGGACCTGTCGGTAC+AGG | 0.499612 | 4_2:-65063415 | Msa0615600:CDS |
| CAGGCATGGGAAGCAGCCAC+AGG | 0.500416 | 4_2:-65060295 | Msa0615600:CDS |
| ACGCTCTTAGGATGAGAGAT+GGG | 0.500618 | 4_2:-65062165 | Msa0615600:CDS |
| ATGTTCATGTTCATGTTCAT+GGG | 0.501934 | 4_2:+65063627 | None:intergenic |
| TATGGTCGTGGTCGTGGTCA+TGG | 0.502105 | 4_2:+65063599 | None:intergenic |
| TGACTTGGGTGTCATGCAGC+GGG | 0.509346 | 4_2:-65062188 | Msa0615600:CDS |
| AAGAATCCGGGAGAGTAGAT+TGG | 0.514564 | 4_2:+65063499 | None:intergenic |
| CTCAGTTCTCAGTGTACTTG+AGG | 0.515279 | 4_2:+65063700 | None:intergenic |
| GATATATTTACCAAAGAAGA+TGG | 0.517233 | 4_2:-65063322 | Msa0615600:CDS |
| GATTCATTCATAGGCGCTGA+TGG | 0.520559 | 4_2:-65063568 | Msa0615600:CDS |
| ATAAAGCGTTGCCTGAAGAA+AGG | 0.520668 | 4_2:-65063282 | Msa0615600:CDS |
| CACGAACCAATCTACTCTCC+CGG | 0.524829 | 4_2:-65063505 | Msa0615600:CDS |
| CTGGTGGTGATAAAATTCCT+AGG | 0.528983 | 4_2:-65062397 | Msa0615600:CDS |
| AGAGCTTTCACTGTTGGCAT+TGG | 0.531958 | 4_2:-65063433 | Msa0615600:CDS |
| GCTCTTCTGCTGAAGAATCC+GGG | 0.539942 | 4_2:+65063487 | None:intergenic |
| TTTGAAGCATGTTACCACCT+TGG | 0.540138 | 4_2:-65060129 | Msa0615600:three_prime_UTR |
| GGAATGATATATAAGAAAGC+TGG | 0.547268 | 4_2:-65060213 | Msa0615600:three_prime_UTR |
| AATCACCATGCTTATGGTCG+TGG | 0.547512 | 4_2:+65063587 | None:intergenic |
| CGCTCTTAGGATGAGAGATG+GGG | 0.549938 | 4_2:-65062164 | Msa0615600:CDS |
| AAACGTGAGACCATGTGCAA+TGG | 0.551160 | 4_2:+65063790 | None:intergenic |
| TATTTATACCGAATGACCAC+TGG | 0.554128 | 4_2:+65060068 | None:intergenic |
| TATTAATCTTGGTCCACTTG+AGG | 0.557139 | 4_2:-65063203 | Msa0615600:CDS |
| CTGACTTGGGTGTCATGCAG+CGG | 0.557266 | 4_2:-65062189 | Msa0615600:CDS |
| GATAAAATTCCTAGGAAAGG+TGG | 0.562010 | 4_2:-65062389 | Msa0615600:CDS |
| AAATGTTGTTGAACTCGGAT+TGG | 0.562865 | 4_2:-65060244 | Msa0615600:three_prime_UTR |
| GACGCTCTTAGGATGAGAGA+TGG | 0.565202 | 4_2:-65062166 | Msa0615600:CDS |
| TTTGCTTCTTTGTGAATCTG+GGG | 0.566680 | 4_2:-65063155 | Msa0615600:CDS |
| TTGCTTCTTTGTGAATCTGG+GGG | 0.567232 | 4_2:-65063154 | Msa0615600:CDS |
| CGGGAGAGTAGATTGGTTCG+TGG | 0.576489 | 4_2:+65063506 | None:intergenic |
| ATACACACTGATTAGGTCCA+AGG | 0.590007 | 4_2:+65060112 | None:intergenic |
| GAAGCACAATGTTGGAGTAG+AGG | 0.590855 | 4_2:-65060338 | Msa0615600:CDS |
| GTACAGGTGAAGCACAATGT+TGG | 0.592303 | 4_2:-65060346 | Msa0615600:intron |
| GGTGATAAAATTCCTAGGAA+AGG | 0.593250 | 4_2:-65062392 | Msa0615600:CDS |
| CTGGTAGCTCGAGTGAGGAG+TGG | 0.594689 | 4_2:-65060194 | Msa0615600:three_prime_UTR |
| AGGTATCTCGAGATGAGGTG+TGG | 0.598392 | 4_2:+65063726 | None:intergenic |
| GAAAGCTGGTAGCTCGAGTG+AGG | 0.598480 | 4_2:-65060199 | Msa0615600:three_prime_UTR |
| CAGCTCCAATTGCTTGTGCA+AGG | 0.599925 | 4_2:+65062209 | None:intergenic |
| GGGAGAGTAGATTGGTTCGT+GGG | 0.604786 | 4_2:+65063507 | None:intergenic |
| AGATTCGAAAGCTCCTCAAG+TGG | 0.607681 | 4_2:+65063190 | None:intergenic |
| TCCTCATGCTGCTATTCGTG+AGG | 0.609749 | 4_2:-65063233 | Msa0615600:CDS |
| CACGACCACGACCATAAGCA+TGG | 0.616537 | 4_2:-65063592 | Msa0615600:CDS |
| AGCATGTATTTGCTAAATGA+AGG | 0.622992 | 4_2:+65059902 | None:intergenic |
| GAATGAAAAGACAACAGACT+AGG | 0.626713 | 4_2:+65060169 | None:intergenic |
| GTTGGCATTGGTGGACCTGT+CGG | 0.627816 | 4_2:-65063421 | Msa0615600:CDS |
| TCTCAGTGTACTTGAGGACG+AGG | 0.627844 | 4_2:+65063706 | None:intergenic |
| CAAGCAATTGGAGCTGACTT+GGG | 0.629109 | 4_2:-65062202 | Msa0615600:CDS |
| TCAACGGCGTTTCTTCCCTG+TGG | 0.629714 | 4_2:+65060279 | None:intergenic |
| GCTCTTAGGATGAGAGATGG+GGG | 0.629998 | 4_2:-65062163 | Msa0615600:CDS |
| GTATGGAACTATGGATCACA+TGG | 0.633853 | 4_2:-65060020 | Msa0615600:three_prime_UTR |
| TGAACTCGGATTGGTCAACA+GGG | 0.635365 | 4_2:-65060235 | Msa0615600:three_prime_UTR |
| TAGATTGGTTCGTGGGAGTG+TGG | 0.638881 | 4_2:+65063514 | None:intergenic |
| GGAAGGACTCCCATTGCACA+TGG | 0.642354 | 4_2:-65063800 | None:intergenic |
| AGGCATGGGAAGCAGCCACA+GGG | 0.654229 | 4_2:-65060294 | Msa0615600:CDS |
| TGATCGCCTCCAGAAGACAT+TGG | 0.658761 | 4_2:+65063652 | None:intergenic |
| CTTGGCTGCCAATTTCAGCA+GGG | 0.659539 | 4_2:-65062456 | Msa0615600:CDS |
| TCCTCACGAATAGCAGCATG+AGG | 0.664652 | 4_2:+65063232 | None:intergenic |
| TACGTGCTGTTGAAACTGGT+GGG | 0.667714 | 4_2:-65063258 | Msa0615600:CDS |
| ATACGTGCTGTTGAAACTGG+TGG | 0.670765 | 4_2:-65063259 | Msa0615600:CDS |
| GGACGAGGTATCTCGAGATG+AGG | 0.673371 | 4_2:+65063721 | None:intergenic |
| TACATCATAGATGTATCTGG+TGG | 0.674288 | 4_2:-65062413 | Msa0615600:CDS |
| TAACAACCAATGTCTTCTGG+AGG | 0.677525 | 4_2:-65063658 | Msa0615600:exon |
| ATGCGTCTATCTATCGCCAG+TGG | 0.688987 | 4_2:-65060084 | Msa0615600:three_prime_UTR |
| CTCTTAGGATGAGAGATGGG+GGG | 0.699631 | 4_2:-65062162 | Msa0615600:CDS |
| ACAAAGTGCTAACATCAAAG+CGG | 0.717423 | 4_2:+65063387 | None:intergenic |
| AAAGTGTACCATAGCCACGA+CGG | 0.720385 | 4_2:-65063544 | Msa0615600:CDS |
| CACACTGATTAGGTCCAAGG+TGG | 0.724603 | 4_2:+65060115 | None:intergenic |
| AGTGTGGTGCAAGACCGTCG+TGG | 0.747780 | 4_2:+65063530 | None:intergenic |
| GAACTCGGATTGGTCAACAG+GGG | 0.750854 | 4_2:-65060234 | Msa0615600:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTGATATAAAAAAAATTT+TGG | - | chr4_2:65061043-65061062 | Msa0615600:intron | 10.0% |
| !! | ATACAAATTAATGTAATTTA+TGG | + | chr4_2:65061959-65061978 | None:intergenic | 10.0% |
| !!! | AATCATGTATTTTGTATTTT+TGG | - | chr4_2:65060591-65060610 | Msa0615600:intron | 15.0% |
| !!! | ATTTTTGATTTTGATGATTA+TGG | - | chr4_2:65061279-65061298 | Msa0615600:intron | 15.0% |
| !! | TCAAACAAAAATACTAAAAT+AGG | - | chr4_2:65062073-65062092 | Msa0615600:intron | 15.0% |
| !!! | TCTTAGATTTGTTTTTAAAT+AGG | - | chr4_2:65062715-65062734 | Msa0615600:intron | 15.0% |
| !! | AAATTGAATAGACTAATTAA+TGG | + | chr4_2:65063697-65063716 | None:intergenic | 15.0% |
| !! | AAGTTCAAAATTAAATATAC+TGG | + | chr4_2:65063775-65063794 | None:intergenic | 15.0% |
| !!! | TTTGATCATATTAGTACTTT+TGG | - | chr4_2:65060815-65060834 | Msa0615600:intron | 20.0% |
| !! | ATAGAACACTTTGAATATTT+GGG | - | chr4_2:65061861-65061880 | Msa0615600:intron | 20.0% |
| !! | TTTCATCTTTCATAATAGTA+AGG | - | chr4_2:65062471-65062490 | Msa0615600:intron | 20.0% |
| !! | ACAATTCAGTTATTTAAACA+GGG | + | chr4_2:65062596-65062615 | None:intergenic | 20.0% |
| !! | AACAATTCAGTTATTTAAAC+AGG | + | chr4_2:65062597-65062616 | None:intergenic | 20.0% |
| !! | TATAAGCAGAAGTAAAATTT+GGG | + | chr4_2:65062902-65062921 | None:intergenic | 20.0% |
| !! | ATATAAGCAGAAGTAAAATT+TGG | + | chr4_2:65062903-65062922 | None:intergenic | 20.0% |
| !! | ATATAACTATTTAGTAGAAC+TGG | - | chr4_2:65062919-65062938 | Msa0615600:intron | 20.0% |
| !! | TAACAAGAGTAGTAAAATAT+TGG | + | chr4_2:65063165-65063184 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAGAAATGTCAA+CGG | + | chr4_2:65063290-65063309 | None:intergenic | 20.0% |
| !! | TTAATTGAGTAATAGCATTA+AGG | - | chr4_2:65063715-65063734 | Msa0615600:five_prime_UTR | 20.0% |
| ! | GATATATTTACCAAAGAAGA+TGG | - | chr4_2:65060228-65060247 | Msa0615600:three_prime_UTR | 25.0% |
| ! | GAGGATATTAGTATTAATCT+TGG | - | chr4_2:65060336-65060355 | Msa0615600:CDS | 25.0% |
| ! | AATACAAAATACATGATTCG+TGG | + | chr4_2:65060589-65060608 | None:intergenic | 25.0% |
| !!! | TTGTATTTTTGGTTTCATAG+TGG | - | chr4_2:65060602-65060621 | Msa0615600:intron | 25.0% |
| !!! | TGTATTTTTGGTTTCATAGT+GGG | - | chr4_2:65060603-65060622 | Msa0615600:intron | 25.0% |
| ! | ACTAATTCGATCAATTGTTA+CGG | - | chr4_2:65060873-65060892 | Msa0615600:intron | 25.0% |
| ! | ATTTACATCATAGATGTATC+TGG | - | chr4_2:65061134-65061153 | Msa0615600:intron | 25.0% |
| !! | TTGATGATTATGGAACTAAT+TGG | - | chr4_2:65061289-65061308 | Msa0615600:intron | 25.0% |
| ! | AACTAATTGGACTTAATTTC+AGG | - | chr4_2:65061302-65061321 | Msa0615600:intron | 25.0% |
| ! | ATATTAACAGGCATTAACTT+GGG | + | chr4_2:65061624-65061643 | None:intergenic | 25.0% |
| ! | AATATTAACAGGCATTAACT+TGG | + | chr4_2:65061625-65061644 | None:intergenic | 25.0% |
| ! | TTAATGCCTGTTAATATTGT+TGG | - | chr4_2:65061627-65061646 | Msa0615600:intron | 25.0% |
| ! | TAATGCCTGTTAATATTGTT+GGG | - | chr4_2:65061628-65061647 | Msa0615600:intron | 25.0% |
| !! | GTTCTATCTGATTTGATAAA+GGG | + | chr4_2:65061848-65061867 | None:intergenic | 25.0% |
| !! | TGTTCTATCTGATTTGATAA+AGG | + | chr4_2:65061849-65061868 | None:intergenic | 25.0% |
| ! | GATAGAACACTTTGAATATT+TGG | - | chr4_2:65061860-65061879 | Msa0615600:intron | 25.0% |
| !!! | TATAATGATGAGAGTATTTG+AGG | - | chr4_2:65061976-65061995 | Msa0615600:intron | 25.0% |
| !! | TTTGCATTAACTTTTGTAGA+TGG | + | chr4_2:65062004-65062023 | None:intergenic | 25.0% |
| ! | TACTAAAATAGGTTGTTTGA+TGG | - | chr4_2:65062084-65062103 | Msa0615600:intron | 25.0% |
| ! | TATACATTAGGTTTGTATCT+TGG | - | chr4_2:65062184-65062203 | Msa0615600:CDS | 25.0% |
| ! | TTTCTACTCAACATTTAAGA+TGG | + | chr4_2:65062240-65062259 | None:intergenic | 25.0% |
| ! | TCTCTTTCAAATTTATTACC+TGG | + | chr4_2:65062272-65062291 | None:intergenic | 25.0% |
| ! | CAGTAATTTGAGAAATAACA+TGG | + | chr4_2:65062330-65062349 | None:intergenic | 25.0% |
| !!! | CATGTTATTTCTCAAATTAC+TGG | - | chr4_2:65062328-65062347 | Msa0615600:intron | 25.0% |
| ! | AAAAGGAAAGGAAATTAACA+CGG | + | chr4_2:65062373-65062392 | None:intergenic | 25.0% |
| ! | GAATGGTATTTATACAAGAT+GGG | + | chr4_2:65062422-65062441 | None:intergenic | 25.0% |
| !!! | CTATACATGATTTTAAGGTT+AGG | + | chr4_2:65062520-65062539 | None:intergenic | 25.0% |
| ! | TCTGATATAAATTCTGATTG+TGG | + | chr4_2:65062640-65062659 | None:intergenic | 25.0% |
| ! | AAATTGATTGATAGATCGAT+TGG | - | chr4_2:65062672-65062691 | Msa0615600:intron | 25.0% |
| ! | GAGTATTTATGATTGAAAGT+TGG | - | chr4_2:65062745-65062764 | Msa0615600:intron | 25.0% |
| ! | GAGTATTTATGATTGAAAGT+TGG | - | chr4_2:65062745-65062764 | Msa0615600:intron | 25.0% |
| ! | TGATTTATAGAAGTGAATCA+AGG | - | chr4_2:65062852-65062871 | Msa0615600:intron | 25.0% |
| ! | AAAAAAATCGCTGTGATATA+AGG | + | chr4_2:65063064-65063083 | None:intergenic | 25.0% |
| !!! | TATATCACAGCGATTTTTTT+CGG | - | chr4_2:65063064-65063083 | Msa0615600:intron | 25.0% |
| ! | CGTTATTTGTAATACAAGAA+AGG | + | chr4_2:65063134-65063153 | None:intergenic | 25.0% |
| ! | AAGAGTAGTAAAATATTGGT+GGG | + | chr4_2:65063161-65063180 | None:intergenic | 25.0% |
| !! | AATTGTGAATCATGTTTTAC+AGG | - | chr4_2:65063236-65063255 | Msa0615600:CDS | 25.0% |
| ! | TTGAAAAATGTTGTTGAACT+CGG | - | chr4_2:65063301-65063320 | Msa0615600:CDS | 25.0% |
| !! | TATAAAAGTGTATGGAACTA+TGG | - | chr4_2:65063521-65063540 | Msa0615600:CDS | 25.0% |
| ! | TAAATATGCACAAGCATATA+TGG | - | chr4_2:65063613-65063632 | Msa0615600:CDS | 25.0% |
| TCTTGTCGTATTGTTTGAAT+TGG | - | chr4_2:65059800-65059819 | Msa0615600:three_prime_UTR | 30.0% | |
| ATGTTCATGTTCATGTTCAT+GGG | + | chr4_2:65059926-65059945 | None:intergenic | 30.0% | |
| ATTTGCTTCTTTGTGAATCT+GGG | - | chr4_2:65060394-65060413 | Msa0615600:intron | 30.0% | |
| TGTTTGATATCACAATGGTT+TGG | - | chr4_2:65060523-65060542 | Msa0615600:intron | 30.0% | |
| !!! | GTTTGGTTTTGCCAAAATTA+TGG | - | chr4_2:65060540-65060559 | Msa0615600:intron | 30.0% |
| ! | AACACTGAACACCATAATTT+TGG | + | chr4_2:65060554-65060573 | None:intergenic | 30.0% |
| TGTAAAAATCTTTACGTGTC+TGG | + | chr4_2:65060646-65060665 | None:intergenic | 30.0% | |
| AATGTGAAGTGGTTTATGTT+TGG | + | chr4_2:65060708-65060727 | None:intergenic | 30.0% | |
| AAAGTGAGTTAAATGTGAAG+TGG | + | chr4_2:65060719-65060738 | None:intergenic | 30.0% | |
| CAAGCACATTCTTAATCTAT+AGG | - | chr4_2:65060782-65060801 | Msa0615600:intron | 30.0% | |
| GGAATAGTTTGATCTACAAT+TGG | - | chr4_2:65060898-65060917 | Msa0615600:intron | 30.0% | |
| !! | CATTTTAGTCCTGAAATTGT+AGG | + | chr4_2:65060979-65060998 | None:intergenic | 30.0% |
| ! | TTTTGTGTATAGCACTTACA+AGG | + | chr4_2:65061211-65061230 | None:intergenic | 30.0% |
| TTTCTTTCTTGCAATCTTTG+TGG | - | chr4_2:65061453-65061472 | Msa0615600:intron | 30.0% | |
| !!! | CAATGTTTTAGAAACCAAAC+CGG | - | chr4_2:65061661-65061680 | Msa0615600:intron | 30.0% |
| !!! | CAATGTTTTGAAAACCAAAC+TGG | + | chr4_2:65061817-65061836 | None:intergenic | 30.0% |
| ! | TTTGATGGACAATATGCTTA+GGG | + | chr4_2:65062133-65062152 | None:intergenic | 30.0% |
| !! | TTTTGATGGACAATATGCTT+AGG | + | chr4_2:65062134-65062153 | None:intergenic | 30.0% |
| TCCATCAAAAAATTGCATGT+TGG | - | chr4_2:65062144-65062163 | Msa0615600:CDS | 30.0% | |
| !!! | TCCAACATGCAATTTTTTGA+TGG | + | chr4_2:65062148-65062167 | None:intergenic | 30.0% |
| AATGTTGAGTAGAAAACAAC+TGG | - | chr4_2:65062245-65062264 | Msa0615600:intron | 30.0% | |
| !! | AGAAGGCATTCATTATTCTT+GGG | + | chr4_2:65062305-65062324 | None:intergenic | 30.0% |
| !! | AAGAAGGCATTCATTATTCT+TGG | + | chr4_2:65062306-65062325 | None:intergenic | 30.0% |
| TGAGAAATAACATGGAAAGA+AGG | + | chr4_2:65062322-65062341 | None:intergenic | 30.0% | |
| GGAATGGTATTTATACAAGA+TGG | + | chr4_2:65062423-65062442 | None:intergenic | 30.0% | |
| TTCAGAATACACTCAACAAT+GGG | + | chr4_2:65062444-65062463 | None:intergenic | 30.0% | |
| ! | TGTGGCTATACATGATTTTA+AGG | + | chr4_2:65062525-65062544 | None:intergenic | 30.0% |
| TGGAAAGAAACAAAATACTG+TGG | - | chr4_2:65062951-65062970 | Msa0615600:intron | 30.0% | |
| GGAAAGAAACAAAATACTGT+GGG | - | chr4_2:65062952-65062971 | Msa0615600:intron | 30.0% | |
| GCTTCTTAGTAACATCTATA+AGG | - | chr4_2:65062983-65063002 | Msa0615600:intron | 30.0% | |
| CAAGAGTAGTAAAATATTGG+TGG | + | chr4_2:65063162-65063181 | None:intergenic | 30.0% | |
| GGAATGATATATAAGAAAGC+TGG | - | chr4_2:65063337-65063356 | Msa0615600:CDS | 30.0% | |
| ! | CACACATCTATAAAAGTGTA+TGG | - | chr4_2:65063513-65063532 | Msa0615600:CDS | 30.0% |
| ! | AGCATGTATTTGCTAAATGA+AGG | + | chr4_2:65063651-65063670 | None:intergenic | 30.0% |
| GATGTTCATGTTCATGTTCA+TGG | + | chr4_2:65059927-65059946 | None:intergenic | 35.0% | |
| TGAATGAATCACCATGCTTA+TGG | + | chr4_2:65059972-65059991 | None:intergenic | 35.0% | |
| AAGCATGGTGATTCATTCAT+AGG | - | chr4_2:65059973-65059992 | Msa0615600:three_prime_UTR | 35.0% | |
| ! | TTGAAGTCTCTGTTGATAAG+AGG | + | chr4_2:65060093-65060112 | None:intergenic | 35.0% |
| AATGAAAGAGCTTTCACTGT+TGG | - | chr4_2:65060111-65060130 | Msa0615600:three_prime_UTR | 35.0% | |
| ! | ACAAAGTGCTAACATCAAAG+CGG | + | chr4_2:65060166-65060185 | None:intergenic | 35.0% |
| CAAAAACTCACCATCTTCTT+TGG | + | chr4_2:65060241-65060260 | None:intergenic | 35.0% | |
| ! | CAAAGAAGATGGTGAGTTTT+TGG | - | chr4_2:65060239-65060258 | Msa0615600:three_prime_UTR | 35.0% |
| TATTAATCTTGGTCCACTTG+AGG | - | chr4_2:65060347-65060366 | Msa0615600:intron | 35.0% | |
| ! | GATTTGCTTCTTTGTGAATC+TGG | - | chr4_2:65060393-65060412 | Msa0615600:intron | 35.0% |
| TTTGCTTCTTTGTGAATCTG+GGG | - | chr4_2:65060395-65060414 | Msa0615600:intron | 35.0% | |
| GTGTGTGTTTGATATCACAA+TGG | - | chr4_2:65060518-65060537 | Msa0615600:intron | 35.0% | |
| CAAAATACATGATTCGTGGT+GGG | + | chr4_2:65060585-65060604 | None:intergenic | 35.0% | |
| ACAAAATACATGATTCGTGG+TGG | + | chr4_2:65060586-65060605 | None:intergenic | 35.0% | |
| ATTCGATCAATTGTTACGGA+TGG | - | chr4_2:65060877-65060896 | Msa0615600:intron | 35.0% | |
| TATCTGACACCTACAATTTC+AGG | - | chr4_2:65060967-65060986 | Msa0615600:intron | 35.0% | |
| ! | CAGTTTTTGTGCAGATAACT+TGG | - | chr4_2:65061076-65061095 | Msa0615600:intron | 35.0% |
| TACATCATAGATGTATCTGG+TGG | - | chr4_2:65061137-65061156 | Msa0615600:intron | 35.0% | |
| GGTGATAAAATTCCTAGGAA+AGG | - | chr4_2:65061158-65061177 | Msa0615600:intron | 35.0% | |
| GATAAAATTCCTAGGAAAGG+TGG | - | chr4_2:65061161-65061180 | Msa0615600:intron | 35.0% | |
| GCTATACACAAAACTATCTC+TGG | - | chr4_2:65061218-65061237 | Msa0615600:intron | 35.0% | |
| CTAACCTGAGCAAATACAAA+TGG | + | chr4_2:65061414-65061433 | None:intergenic | 35.0% | |
| !! | GTATTTGCTCAGGTTAGTTT+AGG | - | chr4_2:65061417-65061436 | Msa0615600:intron | 35.0% |
| GATGACCCAACAATATTAAC+AGG | + | chr4_2:65061636-65061655 | None:intergenic | 35.0% | |
| !! | CGGTTTGGTTTCTAAAACAT+TGG | + | chr4_2:65061663-65061682 | None:intergenic | 35.0% |
| GAGATTTCCAATTTGATGTC+CGG | + | chr4_2:65061683-65061702 | None:intergenic | 35.0% | |
| GACATCAAATTGGAAATCTC+CGG | - | chr4_2:65061683-65061702 | Msa0615600:intron | 35.0% | |
| ACATCAAATTGGAAATCTCC+GGG | - | chr4_2:65061684-65061703 | Msa0615600:intron | 35.0% | |
| GCTATGGTTCAGTTATATGA+AGG | + | chr4_2:65061762-65061781 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAAACCAAACTGGA+CGG | + | chr4_2:65061813-65061832 | None:intergenic | 35.0% |
| GAACACTTTGAATATTTGGG+AGG | - | chr4_2:65061864-65061883 | Msa0615600:intron | 35.0% | |
| CATGTTGGATTTAGTTGAGT+TGG | - | chr4_2:65062159-65062178 | Msa0615600:CDS | 35.0% | |
| !! | GTTGAGTTGGCATATACATT+AGG | - | chr4_2:65062172-65062191 | Msa0615600:CDS | 35.0% |
| AACAGAGAAGCAAAAAGGAA+AGG | + | chr4_2:65062385-65062404 | None:intergenic | 35.0% | |
| AATACACTCAACAATGGGAA+TGG | + | chr4_2:65062439-65062458 | None:intergenic | 35.0% | |
| CTTCAGAATACACTCAACAA+TGG | + | chr4_2:65062445-65062464 | None:intergenic | 35.0% | |
| GGTCATTCACGTTGTATTAA+TGG | + | chr4_2:65062499-65062518 | None:intergenic | 35.0% | |
| TTGATTGATAGATCGATTGG+TGG | - | chr4_2:65062675-65062694 | Msa0615600:intron | 35.0% | |
| GTGATATAAGGTGAGTGATT+TGG | + | chr4_2:65063052-65063071 | None:intergenic | 35.0% | |
| GTCATGTAAAGAATGCTGTT+AGG | + | chr4_2:65063112-65063131 | None:intergenic | 35.0% | |
| ATCTTTCTGCATCAATGTAC+AGG | - | chr4_2:65063188-65063207 | Msa0615600:CDS | 35.0% | |
| ! | TGAATCATGTTTTACAGGCA+TGG | - | chr4_2:65063241-65063260 | Msa0615600:CDS | 35.0% |
| ! | GAATCATGTTTTACAGGCAT+GGG | - | chr4_2:65063242-65063261 | Msa0615600:CDS | 35.0% |
| AAATGTTGTTGAACTCGGAT+TGG | - | chr4_2:65063306-65063325 | Msa0615600:CDS | 35.0% | |
| GAATGAAAAGACAACAGACT+AGG | + | chr4_2:65063384-65063403 | None:intergenic | 35.0% | |
| ! | ATGACTCATACACACTGATT+AGG | + | chr4_2:65063448-65063467 | None:intergenic | 35.0% |
| TATTTATACCGAATGACCAC+TGG | + | chr4_2:65063485-65063504 | None:intergenic | 35.0% | |
| CAGTAACAACCAATGTCTTC+TGG | - | chr4_2:65059889-65059908 | Msa0615600:three_prime_UTR | 40.0% | |
| TAACAACCAATGTCTTCTGG+AGG | - | chr4_2:65059892-65059911 | Msa0615600:three_prime_UTR | 40.0% | |
| !! | ATAAAGCGTTGCCTGAAGAA+AGG | - | chr4_2:65060268-65060287 | Msa0615600:exon | 40.0% |
| TTGCTTCTTTGTGAATCTGG+GGG | - | chr4_2:65060396-65060415 | Msa0615600:intron | 40.0% | |
| GTTCCTAAAATTGTCGCGTA+TGG | - | chr4_2:65060850-65060869 | Msa0615600:intron | 40.0% | |
| ! | AGTCCATACGCGACAATTTT+AGG | + | chr4_2:65060856-65060875 | None:intergenic | 40.0% |
| ! | CTGGTGGTGATAAAATTCCT+AGG | - | chr4_2:65061153-65061172 | Msa0615600:intron | 40.0% |
| ATTCAGATTCTCTGCAGTCA+GGG | - | chr4_2:65061496-65061515 | Msa0615600:intron | 40.0% | |
| TTGTCCGATCAAAGATCAGA+TGG | - | chr4_2:65061553-65061572 | Msa0615600:intron | 40.0% | |
| CAAGCCATCTGATCTTTGAT+CGG | + | chr4_2:65061560-65061579 | None:intergenic | 40.0% | |
| ! | ACAGGCATTAACTTGGGAAT+TGG | + | chr4_2:65061618-65061637 | None:intergenic | 40.0% |
| AACCAAACCGGACATCAAAT+TGG | - | chr4_2:65061673-65061692 | Msa0615600:intron | 40.0% | |
| TTCCAATTTGATGTCCGGTT+TGG | + | chr4_2:65061678-65061697 | None:intergenic | 40.0% | |
| TTTGAACCGAGATTGAAGTG+CGG | - | chr4_2:65061731-65061750 | Msa0615600:intron | 40.0% | |
| TCAATTGACTGAACTGTGCA+CGG | + | chr4_2:65061789-65061808 | None:intergenic | 40.0% | |
| CTTTGAATATTTGGGAGGAG+CGG | - | chr4_2:65061869-65061888 | Msa0615600:intron | 40.0% | |
| CTTTGCTAATCGATGATTGC+TGG | - | chr4_2:65061918-65061937 | Msa0615600:intron | 40.0% | |
| AGGCATTCATTATTCTTGGG+AGG | + | chr4_2:65062302-65062321 | None:intergenic | 40.0% | |
| AGCTCAACAGAGAAGCAAAA+AGG | + | chr4_2:65062390-65062409 | None:intergenic | 40.0% | |
| !! | CAAAATGCTCAGTGGTTTTG+TGG | + | chr4_2:65062543-65062562 | None:intergenic | 40.0% |
| ! | ATTTTGCCTTGGTATCTGGT+TGG | - | chr4_2:65062557-65062576 | Msa0615600:intron | 40.0% |
| ! | AGTAGAACTGGTTCAGAACA+TGG | - | chr4_2:65062931-65062950 | Msa0615600:intron | 40.0% |
| ! | TTTGAAGCATGTTACCACCT+TGG | - | chr4_2:65063421-65063440 | Msa0615600:CDS | 40.0% |
| ! | ATACACACTGATTAGGTCCA+AGG | + | chr4_2:65063441-65063460 | None:intergenic | 40.0% |
| GTATGGAACTATGGATCACA+TGG | - | chr4_2:65063530-65063549 | Msa0615600:CDS | 40.0% | |
| AACGTGAGACCATGTGCAAT+GGG | + | chr4_2:65059762-65059781 | None:intergenic | 45.0% | |
| AAACGTGAGACCATGTGCAA+TGG | + | chr4_2:65059763-65059782 | None:intergenic | 45.0% | |
| CTCAGTTCTCAGTGTACTTG+AGG | + | chr4_2:65059853-65059872 | None:intergenic | 45.0% | |
| AATCACCATGCTTATGGTCG+TGG | + | chr4_2:65059966-65059985 | None:intergenic | 45.0% | |
| !! | GATTCATTCATAGGCGCTGA+TGG | - | chr4_2:65059982-65060001 | Msa0615600:three_prime_UTR | 45.0% |
| AAAGTGTACCATAGCCACGA+CGG | - | chr4_2:65060006-65060025 | Msa0615600:three_prime_UTR | 45.0% | |
| AAGAATCCGGGAGAGTAGAT+TGG | + | chr4_2:65060054-65060073 | None:intergenic | 45.0% | |
| AGCTCTTCTGCTGAAGAATC+CGG | + | chr4_2:65060067-65060086 | None:intergenic | 45.0% | |
| AGAGCTTTCACTGTTGGCAT+TGG | - | chr4_2:65060117-65060136 | Msa0615600:three_prime_UTR | 45.0% | |
| ACAGCACGTATCCTTTCTTC+AGG | + | chr4_2:65060282-65060301 | None:intergenic | 45.0% | |
| ! | AGGATACGTGCTGTTGAAAC+TGG | - | chr4_2:65060288-65060307 | Msa0615600:CDS | 45.0% |
| ! | ATACGTGCTGTTGAAACTGG+TGG | - | chr4_2:65060291-65060310 | Msa0615600:CDS | 45.0% |
| ! | TACGTGCTGTTGAAACTGGT+GGG | - | chr4_2:65060292-65060311 | Msa0615600:CDS | 45.0% |
| AGATTCGAAAGCTCCTCAAG+TGG | + | chr4_2:65060363-65060382 | None:intergenic | 45.0% | |
| AGATCAGCTTGTGTGATTCC+AGG | + | chr4_2:65061188-65061207 | None:intergenic | 45.0% | |
| ACTGACCTTGCACAAGCAAT+TGG | - | chr4_2:65061336-65061355 | Msa0615600:intron | 45.0% | |
| ACAAGCAATTGGAGCTGACT+TGG | - | chr4_2:65061347-65061366 | Msa0615600:intron | 45.0% | |
| ! | CAAGCAATTGGAGCTGACTT+GGG | - | chr4_2:65061348-65061367 | Msa0615600:intron | 45.0% |
| ACGCTCTTAGGATGAGAGAT+GGG | - | chr4_2:65061385-65061404 | Msa0615600:intron | 45.0% | |
| GCAGAGAATCTGAATCTTGC+TGG | + | chr4_2:65061491-65061510 | None:intergenic | 45.0% | |
| GATTCAGATTCTCTGCAGTC+AGG | - | chr4_2:65061495-65061514 | Msa0615600:intron | 45.0% | |
| CGATCAAAGATCAGATGGCT+TGG | - | chr4_2:65061558-65061577 | Msa0615600:intron | 45.0% | |
| AATTGGAAATCTCCGGGTCA+TGG | - | chr4_2:65061690-65061709 | Msa0615600:intron | 45.0% | |
| AAAGCAGTTGAACCATGACC+CGG | + | chr4_2:65061705-65061724 | None:intergenic | 45.0% | |
| GTTCAACCGCACTTCAATCT+CGG | + | chr4_2:65061740-65061759 | None:intergenic | 45.0% | |
| GTCAATTGAACCGTCCAGTT+TGG | - | chr4_2:65061800-65061819 | Msa0615600:intron | 45.0% | |
| AATATTTGGGAGGAGCGGTA+GGG | - | chr4_2:65061874-65061893 | Msa0615600:intron | 45.0% | |
| TGCTAATCGATGATTGCTGG+AGG | - | chr4_2:65061921-65061940 | Msa0615600:intron | 45.0% | |
| GAGTAGAAAACAACTGGTCC+AGG | - | chr4_2:65062251-65062270 | Msa0615600:intron | 45.0% | |
| ! | AACCACTGAGCATTTTGCCT+TGG | - | chr4_2:65062546-65062565 | Msa0615600:intron | 45.0% |
| TACCAAGGCAAAATGCTCAG+TGG | + | chr4_2:65062551-65062570 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCCTTGGTATC+TGG | - | chr4_2:65062553-65062572 | Msa0615600:intron | 45.0% |
| GCAATTCCAACCAGATACCA+AGG | + | chr4_2:65062566-65062585 | None:intergenic | 45.0% | |
| CAAAATACTGTGGGCGAGTT+AGG | - | chr4_2:65062961-65062980 | Msa0615600:intron | 45.0% | |
| GTACAGGTGAAGCACAATGT+TGG | - | chr4_2:65063204-65063223 | Msa0615600:CDS | 45.0% | |
| GAAGCACAATGTTGGAGTAG+AGG | - | chr4_2:65063212-65063231 | Msa0615600:CDS | 45.0% | |
| !! | TTGAACTCGGATTGGTCAAC+AGG | - | chr4_2:65063314-65063333 | Msa0615600:CDS | 45.0% |
| !! | TGAACTCGGATTGGTCAACA+GGG | - | chr4_2:65063315-65063334 | Msa0615600:CDS | 45.0% |
| ATCTATCGCCAGTGGTCATT+CGG | - | chr4_2:65063474-65063493 | Msa0615600:CDS | 45.0% | |
| AGGTATCTCGAGATGAGGTG+TGG | + | chr4_2:65059827-65059846 | None:intergenic | 50.0% | |
| TCTCAGTGTACTTGAGGACG+AGG | + | chr4_2:65059847-65059866 | None:intergenic | 50.0% | |
| TGATCGCCTCCAGAAGACAT+TGG | + | chr4_2:65059901-65059920 | None:intergenic | 50.0% | |
| !! | TAGATTGGTTCGTGGGAGTG+TGG | + | chr4_2:65060039-65060058 | None:intergenic | 50.0% |
| !! | GGGAGAGTAGATTGGTTCGT+GGG | + | chr4_2:65060046-65060065 | None:intergenic | 50.0% |
| CACGAACCAATCTACTCTCC+CGG | - | chr4_2:65060045-65060064 | Msa0615600:three_prime_UTR | 50.0% | |
| GCTCTTCTGCTGAAGAATCC+GGG | + | chr4_2:65060066-65060085 | None:intergenic | 50.0% | |
| ! | GCTTTCACTGTTGGCATTGG+TGG | - | chr4_2:65060120-65060139 | Msa0615600:three_prime_UTR | 50.0% |
| TCCTCATGCTGCTATTCGTG+AGG | - | chr4_2:65060317-65060336 | Msa0615600:CDS | 50.0% | |
| TCCTCACGAATAGCAGCATG+AGG | + | chr4_2:65060321-65060340 | None:intergenic | 50.0% | |
| CTTCTTTGTGAATCTGGGGG+AGG | - | chr4_2:65060399-65060418 | Msa0615600:intron | 50.0% | |
| ACTTGGCTGCCAATTTCAGC+AGG | - | chr4_2:65061093-65061112 | Msa0615600:intron | 50.0% | |
| CTTGGCTGCCAATTTCAGCA+GGG | - | chr4_2:65061094-65061113 | Msa0615600:intron | 50.0% | |
| TGCCAATTTCAGCAGGGAAC+TGG | - | chr4_2:65061100-65061119 | Msa0615600:intron | 50.0% | |
| AGCCAGTTCCCTGCTGAAAT+TGG | + | chr4_2:65061105-65061124 | None:intergenic | 50.0% | |
| ATTCCTAGGAAAGGTGGTCC+TGG | - | chr4_2:65061167-65061186 | Msa0615600:intron | 50.0% | |
| ATTCCAGGACCACCTTTCCT+AGG | + | chr4_2:65061173-65061192 | None:intergenic | 50.0% | |
| CAGCTCCAATTGCTTGTGCA+AGG | + | chr4_2:65061344-65061363 | None:intergenic | 50.0% | |
| GACGCTCTTAGGATGAGAGA+TGG | - | chr4_2:65061384-65061403 | Msa0615600:intron | 50.0% | |
| CGCTCTTAGGATGAGAGATG+GGG | - | chr4_2:65061386-65061405 | Msa0615600:intron | 50.0% | |
| GCTCTTAGGATGAGAGATGG+GGG | - | chr4_2:65061387-65061406 | Msa0615600:intron | 50.0% | |
| CTCTTAGGATGAGAGATGGG+GGG | - | chr4_2:65061388-65061407 | Msa0615600:intron | 50.0% | |
| GGGGCCATTTGTATTTGCTC+AGG | - | chr4_2:65061407-65061426 | Msa0615600:intron | 50.0% | |
| ! | AGATGGCTTGGATCGCTTGA+TGG | - | chr4_2:65061570-65061589 | Msa0615600:intron | 50.0% |
| GAATTGGATCGCCTGAAGTC+GGG | + | chr4_2:65061602-65061621 | None:intergenic | 50.0% | |
| GGAATTGGATCGCCTGAAGT+CGG | + | chr4_2:65061603-65061622 | None:intergenic | 50.0% | |
| GAATATTTGGGAGGAGCGGT+AGG | - | chr4_2:65061873-65061892 | Msa0615600:intron | 50.0% | |
| !! | GAACTCGGATTGGTCAACAG+GGG | - | chr4_2:65063316-65063335 | Msa0615600:CDS | 50.0% |
| ! | CACACTGATTAGGTCCAAGG+TGG | + | chr4_2:65063438-65063457 | None:intergenic | 50.0% |
| ATGCGTCTATCTATCGCCAG+TGG | - | chr4_2:65063466-65063485 | Msa0615600:CDS | 50.0% | |
| ! | GGACGAGGTATCTCGAGATG+AGG | + | chr4_2:65059832-65059851 | None:intergenic | 55.0% |
| TATGGTCGTGGTCGTGGTCA+TGG | + | chr4_2:65059954-65059973 | None:intergenic | 55.0% | |
| CATGCTTATGGTCGTGGTCG+TGG | + | chr4_2:65059960-65059979 | None:intergenic | 55.0% | |
| CACGACCACGACCATAAGCA+TGG | - | chr4_2:65059958-65059977 | Msa0615600:three_prime_UTR | 55.0% | |
| !! | CGGGAGAGTAGATTGGTTCG+TGG | + | chr4_2:65060047-65060066 | None:intergenic | 55.0% |
| !! | GTTGGCATTGGTGGACCTGT+CGG | - | chr4_2:65060129-65060148 | Msa0615600:three_prime_UTR | 55.0% |
| ! | ATTGGTGGACCTGTCGGTAC+AGG | - | chr4_2:65060135-65060154 | Msa0615600:three_prime_UTR | 55.0% |
| !! | CTGACTTGGGTGTCATGCAG+CGG | - | chr4_2:65061361-65061380 | Msa0615600:intron | 55.0% |
| ! | TGACTTGGGTGTCATGCAGC+GGG | - | chr4_2:65061362-65061381 | Msa0615600:intron | 55.0% |
| AGTCACGTAGCCAGCACGTA+AGG | - | chr4_2:65061528-65061547 | Msa0615600:intron | 55.0% | |
| TCGGACAACTCCTTACGTGC+TGG | + | chr4_2:65061541-65061560 | None:intergenic | 55.0% | |
| ! | TGGCTTGGATCGCTTGATGG+AGG | - | chr4_2:65061573-65061592 | Msa0615600:intron | 55.0% |
| GGCTTGGATCGCTTGATGGA+GGG | - | chr4_2:65061574-65061593 | Msa0615600:intron | 55.0% | |
| AACTGTGCACGGCACTGCTA+TGG | + | chr4_2:65061778-65061797 | None:intergenic | 55.0% | |
| AGGGCAGCTGCTTAGCTGTT+TGG | + | chr4_2:65062114-65062133 | None:intergenic | 55.0% | |
| TCAACGGCGTTTCTTCCCTG+TGG | + | chr4_2:65063274-65063293 | None:intergenic | 55.0% | |
| GAAAGCTGGTAGCTCGAGTG+AGG | - | chr4_2:65063351-65063370 | Msa0615600:CDS | 55.0% | |
| GTGCAAGACCGTCGTGGCTA+TGG | + | chr4_2:65060017-65060036 | None:intergenic | 60.0% | |
| AGTGTGGTGCAAGACCGTCG+TGG | + | chr4_2:65060023-65060042 | None:intergenic | 60.0% | |
| !! | GCGGTTTTGCCTGTACCGAC+AGG | + | chr4_2:65060147-65060166 | None:intergenic | 60.0% |
| TCATGCAGCGGGACGCTCTT+AGG | - | chr4_2:65061373-65061392 | Msa0615600:intron | 60.0% | |
| !! | GATGGAGGGTACCCGACTTC+AGG | - | chr4_2:65061588-65061607 | Msa0615600:intron | 60.0% |
| AGGCATGGGAAGCAGCCACA+GGG | - | chr4_2:65063256-65063275 | Msa0615600:CDS | 60.0% | |
| CTGGTAGCTCGAGTGAGGAG+TGG | - | chr4_2:65063356-65063375 | Msa0615600:CDS | 60.0% | |
| CAGGCATGGGAAGCAGCCAC+AGG | - | chr4_2:65063255-65063274 | Msa0615600:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65059754 | 65063818 | 65059754 | ID=Msa0615600;Name=Msa0615600 |
| chr4_2 | mRNA | 65059754 | 65063818 | 65059754 | ID=Msa0615600-mRNA-1;Parent=Msa0615600;Name=Msa0615600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=147|1|1|1|1|1|4|525|276 |
| chr4_2 | exon | 65059754 | 65060362 | 65059754 | ID=Msa0615600-mRNA-1:exon:18354;Parent=Msa0615600-mRNA-1 |
| chr4_2 | exon | 65062144 | 65062248 | 65062144 | ID=Msa0615600-mRNA-1:exon:18353;Parent=Msa0615600-mRNA-1 |
| chr4_2 | exon | 65062361 | 65062482 | 65062361 | ID=Msa0615600-mRNA-1:exon:18352;Parent=Msa0615600-mRNA-1 |
| chr4_2 | exon | 65063152 | 65063818 | 65063152 | ID=Msa0615600-mRNA-1:exon:18351;Parent=Msa0615600-mRNA-1 |
| chr4_2 | five_prime_UTR | 65063672 | 65063818 | 65063672 | ID=Msa0615600-mRNA-1:five_prime_utr;Parent=Msa0615600-mRNA-1 |
| chr4_2 | CDS | 65063152 | 65063671 | 65063152 | ID=Msa0615600-mRNA-1:cds;Parent=Msa0615600-mRNA-1 |
| chr4_2 | CDS | 65062361 | 65062482 | 65062361 | ID=Msa0615600-mRNA-1:cds;Parent=Msa0615600-mRNA-1 |
| chr4_2 | CDS | 65062144 | 65062248 | 65062144 | ID=Msa0615600-mRNA-1:cds;Parent=Msa0615600-mRNA-1 |
| chr4_2 | CDS | 65060279 | 65060362 | 65060279 | ID=Msa0615600-mRNA-1:cds;Parent=Msa0615600-mRNA-1 |
| chr4_2 | three_prime_UTR | 65059754 | 65060278 | 65059754 | ID=Msa0615600-mRNA-1:three_prime_utr;Parent=Msa0615600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
