Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341600 | RHN49564.1 | 96.567 | 233 | 7 | 1 | 1 | 232 | 75 | 307 | 2.15e-161 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341600 | sp|Q9M160|Y4095_ARATH | 29.097 | 299 | 123 | 16 | 1 | 221 | 1 | 288 | 3.77e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341600 | A0A396HCP9 | 96.567 | 233 | 7 | 1 | 1 | 232 | 75 | 307 | 1.02e-161 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0783530 | Msa1341600 | 0.802422 | 5.652899e-49 | -8.615850e-47 |
| Msa1341600 | Msa1454810 | 0.823744 | 1.174517e-53 | -8.615850e-47 |
| Msa0338340 | Msa1341600 | 0.801366 | 9.314508e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341600 | MtrunA17_Chr7g0275851 | 96.567 | 233 | 7 | 1 | 1 | 232 | 75 | 307 | 1.97e-165 | 458 |
| Msa1341600 | MtrunA17_Chr8g0346691 | 40.000 | 215 | 90 | 9 | 5 | 205 | 4 | 193 | 6.73e-32 | 115 |
| Msa1341600 | MtrunA17_Chr3g0126981 | 33.333 | 186 | 80 | 8 | 43 | 221 | 9 | 157 | 1.62e-14 | 68.9 |
| Msa1341600 | MtrunA17_Chr1g0146921 | 33.668 | 199 | 86 | 10 | 42 | 226 | 44 | 210 | 2.24e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341600 | AT4G27810.1 | 28.879 | 232 | 92 | 11 | 8 | 221 | 9 | 185 | 9.62e-13 | 65.1 |
| Msa1341600 | AT4G00950.1 | 29.097 | 299 | 123 | 16 | 1 | 221 | 1 | 288 | 3.84e-12 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAAGCCTTGGCTTTCC+TGG | 0.231150 | tig0004829:-163995 | None:intergenic |
| ACAGTGGTTGGTTTGGTTCT+TGG | 0.271528 | tig0004829:+164242 | Msa1341600:CDS |
| GTCACCGTCCCCGTTCTCTC+TGG | 0.275715 | tig0004829:-163923 | None:intergenic |
| TCCATCTTCTTCTACTGATA+AGG | 0.358897 | tig0004829:+164312 | Msa1341600:CDS |
| CTCCAAACACTTGTCACTAC+TGG | 0.386183 | tig0004829:-164041 | None:intergenic |
| TTGTCTTCAATTCTAAAAGA+TGG | 0.393325 | tig0004829:-164145 | None:intergenic |
| TCTTCTACTGATAAGGATAC+TGG | 0.403705 | tig0004829:+164319 | Msa1341600:CDS |
| CCCCAGTAGTGACAAGTGTT+TGG | 0.412430 | tig0004829:+164039 | Msa1341600:CDS |
| TCACCGTCCCCGTTCTCTCT+GGG | 0.413186 | tig0004829:-163922 | None:intergenic |
| AAATCTATTCTCAAAGCTTA+AGG | 0.419097 | tig0004829:-164602 | None:intergenic |
| AAAAGTTGAAGAAGAAAGAT+GGG | 0.421291 | tig0004829:+164574 | Msa1341600:CDS |
| AAAAGAGACAGTGGTTGGTT+TGG | 0.429365 | tig0004829:+164235 | Msa1341600:CDS |
| CATGAGGACCCTGCTGCAAA+AGG | 0.430448 | tig0004829:-164099 | None:intergenic |
| ATGGAATCCCCAGAGAGAAC+GGG | 0.434261 | tig0004829:+163914 | Msa1341600:CDS |
| GTTGTTGTCTGCAATGTCAA+TGG | 0.436341 | tig0004829:-164344 | None:intergenic |
| AACAAGATGATGAAACGTTC+TGG | 0.436883 | tig0004829:+164364 | Msa1341600:CDS |
| GGTTCTTGTTCCCAACGAAA+TGG | 0.450088 | tig0004829:-163974 | None:intergenic |
| AATGAAAATTCAAATGCAAA+TGG | 0.451066 | tig0004829:+163895 | Msa1341600:CDS |
| ATGTAACCAGCAACAGATTC+CGG | 0.462310 | tig0004829:+164119 | Msa1341600:CDS |
| TGGAGACCGGAATCTGTTGC+TGG | 0.464392 | tig0004829:-164125 | None:intergenic |
| AGTACTGATAGAGGCTTACT+TGG | 0.468153 | tig0004829:+164190 | Msa1341600:CDS |
| TCCAAACACTTGTCACTACT+GGG | 0.470671 | tig0004829:-164040 | None:intergenic |
| AGGTTCAGTACCATTTCGTT+GGG | 0.482945 | tig0004829:+163964 | Msa1341600:CDS |
| CTGCTGCAAAAGGGTGGGTG+AGG | 0.488417 | tig0004829:-164089 | None:intergenic |
| TCTTCGTTCAGTACTGATAG+AGG | 0.489913 | tig0004829:+164181 | Msa1341600:CDS |
| GTGGTTGGTTTGGTTCTTGG+AGG | 0.490179 | tig0004829:+164245 | Msa1341600:CDS |
| CAGGTTCAGTACCATTTCGT+TGG | 0.491351 | tig0004829:+163963 | Msa1341600:CDS |
| CCACCTGCTTCATCCCCTTA+CGG | 0.496647 | tig0004829:-164530 | None:intergenic |
| ACAAGTGCATTGCAAAGCCT+TGG | 0.497372 | tig0004829:-164004 | None:intergenic |
| TTGGTGAGACAGAGAACAAA+GGG | 0.503937 | tig0004829:-163871 | None:intergenic |
| ACAAGATGATGAAACGTTCT+GGG | 0.513788 | tig0004829:+164365 | Msa1341600:CDS |
| ATTGAAGACAACAATTGCTA+TGG | 0.521003 | tig0004829:+164157 | Msa1341600:CDS |
| ACAGAGAACAAAGGGAGCCT+TGG | 0.527461 | tig0004829:-163863 | None:intergenic |
| GGGTTGAAGCTTACCCAGGT+AGG | 0.527855 | tig0004829:-164421 | None:intergenic |
| ATCATGGCAAGTCCCCTACC+TGG | 0.532410 | tig0004829:+164407 | Msa1341600:CDS |
| TTTCGTTGGGAACAAGAACC+AGG | 0.535652 | tig0004829:+163977 | Msa1341600:CDS |
| GTCACTACTGGGGTTAGTGA+AGG | 0.542508 | tig0004829:-164029 | None:intergenic |
| CATCCGTAAGGGGATGAAGC+AGG | 0.544671 | tig0004829:+164527 | Msa1341600:CDS |
| GGTTGAAGCTTACCCAGGTA+GGG | 0.548146 | tig0004829:-164420 | None:intergenic |
| ACTCCACCACTTCAAACCTC+AGG | 0.551998 | tig0004829:+163944 | Msa1341600:CDS |
| TCCTTATCAGTAGAAGAAGA+TGG | 0.552504 | tig0004829:-164313 | None:intergenic |
| CAATTCTAAAAGATGGAGAC+CGG | 0.554957 | tig0004829:-164138 | None:intergenic |
| ATGAGGACCCTGCTGCAAAA+GGG | 0.555472 | tig0004829:-164098 | None:intergenic |
| CTGCTTCATCCCCTTACGGA+TGG | 0.555930 | tig0004829:-164526 | None:intergenic |
| TTATCAAAAGAGACAGTGGT+TGG | 0.561874 | tig0004829:+164230 | Msa1341600:CDS |
| TCTTCTAGCCTCTCACATCA+TGG | 0.562272 | tig0004829:+164391 | Msa1341600:CDS |
| AGCAGGTGGTTACACTTCCA+TGG | 0.565557 | tig0004829:+164544 | Msa1341600:CDS |
| TTTGCAGACAACCATCCGTA+AGG | 0.573822 | tig0004829:+164515 | Msa1341600:intron |
| AATGGAATCCCCAGAGAGAA+CGG | 0.582290 | tig0004829:+163913 | Msa1341600:CDS |
| TCACTACTGGGGTTAGTGAA+GGG | 0.584112 | tig0004829:-164028 | None:intergenic |
| TTGCAGACAACCATCCGTAA+GGG | 0.587556 | tig0004829:+164516 | Msa1341600:intron |
| ATCCCCAGAGAGAACGGGGA+CGG | 0.590463 | tig0004829:+163919 | Msa1341600:CDS |
| AGTGTTTGGAGCTTCCTCCA+AGG | 0.599363 | tig0004829:+164053 | Msa1341600:CDS |
| CACCGTCCCCGTTCTCTCTG+GGG | 0.601477 | tig0004829:-163921 | None:intergenic |
| TGCTGCAAAAGGGTGGGTGA+GGG | 0.606609 | tig0004829:-164088 | None:intergenic |
| GAGGGTACTACTAACAACCT+TGG | 0.608997 | tig0004829:-164070 | None:intergenic |
| GGTACTACTAACAACCTTGG+AGG | 0.615771 | tig0004829:-164067 | None:intergenic |
| GTTGAAGCTTACCCAGGTAG+GGG | 0.616247 | tig0004829:-164419 | None:intergenic |
| GAACCTGAGGTTTGAAGTGG+TGG | 0.619285 | tig0004829:-163947 | None:intergenic |
| ATTCTTATCAAAAGAGACAG+TGG | 0.624937 | tig0004829:+164226 | Msa1341600:CDS |
| TCATGGCAAGTCCCCTACCT+GGG | 0.627898 | tig0004829:+164408 | Msa1341600:CDS |
| AACAAGAACCAGGAAAGCCA+AGG | 0.628999 | tig0004829:+163987 | Msa1341600:CDS |
| TGCAGACAACCATCCGTAAG+GGG | 0.634249 | tig0004829:+164517 | Msa1341600:intron |
| TTGAAGAAGAAAGATGGGAG+TGG | 0.637709 | tig0004829:+164579 | Msa1341600:CDS |
| AGCAAGAGAGCAGCATACCA+AGG | 0.639698 | tig0004829:+163846 | Msa1341600:CDS |
| AGGACCCTGCTGCAAAAGGG+TGG | 0.643526 | tig0004829:-164095 | None:intergenic |
| AAAAGAGAACAGGTCAGTGG+TGG | 0.644351 | tig0004829:+164277 | Msa1341600:CDS |
| AATCTGTTGCTGGTTACATG+AGG | 0.646820 | tig0004829:-164115 | None:intergenic |
| TGGAATCCCCAGAGAGAACG+GGG | 0.647798 | tig0004829:+163915 | Msa1341600:CDS |
| GGGACTTGCCATGATGTGAG+AGG | 0.660529 | tig0004829:-164399 | None:intergenic |
| GTCAAAAGAGAACAGGTCAG+TGG | 0.663754 | tig0004829:+164274 | Msa1341600:CDS |
| ACGAAATGGTACTGAACCTG+AGG | 0.668546 | tig0004829:-163960 | None:intergenic |
| ATTGGTGAGACAGAGAACAA+AGG | 0.669249 | tig0004829:-163872 | None:intergenic |
| TAGAAGAAGATGGAAAGACA+TGG | 0.687112 | tig0004829:-164303 | None:intergenic |
| CCGTAAGGGGATGAAGCAGG+TGG | 0.695960 | tig0004829:+164530 | Msa1341600:CDS |
| GGACCCTGCTGCAAAAGGGT+GGG | 0.699332 | tig0004829:-164094 | None:intergenic |
| ACTGAACCTGAGGTTTGAAG+TGG | 0.699731 | tig0004829:-163950 | None:intergenic |
| CCAAACACTTGTCACTACTG+GGG | 0.720868 | tig0004829:-164039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATTAAAATGCAAA+TGG | + | tig0004829:164477-164496 | Msa1341600:intron | 10.0% |
| !! | AATTATTATTAAAATGCAAA+TGG | + | tig0004829:164477-164496 | Msa1341600:intron | 10.0% |
| !!! | TGCATTTGAATTTTCATTAT+TGG | - | tig0004829:163893-163912 | None:intergenic | 20.0% |
| !! | AATGAAAATTCAAATGCAAA+TGG | + | tig0004829:163895-163914 | Msa1341600:CDS | 20.0% |
| !!! | TGCATTTGAATTTTCATTAT+TGG | - | tig0004829:163893-163912 | None:intergenic | 20.0% |
| !! | AATGAAAATTCAAATGCAAA+TGG | + | tig0004829:163895-163914 | Msa1341600:CDS | 20.0% |
| !! | TTGTCTTCAATTCTAAAAGA+TGG | - | tig0004829:164148-164167 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAAGAAGAAAGA+TGG | + | tig0004829:164573-164592 | Msa1341600:CDS | 25.0% |
| ! | AAAAGTTGAAGAAGAAAGAT+GGG | + | tig0004829:164574-164593 | Msa1341600:CDS | 25.0% |
| !! | TTGTCTTCAATTCTAAAAGA+TGG | - | tig0004829:164148-164167 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAAGAAGAAAGA+TGG | + | tig0004829:164573-164592 | Msa1341600:CDS | 25.0% |
| ! | AAAAGTTGAAGAAGAAAGAT+GGG | + | tig0004829:164574-164593 | Msa1341600:CDS | 25.0% |
| ATTGAAGACAACAATTGCTA+TGG | + | tig0004829:164157-164176 | Msa1341600:CDS | 30.0% | |
| ATTCTTATCAAAAGAGACAG+TGG | + | tig0004829:164226-164245 | Msa1341600:CDS | 30.0% | |
| GAAAAATGTCAAAAGAGAAC+AGG | + | tig0004829:164267-164286 | Msa1341600:CDS | 30.0% | |
| TTCCACACAGAATGAAAAAA+GGG | - | tig0004829:164444-164463 | None:intergenic | 30.0% | |
| ATTCCACACAGAATGAAAAA+AGG | - | tig0004829:164445-164464 | None:intergenic | 30.0% | |
| ATTGAAGACAACAATTGCTA+TGG | + | tig0004829:164157-164176 | Msa1341600:CDS | 30.0% | |
| ATTCTTATCAAAAGAGACAG+TGG | + | tig0004829:164226-164245 | Msa1341600:CDS | 30.0% | |
| GAAAAATGTCAAAAGAGAAC+AGG | + | tig0004829:164267-164286 | Msa1341600:CDS | 30.0% | |
| TTCCACACAGAATGAAAAAA+GGG | - | tig0004829:164444-164463 | None:intergenic | 30.0% | |
| ATTCCACACAGAATGAAAAA+AGG | - | tig0004829:164445-164464 | None:intergenic | 30.0% | |
| ! | CAATTCTAAAAGATGGAGAC+CGG | - | tig0004829:164141-164160 | None:intergenic | 35.0% |
| TTATCAAAAGAGACAGTGGT+TGG | + | tig0004829:164230-164249 | Msa1341600:CDS | 35.0% | |
| TAGAAGAAGATGGAAAGACA+TGG | - | tig0004829:164306-164325 | None:intergenic | 35.0% | |
| TCCATCTTCTTCTACTGATA+AGG | + | tig0004829:164312-164331 | Msa1341600:CDS | 35.0% | |
| TCCTTATCAGTAGAAGAAGA+TGG | - | tig0004829:164316-164335 | None:intergenic | 35.0% | |
| TCTTCTACTGATAAGGATAC+TGG | + | tig0004829:164319-164338 | Msa1341600:CDS | 35.0% | |
| AACAAGATGATGAAACGTTC+TGG | + | tig0004829:164364-164383 | Msa1341600:CDS | 35.0% | |
| ACAAGATGATGAAACGTTCT+GGG | + | tig0004829:164365-164384 | Msa1341600:CDS | 35.0% | |
| !!! | AACCCTTTTTTCATTCTGTG+TGG | + | tig0004829:164439-164458 | Msa1341600:intron | 35.0% |
| ! | TTCAACTTTTTGCTTCTCCA+TGG | - | tig0004829:164564-164583 | None:intergenic | 35.0% |
| ! | CAATTCTAAAAGATGGAGAC+CGG | - | tig0004829:164141-164160 | None:intergenic | 35.0% |
| TTATCAAAAGAGACAGTGGT+TGG | + | tig0004829:164230-164249 | Msa1341600:CDS | 35.0% | |
| TAGAAGAAGATGGAAAGACA+TGG | - | tig0004829:164306-164325 | None:intergenic | 35.0% | |
| TCCATCTTCTTCTACTGATA+AGG | + | tig0004829:164312-164331 | Msa1341600:CDS | 35.0% | |
| TCCTTATCAGTAGAAGAAGA+TGG | - | tig0004829:164316-164335 | None:intergenic | 35.0% | |
| TCTTCTACTGATAAGGATAC+TGG | + | tig0004829:164319-164338 | Msa1341600:CDS | 35.0% | |
| AACAAGATGATGAAACGTTC+TGG | + | tig0004829:164364-164383 | Msa1341600:CDS | 35.0% | |
| ACAAGATGATGAAACGTTCT+GGG | + | tig0004829:164365-164384 | Msa1341600:CDS | 35.0% | |
| !!! | AACCCTTTTTTCATTCTGTG+TGG | + | tig0004829:164439-164458 | Msa1341600:intron | 35.0% |
| ! | TTCAACTTTTTGCTTCTCCA+TGG | - | tig0004829:164564-164583 | None:intergenic | 35.0% |
| TTGGTGAGACAGAGAACAAA+GGG | - | tig0004829:163874-163893 | None:intergenic | 40.0% | |
| ATTGGTGAGACAGAGAACAA+AGG | - | tig0004829:163875-163894 | None:intergenic | 40.0% | |
| AGGTTCAGTACCATTTCGTT+GGG | + | tig0004829:163964-163983 | Msa1341600:CDS | 40.0% | |
| TCCAAACACTTGTCACTACT+GGG | - | tig0004829:164043-164062 | None:intergenic | 40.0% | |
| ! | AATCTGTTGCTGGTTACATG+AGG | - | tig0004829:164118-164137 | None:intergenic | 40.0% |
| ATGTAACCAGCAACAGATTC+CGG | + | tig0004829:164119-164138 | Msa1341600:CDS | 40.0% | |
| !! | TCTTCGTTCAGTACTGATAG+AGG | + | tig0004829:164181-164200 | Msa1341600:CDS | 40.0% |
| !! | AGTACTGATAGAGGCTTACT+TGG | + | tig0004829:164190-164209 | Msa1341600:CDS | 40.0% |
| ! | AAAAGAGACAGTGGTTGGTT+TGG | + | tig0004829:164235-164254 | Msa1341600:CDS | 40.0% |
| GTTGTTGTCTGCAATGTCAA+TGG | - | tig0004829:164347-164366 | None:intergenic | 40.0% | |
| TTGAAGAAGAAAGATGGGAG+TGG | + | tig0004829:164579-164598 | Msa1341600:CDS | 40.0% | |
| TTGGTGAGACAGAGAACAAA+GGG | - | tig0004829:163874-163893 | None:intergenic | 40.0% | |
| ATTGGTGAGACAGAGAACAA+AGG | - | tig0004829:163875-163894 | None:intergenic | 40.0% | |
| AGGTTCAGTACCATTTCGTT+GGG | + | tig0004829:163964-163983 | Msa1341600:CDS | 40.0% | |
| TCCAAACACTTGTCACTACT+GGG | - | tig0004829:164043-164062 | None:intergenic | 40.0% | |
| ! | AATCTGTTGCTGGTTACATG+AGG | - | tig0004829:164118-164137 | None:intergenic | 40.0% |
| ATGTAACCAGCAACAGATTC+CGG | + | tig0004829:164119-164138 | Msa1341600:CDS | 40.0% | |
| !! | TCTTCGTTCAGTACTGATAG+AGG | + | tig0004829:164181-164200 | Msa1341600:CDS | 40.0% |
| !! | AGTACTGATAGAGGCTTACT+TGG | + | tig0004829:164190-164209 | Msa1341600:CDS | 40.0% |
| ! | AAAAGAGACAGTGGTTGGTT+TGG | + | tig0004829:164235-164254 | Msa1341600:CDS | 40.0% |
| GTTGTTGTCTGCAATGTCAA+TGG | - | tig0004829:164347-164366 | None:intergenic | 40.0% | |
| TTGAAGAAGAAAGATGGGAG+TGG | + | tig0004829:164579-164598 | Msa1341600:CDS | 40.0% | |
| AATGGAATCCCCAGAGAGAA+CGG | + | tig0004829:163913-163932 | Msa1341600:CDS | 45.0% | |
| ACTGAACCTGAGGTTTGAAG+TGG | - | tig0004829:163953-163972 | None:intergenic | 45.0% | |
| ! | ACGAAATGGTACTGAACCTG+AGG | - | tig0004829:163963-163982 | None:intergenic | 45.0% |
| CAGGTTCAGTACCATTTCGT+TGG | + | tig0004829:163963-163982 | Msa1341600:CDS | 45.0% | |
| GGTTCTTGTTCCCAACGAAA+TGG | - | tig0004829:163977-163996 | None:intergenic | 45.0% | |
| TTTCGTTGGGAACAAGAACC+AGG | + | tig0004829:163977-163996 | Msa1341600:CDS | 45.0% | |
| AACAAGAACCAGGAAAGCCA+AGG | + | tig0004829:163987-164006 | Msa1341600:CDS | 45.0% | |
| ACAAGTGCATTGCAAAGCCT+TGG | - | tig0004829:164007-164026 | None:intergenic | 45.0% | |
| ! | TCACTACTGGGGTTAGTGAA+GGG | - | tig0004829:164031-164050 | None:intergenic | 45.0% |
| CCAAACACTTGTCACTACTG+GGG | - | tig0004829:164042-164061 | None:intergenic | 45.0% | |
| CTCCAAACACTTGTCACTAC+TGG | - | tig0004829:164044-164063 | None:intergenic | 45.0% | |
| GGTACTACTAACAACCTTGG+AGG | - | tig0004829:164070-164089 | None:intergenic | 45.0% | |
| !! | GAGGGTACTACTAACAACCT+TGG | - | tig0004829:164073-164092 | None:intergenic | 45.0% |
| !! | ACAGTGGTTGGTTTGGTTCT+TGG | + | tig0004829:164242-164261 | Msa1341600:CDS | 45.0% |
| GTCAAAAGAGAACAGGTCAG+TGG | + | tig0004829:164274-164293 | Msa1341600:CDS | 45.0% | |
| AAAAGAGAACAGGTCAGTGG+TGG | + | tig0004829:164277-164296 | Msa1341600:CDS | 45.0% | |
| TCTTCTAGCCTCTCACATCA+TGG | + | tig0004829:164391-164410 | Msa1341600:CDS | 45.0% | |
| AAAAGGGTTGAAGCTTACCC+AGG | - | tig0004829:164428-164447 | None:intergenic | 45.0% | |
| TTTGCAGACAACCATCCGTA+AGG | + | tig0004829:164515-164534 | Msa1341600:intron | 45.0% | |
| TTGCAGACAACCATCCGTAA+GGG | + | tig0004829:164516-164535 | Msa1341600:intron | 45.0% | |
| AATGGAATCCCCAGAGAGAA+CGG | + | tig0004829:163913-163932 | Msa1341600:CDS | 45.0% | |
| ACTGAACCTGAGGTTTGAAG+TGG | - | tig0004829:163953-163972 | None:intergenic | 45.0% | |
| ! | ACGAAATGGTACTGAACCTG+AGG | - | tig0004829:163963-163982 | None:intergenic | 45.0% |
| CAGGTTCAGTACCATTTCGT+TGG | + | tig0004829:163963-163982 | Msa1341600:CDS | 45.0% | |
| GGTTCTTGTTCCCAACGAAA+TGG | - | tig0004829:163977-163996 | None:intergenic | 45.0% | |
| TTTCGTTGGGAACAAGAACC+AGG | + | tig0004829:163977-163996 | Msa1341600:CDS | 45.0% | |
| AACAAGAACCAGGAAAGCCA+AGG | + | tig0004829:163987-164006 | Msa1341600:CDS | 45.0% | |
| ACAAGTGCATTGCAAAGCCT+TGG | - | tig0004829:164007-164026 | None:intergenic | 45.0% | |
| ! | TCACTACTGGGGTTAGTGAA+GGG | - | tig0004829:164031-164050 | None:intergenic | 45.0% |
| CCAAACACTTGTCACTACTG+GGG | - | tig0004829:164042-164061 | None:intergenic | 45.0% | |
| CTCCAAACACTTGTCACTAC+TGG | - | tig0004829:164044-164063 | None:intergenic | 45.0% | |
| GGTACTACTAACAACCTTGG+AGG | - | tig0004829:164070-164089 | None:intergenic | 45.0% | |
| !! | GAGGGTACTACTAACAACCT+TGG | - | tig0004829:164073-164092 | None:intergenic | 45.0% |
| !! | ACAGTGGTTGGTTTGGTTCT+TGG | + | tig0004829:164242-164261 | Msa1341600:CDS | 45.0% |
| GTCAAAAGAGAACAGGTCAG+TGG | + | tig0004829:164274-164293 | Msa1341600:CDS | 45.0% | |
| AAAAGAGAACAGGTCAGTGG+TGG | + | tig0004829:164277-164296 | Msa1341600:CDS | 45.0% | |
| TCTTCTAGCCTCTCACATCA+TGG | + | tig0004829:164391-164410 | Msa1341600:CDS | 45.0% | |
| AAAAGGGTTGAAGCTTACCC+AGG | - | tig0004829:164428-164447 | None:intergenic | 45.0% | |
| TTTGCAGACAACCATCCGTA+AGG | + | tig0004829:164515-164534 | Msa1341600:intron | 45.0% | |
| TTGCAGACAACCATCCGTAA+GGG | + | tig0004829:164516-164535 | Msa1341600:intron | 45.0% | |
| AGCAAGAGAGCAGCATACCA+AGG | + | tig0004829:163846-163865 | Msa1341600:CDS | 50.0% | |
| ACAGAGAACAAAGGGAGCCT+TGG | - | tig0004829:163866-163885 | None:intergenic | 50.0% | |
| ATGGAATCCCCAGAGAGAAC+GGG | + | tig0004829:163914-163933 | Msa1341600:CDS | 50.0% | |
| ACTCCACCACTTCAAACCTC+AGG | + | tig0004829:163944-163963 | Msa1341600:CDS | 50.0% | |
| ! | GAACCTGAGGTTTGAAGTGG+TGG | - | tig0004829:163950-163969 | None:intergenic | 50.0% |
| ! | TTGCAAAGCCTTGGCTTTCC+TGG | - | tig0004829:163998-164017 | None:intergenic | 50.0% |
| ! | GTCACTACTGGGGTTAGTGA+AGG | - | tig0004829:164032-164051 | None:intergenic | 50.0% |
| CCCCAGTAGTGACAAGTGTT+TGG | + | tig0004829:164039-164058 | Msa1341600:CDS | 50.0% | |
| ! | AGTGTTTGGAGCTTCCTCCA+AGG | + | tig0004829:164053-164072 | Msa1341600:CDS | 50.0% |
| ATGAGGACCCTGCTGCAAAA+GGG | - | tig0004829:164101-164120 | None:intergenic | 50.0% | |
| !! | GTGGTTGGTTTGGTTCTTGG+AGG | + | tig0004829:164245-164264 | Msa1341600:CDS | 50.0% |
| GTTGAAGCTTACCCAGGTAG+GGG | - | tig0004829:164422-164441 | None:intergenic | 50.0% | |
| GGTTGAAGCTTACCCAGGTA+GGG | - | tig0004829:164423-164442 | None:intergenic | 50.0% | |
| TGCAGACAACCATCCGTAAG+GGG | + | tig0004829:164517-164536 | Msa1341600:intron | 50.0% | |
| AGCAGGTGGTTACACTTCCA+TGG | + | tig0004829:164544-164563 | Msa1341600:CDS | 50.0% | |
| AGCAAGAGAGCAGCATACCA+AGG | + | tig0004829:163846-163865 | Msa1341600:CDS | 50.0% | |
| ACAGAGAACAAAGGGAGCCT+TGG | - | tig0004829:163866-163885 | None:intergenic | 50.0% | |
| ATGGAATCCCCAGAGAGAAC+GGG | + | tig0004829:163914-163933 | Msa1341600:CDS | 50.0% | |
| ACTCCACCACTTCAAACCTC+AGG | + | tig0004829:163944-163963 | Msa1341600:CDS | 50.0% | |
| ! | GAACCTGAGGTTTGAAGTGG+TGG | - | tig0004829:163950-163969 | None:intergenic | 50.0% |
| ! | TTGCAAAGCCTTGGCTTTCC+TGG | - | tig0004829:163998-164017 | None:intergenic | 50.0% |
| ! | GTCACTACTGGGGTTAGTGA+AGG | - | tig0004829:164032-164051 | None:intergenic | 50.0% |
| CCCCAGTAGTGACAAGTGTT+TGG | + | tig0004829:164039-164058 | Msa1341600:CDS | 50.0% | |
| ! | AGTGTTTGGAGCTTCCTCCA+AGG | + | tig0004829:164053-164072 | Msa1341600:CDS | 50.0% |
| ATGAGGACCCTGCTGCAAAA+GGG | - | tig0004829:164101-164120 | None:intergenic | 50.0% | |
| !! | GTGGTTGGTTTGGTTCTTGG+AGG | + | tig0004829:164245-164264 | Msa1341600:CDS | 50.0% |
| GTTGAAGCTTACCCAGGTAG+GGG | - | tig0004829:164422-164441 | None:intergenic | 50.0% | |
| GGTTGAAGCTTACCCAGGTA+GGG | - | tig0004829:164423-164442 | None:intergenic | 50.0% | |
| TGCAGACAACCATCCGTAAG+GGG | + | tig0004829:164517-164536 | Msa1341600:intron | 50.0% | |
| AGCAGGTGGTTACACTTCCA+TGG | + | tig0004829:164544-164563 | Msa1341600:CDS | 50.0% | |
| TGGAATCCCCAGAGAGAACG+GGG | + | tig0004829:163915-163934 | Msa1341600:CDS | 55.0% | |
| TGCTGCAAAAGGGTGGGTGA+GGG | - | tig0004829:164091-164110 | None:intergenic | 55.0% | |
| ! | TCACCCACCCTTTTGCAGCA+GGG | + | tig0004829:164091-164110 | Msa1341600:CDS | 55.0% |
| CATGAGGACCCTGCTGCAAA+AGG | - | tig0004829:164102-164121 | None:intergenic | 55.0% | |
| TGGAGACCGGAATCTGTTGC+TGG | - | tig0004829:164128-164147 | None:intergenic | 55.0% | |
| GGGACTTGCCATGATGTGAG+AGG | - | tig0004829:164402-164421 | None:intergenic | 55.0% | |
| ATCATGGCAAGTCCCCTACC+TGG | + | tig0004829:164407-164426 | Msa1341600:CDS | 55.0% | |
| TCATGGCAAGTCCCCTACCT+GGG | + | tig0004829:164408-164427 | Msa1341600:CDS | 55.0% | |
| GGGTTGAAGCTTACCCAGGT+AGG | - | tig0004829:164424-164443 | None:intergenic | 55.0% | |
| CTGCTTCATCCCCTTACGGA+TGG | - | tig0004829:164529-164548 | None:intergenic | 55.0% | |
| CATCCGTAAGGGGATGAAGC+AGG | + | tig0004829:164527-164546 | Msa1341600:CDS | 55.0% | |
| CCACCTGCTTCATCCCCTTA+CGG | - | tig0004829:164533-164552 | None:intergenic | 55.0% | |
| TGGAATCCCCAGAGAGAACG+GGG | + | tig0004829:163915-163934 | Msa1341600:CDS | 55.0% | |
| TGCTGCAAAAGGGTGGGTGA+GGG | - | tig0004829:164091-164110 | None:intergenic | 55.0% | |
| ! | TCACCCACCCTTTTGCAGCA+GGG | + | tig0004829:164091-164110 | Msa1341600:CDS | 55.0% |
| CATGAGGACCCTGCTGCAAA+AGG | - | tig0004829:164102-164121 | None:intergenic | 55.0% | |
| TGGAGACCGGAATCTGTTGC+TGG | - | tig0004829:164128-164147 | None:intergenic | 55.0% | |
| GGGACTTGCCATGATGTGAG+AGG | - | tig0004829:164402-164421 | None:intergenic | 55.0% | |
| ATCATGGCAAGTCCCCTACC+TGG | + | tig0004829:164407-164426 | Msa1341600:CDS | 55.0% | |
| TCATGGCAAGTCCCCTACCT+GGG | + | tig0004829:164408-164427 | Msa1341600:CDS | 55.0% | |
| GGGTTGAAGCTTACCCAGGT+AGG | - | tig0004829:164424-164443 | None:intergenic | 55.0% | |
| CTGCTTCATCCCCTTACGGA+TGG | - | tig0004829:164529-164548 | None:intergenic | 55.0% | |
| CATCCGTAAGGGGATGAAGC+AGG | + | tig0004829:164527-164546 | Msa1341600:CDS | 55.0% | |
| CCACCTGCTTCATCCCCTTA+CGG | - | tig0004829:164533-164552 | None:intergenic | 55.0% | |
| ATCCCCAGAGAGAACGGGGA+CGG | + | tig0004829:163919-163938 | Msa1341600:CDS | 60.0% | |
| TCACCGTCCCCGTTCTCTCT+GGG | - | tig0004829:163925-163944 | None:intergenic | 60.0% | |
| CTGCTGCAAAAGGGTGGGTG+AGG | - | tig0004829:164092-164111 | None:intergenic | 60.0% | |
| ! | CTCACCCACCCTTTTGCAGC+AGG | + | tig0004829:164090-164109 | Msa1341600:CDS | 60.0% |
| GGACCCTGCTGCAAAAGGGT+GGG | - | tig0004829:164097-164116 | None:intergenic | 60.0% | |
| AGGACCCTGCTGCAAAAGGG+TGG | - | tig0004829:164098-164117 | None:intergenic | 60.0% | |
| CCGTAAGGGGATGAAGCAGG+TGG | + | tig0004829:164530-164549 | Msa1341600:CDS | 60.0% | |
| ATCCCCAGAGAGAACGGGGA+CGG | + | tig0004829:163919-163938 | Msa1341600:CDS | 60.0% | |
| TCACCGTCCCCGTTCTCTCT+GGG | - | tig0004829:163925-163944 | None:intergenic | 60.0% | |
| CTGCTGCAAAAGGGTGGGTG+AGG | - | tig0004829:164092-164111 | None:intergenic | 60.0% | |
| ! | CTCACCCACCCTTTTGCAGC+AGG | + | tig0004829:164090-164109 | Msa1341600:CDS | 60.0% |
| GGACCCTGCTGCAAAAGGGT+GGG | - | tig0004829:164097-164116 | None:intergenic | 60.0% | |
| AGGACCCTGCTGCAAAAGGG+TGG | - | tig0004829:164098-164117 | None:intergenic | 60.0% | |
| CCGTAAGGGGATGAAGCAGG+TGG | + | tig0004829:164530-164549 | Msa1341600:CDS | 60.0% | |
| CACCGTCCCCGTTCTCTCTG+GGG | - | tig0004829:163924-163943 | None:intergenic | 65.0% | |
| GTCACCGTCCCCGTTCTCTC+TGG | - | tig0004829:163926-163945 | None:intergenic | 65.0% | |
| CACCGTCCCCGTTCTCTCTG+GGG | - | tig0004829:163924-163943 | None:intergenic | 65.0% | |
| GTCACCGTCCCCGTTCTCTC+TGG | - | tig0004829:163926-163945 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004829 | gene | 163824 | 164614 | 163824 | ID=Msa1341600;Name=Msa1341600 |
| tig0004829 | mRNA | 163824 | 164614 | 163824 | ID=Msa1341600-mRNA-1;Parent=Msa1341600;Name=Msa1341600-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|1|1|2|0|232 |
| tig0004829 | exon | 163824 | 164429 | 163824 | ID=Msa1341600-mRNA-1:exon:3227;Parent=Msa1341600-mRNA-1 |
| tig0004829 | exon | 164522 | 164614 | 164522 | ID=Msa1341600-mRNA-1:exon:3228;Parent=Msa1341600-mRNA-1 |
| tig0004829 | CDS | 163824 | 164429 | 163824 | ID=Msa1341600-mRNA-1:cds;Parent=Msa1341600-mRNA-1 |
| tig0004829 | CDS | 164522 | 164614 | 164522 | ID=Msa1341600-mRNA-1:cds;Parent=Msa1341600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
