AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0783530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783530 MtrunA17_Chr5g0438111 86.047 473 34 1 26 466 63 535 0.0 817
Msa0783530 MtrunA17_Chr3g0114551 44.751 543 185 13 28 460 59 596 1.69e-121 367
Msa0783530 MtrunA17_Chr7g0244501 33.992 506 252 14 26 462 67 559 8.69e-60 205
Msa0783530 MtrunA17_Chr4g0013151 32.377 488 264 12 21 455 128 602 2.53e-46 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783530 AT2G40480.1 37.448 478 242 15 11 466 74 516 4.95e-63 213
Msa0783530 AT3G56270.1 46.809 141 58 3 24 161 64 190 8.29e-27 112
Msa0783530 AT2G38370.1 28.311 219 133 4 262 458 288 504 1.08e-12 70.5
Msa0783530 AT2G38370.2 28.311 219 133 4 262 458 305 521 1.21e-12 70.5

Find 64 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCAGGTATTTGAAATT+CGG 0.271157 5_2:+67633500 None:intergenic
CTTCTTCTTCTGATGTGATA+TGG 0.272323 5_2:+67632999 None:intergenic
TTTGCTGCGTAGAACTTCTT+TGG 0.279623 5_2:+67633386 None:intergenic
TCTTCAGGTATTTGAAATTC+GGG 0.319312 5_2:+67633501 None:intergenic
ACTCAATCGTGCGAAAATAT+TGG 0.332195 5_2:-67634156 Msa0783530:CDS
TTCCTAAGGGGAATGATATT+CGG 0.360853 5_2:+67632965 None:intergenic
TCACATCAGAAGAAGAAGTT+TGG 0.372747 5_2:-67632994 Msa0783530:CDS
TAATTTCTCAAGAATCGTTT+TGG 0.380695 5_2:+67634218 None:intergenic
TTTATCATTTCGCTTTCCTA+AGG 0.403073 5_2:+67632951 None:intergenic
GTGCTGCTGAAGAGGCTCTA+AGG 0.408138 5_2:-67633311 Msa0783530:CDS
GCTGAAATCAAGGCTCTATC+TGG 0.415677 5_2:-67633606 Msa0783530:CDS
GATGTGATATGGACTGCTTT+TGG 0.421669 5_2:+67633010 None:intergenic
TTCTTCAAGATAGACTCTTC+AGG 0.424981 5_2:+67633486 None:intergenic
AACTCGGTTAACAACATATC+GGG 0.441404 5_2:+67634051 None:intergenic
GATTCCTGAAAACTATCTAA+AGG 0.452972 5_2:-67633283 Msa0783530:CDS
TTCAGCTAGAGCAATGGCTT+CGG 0.453113 5_2:+67633623 None:intergenic
ACCAGAAGCTCCTGTAGAAA+AGG 0.464298 5_2:-67633839 Msa0783530:CDS
TAACTCGGTTAACAACATAT+CGG 0.466299 5_2:+67634050 None:intergenic
AGAGGAACAAGCAGCAAAGT+TGG 0.467968 5_2:-67634301 Msa0783530:CDS
CTTGATGTGCTTGAAGAACT+AGG 0.481563 5_2:-67634246 Msa0783530:CDS
CATTGCTCTAGCTGAAATCA+AGG 0.482614 5_2:-67633616 Msa0783530:CDS
ATTCCTGAAAACTATCTAAA+GGG 0.483531 5_2:-67633282 Msa0783530:CDS
AAAGCAACGTGCTGCTGAAG+AGG 0.489875 5_2:-67633319 Msa0783530:CDS
GAAGAACGATTTAAAATCGA+AGG 0.493102 5_2:-67635594 Msa0783530:CDS
GGTAAAACTATAAACGATCT+CGG 0.493887 5_2:-67634006 Msa0783530:CDS
GGAAGAGCACGCTGAAACAA+AGG 0.495443 5_2:-67633109 Msa0783530:CDS
TTATCATTTCGCTTTCCTAA+GGG 0.506744 5_2:+67632952 None:intergenic
TCTACTCCTTTCTGTCCCAT+CGG 0.506785 5_2:+67635621 None:intergenic
TTTGTCGTAGTATATTCGTC+AGG 0.509274 5_2:+67633138 None:intergenic
ACAAGCAGCAAAGTTGGAAA+AGG 0.509543 5_2:-67634295 Msa0783530:CDS
AGATCTACTCAGCAGGAAGC+AGG 0.509837 5_2:-67633163 Msa0783530:CDS
GTGGATGTTGAACAGTTCAA+TGG 0.511134 5_2:-67633772 Msa0783530:CDS
GTAAAACTATAAACGATCTC+GGG 0.525454 5_2:-67634005 Msa0783530:CDS
TGAAGAGTCTATCTTGAAGA+AGG 0.526219 5_2:-67633484 Msa0783530:CDS
CTGAAGAGGCTCTAAGGAGA+TGG 0.529424 5_2:-67633305 Msa0783530:CDS
CAATGAGAGATCTACTCAGC+AGG 0.529935 5_2:-67633170 Msa0783530:CDS
TTTGAATAAGAAGATGAAGA+AGG 0.538398 5_2:-67633959 Msa0783530:CDS
CACCCCTCAAAAGGTTGTGA+AGG 0.541484 5_2:-67633803 Msa0783530:CDS
TCAAATGCTTCGAGCAATGA+GGG 0.544411 5_2:-67633076 Msa0783530:CDS
CTTTGACATAAAGAAAATAG+AGG 0.546705 5_2:-67634319 Msa0783530:CDS
ATCCGAATATCATTCCCCTT+AGG 0.550700 5_2:-67632967 Msa0783530:CDS
GAAACCGAGGATCTTACAGC+TGG 0.555875 5_2:+67633192 None:intergenic
CAACTGAACATGAGAATGAC+GGG 0.556282 5_2:-67633038 Msa0783530:CDS
TCGAAACCGATGGGACAGAA+AGG 0.563818 5_2:-67635627 None:intergenic
CTTGATTTCAGCTAGAGCAA+TGG 0.566969 5_2:+67633617 None:intergenic
CCGTCATTCTCATGTTCAGT+TGG 0.568973 5_2:+67633039 None:intergenic
ATATACTACGACAAAGGAGA+TGG 0.572916 5_2:-67633130 Msa0783530:CDS
GGTTGTGAAGGATTTCAAAG+TGG 0.577609 5_2:-67633791 Msa0783530:CDS
AAACAAGCTAAGATGAACCT+TGG 0.584371 5_2:-67634027 Msa0783530:CDS
TGTTGAACAGTTCAATGGAA+TGG 0.592209 5_2:-67633767 Msa0783530:intron
GAGAAGAGAGAAAATCGCAC+AGG 0.596658 5_2:-67635571 Msa0783530:CDS
GAAGCCAGCTGTAAGATCCT+CGG 0.596662 5_2:-67633196 Msa0783530:CDS
TATCATTTCGCTTTCCTAAG+GGG 0.598187 5_2:+67632953 None:intergenic
TCATCGAGTTATGCATAGCT+CGG 0.600248 5_2:+67633259 None:intergenic
AGCTATCTCTGCTCAAAATG+TGG 0.600750 5_2:-67633887 Msa0783530:CDS
CCAACTGAACATGAGAATGA+CGG 0.608552 5_2:-67633039 Msa0783530:CDS
AAGAACGATTTAAAATCGAA+GGG 0.618332 5_2:-67635593 Msa0783530:CDS
GTCAAATGCTTCGAGCAATG+AGG 0.623709 5_2:-67633077 Msa0783530:CDS
TGACGAATATACTACGACAA+AGG 0.630375 5_2:-67633136 Msa0783530:CDS
CTTCAGGTATTTGAAATTCG+GGG 0.632963 5_2:+67633502 None:intergenic
TAGATCTCTCATTGAAACCG+AGG 0.641066 5_2:+67633179 None:intergenic
GAAATCAAGGCTCTATCTGG+TGG 0.653836 5_2:-67633603 Msa0783530:CDS
TCGGGCGATGAAGTATGACA+TGG 0.690388 5_2:+67634069 None:intergenic
TGTTCTCGCATAGAAAATCG+TGG 0.701325 5_2:+67633567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTTGACAAAATAAT+AGG + chr5_2:67634048-67634067 None:intergenic 10.0%
!!! TATAATAACATAACAGATTT+TGG + chr5_2:67633614-67633633 None:intergenic 15.0%
!!! TTTTGTCAAAATATAACAAT+CGG - chr5_2:67634052-67634071 Msa0783530:CDS 15.0%
!!! ACACAATATTCTAAAAAAAT+TGG - chr5_2:67635142-67635161 Msa0783530:intron 15.0%
!! ACTAGTAAGTGTTTATATAA+GGG + chr5_2:67633295-67633314 None:intergenic 20.0%
!! AACTAGTAAGTGTTTATATA+AGG + chr5_2:67633296-67633315 None:intergenic 20.0%
!! TTATATAAACACTTACTAGT+TGG - chr5_2:67633295-67633314 Msa0783530:CDS 20.0%
!! TATATAAACACTTACTAGTT+GGG - chr5_2:67633296-67633315 Msa0783530:CDS 20.0%
!! TTAAAGTCTAGTGAAAAAAT+TGG + chr5_2:67633394-67633413 None:intergenic 20.0%
!!! GTTAAAGTGACTTTAAAATT+AGG - chr5_2:67633431-67633450 Msa0783530:CDS 20.0%
!! ATTCGCTATAACAAAAATAA+CGG + chr5_2:67633559-67633578 None:intergenic 20.0%
!!! TAACTTTAGAAATATCTACA+TGG + chr5_2:67633696-67633715 None:intergenic 20.0%
!! TTTGTCAAAATATAACAATC+GGG - chr5_2:67634053-67634072 Msa0783530:CDS 20.0%
!!! TACTTCATCAATTTTGAAAT+TGG + chr5_2:67635111-67635130 None:intergenic 20.0%
!!! CAATATTCTAAAAAAATTGG+AGG - chr5_2:67635145-67635164 Msa0783530:intron 20.0%
!!! ATTTTAACTGAAGCTTTAAA+CGG - chr5_2:67635200-67635219 Msa0783530:intron 20.0%
!! AAGAACGATTTAAAATCGAA+GGG - chr5_2:67632967-67632986 Msa0783530:CDS 25.0%
! ATATAAACACTTACTAGTTG+GGG - chr5_2:67633297-67633316 Msa0783530:CDS 25.0%
! CACATATCTTCCAAAAATAA+CGG + chr5_2:67633465-67633484 None:intergenic 25.0%
!!! ATTTTTGTTATAGCGAATCT+AGG - chr5_2:67633561-67633580 Msa0783530:CDS 25.0%
!!! AAACATAAAGCATTGAGAAT+TGG - chr5_2:67633839-67633858 Msa0783530:CDS 25.0%
! ATATACATTTCCTTATCTTG+CGG + chr5_2:67633893-67633912 None:intergenic 25.0%
! CTTTGTTAGATAGAATGTAT+TGG + chr5_2:67634144-67634163 None:intergenic 25.0%
! ACATCAGATTGAATTACAAA+GGG + chr5_2:67634187-67634206 None:intergenic 25.0%
! AACATCAGATTGAATTACAA+AGG + chr5_2:67634188-67634207 None:intergenic 25.0%
! CTTTGACATAAAGAAAATAG+AGG - chr5_2:67634241-67634260 Msa0783530:CDS 25.0%
!! TAATTTCTCAAGAATCGTTT+TGG + chr5_2:67634345-67634364 None:intergenic 25.0%
!! TTTGCAATATTTTCTCTTGA+CGG + chr5_2:67634463-67634482 None:intergenic 25.0%
! TTTGAATAAGAAGATGAAGA+AGG - chr5_2:67634601-67634620 Msa0783530:intron 25.0%
!! AAAGTAAAATCCTTTTCTAC+AGG + chr5_2:67634734-67634753 None:intergenic 25.0%
!! TATTCTAAAAAAATTGGAGG+AGG - chr5_2:67635148-67635167 Msa0783530:intron 25.0%
! ATTCCTGAAAACTATCTAAA+GGG - chr5_2:67635278-67635297 Msa0783530:intron 25.0%
! GAAGAACGATTTAAAATCGA+AGG - chr5_2:67632966-67632985 Msa0783530:CDS 30.0%
TAAGTGTTTATATAAGGGTG+GGG + chr5_2:67633290-67633309 None:intergenic 30.0%
GTAAGTGTTTATATAAGGGT+GGG + chr5_2:67633291-67633310 None:intergenic 30.0%
AGTAAGTGTTTATATAAGGG+TGG + chr5_2:67633292-67633311 None:intergenic 30.0%
! AAAGTCACTTTAACTAGTGT+TGG + chr5_2:67633425-67633444 None:intergenic 30.0%
TAAAGTCACATATCTTCCAT+TGG + chr5_2:67633524-67633543 None:intergenic 30.0%
!! TGTTTTTAAATTGCACGAGA+AGG + chr5_2:67633649-67633668 None:intergenic 30.0%
!! GTAGAATAGTTTTACACTGT+CGG - chr5_2:67633772-67633791 Msa0783530:CDS 30.0%
CTAATTGCTTCTCAAGTAAA+TGG - chr5_2:67633963-67633982 Msa0783530:CDS 30.0%
CAAAATAATAGGCACAAACA+TGG + chr5_2:67634037-67634056 None:intergenic 30.0%
CATCAGATTGAATTACAAAG+GGG + chr5_2:67634186-67634205 None:intergenic 30.0%
TAAGATTGTCATTAGCAGAA+CGG - chr5_2:67634209-67634228 Msa0783530:CDS 30.0%
TAACTCGGTTAACAACATAT+CGG + chr5_2:67634513-67634532 None:intergenic 30.0%
!!! CATCTTAGCTTGTTTTAACT+CGG + chr5_2:67634528-67634547 None:intergenic 30.0%
!! GATCGTTTATAGTTTTACCA+AGG + chr5_2:67634553-67634572 None:intergenic 30.0%
GGTAAAACTATAAACGATCT+CGG - chr5_2:67634554-67634573 Msa0783530:intron 30.0%
GTAAAACTATAAACGATCTC+GGG - chr5_2:67634555-67634574 Msa0783530:intron 30.0%
!!! CTTTGTCATTGCTTCTTTTT+TGG + chr5_2:67634699-67634718 None:intergenic 30.0%
! TCTTCAGGTATTTGAAATTC+GGG + chr5_2:67635062-67635081 None:intergenic 30.0%
! CTCTTCAGGTATTTGAAATT+CGG + chr5_2:67635063-67635082 None:intergenic 30.0%
GATTCCTGAAAACTATCTAA+AGG - chr5_2:67635277-67635296 Msa0783530:intron 30.0%
TTATCATTTCGCTTTCCTAA+GGG + chr5_2:67635611-67635630 None:intergenic 30.0%
TTTATCATTTCGCTTTCCTA+AGG + chr5_2:67635612-67635631 None:intergenic 30.0%
! AAGCATCAACTGTGAGATTT+TGG - chr5_2:67633012-67633031 Msa0783530:CDS 35.0%
ACTATGAGAAACTAGTGTGT+GGG + chr5_2:67633358-67633377 None:intergenic 35.0%
!! GGATAGCATACCGTTATTTT+TGG - chr5_2:67633452-67633471 Msa0783530:CDS 35.0%
ACTAGTTAAAGTGACTCCAA+TGG - chr5_2:67633505-67633524 Msa0783530:CDS 35.0%
AATCACGCAATAATGACACT+TGG + chr5_2:67633737-67633756 None:intergenic 35.0%
TGTAAGATCAGAGTCGAATT+TGG + chr5_2:67633932-67633951 None:intergenic 35.0%
ACTCAATCGTGCGAAAATAT+TGG - chr5_2:67634404-67634423 Msa0783530:intron 35.0%
AACTCGGTTAACAACATATC+GGG + chr5_2:67634512-67634531 None:intergenic 35.0%
AAACAAGCTAAGATGAACCT+TGG - chr5_2:67634533-67634552 Msa0783530:intron 35.0%
! AATCCTTCACAACCTTTTGA+GGG + chr5_2:67634763-67634782 None:intergenic 35.0%
! AAATCCTTCACAACCTTTTG+AGG + chr5_2:67634764-67634783 None:intergenic 35.0%
TGTTGAACAGTTCAATGGAA+TGG - chr5_2:67634793-67634812 Msa0783530:intron 35.0%
ATATTAAGACTGCTGAGATG+AGG - chr5_2:67634876-67634895 Msa0783530:intron 35.0%
AAAAATGGAAGAAGCTGCAA+TGG - chr5_2:67634911-67634930 Msa0783530:intron 35.0%
! CTTCAGGTATTTGAAATTCG+GGG + chr5_2:67635061-67635080 None:intergenic 35.0%
TTCTTCAAGATAGACTCTTC+AGG + chr5_2:67635077-67635096 None:intergenic 35.0%
TGAAGAGTCTATCTTGAAGA+AGG - chr5_2:67635076-67635095 Msa0783530:intron 35.0%
TTTGTCGTAGTATATTCGTC+AGG + chr5_2:67635425-67635444 None:intergenic 35.0%
TGACGAATATACTACGACAA+AGG - chr5_2:67635424-67635443 Msa0783530:intron 35.0%
ATATACTACGACAAAGGAGA+TGG - chr5_2:67635430-67635449 Msa0783530:intron 35.0%
CTTCTTCTTCTGATGTGATA+TGG + chr5_2:67635564-67635583 None:intergenic 35.0%
TCACATCAGAAGAAGAAGTT+TGG - chr5_2:67635566-67635585 Msa0783530:CDS 35.0%
TTCCTAAGGGGAATGATATT+CGG + chr5_2:67635598-67635617 None:intergenic 35.0%
TATCATTTCGCTTTCCTAAG+GGG + chr5_2:67635610-67635629 None:intergenic 35.0%
GTTCACCCGTTCACAAAAAT+GGG - chr5_2:67633236-67633255 Msa0783530:CDS 40.0%
!! AGGTACCCATTTTTGTGAAC+GGG + chr5_2:67633244-67633263 None:intergenic 40.0%
!! GAGGTACCCATTTTTGTGAA+CGG + chr5_2:67633245-67633264 None:intergenic 40.0%
TCACAAAAATGGGTACCTCA+AGG - chr5_2:67633246-67633265 Msa0783530:CDS 40.0%
CACAAAAATGGGTACCTCAA+GGG - chr5_2:67633247-67633266 Msa0783530:CDS 40.0%
GACTTAAAAATGTCCCACAC+TGG + chr5_2:67633330-67633349 None:intergenic 40.0%
CACTATGAGAAACTAGTGTG+TGG + chr5_2:67633359-67633378 None:intergenic 40.0%
! GGAGTCACTTTAACTAGTGT+TGG + chr5_2:67633503-67633522 None:intergenic 40.0%
ATAATAGGCACAAACATGGC+AGG + chr5_2:67634033-67634052 None:intergenic 40.0%
ACAAGCAGCAAAGTTGGAAA+AGG - chr5_2:67634265-67634284 Msa0783530:CDS 40.0%
CTTGATGTGCTTGAAGAACT+AGG - chr5_2:67634314-67634333 Msa0783530:CDS 40.0%
! GCAATATTTTCTCTTGACGG+TGG + chr5_2:67634460-67634479 None:intergenic 40.0%
!! AGGAAAGACTTTTTCTCGAG+AGG - chr5_2:67634621-67634640 Msa0783530:intron 40.0%
AGCTATCTCTGCTCAAAATG+TGG - chr5_2:67634673-67634692 Msa0783530:intron 40.0%
! TACTTTTGACACCCCTCAAA+AGG - chr5_2:67634748-67634767 Msa0783530:intron 40.0%
! ATCCTTCACAACCTTTTGAG+GGG + chr5_2:67634762-67634781 None:intergenic 40.0%
GGTTGTGAAGGATTTCAAAG+TGG - chr5_2:67634769-67634788 Msa0783530:intron 40.0%
GTGGATGTTGAACAGTTCAA+TGG - chr5_2:67634788-67634807 Msa0783530:intron 40.0%
! AGGTGGTTTGCAGCTAAAAA+TGG - chr5_2:67634896-67634915 Msa0783530:intron 40.0%
CTTGATTTCAGCTAGAGCAA+TGG + chr5_2:67634946-67634965 None:intergenic 40.0%
CATTGCTCTAGCTGAAATCA+AGG - chr5_2:67634944-67634963 Msa0783530:intron 40.0%
TGTTCTCGCATAGAAAATCG+TGG + chr5_2:67634996-67635015 None:intergenic 40.0%
TTTGCTGCGTAGAACTTCTT+TGG + chr5_2:67635177-67635196 None:intergenic 40.0%
TCATCGAGTTATGCATAGCT+CGG + chr5_2:67635304-67635323 None:intergenic 40.0%
TAGATCTCTCATTGAAACCG+AGG + chr5_2:67635384-67635403 None:intergenic 40.0%
TCAAATGCTTCGAGCAATGA+GGG - chr5_2:67635484-67635503 Msa0783530:intron 40.0%
CCAACTGAACATGAGAATGA+CGG - chr5_2:67635521-67635540 Msa0783530:intron 40.0%
CAACTGAACATGAGAATGAC+GGG - chr5_2:67635522-67635541 Msa0783530:intron 40.0%
!! GATGTGATATGGACTGCTTT+TGG + chr5_2:67635553-67635572 None:intergenic 40.0%
ATCCGAATATCATTCCCCTT+AGG - chr5_2:67635593-67635612 Msa0783530:CDS 40.0%
GAGAAGAGAGAAAATCGCAC+AGG - chr5_2:67632989-67633008 Msa0783530:CDS 45.0%
CGTTCACCCGTTCACAAAAA+TGG - chr5_2:67633235-67633254 Msa0783530:CDS 45.0%
GAACACATAGCCGCAAGATA+AGG - chr5_2:67633880-67633899 Msa0783530:CDS 45.0%
GGGACTAACAAGATGCGTTA+GGG - chr5_2:67634073-67634092 Msa0783530:CDS 45.0%
AGAGGAACAAGCAGCAAAGT+TGG - chr5_2:67634259-67634278 Msa0783530:CDS 45.0%
!! GACTTTTTCTCGAGAGGACA+CGG - chr5_2:67634627-67634646 Msa0783530:intron 45.0%
!! ACTTTTTCTCGAGAGGACAC+GGG - chr5_2:67634628-67634647 Msa0783530:intron 45.0%
! TTTTCTACAGGAGCTTCTGG+TGG + chr5_2:67634722-67634741 None:intergenic 45.0%
ACCAGAAGCTCCTGTAGAAA+AGG - chr5_2:67634721-67634740 Msa0783530:intron 45.0%
! TCCTTTTCTACAGGAGCTTC+TGG + chr5_2:67634725-67634744 None:intergenic 45.0%
TCTGCAGAAGTTTCGAAGCA+AGG - chr5_2:67634827-67634846 Msa0783530:intron 45.0%
CTGCAGAAGTTTCGAAGCAA+GGG - chr5_2:67634828-67634847 Msa0783530:intron 45.0%
TGCAGAAGTTTCGAAGCAAG+GGG - chr5_2:67634829-67634848 Msa0783530:intron 45.0%
TTAAGACTGCTGAGATGAGG+TGG - chr5_2:67634879-67634898 Msa0783530:intron 45.0%
TTCAGCTAGAGCAATGGCTT+CGG + chr5_2:67634940-67634959 None:intergenic 45.0%
GCTGAAATCAAGGCTCTATC+TGG - chr5_2:67634954-67634973 Msa0783530:intron 45.0%
GAAATCAAGGCTCTATCTGG+TGG - chr5_2:67634957-67634976 Msa0783530:intron 45.0%
! CGGCCCTTTAGATAGTTTTC+AGG + chr5_2:67635284-67635303 None:intergenic 45.0%
CAATGAGAGATCTACTCAGC+AGG - chr5_2:67635390-67635409 Msa0783530:intron 45.0%
GTCAAATGCTTCGAGCAATG+AGG - chr5_2:67635483-67635502 Msa0783530:intron 45.0%
CCGTCATTCTCATGTTCAGT+TGG + chr5_2:67635524-67635543 None:intergenic 45.0%
! AACGCGTTTTACGCGTGACT+TGG - chr5_2:67633049-67633068 Msa0783530:CDS 50.0%
! ACGCGTTTTACGCGTGACTT+GGG - chr5_2:67633050-67633069 Msa0783530:CDS 50.0%
CGGGACTAACAAGATGCGTT+AGG - chr5_2:67634072-67634091 Msa0783530:CDS 50.0%
TCGGGCGATGAAGTATGACA+TGG + chr5_2:67634494-67634513 None:intergenic 50.0%
CACCCCTCAAAAGGTTGTGA+AGG - chr5_2:67634757-67634776 Msa0783530:intron 50.0%
! AAAGCAACGTGCTGCTGAAG+AGG - chr5_2:67635241-67635260 Msa0783530:intron 50.0%
!! CTGAAGAGGCTCTAAGGAGA+TGG - chr5_2:67635255-67635274 Msa0783530:intron 50.0%
GAAGCCAGCTGTAAGATCCT+CGG - chr5_2:67635364-67635383 Msa0783530:intron 50.0%
GAAACCGAGGATCTTACAGC+TGG + chr5_2:67635371-67635390 None:intergenic 50.0%
AGATCTACTCAGCAGGAAGC+AGG - chr5_2:67635397-67635416 Msa0783530:intron 50.0%
! GGAAGAGCACGCTGAAACAA+AGG - chr5_2:67635451-67635470 Msa0783530:intron 50.0%
! CGCGTTTTACGCGTGACTTG+GGG - chr5_2:67633051-67633070 Msa0783530:CDS 55.0%
TTGGGGTGACTCTCCAGTGT+GGG - chr5_2:67633314-67633333 Msa0783530:CDS 55.0%
! GTGCTGCTGAAGAGGCTCTA+AGG - chr5_2:67635249-67635268 Msa0783530:intron 55.0%
! GTACCTCAAGGGCACACCCT+TGG - chr5_2:67633258-67633277 Msa0783530:CDS 60.0%
AAGGGTGGGGTGACCTCCAA+GGG + chr5_2:67633277-67633296 None:intergenic 60.0%
TAAGGGTGGGGTGACCTCCA+AGG + chr5_2:67633278-67633297 None:intergenic 60.0%
GTTGGGGTGACTCTCCAGTG+TGG - chr5_2:67633313-67633332 Msa0783530:CDS 60.0%
CTTGGGCTTGGGTCGTGGGT+TGG + chr5_2:67633161-67633180 None:intergenic 65.0%
! CCTCCAAGGGTGTGCCCTTG+AGG + chr5_2:67633264-67633283 None:intergenic 65.0%
! CCTCAAGGGCACACCCTTGG+AGG - chr5_2:67633261-67633280 Msa0783530:CDS 65.0%
CGGGCTTGGGCTTGGGTCGT+GGG + chr5_2:67633165-67633184 None:intergenic 70.0%
CCACGACCCAAGCCCAAGCC+CGG - chr5_2:67633163-67633182 Msa0783530:CDS 70.0%
CCGGGCTTGGGCTTGGGTCG+TGG + chr5_2:67633166-67633185 None:intergenic 75.0%
GACCCAAGCCCAAGCCCGGC+CGG - chr5_2:67633167-67633186 Msa0783530:CDS 75.0%
GACCGGCCGGGCTTGGGCTT+GGG + chr5_2:67633172-67633191 None:intergenic 75.0%
CAAGCCCAAGCCCGGCCGGT+CGG - chr5_2:67633171-67633190 Msa0783530:CDS 75.0%
! CGACCGGCCGGGCTTGGGCT+TGG + chr5_2:67633173-67633192 None:intergenic 80.0%
! CCGTCCGACCGGCCGGGCTT+GGG + chr5_2:67633178-67633197 None:intergenic 80.0%
! CCCAAGCCCGGCCGGTCGGA+CGG - chr5_2:67633175-67633194 Msa0783530:CDS 80.0%
! AAGCCCGGCCGGTCGGACGG+CGG - chr5_2:67633178-67633197 Msa0783530:CDS 80.0%
! CGACGACGCCGCCGTCCGAC+CGG + chr5_2:67633189-67633208 None:intergenic 80.0%
! GCCGTCCGACCGGCCGGGCT+TGG + chr5_2:67633179-67633198 None:intergenic 85.0%
! ACGCCGCCGTCCGACCGGCC+GGG + chr5_2:67633184-67633203 None:intergenic 85.0%
! GACGCCGCCGTCCGACCGGC+CGG + chr5_2:67633185-67633204 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 67632942 67635640 67632942 ID=Msa0783530;Name=Msa0783530
chr5_2 mRNA 67632942 67635640 67632942 ID=Msa0783530-mRNA-1;Parent=Msa0783530;Name=Msa0783530-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.66|1|1|3|0|466
chr5_2 exon 67635560 67635640 67635560 ID=Msa0783530-mRNA-1:exon:20260;Parent=Msa0783530-mRNA-1
chr5_2 exon 67633768 67634355 67633768 ID=Msa0783530-mRNA-1:exon:20259;Parent=Msa0783530-mRNA-1
chr5_2 exon 67632942 67633673 67632942 ID=Msa0783530-mRNA-1:exon:20258;Parent=Msa0783530-mRNA-1
chr5_2 CDS 67635560 67635640 67635560 ID=Msa0783530-mRNA-1:cds;Parent=Msa0783530-mRNA-1
chr5_2 CDS 67633768 67634355 67633768 ID=Msa0783530-mRNA-1:cds;Parent=Msa0783530-mRNA-1
chr5_2 CDS 67632942 67633673 67632942 ID=Msa0783530-mRNA-1:cds;Parent=Msa0783530-mRNA-1
Gene Sequence

>Msa0783530

ATGGGACAGAAAGGAGTAGAAGAAGAAGAACGATTTAAAATCGAAGGGAGAAGAGAGAAAATCGCACAGGAAGCATCAACTAACGGTATTGAAGACTTTGACATAAAGAAAATAGAGGAACAAGCAGCAAAGTTGGAAAAGGATTTGATTATGAAAGAACTCGAAACACTTGATGTGCTTGAAGAACTAGGATCTGCCAAAACGATTCTTGAGAAATTAAAGCAGCAGCTACAATCTGAAGCATTGAAATGTGCTTCAACTCAATCGTGCGAAAATATTGGAGCTCTTGTTAAAAATTCTGAAAAGATTGTCCACCGTCAAGAGAAAATATTGCAAATTTCAAGTCCATGTCATACTTCATCGCCCGATATGTTGTTAACCGAGTTAAAACAAGCTAAGATGAACCTTGGTAAAACTATAAACGATCTCGGGACAATACAATCTTCTGTCGAAACTTTGAATAAGAAGATGAAGAAGGAAAGACTTTTTCTCGAGAGGACACGGGAGAATCTACAATCAAAGTTTGCAGCTATCTCTGCTCAAAATGTGGCCAAAAAAGAAGCAATGACAAAGCCACCAGAAGCTCCTGTAGAAAAGGATTTTACTTTTGACACCCCTCAAAAGGTTGTGAAGGATTTCAAAGTGGATGTTGAACAGTTCAATGGAATGCTAAAAATGGAAGAAGCTGCAATGGCAGCCGAAGCCATTGCTCTAGCTGAAATCAAGGCTCTATCTGGTGGTGCTGATATATCACCACGATTTTCTATGCGAGAACATCAGAAAGTGACTTCTGCATTAGAGTTATACTCTACTCTAAACCCCGAATTTCAAATACCTGAAGAGTCTATCTTGAAGAAGGTAATACATGCCAATTTCAAAATTGATGAAGTAAATGCTTCTAAACACAATATTCTAAAAAAATTGGAGGAGGCAACCAAAGAAGTTCTACGCAGCAAAGAAATTTTAACTGAAGCTTTAAACGGTATTGAAACTGCAAACAGAAAGCAACGTGCTGCTGAAGAGGCTCTAAGGAGATGGATTCCTGAAAACTATCTAAAGGGCCGAGCTATGCATAACTCGATGAAGCGAAACAAGCTCAATCAAGTTGAAAAGTGTCAAACTATGAAGCCAGCTGTAAGATCCTCGGTTTCAATGAGAGATCTACTCAGCAGGAAGCAGGTTCCTGACGAATATACTACGACAAAGGAGATGGAAGAGCACGCTGAAACAAAGGTAGCGTTGAGTCAAATGCTTCGAGCAATGAGGGAAAATCAAACTCTTCCAACTGAACATGAGAATGACGGGAGCGACCAAAAGCAGTCCATATCACATCAGAAGAAGAAGTTTGGATTCATCCGAATATCATTCCCCTTAGGAAAGCGAAATGATAAAAAGACATGA

Protein sequence

>Msa0783530

MGQKGVEEEERFKIEGRREKIAQEASTNGIEDFDIKKIEEQAAKLEKDLIMKELETLDVLEELGSAKTILEKLKQQLQSEALKCASTQSCENIGALVKNSEKIVHRQEKILQISSPCHTSSPDMLLTELKQAKMNLGKTINDLGTIQSSVETLNKKMKKERLFLERTRENLQSKFAAISAQNVAKKEAMTKPPEAPVEKDFTFDTPQKVVKDFKVDVEQFNGMLKMEEAAMAAEAIALAEIKALSGGADISPRFSMREHQKVTSALELYSTLNPEFQIPEESILKKVIHANFKIDEVNASKHNILKKLEEATKEVLRSKEILTEALNGIETANRKQRAAEEALRRWIPENYLKGRAMHNSMKRNKLNQVEKCQTMKPAVRSSVSMRDLLSRKQVPDEYTTTKEMEEHAETKVALSQMLRAMRENQTLPTEHENDGSDQKQSISHQKKKFGFIRISFPLGKRNDKKT*