Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342070 | XP_013444421.1 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342070 | sp|Q5XEM9|ALFL5_ARATH | 71.373 | 255 | 68 | 2 | 6 | 256 | 7 | 260 | 1.55e-121 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342070 | A0FK62 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1342070 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1233780 | Msa1342070 | 0.861556 | 9.440359e-64 | -8.615850e-47 |
| Msa1276090 | Msa1342070 | 0.860908 | 1.487498e-63 | -8.615850e-47 |
| Msa1000970 | Msa1342070 | 0.805059 | 1.602900e-49 | -8.615850e-47 |
| Msa0563940 | Msa1342070 | 0.810292 | 1.239191e-50 | -8.615850e-47 |
| Msa0966710 | Msa1342070 | 0.811965 | 5.375684e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342070 | MtrunA17_Chr8g0343441 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| Msa1342070 | MtrunA17_Chr2g0329821 | 80.081 | 246 | 48 | 1 | 10 | 255 | 6 | 250 | 7.56e-123 | 350 |
| Msa1342070 | MtrunA17_Chr2g0300241 | 72.441 | 254 | 60 | 3 | 5 | 256 | 8 | 253 | 1.35e-121 | 347 |
| Msa1342070 | MtrunA17_Chr1g0150821 | 74.903 | 259 | 53 | 3 | 7 | 256 | 8 | 263 | 3.07e-121 | 346 |
| Msa1342070 | MtrunA17_Chr4g0076771 | 73.361 | 244 | 64 | 1 | 9 | 252 | 10 | 252 | 1.21e-117 | 337 |
| Msa1342070 | MtrunA17_Chr4g0006381 | 62.651 | 249 | 81 | 6 | 8 | 256 | 6 | 242 | 8.03e-93 | 273 |
| Msa1342070 | MtrunA17_Chr7g0242511 | 60.643 | 249 | 86 | 7 | 8 | 256 | 6 | 242 | 2.15e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342070 | AT5G20510.1 | 71.373 | 255 | 68 | 2 | 6 | 256 | 7 | 260 | 1.58e-122 | 349 |
| Msa1342070 | AT3G42790.1 | 73.896 | 249 | 58 | 4 | 7 | 255 | 8 | 249 | 2.05e-121 | 346 |
| Msa1342070 | AT2G02470.1 | 68.340 | 259 | 76 | 4 | 1 | 256 | 1 | 256 | 1.18e-108 | 314 |
| Msa1342070 | AT2G02470.2 | 68.359 | 256 | 72 | 4 | 1 | 256 | 1 | 247 | 2.84e-108 | 313 |
| Msa1342070 | AT1G14510.1 | 68.421 | 247 | 74 | 3 | 9 | 255 | 9 | 251 | 8.64e-108 | 312 |
| Msa1342070 | AT5G26210.1 | 71.483 | 263 | 58 | 3 | 1 | 255 | 1 | 254 | 1.23e-103 | 301 |
| Msa1342070 | AT5G05610.2 | 63.673 | 245 | 76 | 5 | 8 | 252 | 7 | 238 | 2.74e-97 | 285 |
| Msa1342070 | AT5G05610.1 | 63.673 | 245 | 76 | 5 | 8 | 252 | 7 | 238 | 2.74e-97 | 285 |
| Msa1342070 | AT5G20510.2 | 69.585 | 217 | 61 | 2 | 44 | 256 | 4 | 219 | 4.20e-96 | 281 |
| Msa1342070 | AT3G11200.1 | 63.200 | 250 | 82 | 5 | 3 | 252 | 4 | 243 | 1.61e-93 | 275 |
| Msa1342070 | AT5G20510.3 | 74.843 | 159 | 40 | 0 | 6 | 164 | 7 | 165 | 1.16e-81 | 243 |
| Msa1342070 | AT3G11200.2 | 62.212 | 217 | 72 | 5 | 36 | 252 | 24 | 230 | 1.30e-77 | 234 |
| Msa1342070 | AT2G02470.3 | 74.051 | 158 | 40 | 1 | 1 | 158 | 1 | 157 | 5.15e-71 | 218 |
Find 93 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAAGTGGAAGTGGGTTT+AGG | 0.270720 | tig0005025:-5964 | Msa1342070:intergenic |
| GTCTGCTTAACCTGAGGTTC+TGG | 0.298478 | tig0005025:-9466 | Msa1342070:intergenic |
| TGAAAGTGGAAGTGGGTTTA+GGG | 0.303717 | tig0005025:-5963 | Msa1342070:intergenic |
| TCAATATTTGAAGTTGTTAC+TGG | 0.306554 | tig0005025:+8553 | Msa1342070:CDS |
| TACTACTTTGGTGCCAGATT+TGG | 0.319173 | tig0005025:+8363 | Msa1342070:CDS |
| TGCTTGGCATTAACTTTGCC+AGG | 0.326435 | tig0005025:+8268 | Msa1342070:CDS |
| AGAGAAAGACTGGCTATCTT+TGG | 0.329748 | tig0005025:+8302 | Msa1342070:CDS |
| TGCTTGTTATTGTATCTTCA+AGG | 0.333225 | tig0005025:-9730 | Msa1342070:intergenic |
| TCCTCCACCTCATCATCTTT+AGG | 0.341682 | tig0005025:-9505 | Msa1342070:intergenic |
| GTTTCTGTTTGGCACATTGT+AGG | 0.378628 | tig0005025:+9820 | Msa1342070:three_prime_UTR |
| AGATGATGAGGTGGAGGAAC+TGG | 0.383921 | tig0005025:+9510 | Msa1342070:CDS |
| AGCACAGGCTCGGGAAGCTC+TGG | 0.385581 | tig0005025:-8249 | Msa1342070:intergenic |
| TACCGCTTTCGAGCTGGACT+TGG | 0.388039 | tig0005025:-8635 | Msa1342070:intergenic |
| ACAACAGCACAGTTCTATAA+TGG | 0.389093 | tig0005025:-9858 | Msa1342070:intergenic |
| ATTATGGCACTGATGAATTC+TGG | 0.392260 | tig0005025:+9587 | Msa1342070:CDS |
| GTTATTGGATAGTTTCTGTT+TGG | 0.395909 | tig0005025:+9809 | Msa1342070:three_prime_UTR |
| AGATTTGTCGAAGCCAAATC+TGG | 0.397894 | tig0005025:-8376 | Msa1342070:intergenic |
| GAGAAGAATGAAAGTGGAAG+TGG | 0.405729 | tig0005025:-5971 | Msa1342070:intergenic |
| GGCATTAACTTTGCCAGGGA+TGG | 0.411593 | tig0005025:+8273 | Msa1342070:CDS |
| GAGCTTCCCGAGCCTGTGCT+TGG | 0.413554 | tig0005025:+8252 | Msa1342070:CDS |
| TTATAGAACTGTGCTGTTGT+TGG | 0.416079 | tig0005025:+9861 | Msa1342070:three_prime_UTR |
| GAGAGTGAAGTGGGAGAGAC+AGG | 0.418291 | tig0005025:-5911 | Msa1342070:intergenic |
| TTGATATGCTCAGCCCTAGC+AGG | 0.419284 | tig0005025:-9664 | Msa1342070:intergenic |
| TATTTATGAATTGCTGACTT+TGG | 0.425547 | tig0005025:+9950 | Msa1342070:three_prime_UTR |
| TGGAAGAGTGAGAGTGAAGT+GGG | 0.428539 | tig0005025:-5920 | Msa1342070:intergenic |
| TTTCTCTTGCATGCCATCCC+TGG | 0.429424 | tig0005025:-8286 | Msa1342070:intergenic |
| AAGGAGAACCTGTGCTTGTA+TGG | 0.431624 | tig0005025:+8177 | Msa1342070:CDS |
| TTGCTGTTCACAGTGATTCA+TGG | 0.433165 | tig0005025:+8325 | Msa1342070:CDS |
| GGTGCATGCGGTGAGCATTA+TGG | 0.433315 | tig0005025:+9571 | Msa1342070:CDS |
| GATCATTGATCATGTTGAAC+AGG | 0.434639 | tig0005025:-8525 | Msa1342070:intergenic |
| GTTCTATACCCAATGTGATC+CGG | 0.448947 | tig0005025:+7612 | Msa1342070:CDS |
| ATCGCCATTGCGTACTACTT+TGG | 0.461307 | tig0005025:+8351 | Msa1342070:CDS |
| TTGACTTCCCACTGCTCACT+AGG | 0.465024 | tig0005025:-8204 | Msa1342070:intergenic |
| ATTATTTACCGCTTTCGAGC+TGG | 0.469549 | tig0005025:-8641 | Msa1342070:intergenic |
| ATCTGCGAGAAGTGGTTCCA+TGG | 0.475159 | tig0005025:+9622 | Msa1342070:CDS |
| CTCTTGTTGTTGCTGCATGA+TGG | 0.477879 | tig0005025:-9700 | Msa1342070:intergenic |
| TAACTTACCCGGATCACATT+GGG | 0.487332 | tig0005025:-7620 | Msa1342070:intergenic |
| GCGTCCATTGTAGCTTCTCC+TGG | 0.487437 | tig0005025:-6003 | Msa1342070:intergenic |
| CTCACCGCATGCACCACATA+AGG | 0.495356 | tig0005025:-9563 | Msa1342070:intergenic |
| GTAACAACTTCAAATATTGA+TGG | 0.502359 | tig0005025:-8550 | Msa1342070:intergenic |
| TTCTATACCCAATGTGATCC+GGG | 0.502678 | tig0005025:+7613 | Msa1342070:CDS |
| GCTTGTTATTGTATCTTCAA+GGG | 0.504632 | tig0005025:-9729 | Msa1342070:intergenic |
| GTTAATGCCAAGCACAGGCT+CGG | 0.508894 | tig0005025:-8259 | Msa1342070:intergenic |
| GGCTTTGTCTGCTTAACCTG+AGG | 0.513964 | tig0005025:-9472 | Msa1342070:intergenic |
| CTCTCTAGAAGAGCTTCGCT+TGG | 0.515759 | tig0005025:-5878 | Msa1342070:intergenic |
| TGATATGCTCAGCCCTAGCA+GGG | 0.516021 | tig0005025:-9663 | Msa1342070:intergenic |
| GTGTGAAGATCACCCCTGCT+AGG | 0.516439 | tig0005025:+9650 | Msa1342070:CDS |
| GCAGCGGGCTCCAGAACCTC+AGG | 0.519888 | tig0005025:+9456 | Msa1342070:intron |
| TGTTCTGAGAAGAATGAAAG+TGG | 0.519962 | tig0005025:-5977 | Msa1342070:intergenic |
| TTGAAAGAGAATTTCTGAAG+TGG | 0.524462 | tig0005025:-5940 | Msa1342070:intergenic |
| CTCATCAAAGCTCTCACCAC+TGG | 0.525319 | tig0005025:+6093 | Msa1342070:CDS |
| TTAATGTTATGAGGAAAACT+AGG | 0.525641 | tig0005025:+9990 | Msa1342070:three_prime_UTR |
| ATGGCATGCAAGAGAAAGAC+TGG | 0.534454 | tig0005025:+8292 | Msa1342070:CDS |
| TCTGGCGGAACTTCCTCAGC+AGG | 0.540129 | tig0005025:-8231 | Msa1342070:intergenic |
| ACAGGCTCGGGAAGCTCTGG+CGG | 0.540889 | tig0005025:-8246 | Msa1342070:intergenic |
| ACCTAAAGATGATGAGGTGG+AGG | 0.542306 | tig0005025:+9504 | Msa1342070:CDS |
| TTAATGCCAAGCACAGGCTC+GGG | 0.544159 | tig0005025:-8258 | Msa1342070:intergenic |
| GGTTAAGCAGACAAAGCCAT+TGG | 0.555690 | tig0005025:+9477 | Msa1342070:CDS |
| AAAACTTCCTCAACGGTGCG+TGG | 0.559807 | tig0005025:-6042 | Msa1342070:intergenic |
| GTGGAAGAGTGAGAGTGAAG+TGG | 0.563225 | tig0005025:-5921 | Msa1342070:intergenic |
| TGAAGATACAATAACAAGCA+AGG | 0.569386 | tig0005025:+9733 | Msa1342070:exon |
| TGACTTCCCACTGCTCACTA+GGG | 0.569521 | tig0005025:-8203 | Msa1342070:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.574011 | tig0005025:-9639 | Msa1342070:intergenic |
| ATCTCTGAAAACTTCCTCAA+CGG | 0.574665 | tig0005025:-6049 | Msa1342070:intergenic |
| TGGCTTCCCTAGTGAGCAGT+GGG | 0.576162 | tig0005025:+8197 | Msa1342070:CDS |
| GGAAGTCAATTTACCTGCTG+AGG | 0.576632 | tig0005025:+8218 | Msa1342070:CDS |
| TGAGGTGGAGGAACTGGACG+AGG | 0.577577 | tig0005025:+9516 | Msa1342070:CDS |
| GCAAAGTTAATGCCAAGCAC+AGG | 0.578595 | tig0005025:-8264 | Msa1342070:intergenic |
| ATTCTTCTCAGAACAAGACC+AGG | 0.580606 | tig0005025:+5985 | Msa1342070:five_prime_UTR |
| ATCCAAGTCCAGCTCGAAAG+CGG | 0.582695 | tig0005025:+8633 | Msa1342070:CDS |
| TAGGGAAGCCATACAAGCAC+AGG | 0.583243 | tig0005025:-8185 | Msa1342070:intergenic |
| AGAAGAATGAAAGTGGAAGT+GGG | 0.589079 | tig0005025:-5970 | Msa1342070:intergenic |
| TTGGCTTCGACAAATCTGAC+AGG | 0.592431 | tig0005025:+8382 | Msa1342070:CDS |
| TCATCTTTAGGTAACTCCAA+TGG | 0.594683 | tig0005025:-9493 | Msa1342070:intergenic |
| TGTGAAGATCACCCCTGCTA+GGG | 0.600442 | tig0005025:+9651 | Msa1342070:CDS |
| GCTTGGCATTAACTTTGCCA+GGG | 0.610233 | tig0005025:+8269 | Msa1342070:CDS |
| AAGACCAGGAGAAGCTACAA+TGG | 0.610651 | tig0005025:+5999 | Msa1342070:exon |
| GCTGTGACATCTGCGAGAAG+TGG | 0.611408 | tig0005025:+9614 | Msa1342070:CDS |
| GCAATTCAGTCGATGACTTG+TGG | 0.611722 | tig0005025:+9901 | Msa1342070:three_prime_UTR |
| TCTGCGAGAAGTGGTTCCAT+GGG | 0.616851 | tig0005025:+9623 | Msa1342070:CDS |
| GGAGTTACCTAAAGATGATG+AGG | 0.622708 | tig0005025:+9498 | Msa1342070:CDS |
| GTAACTTACCCGGATCACAT+TGG | 0.626802 | tig0005025:-7621 | Msa1342070:intergenic |
| GTATAATCCACGCACCGTTG+AGG | 0.643429 | tig0005025:+6035 | Msa1342070:CDS |
| GGCACCAAAGTAGTACGCAA+TGG | 0.648228 | tig0005025:-8355 | Msa1342070:intergenic |
| ATGGCTTCCCTAGTGAGCAG+TGG | 0.650269 | tig0005025:+8196 | Msa1342070:CDS |
| GAACATGGAGAGACCTTATG+TGG | 0.650525 | tig0005025:+9550 | Msa1342070:CDS |
| ACTTGGATTTGCTGCCACTG+TGG | 0.654768 | tig0005025:-8618 | Msa1342070:intergenic |
| TGCAGCAAAGAAACAAGTCA+AGG | 0.656590 | tig0005025:+8576 | Msa1342070:CDS |
| GTTACCTAAAGATGATGAGG+TGG | 0.657704 | tig0005025:+9501 | Msa1342070:CDS |
| GAGGAAGATGAAGATGAACA+TGG | 0.668055 | tig0005025:+9535 | Msa1342070:CDS |
| GATATGCTCAGCCCTAGCAG+GGG | 0.690376 | tig0005025:-9662 | Msa1342070:intergenic |
| GAGACCTTATGTGGTGCATG+CGG | 0.712511 | tig0005025:+9559 | Msa1342070:CDS |
| TCTTCAGTTTCAAACCACAG+TGG | 0.768394 | tig0005025:+8604 | Msa1342070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTCAAATTCATTTTT+TGG | + | tig0005025:6168-6187 | Msa1342070:intron | 10.0% |
| !!! | TATTTTTCAATTTTACTTAA+TGG | + | tig0005025:6443-6462 | Msa1342070:intron | 10.0% |
| !!! | ATTTTTCAATTTTACTTAAT+GGG | + | tig0005025:6444-6463 | Msa1342070:intron | 10.0% |
| !! | ATTTAAATATTTCAAATCAT+AGG | - | tig0005025:8816-8835 | Msa1342070:intergenic | 10.0% |
| !!! | ATATTTAATTTTCAAATTCA+TGG | + | tig0005025:9253-9272 | Msa1342070:intron | 10.0% |
| !!! | AACAAAAAAATGGTTTTTTA+AGG | - | tig0005025:6132-6151 | Msa1342070:intergenic | 15.0% |
| !! | GAAAAAAAAGAACAAAAAAA+TGG | - | tig0005025:6142-6161 | Msa1342070:intergenic | 15.0% |
| !!! | ATTGTTGTTTATAATATTAG+CGG | + | tig0005025:6312-6331 | Msa1342070:intron | 15.0% |
| !!! | TTATATATTTTTTTTACCAC+CGG | + | tig0005025:6699-6718 | Msa1342070:intron | 15.0% |
| !! | ATACTTGTTTATGAATATTA+GGG | - | tig0005025:7742-7761 | Msa1342070:intergenic | 15.0% |
| !!! | TATTGATTTTTGTGAAAAAA+TGG | + | tig0005025:7827-7846 | Msa1342070:intron | 15.0% |
| !!! | TGTTTTTCAATTTTACTTGA+TGG | + | tig0005025:6236-6255 | Msa1342070:intron | 20.0% |
| !!! | GTTTTTCAATTTTACTTGAT+GGG | + | tig0005025:6237-6256 | Msa1342070:intron | 20.0% |
| !! | TTTAAATTGAGTATTTGAGA+TGG | + | tig0005025:6556-6575 | Msa1342070:intron | 20.0% |
| !! | AAGTTCAAAAAAAAATTGCA+AGG | - | tig0005025:6584-6603 | Msa1342070:intergenic | 20.0% |
| !!! | AATTTAGCTAGATTTGAAAT+GGG | + | tig0005025:6806-6825 | Msa1342070:intron | 20.0% |
| !!! | TTTTACAAGTGTTTTTAATG+TGG | + | tig0005025:6842-6861 | Msa1342070:intron | 20.0% |
| !! | TTGAATTGTGTAATAATTCA+TGG | + | tig0005025:6919-6938 | Msa1342070:intron | 20.0% |
| !! | TGAATTGTGTAATAATTCAT+GGG | + | tig0005025:6920-6939 | Msa1342070:intron | 20.0% |
| !! | GATACTTGTTTATGAATATT+AGG | - | tig0005025:7743-7762 | Msa1342070:intergenic | 20.0% |
| !! | TTGAATATATATACTGAAGA+AGG | - | tig0005025:7886-7905 | Msa1342070:intergenic | 20.0% |
| !!! | AAACTATATTAGTTTCATCA+AGG | + | tig0005025:7938-7957 | Msa1342070:intron | 20.0% |
| !!! | AAGAACTCTTGTTTATATTA+AGG | + | tig0005025:8733-8752 | Msa1342070:intron | 20.0% |
| !! | TTATGCAAATATCTAGAAAA+TGG | + | tig0005025:8838-8857 | Msa1342070:intron | 20.0% |
| !! | ATGAAAAATATTGTTTGCAA+TGG | + | tig0005025:9086-9105 | Msa1342070:intron | 20.0% |
| !! | TTTCAAATTCATGGTTTAAA+TGG | + | tig0005025:9262-9281 | Msa1342070:intron | 20.0% |
| !!! | TTTCTAGACTTTTAAGTTAT+TGG | + | tig0005025:9794-9813 | Msa1342070:three_prime_UTR | 20.0% |
| !! | GAAGTTTTCAGAGATTTTAA+GGG | + | tig0005025:6057-6076 | Msa1342070:CDS | 25.0% |
| !! | GTTTTTCTTGAGAATTTCAT+TGG | + | tig0005025:6400-6419 | Msa1342070:intron | 25.0% |
| ! | GTGAAAAGTTCAAAATCAAA+AGG | - | tig0005025:6779-6798 | Msa1342070:intergenic | 25.0% |
| ! | CAATTTAGCTAGATTTGAAA+TGG | + | tig0005025:6805-6824 | Msa1342070:intron | 25.0% |
| !!! | AGTTTAGTTTGTTGTGAAAT+GGG | + | tig0005025:6962-6981 | Msa1342070:intron | 25.0% |
| ! | ATTTGAACTAAAACTACCAT+AGG | + | tig0005025:6993-7012 | Msa1342070:intron | 25.0% |
| !!! | ACAACTTAACAAGCTTTTTT+TGG | + | tig0005025:7159-7178 | Msa1342070:intron | 25.0% |
| ! | TGTCAAAAAAAAACTACCAA+GGG | - | tig0005025:7315-7334 | Msa1342070:intergenic | 25.0% |
| !! | AGTATCGAAAATGAATTATC+AGG | - | tig0005025:7450-7469 | Msa1342070:intergenic | 25.0% |
| !!! | TAATCAAGTTTTAAACTTGC+TGG | + | tig0005025:7693-7712 | Msa1342070:intron | 25.0% |
| ! | ATTCAAATTAATCTTACACG+AGG | + | tig0005025:7900-7919 | Msa1342070:intron | 25.0% |
| ! | TTCAAATTAATCTTACACGA+GGG | + | tig0005025:7901-7920 | Msa1342070:intron | 25.0% |
| !!! | TCTTTTTTCGGTATTCTATT+TGG | + | tig0005025:8114-8133 | Msa1342070:intron | 25.0% |
| ! | GGTTAAGTTATCATATGTAT+CGG | + | tig0005025:8437-8456 | Msa1342070:intron | 25.0% |
| ! | GTAACAACTTCAAATATTGA+TGG | - | tig0005025:8553-8572 | Msa1342070:intergenic | 25.0% |
| !! | TCAATATTTGAAGTTGTTAC+TGG | + | tig0005025:8553-8572 | Msa1342070:CDS | 25.0% |
| ! | TTGCTAGTTAGTTAATTATC+TGG | + | tig0005025:8781-8800 | Msa1342070:intron | 25.0% |
| ! | TGCTAGTTAGTTAATTATCT+GGG | + | tig0005025:8782-8801 | Msa1342070:intron | 25.0% |
| ! | GTTAAATCTGGTATCATATT+TGG | + | tig0005025:8909-8928 | Msa1342070:intron | 25.0% |
| !! | GATTTTCTTCTTCTTGATAA+TGG | + | tig0005025:8944-8963 | Msa1342070:intron | 25.0% |
| !! | AAGTTTTCTTTTGAATGCAT+GGG | - | tig0005025:9059-9078 | Msa1342070:intergenic | 25.0% |
| !! | AAAGTTTTCTTTTGAATGCA+TGG | - | tig0005025:9060-9079 | Msa1342070:intergenic | 25.0% |
| ! | TGATTGTGAACAATTTATCA+TGG | + | tig0005025:9128-9147 | Msa1342070:intron | 25.0% |
| !!! | GCAGTTTCTTTTTTATTGAT+TGG | + | tig0005025:9399-9418 | Msa1342070:intron | 25.0% |
| !! | GTTCTCATCTAATTTTTGAA+TGG | + | tig0005025:9429-9448 | Msa1342070:intron | 25.0% |
| !!! | TATTTATGAATTGCTGACTT+TGG | + | tig0005025:9950-9969 | Msa1342070:three_prime_UTR | 25.0% |
| !! | ATCTTTTCCTTAATGTTATG+AGG | + | tig0005025:9981-10000 | Msa1342070:three_prime_UTR | 25.0% |
| !! | TAGTTTTCCTCATAACATTA+AGG | - | tig0005025:9991-10010 | Msa1342070:intergenic | 25.0% |
| ! | TTAATGTTATGAGGAAAACT+AGG | + | tig0005025:9990-10009 | Msa1342070:three_prime_UTR | 25.0% |
| ! | TTGAAAGAGAATTTCTGAAG+TGG | - | tig0005025:5943-5962 | None:intergenic | 30.0% |
| ! | GGAAGTTTTCAGAGATTTTA+AGG | + | tig0005025:6056-6075 | Msa1342070:CDS | 30.0% |
| TTGAATGAAATCATGTGTCT+CGG | - | tig0005025:6679-6698 | Msa1342070:intergenic | 30.0% | |
| ACATGAAAATTAACCACATC+AGG | - | tig0005025:6895-6914 | Msa1342070:intergenic | 30.0% | |
| !! | GAGTTTAGTTTGTTGTGAAA+TGG | + | tig0005025:6961-6980 | Msa1342070:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | tig0005025:7112-7131 | Msa1342070:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | tig0005025:7113-7132 | Msa1342070:intron | 30.0% |
| !! | TTGTCATAAGCTGTTTTCAT+AGG | - | tig0005025:7143-7162 | Msa1342070:intergenic | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | + | tig0005025:7289-7308 | Msa1342070:intron | 30.0% | |
| CTGTCAAAAAAAAACTACCA+AGG | - | tig0005025:7316-7335 | Msa1342070:intergenic | 30.0% | |
| AAAAGTGAATGTAACTTACC+CGG | - | tig0005025:7634-7653 | Msa1342070:intergenic | 30.0% | |
| CAACGAAAAAAAATACTGCT+AGG | - | tig0005025:7998-8017 | Msa1342070:intergenic | 30.0% | |
| AAGAAAAATCCTGTAGAGAA+CGG | + | tig0005025:8057-8076 | Msa1342070:intron | 30.0% | |
| !!! | TTACAGGGCATTTCTTTTTT+CGG | + | tig0005025:8102-8121 | Msa1342070:intron | 30.0% |
| TTACTTGATTCTTTCAGAGA+AGG | + | tig0005025:8158-8177 | Msa1342070:intron | 30.0% | |
| TTAACCATAAATCTTACCAG+CGG | + | tig0005025:8416-8435 | Msa1342070:intron | 30.0% | |
| GCTAGTTAGTTAATTATCTG+GGG | + | tig0005025:8783-8802 | Msa1342070:intron | 30.0% | |
| ! | ATGATACCAGATTTAACTTC+TGG | - | tig0005025:8906-8925 | Msa1342070:intergenic | 30.0% |
| AATCTGGTATCATATTTGGA+TGG | + | tig0005025:8913-8932 | Msa1342070:intron | 30.0% | |
| !!! | GTTATTTTTGAAGTCTGATG+TGG | + | tig0005025:9161-9180 | Msa1342070:intron | 30.0% |
| ! | AAAGTACTCCAAATTTGTGA+AGG | + | tig0005025:9299-9318 | Msa1342070:intron | 30.0% |
| ATATACCACCTTCACAAATT+TGG | - | tig0005025:9310-9329 | Msa1342070:intergenic | 30.0% | |
| !!! | GCAGTTTCTTTTTTATTGCT+TGG | + | tig0005025:9369-9388 | Msa1342070:intron | 30.0% |
| !! | GCTTGTTATTGTATCTTCAA+GGG | - | tig0005025:9732-9751 | Msa1342070:intergenic | 30.0% |
| !! | TGCTTGTTATTGTATCTTCA+AGG | - | tig0005025:9733-9752 | Msa1342070:intergenic | 30.0% |
| TGAAGATACAATAACAAGCA+AGG | + | tig0005025:9733-9752 | Msa1342070:exon | 30.0% | |
| GTTATTGGATAGTTTCTGTT+TGG | + | tig0005025:9809-9828 | Msa1342070:three_prime_UTR | 30.0% | |
| AGAAGAATGAAAGTGGAAGT+GGG | - | tig0005025:5973-5992 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAAGAATGAAAG+TGG | - | tig0005025:5980-5999 | None:intergenic | 35.0% |
| ! | ATCTCTGAAAACTTCCTCAA+CGG | - | tig0005025:6052-6071 | Msa1342070:intergenic | 35.0% |
| !! | AGGTTTGTTAGATATACCAG+TGG | - | tig0005025:6112-6131 | Msa1342070:intergenic | 35.0% |
| ! | GGTCAACTGAATTTTCAACT+GGG | + | tig0005025:6258-6277 | Msa1342070:intron | 35.0% |
| ! | AACTGAATTTTCAACTGGGT+TGG | + | tig0005025:6262-6281 | Msa1342070:intron | 35.0% |
| !!! | GGTCAACTGAATTTTCAAGT+GGG | + | tig0005025:6465-6484 | Msa1342070:intron | 35.0% |
| ATGAAACAGTGACACATACA+AGG | - | tig0005025:6746-6765 | Msa1342070:intergenic | 35.0% | |
| !! | GTGTTTTTAATGTGGCTGTT+TGG | + | tig0005025:6850-6869 | Msa1342070:intron | 35.0% |
| GTAATAATTCATGGGTTCTC+AGG | + | tig0005025:6928-6947 | Msa1342070:intron | 35.0% | |
| !! | TAGTTTGTTGTGAAATGGGA+AGG | + | tig0005025:6966-6985 | Msa1342070:intron | 35.0% |
| TGAACTAAAACTACCATAGG+TGG | + | tig0005025:6996-7015 | Msa1342070:intron | 35.0% | |
| TAGGCAACAACTGACTAAAT+GGG | - | tig0005025:7052-7071 | Msa1342070:intergenic | 35.0% | |
| ATAGGCAACAACTGACTAAA+TGG | - | tig0005025:7053-7072 | Msa1342070:intergenic | 35.0% | |
| ! | GTTGTTGCCTATCATCTTTT+AGG | + | tig0005025:7061-7080 | Msa1342070:intron | 35.0% |
| AACAGGTCCTAAAAGATGAT+AGG | - | tig0005025:7071-7090 | Msa1342070:intergenic | 35.0% | |
| !!! | ATCATCTTTTAGGACCTGTT+TGG | + | tig0005025:7071-7090 | Msa1342070:intron | 35.0% |
| GTAGATAAACCAATCCAAAC+AGG | - | tig0005025:7088-7107 | Msa1342070:intergenic | 35.0% | |
| AGCTGTTTAATAAGCTATGC+TGG | - | tig0005025:7203-7222 | Msa1342070:intergenic | 35.0% | |
| ! | AGTTTTTCTTGCACTTGATG+TGG | + | tig0005025:7360-7379 | Msa1342070:intron | 35.0% |
| ACACATCATGTATCAATTGC+AGG | - | tig0005025:7405-7424 | Msa1342070:intergenic | 35.0% | |
| GAACACAACCAAAAAGTTCA+AGG | - | tig0005025:7502-7521 | Msa1342070:intergenic | 35.0% | |
| !! | AGTTACATTCACTTTTCACG+TGG | + | tig0005025:7638-7657 | Msa1342070:intron | 35.0% |
| !!! | CAAGTTTTAAACTTGCTGGA+TGG | + | tig0005025:7697-7716 | Msa1342070:intron | 35.0% |
| TTGTGAAAAAATGGCCACTT+TGG | + | tig0005025:7836-7855 | Msa1342070:intron | 35.0% | |
| AATGTGAAAACATGTGCTCA+AGG | - | tig0005025:7863-7882 | Msa1342070:intergenic | 35.0% | |
| ! | TGCCATGTTATACTGATTAC+AGG | + | tig0005025:8086-8105 | Msa1342070:intron | 35.0% |
| ! | GCCATGTTATACTGATTACA+GGG | + | tig0005025:8087-8106 | Msa1342070:intron | 35.0% |
| ! | CTCTGAAAGAATCAAGTAAC+AGG | - | tig0005025:8157-8176 | Msa1342070:intergenic | 35.0% |
| TTAACCGCTGGTAAGATTTA+TGG | - | tig0005025:8423-8442 | Msa1342070:intergenic | 35.0% | |
| ACATATGATAACTTAACCGC+TGG | - | tig0005025:8435-8454 | Msa1342070:intergenic | 35.0% | |
| CAATGAAAGTCATGAGTACA+TGG | - | tig0005025:8491-8510 | Msa1342070:intergenic | 35.0% | |
| GATCATTGATCATGTTGAAC+AGG | - | tig0005025:8528-8547 | Msa1342070:intergenic | 35.0% | |
| TTTCATGTGTACTGTTGTTC+TGG | + | tig0005025:9194-9213 | Msa1342070:intron | 35.0% | |
| ! | ATTTTTGAATGGTGAAGCAG+CGG | + | tig0005025:9440-9459 | Msa1342070:intron | 35.0% |
| TCATCTTTAGGTAACTCCAA+TGG | - | tig0005025:9496-9515 | Msa1342070:intergenic | 35.0% | |
| !! | ATTATGGCACTGATGAATTC+TGG | + | tig0005025:9587-9606 | Msa1342070:CDS | 35.0% |
| ACAACAGCACAGTTCTATAA+TGG | - | tig0005025:9861-9880 | Msa1342070:intergenic | 35.0% | |
| ! | TTATAGAACTGTGCTGTTGT+TGG | + | tig0005025:9861-9880 | Msa1342070:three_prime_UTR | 35.0% |
| !!! | GTTGTTGGTTTTGTTGTTGT+CGG | + | tig0005025:9876-9895 | Msa1342070:three_prime_UTR | 35.0% |
| ! | TGAAAGTGGAAGTGGGTTTA+GGG | - | tig0005025:5966-5985 | None:intergenic | 40.0% |
| ! | ATGAAAGTGGAAGTGGGTTT+AGG | - | tig0005025:5967-5986 | None:intergenic | 40.0% |
| GAGAAGAATGAAAGTGGAAG+TGG | - | tig0005025:5974-5993 | None:intergenic | 40.0% | |
| ATTCTTCTCAGAACAAGACC+AGG | + | tig0005025:5985-6004 | Msa1342070:five_prime_UTR | 40.0% | |
| ! | GGGTCAACTGAATTTTCAAC+TGG | + | tig0005025:6257-6276 | Msa1342070:intron | 40.0% |
| !! | GGGTCAACTGAATTTTCAAG+TGG | + | tig0005025:6464-6483 | Msa1342070:intron | 40.0% |
| ACACTTTCGATCAGAAGTCT+CGG | - | tig0005025:6630-6649 | Msa1342070:intergenic | 40.0% | |
| CTGATGATTGATACCTGATG+TGG | + | tig0005025:6879-6898 | Msa1342070:intron | 40.0% | |
| AATTCATGGGTTCTCAGGAA+TGG | + | tig0005025:6933-6952 | Msa1342070:intron | 40.0% | |
| ATTCATGGGTTCTCAGGAAT+GGG | + | tig0005025:6934-6953 | Msa1342070:intron | 40.0% | |
| AAAACTACCATAGGTGGATG+TGG | + | tig0005025:7002-7021 | Msa1342070:intron | 40.0% | |
| CAATAAACCACATCCACCTA+TGG | - | tig0005025:7012-7031 | Msa1342070:intergenic | 40.0% | |
| CATAGGTGGATGTGGTTTAT+TGG | + | tig0005025:7010-7029 | Msa1342070:intron | 40.0% | |
| !!! | CTTTTAGGACCTGTTTGGAT+TGG | + | tig0005025:7076-7095 | Msa1342070:intron | 40.0% |
| TTATGCGTAAGCGCTTATCA+TGG | + | tig0005025:7255-7274 | Msa1342070:intron | 40.0% | |
| ! | TTTTCTTGCACTTGATGTGG+AGG | + | tig0005025:7363-7382 | Msa1342070:intron | 40.0% |
| TTTCTTGCACTTGATGTGGA+GGG | + | tig0005025:7364-7383 | Msa1342070:intron | 40.0% | |
| TGACATTTCGTGCTTCATTG+TGG | + | tig0005025:7476-7495 | Msa1342070:intron | 40.0% | |
| !! | CATTGTGGCCTTGAACTTTT+TGG | + | tig0005025:7491-7510 | Msa1342070:intron | 40.0% |
| ! | CTGATGAACTATTTTCTGCC+TGG | + | tig0005025:7565-7584 | Msa1342070:intron | 40.0% |
| GTTCTATACCCAATGTGATC+CGG | + | tig0005025:7612-7631 | Msa1342070:CDS | 40.0% | |
| TTCTATACCCAATGTGATCC+GGG | + | tig0005025:7613-7632 | Msa1342070:CDS | 40.0% | |
| TAACTTACCCGGATCACATT+GGG | - | tig0005025:7623-7642 | Msa1342070:intergenic | 40.0% | |
| AATCCAAAAGACAAATGCCG+TGG | - | tig0005025:7674-7693 | Msa1342070:intergenic | 40.0% | |
| CTGGATGGATGAATGCAATA+GGG | + | tig0005025:7712-7731 | Msa1342070:intron | 40.0% | |
| TGGATGGATGAATGCAATAG+GGG | + | tig0005025:7713-7732 | Msa1342070:intron | 40.0% | |
| GCCCTGTAATCAGTATAACA+TGG | - | tig0005025:8091-8110 | Msa1342070:intergenic | 40.0% | |
| ! | AGAGAAAGACTGGCTATCTT+TGG | + | tig0005025:8302-8321 | Msa1342070:CDS | 40.0% |
| ! | TTGCTGTTCACAGTGATTCA+TGG | + | tig0005025:8325-8344 | Msa1342070:CDS | 40.0% |
| !! | TACTACTTTGGTGCCAGATT+TGG | + | tig0005025:8363-8382 | Msa1342070:CDS | 40.0% |
| AGATTTGTCGAAGCCAAATC+TGG | - | tig0005025:8379-8398 | Msa1342070:intergenic | 40.0% | |
| CATGACTTTCATTGTGATGC+AGG | + | tig0005025:8497-8516 | Msa1342070:intron | 40.0% | |
| TGCAGCAAAGAAACAAGTCA+AGG | + | tig0005025:8576-8595 | Msa1342070:CDS | 40.0% | |
| TCTTCAGTTTCAAACCACAG+TGG | + | tig0005025:8604-8623 | Msa1342070:CDS | 40.0% | |
| ATTATTTACCGCTTTCGAGC+TGG | - | tig0005025:8644-8663 | Msa1342070:intergenic | 40.0% | |
| ! | CCAGATTTAACTTCTGGAGA+TGG | - | tig0005025:8900-8919 | Msa1342070:intergenic | 40.0% |
| CCATCTCCAGAAGTTAAATC+TGG | + | tig0005025:8897-8916 | Msa1342070:intron | 40.0% | |
| ! | TTCTTTTGAATGCATGGGCA+AGG | - | tig0005025:9054-9073 | Msa1342070:intergenic | 40.0% |
| TTGTTTGCAATGGAAATCCC+TGG | + | tig0005025:9096-9115 | Msa1342070:intron | 40.0% | |
| ! | TTGAAGTCTGATGTGGATTG+TGG | + | tig0005025:9168-9187 | Msa1342070:intron | 40.0% |
| ! | TGAAGTCTGATGTGGATTGT+GGG | + | tig0005025:9169-9188 | Msa1342070:intron | 40.0% |
| ! | TGTTGTTCTGGATGTGATAG+CGG | + | tig0005025:9206-9225 | Msa1342070:intron | 40.0% |
| GTACTCCAAATTTGTGAAGG+TGG | + | tig0005025:9302-9321 | Msa1342070:intron | 40.0% | |
| ! | TTTTTGAATGGTGAAGCAGC+GGG | + | tig0005025:9441-9460 | Msa1342070:intron | 40.0% |
| GGAGTTACCTAAAGATGATG+AGG | + | tig0005025:9498-9517 | Msa1342070:CDS | 40.0% | |
| GTTACCTAAAGATGATGAGG+TGG | + | tig0005025:9501-9520 | Msa1342070:CDS | 40.0% | |
| GAGGAAGATGAAGATGAACA+TGG | + | tig0005025:9535-9554 | Msa1342070:CDS | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | - | tig0005025:9642-9661 | Msa1342070:intergenic | 40.0% | |
| GTTTCTGTTTGGCACATTGT+AGG | + | tig0005025:9820-9839 | Msa1342070:three_prime_UTR | 40.0% | |
| TGGAAGAGTGAGAGTGAAGT+GGG | - | tig0005025:5923-5942 | None:intergenic | 45.0% | |
| AAGACCAGGAGAAGCTACAA+TGG | + | tig0005025:5999-6018 | Msa1342070:exon | 45.0% | |
| GAAATCATGTGTCTCGGACA+CGG | - | tig0005025:6673-6692 | Msa1342070:intergenic | 45.0% | |
| TGTTTATCCAAACAGGCCCT+TGG | + | tig0005025:7296-7315 | Msa1342070:intron | 45.0% | |
| AAAACTACCAAGGGCCTGTT+TGG | - | tig0005025:7306-7325 | Msa1342070:intergenic | 45.0% | |
| GTAACTTACCCGGATCACAT+TGG | - | tig0005025:7624-7643 | Msa1342070:intergenic | 45.0% | |
| GCTGGATGGATGAATGCAAT+AGG | + | tig0005025:7711-7730 | Msa1342070:intron | 45.0% | |
| GCAAGTAATCCGTTCTCTAC+AGG | - | tig0005025:8069-8088 | Msa1342070:intergenic | 45.0% | |
| AAGGAGAACCTGTGCTTGTA+TGG | + | tig0005025:8177-8196 | Msa1342070:CDS | 45.0% | |
| GGAAGTCAATTTACCTGCTG+AGG | + | tig0005025:8218-8237 | Msa1342070:CDS | 45.0% | |
| GCAAAGTTAATGCCAAGCAC+AGG | - | tig0005025:8267-8286 | Msa1342070:intergenic | 45.0% | |
| TGCTTGGCATTAACTTTGCC+AGG | + | tig0005025:8268-8287 | Msa1342070:CDS | 45.0% | |
| GCTTGGCATTAACTTTGCCA+GGG | + | tig0005025:8269-8288 | Msa1342070:CDS | 45.0% | |
| ATGGCATGCAAGAGAAAGAC+TGG | + | tig0005025:8292-8311 | Msa1342070:CDS | 45.0% | |
| ATCGCCATTGCGTACTACTT+TGG | + | tig0005025:8351-8370 | Msa1342070:CDS | 45.0% | |
| TTGGCTTCGACAAATCTGAC+AGG | + | tig0005025:8382-8401 | Msa1342070:CDS | 45.0% | |
| TTTGCAATGGAAATCCCTGG+AGG | + | tig0005025:9099-9118 | Msa1342070:intron | 45.0% | |
| CACAATCACAATAGCCTCCA+GGG | - | tig0005025:9116-9135 | Msa1342070:intergenic | 45.0% | |
| TCACAATCACAATAGCCTCC+AGG | - | tig0005025:9117-9136 | Msa1342070:intergenic | 45.0% | |
| GGTTAAGCAGACAAAGCCAT+TGG | + | tig0005025:9477-9496 | Msa1342070:CDS | 45.0% | |
| ACCTAAAGATGATGAGGTGG+AGG | + | tig0005025:9504-9523 | Msa1342070:CDS | 45.0% | |
| TCCTCCACCTCATCATCTTT+AGG | - | tig0005025:9508-9527 | Msa1342070:intergenic | 45.0% | |
| GAACATGGAGAGACCTTATG+TGG | + | tig0005025:9550-9569 | Msa1342070:CDS | 45.0% | |
| !! | CTCTTGTTGTTGCTGCATGA+TGG | - | tig0005025:9703-9722 | Msa1342070:intergenic | 45.0% |
| GCAATTCAGTCGATGACTTG+TGG | + | tig0005025:9901-9920 | Msa1342070:three_prime_UTR | 45.0% | |
| !! | TAAACAAAAATTTATTTAAA+AGG | + | tig0005025:10018-10037 | Msa1342070:three_prime_UTR | 5.0% |
| ! | CTCTCTAGAAGAGCTTCGCT+TGG | - | tig0005025:5881-5900 | None:intergenic | 50.0% |
| GTGGAAGAGTGAGAGTGAAG+TGG | - | tig0005025:5924-5943 | None:intergenic | 50.0% | |
| GTATAATCCACGCACCGTTG+AGG | + | tig0005025:6035-6054 | Msa1342070:CDS | 50.0% | |
| AAAACTTCCTCAACGGTGCG+TGG | - | tig0005025:6045-6064 | Msa1342070:intergenic | 50.0% | |
| !! | GATTTTAAGGGTCGTCGTGC+TGG | + | tig0005025:6069-6088 | Msa1342070:CDS | 50.0% |
| CTCATCAAAGCTCTCACCAC+TGG | + | tig0005025:6093-6112 | Msa1342070:CDS | 50.0% | |
| ACCAGAGACAACACGTACAC+CGG | - | tig0005025:6721-6740 | Msa1342070:intergenic | 50.0% | |
| ACATCTGCAACAGCACAACC+AGG | - | tig0005025:7586-7605 | Msa1342070:intergenic | 50.0% | |
| !!! | CACGTGGTAGTTTTGTGCCA+CGG | + | tig0005025:7654-7673 | Msa1342070:intron | 50.0% |
| ! | GTGCCACGGCATTTGTCTTT+TGG | + | tig0005025:7668-7687 | Msa1342070:intron | 50.0% |
| CATGTGCTCAAGGACCAAAG+TGG | - | tig0005025:7853-7872 | Msa1342070:intergenic | 50.0% | |
| TAGGGAAGCCATACAAGCAC+AGG | - | tig0005025:8188-8207 | Msa1342070:intergenic | 50.0% | |
| TGACTTCCCACTGCTCACTA+GGG | - | tig0005025:8206-8225 | Msa1342070:intergenic | 50.0% | |
| TTGACTTCCCACTGCTCACT+AGG | - | tig0005025:8207-8226 | Msa1342070:intergenic | 50.0% | |
| TTAATGCCAAGCACAGGCTC+GGG | - | tig0005025:8261-8280 | Msa1342070:intergenic | 50.0% | |
| GTTAATGCCAAGCACAGGCT+CGG | - | tig0005025:8262-8281 | Msa1342070:intergenic | 50.0% | |
| GGCATTAACTTTGCCAGGGA+TGG | + | tig0005025:8273-8292 | Msa1342070:CDS | 50.0% | |
| TTTCTCTTGCATGCCATCCC+TGG | - | tig0005025:8289-8308 | Msa1342070:intergenic | 50.0% | |
| GGCACCAAAGTAGTACGCAA+TGG | - | tig0005025:8358-8377 | Msa1342070:intergenic | 50.0% | |
| !! | ACTTGGATTTGCTGCCACTG+TGG | - | tig0005025:8621-8640 | Msa1342070:intergenic | 50.0% |
| ATCCAAGTCCAGCTCGAAAG+CGG | + | tig0005025:8633-8652 | Msa1342070:CDS | 50.0% | |
| GTCTGCTTAACCTGAGGTTC+TGG | - | tig0005025:9469-9488 | Msa1342070:intergenic | 50.0% | |
| ! | GGCTTTGTCTGCTTAACCTG+AGG | - | tig0005025:9475-9494 | Msa1342070:intergenic | 50.0% |
| AGATGATGAGGTGGAGGAAC+TGG | + | tig0005025:9510-9529 | Msa1342070:CDS | 50.0% | |
| GAGACCTTATGTGGTGCATG+CGG | + | tig0005025:9559-9578 | Msa1342070:CDS | 50.0% | |
| ATCTGCGAGAAGTGGTTCCA+TGG | + | tig0005025:9622-9641 | Msa1342070:CDS | 50.0% | |
| TCTGCGAGAAGTGGTTCCAT+GGG | + | tig0005025:9623-9642 | Msa1342070:CDS | 50.0% | |
| TGTGAAGATCACCCCTGCTA+GGG | + | tig0005025:9651-9670 | Msa1342070:CDS | 50.0% | |
| TGATATGCTCAGCCCTAGCA+GGG | - | tig0005025:9666-9685 | Msa1342070:intergenic | 50.0% | |
| TTGATATGCTCAGCCCTAGC+AGG | - | tig0005025:9667-9686 | Msa1342070:intergenic | 50.0% | |
| GAGAGTGAAGTGGGAGAGAC+AGG | - | tig0005025:5914-5933 | None:intergenic | 55.0% | |
| GCGTCCATTGTAGCTTCTCC+TGG | - | tig0005025:6006-6025 | Msa1342070:intergenic | 55.0% | |
| AGAGACAACACGTACACCGG+TGG | - | tig0005025:6718-6737 | Msa1342070:intergenic | 55.0% | |
| ACCGGTGTACGTGTTGTCTC+TGG | + | tig0005025:6717-6736 | Msa1342070:intron | 55.0% | |
| ATGGCTTCCCTAGTGAGCAG+TGG | + | tig0005025:8196-8215 | Msa1342070:CDS | 55.0% | |
| TGGCTTCCCTAGTGAGCAGT+GGG | + | tig0005025:8197-8216 | Msa1342070:CDS | 55.0% | |
| TACCGCTTTCGAGCTGGACT+TGG | - | tig0005025:8638-8657 | Msa1342070:intergenic | 55.0% | |
| CTCACCGCATGCACCACATA+AGG | - | tig0005025:9566-9585 | Msa1342070:intergenic | 55.0% | |
| GGTGCATGCGGTGAGCATTA+TGG | + | tig0005025:9571-9590 | Msa1342070:CDS | 55.0% | |
| GCTGTGACATCTGCGAGAAG+TGG | + | tig0005025:9614-9633 | Msa1342070:CDS | 55.0% | |
| GTGTGAAGATCACCCCTGCT+AGG | + | tig0005025:9650-9669 | Msa1342070:CDS | 55.0% | |
| GATATGCTCAGCCCTAGCAG+GGG | - | tig0005025:9665-9684 | Msa1342070:intergenic | 55.0% | |
| TCTCGGACACGGAGACACGT+CGG | - | tig0005025:6662-6681 | Msa1342070:intergenic | 60.0% | |
| TCTGGCGGAACTTCCTCAGC+AGG | - | tig0005025:8234-8253 | Msa1342070:intergenic | 60.0% | |
| TGAGGTGGAGGAACTGGACG+AGG | + | tig0005025:9516-9535 | Msa1342070:CDS | 60.0% | |
| CACGGAGACACGTCGGACAC+AGG | - | tig0005025:6655-6674 | Msa1342070:intergenic | 65.0% | |
| ! | ACAGGCTCGGGAAGCTCTGG+CGG | - | tig0005025:8249-8268 | Msa1342070:intergenic | 65.0% |
| AGCACAGGCTCGGGAAGCTC+TGG | - | tig0005025:8252-8271 | Msa1342070:intergenic | 65.0% | |
| GAGCTTCCCGAGCCTGTGCT+TGG | + | tig0005025:8252-8271 | Msa1342070:CDS | 65.0% | |
| ! | GCAGCGGGCTCCAGAACCTC+AGG | + | tig0005025:9456-9475 | Msa1342070:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0005025 | gene | 5823 | 10051 | 5823 | ID=Msa1342070;Name=Msa1342070 |
| tig0005025 | mRNA | 5823 | 10051 | 5823 | ID=Msa1342070-mRNA-1;Parent=Msa1342070;Name=Msa1342070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=195|1|1|1|1|1|5|316|256 |
| tig0005025 | exon | 5823 | 6114 | 5823 | ID=Msa1342070-mRNA-1:exon:3443;Parent=Msa1342070-mRNA-1 |
| tig0005025 | exon | 7602 | 7634 | 7602 | ID=Msa1342070-mRNA-1:exon:3444;Parent=Msa1342070-mRNA-1 |
| tig0005025 | exon | 8175 | 8403 | 8175 | ID=Msa1342070-mRNA-1:exon:3445;Parent=Msa1342070-mRNA-1 |
| tig0005025 | exon | 8519 | 8654 | 8519 | ID=Msa1342070-mRNA-1:exon:3446;Parent=Msa1342070-mRNA-1 |
| tig0005025 | exon | 9460 | 10051 | 9460 | ID=Msa1342070-mRNA-1:exon:3447;Parent=Msa1342070-mRNA-1 |
| tig0005025 | five_prime_UTR | 5823 | 6017 | 5823 | ID=Msa1342070-mRNA-1:five_prime_utr;Parent=Msa1342070-mRNA-1 |
| tig0005025 | CDS | 6018 | 6114 | 6018 | ID=Msa1342070-mRNA-1:cds;Parent=Msa1342070-mRNA-1 |
| tig0005025 | CDS | 7602 | 7634 | 7602 | ID=Msa1342070-mRNA-1:cds;Parent=Msa1342070-mRNA-1 |
| tig0005025 | CDS | 8175 | 8403 | 8175 | ID=Msa1342070-mRNA-1:cds;Parent=Msa1342070-mRNA-1 |
| tig0005025 | CDS | 8519 | 8654 | 8519 | ID=Msa1342070-mRNA-1:cds;Parent=Msa1342070-mRNA-1 |
| tig0005025 | CDS | 9460 | 9735 | 9460 | ID=Msa1342070-mRNA-1:cds;Parent=Msa1342070-mRNA-1 |
| tig0005025 | three_prime_UTR | 9736 | 10051 | 9736 | ID=Msa1342070-mRNA-1:three_prime_utr;Parent=Msa1342070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
