Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343360 | KEH37359.1 | 96.875 | 160 | 5 | 0 | 1 | 160 | 110 | 269 | 7.65e-111 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343360 | sp|Q5VT66|MARC1_HUMAN | 33.117 | 154 | 82 | 4 | 2 | 149 | 197 | 335 | 4.79e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343360 | A0A072V5U2 | 96.875 | 160 | 5 | 0 | 1 | 160 | 110 | 269 | 3.65e-111 | 326 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627910 | Msa1343360 | 0.828224 | 1.012377e-54 | -8.615850e-47 |
| Msa0650190 | Msa1343360 | 0.800380 | 1.480789e-48 | -8.615850e-47 |
| Msa0734120 | Msa1343360 | 0.833368 | 5.553019e-56 | -8.615850e-47 |
| Msa1306760 | Msa1343360 | 0.800714 | 1.265896e-48 | -8.615850e-47 |
| Msa0328210 | Msa1343360 | 0.801417 | 9.095087e-49 | -8.615850e-47 |
| Msa1109570 | Msa1343360 | 0.834877 | 2.324771e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343360 | MtrunA17_Chr2g0296891 | 96.875 | 160 | 5 | 0 | 1 | 160 | 165 | 324 | 2.59e-114 | 327 |
| Msa1343360 | MtrunA17_Chr2g0296871 | 84.375 | 160 | 25 | 0 | 1 | 160 | 156 | 315 | 1.26e-99 | 289 |
| Msa1343360 | MtrunA17_Chr2g0296881 | 80.000 | 160 | 31 | 1 | 1 | 160 | 161 | 319 | 1.47e-92 | 271 |
| Msa1343360 | MtrunA17_Chr4g0013751 | 37.500 | 104 | 52 | 2 | 12 | 102 | 670 | 773 | 6.60e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343360 | AT1G30910.1 | 55.000 | 160 | 68 | 3 | 1 | 160 | 163 | 318 | 1.22e-58 | 185 |
| Msa1343360 | AT5G44720.1 | 53.704 | 162 | 71 | 4 | 1 | 160 | 149 | 308 | 2.11e-55 | 176 |
| Msa1343360 | AT5G44720.2 | 58.750 | 80 | 32 | 1 | 1 | 80 | 149 | 227 | 1.54e-28 | 105 |
| Msa1343360 | AT1G16540.1 | 31.452 | 124 | 66 | 3 | 12 | 116 | 682 | 805 | 4.57e-12 | 63.5 |
| Msa1343360 | AT1G16540.3 | 31.452 | 124 | 66 | 3 | 12 | 116 | 705 | 828 | 4.96e-12 | 63.2 |
Find 43 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTCAAGTGATTATT+TGG | 0.109769 | tig0006360:+21510 | None:intergenic |
| AAACAGGATCTCCCAATTTA+AGG | 0.238470 | tig0006360:+21703 | None:intergenic |
| ATCAGAAGCAGCTGCTTAAA+AGG | 0.251671 | tig0006360:-21655 | Msa1343360:exon |
| CAAATAATCACTTGACAATA+AGG | 0.268603 | tig0006360:-21509 | Msa1343360:three_prime_UTR |
| CTAAAACTCTCATGAAAATT+AGG | 0.280077 | tig0006360:-21925 | Msa1343360:CDS |
| CGGATAACCATCGCTGAAAA+AGG | 0.312183 | tig0006360:+22933 | None:intergenic |
| TGTTGTCCCTTAACATAATC+AGG | 0.320642 | tig0006360:+22961 | None:intergenic |
| AAAATGGAGATCAAATTTCT+TGG | 0.333110 | tig0006360:-21380 | Msa1343360:three_prime_UTR |
| GGATGGAAAAGTCCTTAAAT+TGG | 0.334605 | tig0006360:-21715 | Msa1343360:CDS |
| CTCCATAGGTCTTCAGAATA+TGG | 0.346111 | tig0006360:+22609 | None:intergenic |
| AGTAGACCCTGATTATGTTA+AGG | 0.423691 | tig0006360:-22970 | None:intergenic |
| GTAGACCCTGATTATGTTAA+GGG | 0.426663 | tig0006360:-22969 | None:intergenic |
| GGAGTGAATCTTCTGCTAAA+GGG | 0.428447 | tig0006360:-21737 | Msa1343360:CDS |
| GGTTGCTGAACTTTGCTTTG+AGG | 0.435451 | tig0006360:-21569 | Msa1343360:three_prime_UTR |
| AATGCATCTTTATTATGTCT+TGG | 0.435929 | tig0006360:-21535 | Msa1343360:three_prime_UTR |
| TTGGGTCTGAAACGATTCAT+AGG | 0.443699 | tig0006360:+22770 | None:intergenic |
| CTTGTGTTGCAGGTCTACTT+TGG | 0.453624 | tig0006360:-21780 | Msa1343360:intron |
| GTCAGAATGTAGTGTGGAAC+TGG | 0.456228 | tig0006360:-21758 | Msa1343360:CDS |
| CAATGACACAAACTTTATAG+TGG | 0.460184 | tig0006360:-21629 | Msa1343360:three_prime_UTR |
| TCCGTTCTTACTCGTATCTC+AGG | 0.462841 | tig0006360:-22916 | Msa1343360:CDS |
| CAAGCTGTGTGGCCGTTGTA+AGG | 0.470123 | tig0006360:-22550 | Msa1343360:intron |
| AGTATCCTTGTTGAAGGTTG+TGG | 0.470253 | tig0006360:-22633 | Msa1343360:CDS |
| GGGTGCAGTATCCTTGTTGA+AGG | 0.476951 | tig0006360:-22639 | Msa1343360:intron |
| GATGGAAAAGTCCTTAAATT+GGG | 0.484488 | tig0006360:-21714 | Msa1343360:CDS |
| TGGAGTGAATCTTCTGCTAA+AGG | 0.490383 | tig0006360:-21738 | Msa1343360:CDS |
| GACCATATTCTGAAGACCTA+TGG | 0.495076 | tig0006360:-22611 | Msa1343360:CDS |
| GATCAAGAGACAGCAATGTA+TGG | 0.499800 | tig0006360:-21959 | Msa1343360:CDS |
| ACTCTCATGAAAATTAGGTC+TGG | 0.502142 | tig0006360:-21920 | Msa1343360:CDS |
| TTATCTTGATATCTCTCCAT+AGG | 0.514673 | tig0006360:+22595 | None:intergenic |
| GAATCTTCTGCTAAAGGGGA+TGG | 0.520002 | tig0006360:-21732 | Msa1343360:CDS |
| CTGAAACGATTCATAGGTAT+CGG | 0.530503 | tig0006360:+22776 | None:intergenic |
| CTTACAACGGCCACACAGCT+TGG | 0.545752 | tig0006360:+22551 | None:intergenic |
| GGAGAGATATCAAGATAAGC+AGG | 0.547475 | tig0006360:-22590 | Msa1343360:CDS |
| GCTGTCTCTTGATCGACTGT+TGG | 0.574177 | tig0006360:+21968 | None:intergenic |
| GAGTGAATCTTCTGCTAAAG+GGG | 0.583763 | tig0006360:-21736 | Msa1343360:CDS |
| ACCTGAGATACGAGTAAGAA+CGG | 0.587255 | tig0006360:+22913 | None:intergenic |
| AAGAACTCTTTACCTTACAA+CGG | 0.609464 | tig0006360:+22538 | None:intergenic |
| GTTGTCCCTTAACATAATCA+GGG | 0.628958 | tig0006360:+22962 | None:intergenic |
| TGCACTAAATGAGCTTCTAG+AGG | 0.630235 | tig0006360:-22801 | Msa1343360:CDS |
| TGATAATGCATCATTCATGA+TGG | 0.641528 | tig0006360:-21590 | Msa1343360:three_prime_UTR |
| ATGGTCCACAACCTTCAACA+AGG | 0.676913 | tig0006360:+22628 | None:intergenic |
| TTTCAAGGAGCCAAGCTGTG+TGG | 0.678047 | tig0006360:-22561 | Msa1343360:CDS |
| ACTTTGGTCAGAATGTAGTG+TGG | 0.687468 | tig0006360:-21764 | Msa1343360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACTTGTTATAAATACTA+TGG | + | tig0006360:22159-22178 | None:intergenic | 15.0% |
| !! | TATGTTGTAATTATAAAAAC+AGG | + | tig0006360:22898-22917 | None:intergenic | 15.0% |
| !! | ATCTATAATCTTAACAAAAA+TGG | - | tig0006360:22936-22955 | Msa1343360:CDS | 15.0% |
| !!! | TAAACTTGTTATAAATACTA+TGG | + | tig0006360:22159-22178 | None:intergenic | 15.0% |
| !! | TATGTTGTAATTATAAAAAC+AGG | + | tig0006360:22898-22917 | None:intergenic | 15.0% |
| !! | ATCTATAATCTTAACAAAAA+TGG | - | tig0006360:22936-22955 | Msa1343360:CDS | 15.0% |
| !! | TACATTATTACTAGACAAAA+AGG | + | tig0006360:21605-21624 | None:intergenic | 20.0% |
| !! | ATTCTTTCATAGTATAGTAT+TGG | - | tig0006360:21630-21649 | Msa1343360:three_prime_UTR | 20.0% |
| !!! | AGATCACATAATTGATATTT+TGG | - | tig0006360:21663-21682 | Msa1343360:CDS | 20.0% |
| !! | ATATATGTATATTGTTCCTA+TGG | + | tig0006360:21859-21878 | None:intergenic | 20.0% |
| !! | TTGATACATTATATATAGCA+TGG | + | tig0006360:21977-21996 | None:intergenic | 20.0% |
| !! | CTTTCTATTAATCAAACTTA+GGG | + | tig0006360:22191-22210 | None:intergenic | 20.0% |
| !! | AACAATGAATACACAATATT+TGG | + | tig0006360:22269-22288 | None:intergenic | 20.0% |
| !! | AACATGAATAATGCTTATTA+TGG | - | tig0006360:22334-22353 | Msa1343360:intron | 20.0% |
| !!! | TTTTTGTTTTTGTCACTATT+TGG | + | tig0006360:22451-22470 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGATAACATAAAC+AGG | + | tig0006360:22648-22667 | None:intergenic | 20.0% |
| !! | TACATTATTACTAGACAAAA+AGG | + | tig0006360:21605-21624 | None:intergenic | 20.0% |
| !! | ATTCTTTCATAGTATAGTAT+TGG | - | tig0006360:21630-21649 | Msa1343360:three_prime_UTR | 20.0% |
| !!! | AGATCACATAATTGATATTT+TGG | - | tig0006360:21663-21682 | Msa1343360:CDS | 20.0% |
| !! | ATATATGTATATTGTTCCTA+TGG | + | tig0006360:21859-21878 | None:intergenic | 20.0% |
| !! | TTGATACATTATATATAGCA+TGG | + | tig0006360:21977-21996 | None:intergenic | 20.0% |
| !! | CTTTCTATTAATCAAACTTA+GGG | + | tig0006360:22191-22210 | None:intergenic | 20.0% |
| !! | AACAATGAATACACAATATT+TGG | + | tig0006360:22269-22288 | None:intergenic | 20.0% |
| !! | AACATGAATAATGCTTATTA+TGG | - | tig0006360:22334-22353 | Msa1343360:intron | 20.0% |
| !!! | TTTTTGTTTTTGTCACTATT+TGG | + | tig0006360:22451-22470 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGATAACATAAAC+AGG | + | tig0006360:22648-22667 | None:intergenic | 20.0% |
| !!! | TTTTGTTACTTATTGCTTTC+AGG | - | tig0006360:21498-21517 | Msa1343360:three_prime_UTR | 25.0% |
| ! | GTATGGAGAAATTAATACTT+GGG | + | tig0006360:21583-21602 | None:intergenic | 25.0% |
| ! | TATTACTAGACAAAAAGGTA+TGG | + | tig0006360:21600-21619 | None:intergenic | 25.0% |
| ! | CATATAATATAGCCCTAATA+TGG | - | tig0006360:21832-21851 | Msa1343360:intron | 25.0% |
| ! | CCTTTCTATTAATCAAACTT+AGG | + | tig0006360:22192-22211 | None:intergenic | 25.0% |
| ! | CCTAAGTTTGATTAATAGAA+AGG | - | tig0006360:22189-22208 | Msa1343360:intron | 25.0% |
| !! | CAATATTTGGTAACAAAGTT+TGG | + | tig0006360:22256-22275 | None:intergenic | 25.0% |
| ! | GAATAATGCTTATTATGGTT+AGG | - | tig0006360:22339-22358 | Msa1343360:intron | 25.0% |
| !!! | ATTTTCATGAGAGTTTTAGT+TGG | + | tig0006360:22406-22425 | None:intergenic | 25.0% |
| ! | CTAAAACTCTCATGAAAATT+AGG | - | tig0006360:22407-22426 | Msa1343360:intron | 25.0% |
| ! | TAGTGACAAAAACAAAAAGA+TGG | - | tig0006360:22453-22472 | Msa1343360:intron | 25.0% |
| ! | AATGCATCTTTATTATGTCT+TGG | - | tig0006360:22797-22816 | Msa1343360:CDS | 25.0% |
| ! | CTTATTGTCAAGTGATTATT+TGG | + | tig0006360:22825-22844 | None:intergenic | 25.0% |
| ! | CAAATAATCACTTGACAATA+AGG | - | tig0006360:22823-22842 | Msa1343360:intron | 25.0% |
| ! | AAAATGGAGATCAAATTTCT+TGG | - | tig0006360:22952-22971 | Msa1343360:CDS | 25.0% |
| !!! | TTTTGTTACTTATTGCTTTC+AGG | - | tig0006360:21498-21517 | Msa1343360:three_prime_UTR | 25.0% |
| ! | GTATGGAGAAATTAATACTT+GGG | + | tig0006360:21583-21602 | None:intergenic | 25.0% |
| ! | TATTACTAGACAAAAAGGTA+TGG | + | tig0006360:21600-21619 | None:intergenic | 25.0% |
| ! | CATATAATATAGCCCTAATA+TGG | - | tig0006360:21832-21851 | Msa1343360:intron | 25.0% |
| ! | CCTTTCTATTAATCAAACTT+AGG | + | tig0006360:22192-22211 | None:intergenic | 25.0% |
| ! | CCTAAGTTTGATTAATAGAA+AGG | - | tig0006360:22189-22208 | Msa1343360:intron | 25.0% |
| !! | CAATATTTGGTAACAAAGTT+TGG | + | tig0006360:22256-22275 | None:intergenic | 25.0% |
| ! | GAATAATGCTTATTATGGTT+AGG | - | tig0006360:22339-22358 | Msa1343360:intron | 25.0% |
| !!! | ATTTTCATGAGAGTTTTAGT+TGG | + | tig0006360:22406-22425 | None:intergenic | 25.0% |
| ! | CTAAAACTCTCATGAAAATT+AGG | - | tig0006360:22407-22426 | Msa1343360:intron | 25.0% |
| ! | TAGTGACAAAAACAAAAAGA+TGG | - | tig0006360:22453-22472 | Msa1343360:intron | 25.0% |
| ! | AATGCATCTTTATTATGTCT+TGG | - | tig0006360:22797-22816 | Msa1343360:CDS | 25.0% |
| ! | CTTATTGTCAAGTGATTATT+TGG | + | tig0006360:22825-22844 | None:intergenic | 25.0% |
| ! | CAAATAATCACTTGACAATA+AGG | - | tig0006360:22823-22842 | Msa1343360:intron | 25.0% |
| ! | AAAATGGAGATCAAATTTCT+TGG | - | tig0006360:22952-22971 | Msa1343360:CDS | 25.0% |
| GGTATGGAGAAATTAATACT+TGG | + | tig0006360:21584-21603 | None:intergenic | 30.0% | |
| !!! | TAATTGATATTTTGGTGCCA+CGG | - | tig0006360:21671-21690 | Msa1343360:CDS | 30.0% |
| TTATCTTGATATCTCTCCAT+AGG | + | tig0006360:21740-21759 | None:intergenic | 30.0% | |
| ! | ATAAGCAGGTTTTCATTTCA+AGG | - | tig0006360:21756-21775 | Msa1343360:CDS | 30.0% |
| AAGAACTCTTTACCTTACAA+CGG | + | tig0006360:21797-21816 | None:intergenic | 30.0% | |
| TAATTTATCTAACCTGTTCG+AGG | - | tig0006360:22042-22061 | Msa1343360:intron | 30.0% | |
| ATAATGTAATTTCCTCGAAC+AGG | + | tig0006360:22057-22076 | None:intergenic | 30.0% | |
| ! | GAGATCAATTACTGATTAAC+AGG | - | tig0006360:22092-22111 | Msa1343360:intron | 30.0% |
| ATTCTGAATGAATGTCTCTT+TGG | - | tig0006360:22499-22518 | Msa1343360:intron | 30.0% | |
| GATGGAAAAGTCCTTAAATT+GGG | - | tig0006360:22618-22637 | Msa1343360:CDS | 30.0% | |
| CAATGACACAAACTTTATAG+TGG | - | tig0006360:22703-22722 | Msa1343360:intron | 30.0% | |
| ! | TGATAATGCATCATTCATGA+TGG | - | tig0006360:22742-22761 | Msa1343360:intron | 30.0% |
| GGTATGGAGAAATTAATACT+TGG | + | tig0006360:21584-21603 | None:intergenic | 30.0% | |
| !!! | TAATTGATATTTTGGTGCCA+CGG | - | tig0006360:21671-21690 | Msa1343360:CDS | 30.0% |
| TTATCTTGATATCTCTCCAT+AGG | + | tig0006360:21740-21759 | None:intergenic | 30.0% | |
| ! | ATAAGCAGGTTTTCATTTCA+AGG | - | tig0006360:21756-21775 | Msa1343360:CDS | 30.0% |
| AAGAACTCTTTACCTTACAA+CGG | + | tig0006360:21797-21816 | None:intergenic | 30.0% | |
| TAATTTATCTAACCTGTTCG+AGG | - | tig0006360:22042-22061 | Msa1343360:intron | 30.0% | |
| ATAATGTAATTTCCTCGAAC+AGG | + | tig0006360:22057-22076 | None:intergenic | 30.0% | |
| ! | GAGATCAATTACTGATTAAC+AGG | - | tig0006360:22092-22111 | Msa1343360:intron | 30.0% |
| ATTCTGAATGAATGTCTCTT+TGG | - | tig0006360:22499-22518 | Msa1343360:intron | 30.0% | |
| GATGGAAAAGTCCTTAAATT+GGG | - | tig0006360:22618-22637 | Msa1343360:CDS | 30.0% | |
| CAATGACACAAACTTTATAG+TGG | - | tig0006360:22703-22722 | Msa1343360:intron | 30.0% | |
| ! | TGATAATGCATCATTCATGA+TGG | - | tig0006360:22742-22761 | Msa1343360:intron | 30.0% |
| TGTTGTCCCTTAACATAATC+AGG | + | tig0006360:21374-21393 | None:intergenic | 35.0% | |
| CTGAAACGATTCATAGGTAT+CGG | + | tig0006360:21559-21578 | None:intergenic | 35.0% | |
| !!! | AATTGATATTTTGGTGCCAC+GGG | - | tig0006360:21672-21691 | Msa1343360:CDS | 35.0% |
| TGTTCCTATGGACCATATTA+GGG | + | tig0006360:21847-21866 | None:intergenic | 35.0% | |
| TTGTTCCTATGGACCATATT+AGG | + | tig0006360:21848-21867 | None:intergenic | 35.0% | |
| ! | TTGCTATATGATGATGTAGC+CGG | - | tig0006360:21896-21915 | Msa1343360:CDS | 35.0% |
| CAAAAACATTATCCAACCTC+CGG | + | tig0006360:21918-21937 | None:intergenic | 35.0% | |
| ACTCTCATGAAAATTAGGTC+TGG | - | tig0006360:22412-22431 | Msa1343360:intron | 35.0% | |
| ACATGAAATACTTGTGTTGC+AGG | - | tig0006360:22542-22561 | Msa1343360:intron | 35.0% | |
| GGATGGAAAAGTCCTTAAAT+TGG | - | tig0006360:22617-22636 | Msa1343360:CDS | 35.0% | |
| AAACAGGATCTCCCAATTTA+AGG | + | tig0006360:22632-22651 | None:intergenic | 35.0% | |
| TGTTGTCCCTTAACATAATC+AGG | + | tig0006360:21374-21393 | None:intergenic | 35.0% | |
| CTGAAACGATTCATAGGTAT+CGG | + | tig0006360:21559-21578 | None:intergenic | 35.0% | |
| !!! | AATTGATATTTTGGTGCCAC+GGG | - | tig0006360:21672-21691 | Msa1343360:CDS | 35.0% |
| TGTTCCTATGGACCATATTA+GGG | + | tig0006360:21847-21866 | None:intergenic | 35.0% | |
| TTGTTCCTATGGACCATATT+AGG | + | tig0006360:21848-21867 | None:intergenic | 35.0% | |
| ! | TTGCTATATGATGATGTAGC+CGG | - | tig0006360:21896-21915 | Msa1343360:CDS | 35.0% |
| CAAAAACATTATCCAACCTC+CGG | + | tig0006360:21918-21937 | None:intergenic | 35.0% | |
| ACTCTCATGAAAATTAGGTC+TGG | - | tig0006360:22412-22431 | Msa1343360:intron | 35.0% | |
| ACATGAAATACTTGTGTTGC+AGG | - | tig0006360:22542-22561 | Msa1343360:intron | 35.0% | |
| GGATGGAAAAGTCCTTAAAT+TGG | - | tig0006360:22617-22636 | Msa1343360:CDS | 35.0% | |
| AAACAGGATCTCCCAATTTA+AGG | + | tig0006360:22632-22651 | None:intergenic | 35.0% | |
| ACCTGAGATACGAGTAAGAA+CGG | + | tig0006360:21422-21441 | None:intergenic | 40.0% | |
| TGCACTAAATGAGCTTCTAG+AGG | - | tig0006360:21531-21550 | Msa1343360:three_prime_UTR | 40.0% | |
| ! | TTGGGTCTGAAACGATTCAT+AGG | + | tig0006360:21565-21584 | None:intergenic | 40.0% |
| !!! | ATTGATATTTTGGTGCCACG+GGG | - | tig0006360:21673-21692 | Msa1343360:CDS | 40.0% |
| AGTATCCTTGTTGAAGGTTG+TGG | - | tig0006360:21699-21718 | Msa1343360:CDS | 40.0% | |
| ! | GACCATATTCTGAAGACCTA+TGG | - | tig0006360:21721-21740 | Msa1343360:CDS | 40.0% |
| CTCCATAGGTCTTCAGAATA+TGG | + | tig0006360:21726-21745 | None:intergenic | 40.0% | |
| GGAGAGATATCAAGATAAGC+AGG | - | tig0006360:21742-21761 | Msa1343360:CDS | 40.0% | |
| ATAGCCCTAATATGGTCCAT+AGG | - | tig0006360:21840-21859 | Msa1343360:intron | 40.0% | |
| GCATGGAACACAATAGAGAA+GGG | + | tig0006360:21960-21979 | None:intergenic | 40.0% | |
| AGCATGGAACACAATAGAGA+AGG | + | tig0006360:21961-21980 | None:intergenic | 40.0% | |
| TGCTCTATAGTCGGAGATAT+AGG | - | tig0006360:22221-22240 | Msa1343360:intron | 40.0% | |
| GTCGGAGATATAGGCATATT+TGG | - | tig0006360:22230-22249 | Msa1343360:intron | 40.0% | |
| GATCAAGAGACAGCAATGTA+TGG | - | tig0006360:22373-22392 | Msa1343360:intron | 40.0% | |
| ACTTTGGTCAGAATGTAGTG+TGG | - | tig0006360:22568-22587 | Msa1343360:CDS | 40.0% | |
| TGGAGTGAATCTTCTGCTAA+AGG | - | tig0006360:22594-22613 | Msa1343360:CDS | 40.0% | |
| GGAGTGAATCTTCTGCTAAA+GGG | - | tig0006360:22595-22614 | Msa1343360:CDS | 40.0% | |
| GAGTGAATCTTCTGCTAAAG+GGG | - | tig0006360:22596-22615 | Msa1343360:CDS | 40.0% | |
| ! | TTTTAAGCAGCTGCTTCTGA+TGG | + | tig0006360:22678-22697 | None:intergenic | 40.0% |
| ATCAGAAGCAGCTGCTTAAA+AGG | - | tig0006360:22677-22696 | Msa1343360:intron | 40.0% | |
| ACCTGAGATACGAGTAAGAA+CGG | + | tig0006360:21422-21441 | None:intergenic | 40.0% | |
| TGCACTAAATGAGCTTCTAG+AGG | - | tig0006360:21531-21550 | Msa1343360:three_prime_UTR | 40.0% | |
| ! | TTGGGTCTGAAACGATTCAT+AGG | + | tig0006360:21565-21584 | None:intergenic | 40.0% |
| !!! | ATTGATATTTTGGTGCCACG+GGG | - | tig0006360:21673-21692 | Msa1343360:CDS | 40.0% |
| AGTATCCTTGTTGAAGGTTG+TGG | - | tig0006360:21699-21718 | Msa1343360:CDS | 40.0% | |
| ! | GACCATATTCTGAAGACCTA+TGG | - | tig0006360:21721-21740 | Msa1343360:CDS | 40.0% |
| CTCCATAGGTCTTCAGAATA+TGG | + | tig0006360:21726-21745 | None:intergenic | 40.0% | |
| GGAGAGATATCAAGATAAGC+AGG | - | tig0006360:21742-21761 | Msa1343360:CDS | 40.0% | |
| ATAGCCCTAATATGGTCCAT+AGG | - | tig0006360:21840-21859 | Msa1343360:intron | 40.0% | |
| GCATGGAACACAATAGAGAA+GGG | + | tig0006360:21960-21979 | None:intergenic | 40.0% | |
| AGCATGGAACACAATAGAGA+AGG | + | tig0006360:21961-21980 | None:intergenic | 40.0% | |
| TGCTCTATAGTCGGAGATAT+AGG | - | tig0006360:22221-22240 | Msa1343360:intron | 40.0% | |
| GTCGGAGATATAGGCATATT+TGG | - | tig0006360:22230-22249 | Msa1343360:intron | 40.0% | |
| GATCAAGAGACAGCAATGTA+TGG | - | tig0006360:22373-22392 | Msa1343360:intron | 40.0% | |
| ACTTTGGTCAGAATGTAGTG+TGG | - | tig0006360:22568-22587 | Msa1343360:CDS | 40.0% | |
| TGGAGTGAATCTTCTGCTAA+AGG | - | tig0006360:22594-22613 | Msa1343360:CDS | 40.0% | |
| GGAGTGAATCTTCTGCTAAA+GGG | - | tig0006360:22595-22614 | Msa1343360:CDS | 40.0% | |
| GAGTGAATCTTCTGCTAAAG+GGG | - | tig0006360:22596-22615 | Msa1343360:CDS | 40.0% | |
| ! | TTTTAAGCAGCTGCTTCTGA+TGG | + | tig0006360:22678-22697 | None:intergenic | 40.0% |
| ATCAGAAGCAGCTGCTTAAA+AGG | - | tig0006360:22677-22696 | Msa1343360:intron | 40.0% | |
| AACCATCGCTGAAAAAGGTC+TGG | + | tig0006360:21397-21416 | None:intergenic | 45.0% | |
| CGGATAACCATCGCTGAAAA+AGG | + | tig0006360:21402-21421 | None:intergenic | 45.0% | |
| TCCGTTCTTACTCGTATCTC+AGG | - | tig0006360:21418-21437 | Msa1343360:three_prime_UTR | 45.0% | |
| AGGTCAGTCAAGTAGCAGTT+GGG | - | tig0006360:21438-21457 | Msa1343360:three_prime_UTR | 45.0% | |
| ATGGTCCACAACCTTCAACA+AGG | + | tig0006360:21707-21726 | None:intergenic | 45.0% | |
| ! | CTATATGATGATGTAGCCGG+AGG | - | tig0006360:21899-21918 | Msa1343360:CDS | 45.0% |
| TCGTGCAAAGCTAGTTGTAC+TGG | - | tig0006360:22119-22138 | Msa1343360:intron | 45.0% | |
| AACTGCAGCTGCTCTATAGT+CGG | - | tig0006360:22212-22231 | Msa1343360:intron | 45.0% | |
| CTTGTGTTGCAGGTCTACTT+TGG | - | tig0006360:22552-22571 | Msa1343360:CDS | 45.0% | |
| GTCAGAATGTAGTGTGGAAC+TGG | - | tig0006360:22574-22593 | Msa1343360:CDS | 45.0% | |
| GAATCTTCTGCTAAAGGGGA+TGG | - | tig0006360:22600-22619 | Msa1343360:CDS | 45.0% | |
| GGTTGCTGAACTTTGCTTTG+AGG | - | tig0006360:22763-22782 | Msa1343360:intron | 45.0% | |
| AACCATCGCTGAAAAAGGTC+TGG | + | tig0006360:21397-21416 | None:intergenic | 45.0% | |
| CGGATAACCATCGCTGAAAA+AGG | + | tig0006360:21402-21421 | None:intergenic | 45.0% | |
| TCCGTTCTTACTCGTATCTC+AGG | - | tig0006360:21418-21437 | Msa1343360:three_prime_UTR | 45.0% | |
| AGGTCAGTCAAGTAGCAGTT+GGG | - | tig0006360:21438-21457 | Msa1343360:three_prime_UTR | 45.0% | |
| ATGGTCCACAACCTTCAACA+AGG | + | tig0006360:21707-21726 | None:intergenic | 45.0% | |
| ! | CTATATGATGATGTAGCCGG+AGG | - | tig0006360:21899-21918 | Msa1343360:CDS | 45.0% |
| TCGTGCAAAGCTAGTTGTAC+TGG | - | tig0006360:22119-22138 | Msa1343360:intron | 45.0% | |
| AACTGCAGCTGCTCTATAGT+CGG | - | tig0006360:22212-22231 | Msa1343360:intron | 45.0% | |
| CTTGTGTTGCAGGTCTACTT+TGG | - | tig0006360:22552-22571 | Msa1343360:CDS | 45.0% | |
| GTCAGAATGTAGTGTGGAAC+TGG | - | tig0006360:22574-22593 | Msa1343360:CDS | 45.0% | |
| GAATCTTCTGCTAAAGGGGA+TGG | - | tig0006360:22600-22619 | Msa1343360:CDS | 45.0% | |
| GGTTGCTGAACTTTGCTTTG+AGG | - | tig0006360:22763-22782 | Msa1343360:intron | 45.0% | |
| !!! | CACCAGACCTTTTTCAGCGA+TGG | - | tig0006360:21392-21411 | Msa1343360:three_prime_UTR | 50.0% |
| CAGGTCAGTCAAGTAGCAGT+TGG | - | tig0006360:21437-21456 | Msa1343360:three_prime_UTR | 50.0% | |
| GGGTGCAGTATCCTTGTTGA+AGG | - | tig0006360:21693-21712 | Msa1343360:CDS | 50.0% | |
| TTTCAAGGAGCCAAGCTGTG+TGG | - | tig0006360:21771-21790 | Msa1343360:CDS | 50.0% | |
| ! | ATGATGATGTAGCCGGAGGT+TGG | - | tig0006360:21903-21922 | Msa1343360:CDS | 50.0% |
| GCTGTCTCTTGATCGACTGT+TGG | + | tig0006360:22367-22386 | None:intergenic | 50.0% | |
| !!! | CACCAGACCTTTTTCAGCGA+TGG | - | tig0006360:21392-21411 | Msa1343360:three_prime_UTR | 50.0% |
| CAGGTCAGTCAAGTAGCAGT+TGG | - | tig0006360:21437-21456 | Msa1343360:three_prime_UTR | 50.0% | |
| GGGTGCAGTATCCTTGTTGA+AGG | - | tig0006360:21693-21712 | Msa1343360:CDS | 50.0% | |
| TTTCAAGGAGCCAAGCTGTG+TGG | - | tig0006360:21771-21790 | Msa1343360:CDS | 50.0% | |
| ! | ATGATGATGTAGCCGGAGGT+TGG | - | tig0006360:21903-21922 | Msa1343360:CDS | 50.0% |
| GCTGTCTCTTGATCGACTGT+TGG | + | tig0006360:22367-22386 | None:intergenic | 50.0% | |
| AACAAGGATACTGCACCCCG+TGG | + | tig0006360:21691-21710 | None:intergenic | 55.0% | |
| CTTACAACGGCCACACAGCT+TGG | + | tig0006360:21784-21803 | None:intergenic | 55.0% | |
| CAAGCTGTGTGGCCGTTGTA+AGG | - | tig0006360:21782-21801 | Msa1343360:intron | 55.0% | |
| AACAAGGATACTGCACCCCG+TGG | + | tig0006360:21691-21710 | None:intergenic | 55.0% | |
| CTTACAACGGCCACACAGCT+TGG | + | tig0006360:21784-21803 | None:intergenic | 55.0% | |
| CAAGCTGTGTGGCCGTTGTA+AGG | - | tig0006360:21782-21801 | Msa1343360:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006360 | gene | 21371 | 22983 | 21371 | ID=Msa1343360;Name=Msa1343360 |
| tig0006360 | mRNA | 21371 | 22983 | 21371 | ID=Msa1343360-mRNA-1;Parent=Msa1343360;Name=Msa1343360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.8|1|1|0.8|5|288|160 |
| tig0006360 | exon | 21371 | 21790 | 21371 | ID=Msa1343360-mRNA-1:exon:4113;Parent=Msa1343360-mRNA-1 |
| tig0006360 | exon | 21880 | 21993 | 21880 | ID=Msa1343360-mRNA-1:exon:4112;Parent=Msa1343360-mRNA-1 |
| tig0006360 | exon | 22551 | 22653 | 22551 | ID=Msa1343360-mRNA-1:exon:4111;Parent=Msa1343360-mRNA-1 |
| tig0006360 | exon | 22770 | 22834 | 22770 | ID=Msa1343360-mRNA-1:exon:4110;Parent=Msa1343360-mRNA-1 |
| tig0006360 | exon | 22915 | 22983 | 22915 | ID=Msa1343360-mRNA-1:exon:4109;Parent=Msa1343360-mRNA-1 |
| tig0006360 | CDS | 22915 | 22983 | 22915 | ID=Msa1343360-mRNA-1:cds;Parent=Msa1343360-mRNA-1 |
| tig0006360 | CDS | 22770 | 22834 | 22770 | ID=Msa1343360-mRNA-1:cds;Parent=Msa1343360-mRNA-1 |
| tig0006360 | CDS | 22551 | 22653 | 22551 | ID=Msa1343360-mRNA-1:cds;Parent=Msa1343360-mRNA-1 |
| tig0006360 | CDS | 21880 | 21993 | 21880 | ID=Msa1343360-mRNA-1:cds;Parent=Msa1343360-mRNA-1 |
| tig0006360 | CDS | 21659 | 21790 | 21659 | ID=Msa1343360-mRNA-1:cds;Parent=Msa1343360-mRNA-1 |
| tig0006360 | three_prime_UTR | 21371 | 21658 | 21371 | ID=Msa1343360-mRNA-1:three_prime_utr;Parent=Msa1343360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
