AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650190 MtrunA17_Chr4g0042191 95.410 305 10 1 1 301 1 305 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650190 AT5G54540.1 34.472 322 165 10 1 301 1 297 3.40e-34 126

Find 107 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACAGCATTCCATATATT+TGG 0.098347 4_3:+56981320 None:intergenic
ATCTTTGATCTTATCTCTTT+TGG 0.151376 4_3:-56980439 Msa0650190:three_prime_UTR
AGGCTTCACGTCCGCGGTTT+TGG 0.226260 4_3:+56982478 None:intergenic
GCGTCGCTAGGTCAGGCTTC+AGG 0.268972 4_3:-56982583 Msa0650190:CDS
TAACTATTCCCAATATTATA+TGG 0.271397 4_3:-56980576 Msa0650190:three_prime_UTR
GCCTCTGCACACGTCGGTTT+CGG 0.293742 4_3:-56982459 Msa0650190:CDS
TTGCTTGTGACCCAAATATA+TGG 0.322907 4_3:-56981331 Msa0650190:CDS
TTTCTTGAACGCATGGCTTT+GGG 0.336909 4_3:-56980542 Msa0650190:three_prime_UTR
GCTAGCAACTGATTGGATAA+TGG 0.370522 4_3:-56982651 Msa0650190:exon
GACGCCGATGCCGGCGAGCT+TGG 0.375606 4_3:+56982601 None:intergenic
CGTCGCTAGGTCAGGCTTCA+GGG 0.385353 4_3:-56982582 Msa0650190:CDS
TGACAGCATTCCATATATTT+GGG 0.391615 4_3:+56981321 None:intergenic
TGCTGATGGAGGCAGTTTCA+TGG 0.399854 4_3:-56980922 Msa0650190:CDS
TTTCATGGGATTGGCAGTTA+TGG 0.406291 4_3:-56980874 Msa0650190:CDS
ATTGGCAGTTATGGTGATAA+TGG 0.408540 4_3:-56980865 Msa0650190:CDS
CTAGCAACTGATTGGATAAT+GGG 0.408637 4_3:-56982650 Msa0650190:exon
ATACTTTACCCGTTGATGTA+AGG 0.408721 4_3:-56980498 Msa0650190:three_prime_UTR
AGCCTCAACAAGACAATCCT+TGG 0.412702 4_3:+56981595 None:intergenic
TTCTTCGAATCACAGCTTGC+AGG 0.414030 4_3:-56981275 Msa0650190:intron
GCAGCCAAGCTCGCCGGCAT+CGG 0.414205 4_3:-56982605 Msa0650190:CDS
CAGCGAAGCTAGCAACTGAT+TGG 0.414342 4_3:-56982658 Msa0650190:five_prime_UTR
ATTTGTCTTTCTCAACTGTT+GGG 0.421154 4_3:+56980955 None:intergenic
GATTTGTCTTTCTCAACTGT+TGG 0.425812 4_3:+56980954 None:intergenic
TGAGGCTATTTCAAATCCTT+CGG 0.427999 4_3:-56981579 Msa0650190:CDS
GGCATCGGCGTCGCTAGGTC+AGG 0.434066 4_3:-56982590 Msa0650190:CDS
GAAGCTGACAGTTACTGAAA+TGG 0.440322 4_3:-56981012 Msa0650190:CDS
TTTCGGAGGATTTGAATGAC+TGG 0.442439 4_3:-56982442 Msa0650190:CDS
GGGAGGAAGTTTCATGGGAT+TGG 0.442750 4_3:-56980883 Msa0650190:CDS
ACATTGGCCCTTACATCAAC+GGG 0.446350 4_3:+56980490 None:intergenic
GGTTCTGTCTCCTTCTCCCA+AGG 0.446630 4_3:-56981612 Msa0650190:CDS
GCAACTGCAGATTCAACAAA+TGG 0.455044 4_3:-56981140 Msa0650190:intron
TAGCTCAAGTGTTGAGGCCC+AGG 0.460395 4_3:-56981522 Msa0650190:intron
TCGCCGGCATCGGCGTCGCT+AGG 0.463408 4_3:-56982595 Msa0650190:CDS
TTAGGATAAAGAGCAAATAG+AGG 0.467737 4_3:+56980414 None:intergenic
ACATTTCCTGACTGAGACTC+AGG 0.469584 4_3:+56981065 None:intergenic
CCTACGCCGAGAATGGTGTT+TGG 0.473022 4_3:-56982377 Msa0650190:CDS
CGAGACCACTGTTTCTCCGC+TGG 0.479377 4_3:+56982542 None:intergenic
ATCTCATGGTAGTGAAGTCT+TGG 0.480550 4_3:-56981633 Msa0650190:CDS
TCCCAAGGATTGTCTTGTTG+AGG 0.484050 4_3:-56981597 Msa0650190:CDS
TCCTCCGCTTCCTTCAACGT+CGG 0.485697 4_3:+56982347 None:intergenic
TATATTTGGGTCACAAGCAA+TGG 0.494737 4_3:+56981334 None:intergenic
CAAAGATAAAATGTTCAGAT+TGG 0.495605 4_3:+56980455 None:intergenic
TACTTTACCCGTTGATGTAA+GGG 0.499567 4_3:-56980497 Msa0650190:three_prime_UTR
GGCTTTGGGAAAGTGTGGAT+TGG 0.499673 4_3:-56980528 Msa0650190:three_prime_UTR
TTCTCAATTTGAGAATTAGC+AGG 0.502174 4_3:+56981659 None:intergenic
TGTCGTGGGAGGAAGTTTCA+TGG 0.507727 4_3:-56980889 Msa0650190:CDS
TGGAGAGCCTACGCCGAGAA+TGG 0.509702 4_3:-56982384 Msa0650190:CDS
CAGCGGAGAAACAGTGGTCT+CGG 0.510466 4_3:-56982541 Msa0650190:CDS
ACCTCTCCAAACACCATTCT+CGG 0.512931 4_3:+56982371 None:intergenic
TGACCTAGCGACGCCGATGC+CGG 0.514560 4_3:+56982592 None:intergenic
AAATCTTCAGCTGATGCTGA+TGG 0.518948 4_3:-56980936 Msa0650190:CDS
GAAAAGCCTGAGTCTCAGTC+AGG 0.524090 4_3:-56981071 Msa0650190:CDS
CATAAACAAATCACTTTCAT+CGG 0.525463 4_3:+56982412 None:intergenic
AAGCAACTGAAAAGCATGAA+TGG 0.528445 4_3:+56981544 None:intergenic
TTCGGAGGATTTGAATGACT+GGG 0.534180 4_3:-56982441 Msa0650190:CDS
CACATTGGCCCTTACATCAA+CGG 0.534331 4_3:+56980489 None:intergenic
GTTGCTTAGCTCAAGTGTTG+AGG 0.535470 4_3:-56981528 Msa0650190:CDS
CGAGAGAAAACTCTTAAATG+TGG 0.536644 4_3:+56980387 None:intergenic
CCCTCGTCGGCGATGAGGCG+CGG 0.537738 4_3:+56982516 None:intergenic
AGGACGGCAGCCAAGCTCGC+CGG 0.539761 4_3:-56982611 Msa0650190:CDS
GATTGGATAATGGGCGGTGG+CGG 0.542192 4_3:-56982641 Msa0650190:exon
AAAGCATGAATGGCATGCTT+AGG 0.548238 4_3:+56981554 None:intergenic
GCCTCAACAAGACAATCCTT+GGG 0.548704 4_3:+56981596 None:intergenic
AGTGATTTGTTTATGTCGAG+TGG 0.551557 4_3:-56982404 Msa0650190:CDS
GGTTCCGACGTTGAAGGAAG+CGG 0.551831 4_3:-56982351 Msa0650190:CDS
TTTGAGAATTAGCAGGTGAA+AGG 0.552733 4_3:+56981666 None:intergenic
GTCGTGGGAGGAAGTTTCAT+GGG 0.556777 4_3:-56980888 Msa0650190:CDS
TAGGATAAAGAGCAAATAGA+GGG 0.561174 4_3:+56980415 None:intergenic
CGCATGGCTTTGGGAAAGTG+TGG 0.565506 4_3:-56980533 Msa0650190:three_prime_UTR
TCGAAGAAACTAGTCACTGC+AGG 0.567121 4_3:+56981290 None:intergenic
ATGGATTATAAGAATGTCGT+GGG 0.569424 4_3:-56980903 Msa0650190:CDS
GAAATGGAGTCTTCATGCAC+AGG 0.574097 4_3:-56980650 Msa0650190:three_prime_UTR
CATGGATTATAAGAATGTCG+TGG 0.578660 4_3:-56980904 Msa0650190:CDS
CAAATTGAGAACTCATCTCA+TGG 0.582375 4_3:-56981647 Msa0650190:CDS
TGGAGAGGTTCCGACGTTGA+AGG 0.586309 4_3:-56982357 Msa0650190:CDS
CGGTGGCGGAACGATGAGGA+CGG 0.587249 4_3:-56982627 Msa0650190:CDS
GAAGGAAGCGGAGGAAGCCA+CGG 0.589709 4_3:-56982339 Msa0650190:CDS
ACAAGACAATCCTTGGGAGA+AGG 0.590276 4_3:+56981602 None:intergenic
ACCGCGCCTCATCGCCGACG+AGG 0.591542 4_3:-56982517 Msa0650190:CDS
GTCGCTAGGTCAGGCTTCAG+GGG 0.594901 4_3:-56982581 Msa0650190:CDS
TCTGCACACGTCGGTTTCGG+AGG 0.596631 4_3:-56982456 Msa0650190:CDS
CGCGTGCTTCAATTCAGCCG+TGG 0.599375 4_3:+56982322 None:intergenic
CCAAACACCATTCTCGGCGT+AGG 0.600029 4_3:+56982377 None:intergenic
AAGGGCCAATGTGTTCGTCA+TGG 0.603657 4_3:-56980479 Msa0650190:three_prime_UTR
CCGCGCCTCATCGCCGACGA+GGG 0.606141 4_3:-56982516 Msa0650190:intron
GTGCAGAGGCTTCACGTCCG+CGG 0.607881 4_3:+56982472 None:intergenic
TCCGAAACCGACGTGTGCAG+AGG 0.608510 4_3:+56982458 None:intergenic
CGTATCCAGCGGAGAAACAG+TGG 0.608528 4_3:-56982547 Msa0650190:CDS
GCCGAGAATGGTGTTTGGAG+AGG 0.611441 4_3:-56982372 Msa0650190:CDS
TCTTCAGCTGATGCTGATGG+AGG 0.613380 4_3:-56980933 Msa0650190:CDS
GTCAGGCTTCAGGGGAACCA+CGG 0.616706 4_3:-56982573 Msa0650190:CDS
ACTGATTGGATAATGGGCGG+TGG 0.623434 4_3:-56982644 Msa0650190:exon
CCCTGAGATAAAACCCTCGT+CGG 0.630010 4_3:+56982503 None:intergenic
TGGGCGGTGGCGGAACGATG+AGG 0.643041 4_3:-56982631 Msa0650190:CDS
ATGGCATGCTTAGGCACCGA+AGG 0.649369 4_3:+56981563 None:intergenic
TTGGTCCATGACGAACACAT+TGG 0.651624 4_3:+56980474 None:intergenic
TCCGACGTTGAAGGAAGCGG+AGG 0.652735 4_3:-56982348 Msa0650190:CDS
TAAAACCCTCGTCGGCGATG+AGG 0.653238 4_3:+56982511 None:intergenic
TGGAGTCTTCATGCACAGGT+CGG 0.656975 4_3:-56980646 Msa0650190:three_prime_UTR
GATTATAAGAATGTCGTGGG+AGG 0.659415 4_3:-56980900 Msa0650190:CDS
AGAGAGCCTAAACACTCACT+AGG 0.661053 4_3:-56980830 Msa0650190:exon
ATCTCAGGGGACCAAAACCG+CGG 0.669256 4_3:-56982489 Msa0650190:intron
GCAACTGATTGGATAATGGG+CGG 0.691401 4_3:-56982647 Msa0650190:exon
AAAACGACAAGAAAGGTCGA+CGG 0.693646 4_3:+56980795 None:intergenic
CTCCGCTGGATACGTAACCG+TGG 0.694899 4_3:+56982556 None:intergenic
CGTGAAGCCTCTGCACACGT+CGG 0.703926 4_3:-56982465 Msa0650190:CDS
AACCACGGTTACGTATCCAG+CGG 0.727599 4_3:-56982558 Msa0650190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATGTTTAATTTTGATTT+AGG - chr4_3:56980812-56980831 Msa0650190:three_prime_UTR 15.0%
!!! TATTATTTGTTAGTTTCTTT+TGG - chr4_3:56980885-56980904 Msa0650190:CDS 15.0%
!! ATAAGTAAATATAACTTATC+AGG + chr4_3:56981276-56981295 None:intergenic 15.0%
!!! TTGATGTTTAATTTTGATTT+AGG - chr4_3:56980812-56980831 Msa0650190:three_prime_UTR 15.0%
!!! TATTATTTGTTAGTTTCTTT+TGG - chr4_3:56980885-56980904 Msa0650190:CDS 15.0%
!! ATAAGTAAATATAACTTATC+AGG + chr4_3:56981276-56981295 None:intergenic 15.0%
!!! TTTTGGTTGATAATAGTTTT+AGG - chr4_3:56980902-56980921 Msa0650190:CDS 20.0%
!!! TTTGGTTGATAATAGTTTTA+GGG - chr4_3:56980903-56980922 Msa0650190:CDS 20.0%
!! AGATAAAAACACAAAAAAAG+TGG + chr4_3:56981844-56981863 None:intergenic 20.0%
!!! AGGAAATGTTTTTGATTTTA+TGG - chr4_3:56981998-56982017 Msa0650190:intron 20.0%
!!! GGAAATGTTTTTGATTTTAT+GGG - chr4_3:56981999-56982018 Msa0650190:intron 20.0%
!!! GAATATGTTTTGAAAGAAAT+TGG + chr4_3:56982075-56982094 None:intergenic 20.0%
!!! TTTTCTTTTTTGAGTAGAAA+TGG - chr4_3:56982383-56982402 Msa0650190:CDS 20.0%
!! TAACTATTCCCAATATTATA+TGG - chr4_3:56982473-56982492 Msa0650190:CDS 20.0%
!! GTGAAAAACCATATAATATT+GGG + chr4_3:56982484-56982503 None:intergenic 20.0%
!! AGTGAAAAACCATATAATAT+TGG + chr4_3:56982485-56982504 None:intergenic 20.0%
!!! TTTTGGTTGATAATAGTTTT+AGG - chr4_3:56980902-56980921 Msa0650190:CDS 20.0%
!!! TTTGGTTGATAATAGTTTTA+GGG - chr4_3:56980903-56980922 Msa0650190:CDS 20.0%
!! AGATAAAAACACAAAAAAAG+TGG + chr4_3:56981844-56981863 None:intergenic 20.0%
!!! AGGAAATGTTTTTGATTTTA+TGG - chr4_3:56981998-56982017 Msa0650190:intron 20.0%
!!! GGAAATGTTTTTGATTTTAT+GGG - chr4_3:56981999-56982018 Msa0650190:intron 20.0%
!!! GAATATGTTTTGAAAGAAAT+TGG + chr4_3:56982075-56982094 None:intergenic 20.0%
!!! TTTTCTTTTTTGAGTAGAAA+TGG - chr4_3:56982383-56982402 Msa0650190:CDS 20.0%
!! TAACTATTCCCAATATTATA+TGG - chr4_3:56982473-56982492 Msa0650190:CDS 20.0%
!! GTGAAAAACCATATAATATT+GGG + chr4_3:56982484-56982503 None:intergenic 20.0%
!! AGTGAAAAACCATATAATAT+TGG + chr4_3:56982485-56982504 None:intergenic 20.0%
! CATAAACAAATCACTTTCAT+CGG + chr4_3:56980640-56980659 None:intergenic 25.0%
! ATTGAATTGTCGATATTATG+TGG - chr4_3:56981086-56981105 Msa0650190:CDS 25.0%
! TTGAATTGTCGATATTATGT+GGG - chr4_3:56981087-56981106 Msa0650190:CDS 25.0%
! ATATATATGCTATTCTTGAC+TGG - chr4_3:56981130-56981149 Msa0650190:CDS 25.0%
! GGTTAATTTCTCAGTAAATT+TGG - chr4_3:56981188-56981207 Msa0650190:intron 25.0%
! AACAAATCAAAATACTCAGA+TGG + chr4_3:56981237-56981256 None:intergenic 25.0%
! TACTTATTATGTGTTTATCC+TGG - chr4_3:56981289-56981308 Msa0650190:CDS 25.0%
! TATCTGAATATGTTTATGCT+TGG - chr4_3:56981631-56981650 Msa0650190:CDS 25.0%
! ATCTGAATATGTTTATGCTT+GGG - chr4_3:56981632-56981651 Msa0650190:CDS 25.0%
!!! TGTGTTTTTATCTTTTGTTC+TGG - chr4_3:56981851-56981870 Msa0650190:intron 25.0%
! CAAAGATAAAATGTTCAGAT+TGG + chr4_3:56982597-56982616 None:intergenic 25.0%
!! ATCTTTGATCTTATCTCTTT+TGG - chr4_3:56982610-56982629 Msa0650190:CDS 25.0%
!!! ACTCTTAAATGTGGTTTTTT+AGG + chr4_3:56982656-56982675 None:intergenic 25.0%
! CATAAACAAATCACTTTCAT+CGG + chr4_3:56980640-56980659 None:intergenic 25.0%
! ATTGAATTGTCGATATTATG+TGG - chr4_3:56981086-56981105 Msa0650190:CDS 25.0%
! TTGAATTGTCGATATTATGT+GGG - chr4_3:56981087-56981106 Msa0650190:CDS 25.0%
! ATATATATGCTATTCTTGAC+TGG - chr4_3:56981130-56981149 Msa0650190:CDS 25.0%
! GGTTAATTTCTCAGTAAATT+TGG - chr4_3:56981188-56981207 Msa0650190:intron 25.0%
! AACAAATCAAAATACTCAGA+TGG + chr4_3:56981237-56981256 None:intergenic 25.0%
! TACTTATTATGTGTTTATCC+TGG - chr4_3:56981289-56981308 Msa0650190:CDS 25.0%
! TATCTGAATATGTTTATGCT+TGG - chr4_3:56981631-56981650 Msa0650190:CDS 25.0%
! ATCTGAATATGTTTATGCTT+GGG - chr4_3:56981632-56981651 Msa0650190:CDS 25.0%
!!! TGTGTTTTTATCTTTTGTTC+TGG - chr4_3:56981851-56981870 Msa0650190:intron 25.0%
! CAAAGATAAAATGTTCAGAT+TGG + chr4_3:56982597-56982616 None:intergenic 25.0%
!! ATCTTTGATCTTATCTCTTT+TGG - chr4_3:56982610-56982629 Msa0650190:CDS 25.0%
!!! ACTCTTAAATGTGGTTTTTT+AGG + chr4_3:56982656-56982675 None:intergenic 25.0%
! CATGTTAATTTTTGCGTTAG+AGG - chr4_3:56980984-56981003 Msa0650190:CDS 30.0%
ATATCGACAATTCAATCTGA+AGG + chr4_3:56981082-56981101 None:intergenic 30.0%
!!! TATTCTTGACTGGTTTTGTA+AGG - chr4_3:56981140-56981159 Msa0650190:intron 30.0%
TTATTATGTGTTTATCCTGG+TGG - chr4_3:56981292-56981311 Msa0650190:CDS 30.0%
TTCTCAATTTGAGAATTAGC+AGG + chr4_3:56981393-56981412 None:intergenic 30.0%
TCTAATCTAGATACGACATA+AGG + chr4_3:56981560-56981579 None:intergenic 30.0%
TGACAGCATTCCATATATTT+GGG + chr4_3:56981731-56981750 None:intergenic 30.0%
ATGACAGCATTCCATATATT+TGG + chr4_3:56981732-56981751 None:intergenic 30.0%
CACAAAAAAAGTGGATACAA+AGG + chr4_3:56981835-56981854 None:intergenic 30.0%
! TTCTGGATTTTCATGCAAAT+TGG - chr4_3:56981868-56981887 Msa0650190:intron 30.0%
! TCTGGATTTTCATGCAAATT+GGG - chr4_3:56981869-56981888 Msa0650190:intron 30.0%
ATTTGTCTTTCTCAACTGTT+GGG + chr4_3:56982097-56982116 None:intergenic 30.0%
! ATGGATTATAAGAATGTCGT+GGG - chr4_3:56982146-56982165 Msa0650190:intron 30.0%
AGCATTAAAAACGACAAGAA+AGG + chr4_3:56982264-56982283 None:intergenic 30.0%
TAGGATAAAGAGCAAATAGA+GGG + chr4_3:56982637-56982656 None:intergenic 30.0%
TTAGGATAAAGAGCAAATAG+AGG + chr4_3:56982638-56982657 None:intergenic 30.0%
! CATGTTAATTTTTGCGTTAG+AGG - chr4_3:56980984-56981003 Msa0650190:CDS 30.0%
ATATCGACAATTCAATCTGA+AGG + chr4_3:56981082-56981101 None:intergenic 30.0%
!!! TATTCTTGACTGGTTTTGTA+AGG - chr4_3:56981140-56981159 Msa0650190:intron 30.0%
TTATTATGTGTTTATCCTGG+TGG - chr4_3:56981292-56981311 Msa0650190:CDS 30.0%
TTCTCAATTTGAGAATTAGC+AGG + chr4_3:56981393-56981412 None:intergenic 30.0%
TCTAATCTAGATACGACATA+AGG + chr4_3:56981560-56981579 None:intergenic 30.0%
TGACAGCATTCCATATATTT+GGG + chr4_3:56981731-56981750 None:intergenic 30.0%
ATGACAGCATTCCATATATT+TGG + chr4_3:56981732-56981751 None:intergenic 30.0%
CACAAAAAAAGTGGATACAA+AGG + chr4_3:56981835-56981854 None:intergenic 30.0%
! TTCTGGATTTTCATGCAAAT+TGG - chr4_3:56981868-56981887 Msa0650190:intron 30.0%
! TCTGGATTTTCATGCAAATT+GGG - chr4_3:56981869-56981888 Msa0650190:intron 30.0%
ATTTGTCTTTCTCAACTGTT+GGG + chr4_3:56982097-56982116 None:intergenic 30.0%
! ATGGATTATAAGAATGTCGT+GGG - chr4_3:56982146-56982165 Msa0650190:intron 30.0%
AGCATTAAAAACGACAAGAA+AGG + chr4_3:56982264-56982283 None:intergenic 30.0%
TAGGATAAAGAGCAAATAGA+GGG + chr4_3:56982637-56982656 None:intergenic 30.0%
TTAGGATAAAGAGCAAATAG+AGG + chr4_3:56982638-56982657 None:intergenic 30.0%
CTAGCAACTGATTGGATAAT+GGG - chr4_3:56980399-56980418 Msa0650190:three_prime_UTR 35.0%
!! AGTGATTTGTTTATGTCGAG+TGG - chr4_3:56980645-56980664 Msa0650190:three_prime_UTR 35.0%
TCTGTTTATCGTGTTTGTGT+CGG - chr4_3:56981051-56981070 Msa0650190:CDS 35.0%
TTGAGTTTGTCTTAGTCCAT+TGG - chr4_3:56981163-56981182 Msa0650190:intron 35.0%
CTGAGAAATTAACCATCCAA+TGG + chr4_3:56981182-56981201 None:intergenic 35.0%
!! TTTATCCTGGTGGATTATCT+TGG - chr4_3:56981302-56981321 Msa0650190:CDS 35.0%
TTTGAGAATTAGCAGGTGAA+AGG + chr4_3:56981386-56981405 None:intergenic 35.0%
CAAATTGAGAACTCATCTCA+TGG - chr4_3:56981402-56981421 Msa0650190:intron 35.0%
! TGAGGCTATTTCAAATCCTT+CGG - chr4_3:56981470-56981489 Msa0650190:intron 35.0%
! AAGCAACTGAAAAGCATGAA+TGG + chr4_3:56981508-56981527 None:intergenic 35.0%
CGACATAAGGTATATTACCT+GGG + chr4_3:56981547-56981566 None:intergenic 35.0%
ACGACATAAGGTATATTACC+TGG + chr4_3:56981548-56981567 None:intergenic 35.0%
TATATTTGGGTCACAAGCAA+TGG + chr4_3:56981718-56981737 None:intergenic 35.0%
TTGCTTGTGACCCAAATATA+TGG - chr4_3:56981718-56981737 Msa0650190:intron 35.0%
! ATAAGAGACTGGTTGGATAA+TGG + chr4_3:56981803-56981822 None:intergenic 35.0%
AAAAGTGGATACAAAGGACA+TGG + chr4_3:56981829-56981848 None:intergenic 35.0%
TGTAGAAACTCCTGAAAAAG+AGG - chr4_3:56981956-56981975 Msa0650190:intron 35.0%
GATTTGTCTTTCTCAACTGT+TGG + chr4_3:56982098-56982117 None:intergenic 35.0%
! CATGGATTATAAGAATGTCG+TGG - chr4_3:56982145-56982164 Msa0650190:intron 35.0%
ATTGGCAGTTATGGTGATAA+TGG - chr4_3:56982184-56982203 Msa0650190:intron 35.0%
!!! TCACTTTTTTCTTGAACGCA+TGG - chr4_3:56982500-56982519 Msa0650190:intron 35.0%
ATACTTTACCCGTTGATGTA+AGG - chr4_3:56982551-56982570 Msa0650190:CDS 35.0%
TACTTTACCCGTTGATGTAA+GGG - chr4_3:56982552-56982571 Msa0650190:CDS 35.0%
CTAGCAACTGATTGGATAAT+GGG - chr4_3:56980399-56980418 Msa0650190:three_prime_UTR 35.0%
!! AGTGATTTGTTTATGTCGAG+TGG - chr4_3:56980645-56980664 Msa0650190:three_prime_UTR 35.0%
TCTGTTTATCGTGTTTGTGT+CGG - chr4_3:56981051-56981070 Msa0650190:CDS 35.0%
TTGAGTTTGTCTTAGTCCAT+TGG - chr4_3:56981163-56981182 Msa0650190:intron 35.0%
CTGAGAAATTAACCATCCAA+TGG + chr4_3:56981182-56981201 None:intergenic 35.0%
!! TTTATCCTGGTGGATTATCT+TGG - chr4_3:56981302-56981321 Msa0650190:CDS 35.0%
TTTGAGAATTAGCAGGTGAA+AGG + chr4_3:56981386-56981405 None:intergenic 35.0%
CAAATTGAGAACTCATCTCA+TGG - chr4_3:56981402-56981421 Msa0650190:intron 35.0%
! TGAGGCTATTTCAAATCCTT+CGG - chr4_3:56981470-56981489 Msa0650190:intron 35.0%
! AAGCAACTGAAAAGCATGAA+TGG + chr4_3:56981508-56981527 None:intergenic 35.0%
CGACATAAGGTATATTACCT+GGG + chr4_3:56981547-56981566 None:intergenic 35.0%
ACGACATAAGGTATATTACC+TGG + chr4_3:56981548-56981567 None:intergenic 35.0%
TATATTTGGGTCACAAGCAA+TGG + chr4_3:56981718-56981737 None:intergenic 35.0%
TTGCTTGTGACCCAAATATA+TGG - chr4_3:56981718-56981737 Msa0650190:intron 35.0%
! ATAAGAGACTGGTTGGATAA+TGG + chr4_3:56981803-56981822 None:intergenic 35.0%
AAAAGTGGATACAAAGGACA+TGG + chr4_3:56981829-56981848 None:intergenic 35.0%
TGTAGAAACTCCTGAAAAAG+AGG - chr4_3:56981956-56981975 Msa0650190:intron 35.0%
GATTTGTCTTTCTCAACTGT+TGG + chr4_3:56982098-56982117 None:intergenic 35.0%
! CATGGATTATAAGAATGTCG+TGG - chr4_3:56982145-56982164 Msa0650190:intron 35.0%
ATTGGCAGTTATGGTGATAA+TGG - chr4_3:56982184-56982203 Msa0650190:intron 35.0%
!!! TCACTTTTTTCTTGAACGCA+TGG - chr4_3:56982500-56982519 Msa0650190:intron 35.0%
ATACTTTACCCGTTGATGTA+AGG - chr4_3:56982551-56982570 Msa0650190:CDS 35.0%
TACTTTACCCGTTGATGTAA+GGG - chr4_3:56982552-56982571 Msa0650190:CDS 35.0%
GCTAGCAACTGATTGGATAA+TGG - chr4_3:56980398-56980417 Msa0650190:three_prime_UTR 40.0%
TTTCGGAGGATTTGAATGAC+TGG - chr4_3:56980607-56980626 Msa0650190:three_prime_UTR 40.0%
TTCGGAGGATTTGAATGACT+GGG - chr4_3:56980608-56980627 Msa0650190:three_prime_UTR 40.0%
GTTTGTCTTAGTCCATTGGA+TGG - chr4_3:56981167-56981186 Msa0650190:intron 40.0%
! ATCTCATGGTAGTGAAGTCT+TGG - chr4_3:56981416-56981435 Msa0650190:intron 40.0%
AAAGCATGAATGGCATGCTT+AGG + chr4_3:56981498-56981517 None:intergenic 40.0%
ATGGAAGATAAGAGACTGGT+TGG + chr4_3:56981810-56981829 None:intergenic 40.0%
! TCATGCAAATTGGGTTGCAA+TGG - chr4_3:56981878-56981897 Msa0650190:intron 40.0%
GCAACTGCAGATTCAACAAA+TGG - chr4_3:56981909-56981928 Msa0650190:intron 40.0%
! TCAGGCTTTTCCTCTTTTTC+AGG + chr4_3:56981969-56981988 None:intergenic 40.0%
GAAGCTGACAGTTACTGAAA+TGG - chr4_3:56982037-56982056 Msa0650190:intron 40.0%
AAATCTTCAGCTGATGCTGA+TGG - chr4_3:56982113-56982132 Msa0650190:intron 40.0%
GATTATAAGAATGTCGTGGG+AGG - chr4_3:56982149-56982168 Msa0650190:intron 40.0%
! TTTCATGGGATTGGCAGTTA+TGG - chr4_3:56982175-56982194 Msa0650190:intron 40.0%
! GTTTTGCCTAGTGAGTGTTT+AGG + chr4_3:56982228-56982247 None:intergenic 40.0%
AAAACGACAAGAAAGGTCGA+CGG + chr4_3:56982257-56982276 None:intergenic 40.0%
! TTTTCTTGAACGCATGGCTT+TGG - chr4_3:56982506-56982525 Msa0650190:intron 40.0%
TTTCTTGAACGCATGGCTTT+GGG - chr4_3:56982507-56982526 Msa0650190:intron 40.0%
GCTAGCAACTGATTGGATAA+TGG - chr4_3:56980398-56980417 Msa0650190:three_prime_UTR 40.0%
TTTCGGAGGATTTGAATGAC+TGG - chr4_3:56980607-56980626 Msa0650190:three_prime_UTR 40.0%
TTCGGAGGATTTGAATGACT+GGG - chr4_3:56980608-56980627 Msa0650190:three_prime_UTR 40.0%
GTTTGTCTTAGTCCATTGGA+TGG - chr4_3:56981167-56981186 Msa0650190:intron 40.0%
! ATCTCATGGTAGTGAAGTCT+TGG - chr4_3:56981416-56981435 Msa0650190:intron 40.0%
AAAGCATGAATGGCATGCTT+AGG + chr4_3:56981498-56981517 None:intergenic 40.0%
ATGGAAGATAAGAGACTGGT+TGG + chr4_3:56981810-56981829 None:intergenic 40.0%
! TCATGCAAATTGGGTTGCAA+TGG - chr4_3:56981878-56981897 Msa0650190:intron 40.0%
GCAACTGCAGATTCAACAAA+TGG - chr4_3:56981909-56981928 Msa0650190:intron 40.0%
! TCAGGCTTTTCCTCTTTTTC+AGG + chr4_3:56981969-56981988 None:intergenic 40.0%
GAAGCTGACAGTTACTGAAA+TGG - chr4_3:56982037-56982056 Msa0650190:intron 40.0%
AAATCTTCAGCTGATGCTGA+TGG - chr4_3:56982113-56982132 Msa0650190:intron 40.0%
GATTATAAGAATGTCGTGGG+AGG - chr4_3:56982149-56982168 Msa0650190:intron 40.0%
! TTTCATGGGATTGGCAGTTA+TGG - chr4_3:56982175-56982194 Msa0650190:intron 40.0%
! GTTTTGCCTAGTGAGTGTTT+AGG + chr4_3:56982228-56982247 None:intergenic 40.0%
AAAACGACAAGAAAGGTCGA+CGG + chr4_3:56982257-56982276 None:intergenic 40.0%
! TTTTCTTGAACGCATGGCTT+TGG - chr4_3:56982506-56982525 Msa0650190:intron 40.0%
TTTCTTGAACGCATGGCTTT+GGG - chr4_3:56982507-56982526 Msa0650190:intron 40.0%
!! GCAACTGATTGGATAATGGG+CGG - chr4_3:56980402-56980421 Msa0650190:three_prime_UTR 45.0%
ACCTCTCCAAACACCATTCT+CGG + chr4_3:56980681-56980700 None:intergenic 45.0%
TATGTGGGTTCAGAGTCTGT+TGG - chr4_3:56981102-56981121 Msa0650190:CDS 45.0%
CAGATCCAAGATAATCCACC+AGG + chr4_3:56981310-56981329 None:intergenic 45.0%
ACAAGACAATCCTTGGGAGA+AGG + chr4_3:56981450-56981469 None:intergenic 45.0%
! TCCCAAGGATTGTCTTGTTG+AGG - chr4_3:56981452-56981471 Msa0650190:intron 45.0%
GCCTCAACAAGACAATCCTT+GGG + chr4_3:56981456-56981475 None:intergenic 45.0%
AGCCTCAACAAGACAATCCT+TGG + chr4_3:56981457-56981476 None:intergenic 45.0%
! GTTGCTTAGCTCAAGTGTTG+AGG - chr4_3:56981521-56981540 Msa0650190:intron 45.0%
!! CAATGGATTGCACAACAGTC+TGG + chr4_3:56981701-56981720 None:intergenic 45.0%
TCGAAGAAACTAGTCACTGC+AGG + chr4_3:56981762-56981781 None:intergenic 45.0%
TTCTTCGAATCACAGCTTGC+AGG - chr4_3:56981774-56981793 Msa0650190:intron 45.0%
GGACATGGAAGATAAGAGAC+TGG + chr4_3:56981814-56981833 None:intergenic 45.0%
!!! ACAAATGGTGCTGCTTTTGC+TGG - chr4_3:56981924-56981943 Msa0650190:intron 45.0%
ACATTTCCTGACTGAGACTC+AGG + chr4_3:56981987-56982006 None:intergenic 45.0%
AGAGAGCCTAAACACTCACT+AGG - chr4_3:56982219-56982238 Msa0650190:intron 45.0%
GAAATGGAGTCTTCATGCAC+AGG - chr4_3:56982399-56982418 Msa0650190:CDS 45.0%
ACATTGGCCCTTACATCAAC+GGG + chr4_3:56982562-56982581 None:intergenic 45.0%
CACATTGGCCCTTACATCAA+CGG + chr4_3:56982563-56982582 None:intergenic 45.0%
TTGGTCCATGACGAACACAT+TGG + chr4_3:56982578-56982597 None:intergenic 45.0%
!! GCAACTGATTGGATAATGGG+CGG - chr4_3:56980402-56980421 Msa0650190:three_prime_UTR 45.0%
ACCTCTCCAAACACCATTCT+CGG + chr4_3:56980681-56980700 None:intergenic 45.0%
TATGTGGGTTCAGAGTCTGT+TGG - chr4_3:56981102-56981121 Msa0650190:CDS 45.0%
CAGATCCAAGATAATCCACC+AGG + chr4_3:56981310-56981329 None:intergenic 45.0%
ACAAGACAATCCTTGGGAGA+AGG + chr4_3:56981450-56981469 None:intergenic 45.0%
! TCCCAAGGATTGTCTTGTTG+AGG - chr4_3:56981452-56981471 Msa0650190:intron 45.0%
GCCTCAACAAGACAATCCTT+GGG + chr4_3:56981456-56981475 None:intergenic 45.0%
AGCCTCAACAAGACAATCCT+TGG + chr4_3:56981457-56981476 None:intergenic 45.0%
! GTTGCTTAGCTCAAGTGTTG+AGG - chr4_3:56981521-56981540 Msa0650190:intron 45.0%
!! CAATGGATTGCACAACAGTC+TGG + chr4_3:56981701-56981720 None:intergenic 45.0%
TCGAAGAAACTAGTCACTGC+AGG + chr4_3:56981762-56981781 None:intergenic 45.0%
TTCTTCGAATCACAGCTTGC+AGG - chr4_3:56981774-56981793 Msa0650190:intron 45.0%
GGACATGGAAGATAAGAGAC+TGG + chr4_3:56981814-56981833 None:intergenic 45.0%
!!! ACAAATGGTGCTGCTTTTGC+TGG - chr4_3:56981924-56981943 Msa0650190:intron 45.0%
ACATTTCCTGACTGAGACTC+AGG + chr4_3:56981987-56982006 None:intergenic 45.0%
AGAGAGCCTAAACACTCACT+AGG - chr4_3:56982219-56982238 Msa0650190:intron 45.0%
GAAATGGAGTCTTCATGCAC+AGG - chr4_3:56982399-56982418 Msa0650190:CDS 45.0%
ACATTGGCCCTTACATCAAC+GGG + chr4_3:56982562-56982581 None:intergenic 45.0%
CACATTGGCCCTTACATCAA+CGG + chr4_3:56982563-56982582 None:intergenic 45.0%
TTGGTCCATGACGAACACAT+TGG + chr4_3:56982578-56982597 None:intergenic 45.0%
!! ACTGATTGGATAATGGGCGG+TGG - chr4_3:56980405-56980424 Msa0650190:three_prime_UTR 50.0%
AACCACGGTTACGTATCCAG+CGG - chr4_3:56980491-56980510 Msa0650190:three_prime_UTR 50.0%
CCCTGAGATAAAACCCTCGT+CGG + chr4_3:56980549-56980568 None:intergenic 50.0%
!! CCGACGAGGGTTTTATCTCA+GGG - chr4_3:56980546-56980565 Msa0650190:three_prime_UTR 50.0%
!! CGACGAGGGTTTTATCTCAG+GGG - chr4_3:56980547-56980566 Msa0650190:three_prime_UTR 50.0%
TGGGTTCAGAGTCTGTTGGA+CGG - chr4_3:56981106-56981125 Msa0650190:CDS 50.0%
GAAAAGCCTGAGTCTCAGTC+AGG - chr4_3:56981978-56981997 Msa0650190:intron 50.0%
TCTTCAGCTGATGCTGATGG+AGG - chr4_3:56982116-56982135 Msa0650190:intron 50.0%
TGCTGATGGAGGCAGTTTCA+TGG - chr4_3:56982127-56982146 Msa0650190:intron 50.0%
TGTCGTGGGAGGAAGTTTCA+TGG - chr4_3:56982160-56982179 Msa0650190:intron 50.0%
GTCGTGGGAGGAAGTTTCAT+GGG - chr4_3:56982161-56982180 Msa0650190:intron 50.0%
GGGAGGAAGTTTCATGGGAT+TGG - chr4_3:56982166-56982185 Msa0650190:intron 50.0%
TGGAGTCTTCATGCACAGGT+CGG - chr4_3:56982403-56982422 Msa0650190:CDS 50.0%
!! GGCTTTGGGAAAGTGTGGAT+TGG - chr4_3:56982521-56982540 Msa0650190:CDS 50.0%
AAGGGCCAATGTGTTCGTCA+TGG - chr4_3:56982570-56982589 Msa0650190:CDS 50.0%
!! ACTGATTGGATAATGGGCGG+TGG - chr4_3:56980405-56980424 Msa0650190:three_prime_UTR 50.0%
AACCACGGTTACGTATCCAG+CGG - chr4_3:56980491-56980510 Msa0650190:three_prime_UTR 50.0%
CCCTGAGATAAAACCCTCGT+CGG + chr4_3:56980549-56980568 None:intergenic 50.0%
!! CCGACGAGGGTTTTATCTCA+GGG - chr4_3:56980546-56980565 Msa0650190:three_prime_UTR 50.0%
!! CGACGAGGGTTTTATCTCAG+GGG - chr4_3:56980547-56980566 Msa0650190:three_prime_UTR 50.0%
TGGGTTCAGAGTCTGTTGGA+CGG - chr4_3:56981106-56981125 Msa0650190:CDS 50.0%
GAAAAGCCTGAGTCTCAGTC+AGG - chr4_3:56981978-56981997 Msa0650190:intron 50.0%
TCTTCAGCTGATGCTGATGG+AGG - chr4_3:56982116-56982135 Msa0650190:intron 50.0%
TGCTGATGGAGGCAGTTTCA+TGG - chr4_3:56982127-56982146 Msa0650190:intron 50.0%
TGTCGTGGGAGGAAGTTTCA+TGG - chr4_3:56982160-56982179 Msa0650190:intron 50.0%
GTCGTGGGAGGAAGTTTCAT+GGG - chr4_3:56982161-56982180 Msa0650190:intron 50.0%
GGGAGGAAGTTTCATGGGAT+TGG - chr4_3:56982166-56982185 Msa0650190:intron 50.0%
TGGAGTCTTCATGCACAGGT+CGG - chr4_3:56982403-56982422 Msa0650190:CDS 50.0%
!! GGCTTTGGGAAAGTGTGGAT+TGG - chr4_3:56982521-56982540 Msa0650190:CDS 50.0%
AAGGGCCAATGTGTTCGTCA+TGG - chr4_3:56982570-56982589 Msa0650190:CDS 50.0%
!! GATTGGATAATGGGCGGTGG+CGG - chr4_3:56980408-56980427 Msa0650190:three_prime_UTR 55.0%
CGTATCCAGCGGAGAAACAG+TGG - chr4_3:56980502-56980521 Msa0650190:three_prime_UTR 55.0%
CAGCGGAGAAACAGTGGTCT+CGG - chr4_3:56980508-56980527 Msa0650190:three_prime_UTR 55.0%
TAAAACCCTCGTCGGCGATG+AGG + chr4_3:56980541-56980560 None:intergenic 55.0%
!! GCCGACGAGGGTTTTATCTC+AGG - chr4_3:56980545-56980564 Msa0650190:three_prime_UTR 55.0%
ATCTCAGGGGACCAAAACCG+CGG - chr4_3:56980560-56980579 Msa0650190:three_prime_UTR 55.0%
CCAAACACCATTCTCGGCGT+AGG + chr4_3:56980675-56980694 None:intergenic 55.0%
CCTACGCCGAGAATGGTGTT+TGG - chr4_3:56980672-56980691 Msa0650190:three_prime_UTR 55.0%
GCCGAGAATGGTGTTTGGAG+AGG - chr4_3:56980677-56980696 Msa0650190:three_prime_UTR 55.0%
TGGAGAGGTTCCGACGTTGA+AGG - chr4_3:56980692-56980711 Msa0650190:three_prime_UTR 55.0%
GGTTCCGACGTTGAAGGAAG+CGG - chr4_3:56980698-56980717 Msa0650190:three_prime_UTR 55.0%
TCCTCCGCTTCCTTCAACGT+CGG + chr4_3:56980705-56980724 None:intergenic 55.0%
GGGTTCAGAGTCTGTTGGAC+GGG - chr4_3:56981107-56981126 Msa0650190:CDS 55.0%
GGTTCTGTCTCCTTCTCCCA+AGG - chr4_3:56981437-56981456 Msa0650190:intron 55.0%
!! ATGGCATGCTTAGGCACCGA+AGG + chr4_3:56981489-56981508 None:intergenic 55.0%
!! TAGCTCAAGTGTTGAGGCCC+AGG - chr4_3:56981527-56981546 Msa0650190:CDS 55.0%
!!! GGTGCTGCTTTTGCTGGTTC+TGG - chr4_3:56981930-56981949 Msa0650190:intron 55.0%
!! CGCATGGCTTTGGGAAAGTG+TGG - chr4_3:56982516-56982535 Msa0650190:intron 55.0%
!! GATTGGATAATGGGCGGTGG+CGG - chr4_3:56980408-56980427 Msa0650190:three_prime_UTR 55.0%
CGTATCCAGCGGAGAAACAG+TGG - chr4_3:56980502-56980521 Msa0650190:three_prime_UTR 55.0%
CAGCGGAGAAACAGTGGTCT+CGG - chr4_3:56980508-56980527 Msa0650190:three_prime_UTR 55.0%
TAAAACCCTCGTCGGCGATG+AGG + chr4_3:56980541-56980560 None:intergenic 55.0%
!! GCCGACGAGGGTTTTATCTC+AGG - chr4_3:56980545-56980564 Msa0650190:three_prime_UTR 55.0%
ATCTCAGGGGACCAAAACCG+CGG - chr4_3:56980560-56980579 Msa0650190:three_prime_UTR 55.0%
CCAAACACCATTCTCGGCGT+AGG + chr4_3:56980675-56980694 None:intergenic 55.0%
CCTACGCCGAGAATGGTGTT+TGG - chr4_3:56980672-56980691 Msa0650190:three_prime_UTR 55.0%
GCCGAGAATGGTGTTTGGAG+AGG - chr4_3:56980677-56980696 Msa0650190:three_prime_UTR 55.0%
TGGAGAGGTTCCGACGTTGA+AGG - chr4_3:56980692-56980711 Msa0650190:three_prime_UTR 55.0%
GGTTCCGACGTTGAAGGAAG+CGG - chr4_3:56980698-56980717 Msa0650190:three_prime_UTR 55.0%
TCCTCCGCTTCCTTCAACGT+CGG + chr4_3:56980705-56980724 None:intergenic 55.0%
GGGTTCAGAGTCTGTTGGAC+GGG - chr4_3:56981107-56981126 Msa0650190:CDS 55.0%
GGTTCTGTCTCCTTCTCCCA+AGG - chr4_3:56981437-56981456 Msa0650190:intron 55.0%
!! ATGGCATGCTTAGGCACCGA+AGG + chr4_3:56981489-56981508 None:intergenic 55.0%
!! TAGCTCAAGTGTTGAGGCCC+AGG - chr4_3:56981527-56981546 Msa0650190:CDS 55.0%
!!! GGTGCTGCTTTTGCTGGTTC+TGG - chr4_3:56981930-56981949 Msa0650190:intron 55.0%
!! CGCATGGCTTTGGGAAAGTG+TGG - chr4_3:56982516-56982535 Msa0650190:intron 55.0%
CGTCGCTAGGTCAGGCTTCA+GGG - chr4_3:56980467-56980486 Msa0650190:three_prime_UTR 60.0%
GTCGCTAGGTCAGGCTTCAG+GGG - chr4_3:56980468-56980487 Msa0650190:three_prime_UTR 60.0%
GTCAGGCTTCAGGGGAACCA+CGG - chr4_3:56980476-56980495 Msa0650190:three_prime_UTR 60.0%
CTCCGCTGGATACGTAACCG+TGG + chr4_3:56980496-56980515 None:intergenic 60.0%
! CGAGACCACTGTTTCTCCGC+TGG + chr4_3:56980510-56980529 None:intergenic 60.0%
! AGGCTTCACGTCCGCGGTTT+TGG + chr4_3:56980574-56980593 None:intergenic 60.0%
CGTGAAGCCTCTGCACACGT+CGG - chr4_3:56980584-56980603 Msa0650190:three_prime_UTR 60.0%
!! GCCTCTGCACACGTCGGTTT+CGG - chr4_3:56980590-56980609 Msa0650190:three_prime_UTR 60.0%
TCCGAAACCGACGTGTGCAG+AGG + chr4_3:56980594-56980613 None:intergenic 60.0%
!! TCTGCACACGTCGGTTTCGG+AGG - chr4_3:56980593-56980612 Msa0650190:three_prime_UTR 60.0%
TGGAGAGCCTACGCCGAGAA+TGG - chr4_3:56980665-56980684 Msa0650190:three_prime_UTR 60.0%
TCCGACGTTGAAGGAAGCGG+AGG - chr4_3:56980701-56980720 Msa0650190:three_prime_UTR 60.0%
GAAGGAAGCGGAGGAAGCCA+CGG - chr4_3:56980710-56980729 Msa0650190:three_prime_UTR 60.0%
CGCGTGCTTCAATTCAGCCG+TGG + chr4_3:56980730-56980749 None:intergenic 60.0%
CGTCGCTAGGTCAGGCTTCA+GGG - chr4_3:56980467-56980486 Msa0650190:three_prime_UTR 60.0%
GTCGCTAGGTCAGGCTTCAG+GGG - chr4_3:56980468-56980487 Msa0650190:three_prime_UTR 60.0%
GTCAGGCTTCAGGGGAACCA+CGG - chr4_3:56980476-56980495 Msa0650190:three_prime_UTR 60.0%
CTCCGCTGGATACGTAACCG+TGG + chr4_3:56980496-56980515 None:intergenic 60.0%
! CGAGACCACTGTTTCTCCGC+TGG + chr4_3:56980510-56980529 None:intergenic 60.0%
! AGGCTTCACGTCCGCGGTTT+TGG + chr4_3:56980574-56980593 None:intergenic 60.0%
CGTGAAGCCTCTGCACACGT+CGG - chr4_3:56980584-56980603 Msa0650190:three_prime_UTR 60.0%
!! GCCTCTGCACACGTCGGTTT+CGG - chr4_3:56980590-56980609 Msa0650190:three_prime_UTR 60.0%
TCCGAAACCGACGTGTGCAG+AGG + chr4_3:56980594-56980613 None:intergenic 60.0%
!! TCTGCACACGTCGGTTTCGG+AGG - chr4_3:56980593-56980612 Msa0650190:three_prime_UTR 60.0%
TGGAGAGCCTACGCCGAGAA+TGG - chr4_3:56980665-56980684 Msa0650190:three_prime_UTR 60.0%
TCCGACGTTGAAGGAAGCGG+AGG - chr4_3:56980701-56980720 Msa0650190:three_prime_UTR 60.0%
GAAGGAAGCGGAGGAAGCCA+CGG - chr4_3:56980710-56980729 Msa0650190:three_prime_UTR 60.0%
CGCGTGCTTCAATTCAGCCG+TGG + chr4_3:56980730-56980749 None:intergenic 60.0%
!! CGGTGGCGGAACGATGAGGA+CGG - chr4_3:56980422-56980441 Msa0650190:three_prime_UTR 65.0%
TGACCTAGCGACGCCGATGC+CGG + chr4_3:56980460-56980479 None:intergenic 65.0%
GCGTCGCTAGGTCAGGCTTC+AGG - chr4_3:56980466-56980485 Msa0650190:three_prime_UTR 65.0%
GTGCAGAGGCTTCACGTCCG+CGG + chr4_3:56980580-56980599 None:intergenic 65.0%
!! CGGTGGCGGAACGATGAGGA+CGG - chr4_3:56980422-56980441 Msa0650190:three_prime_UTR 65.0%
TGACCTAGCGACGCCGATGC+CGG + chr4_3:56980460-56980479 None:intergenic 65.0%
GCGTCGCTAGGTCAGGCTTC+AGG - chr4_3:56980466-56980485 Msa0650190:three_prime_UTR 65.0%
GTGCAGAGGCTTCACGTCCG+CGG + chr4_3:56980580-56980599 None:intergenic 65.0%
!! TGGGCGGTGGCGGAACGATG+AGG - chr4_3:56980418-56980437 Msa0650190:three_prime_UTR 70.0%
AGGACGGCAGCCAAGCTCGC+CGG - chr4_3:56980438-56980457 Msa0650190:three_prime_UTR 70.0%
GCAGCCAAGCTCGCCGGCAT+CGG - chr4_3:56980444-56980463 Msa0650190:three_prime_UTR 70.0%
!! GGCATCGGCGTCGCTAGGTC+AGG - chr4_3:56980459-56980478 Msa0650190:three_prime_UTR 70.0%
!! TGGGCGGTGGCGGAACGATG+AGG - chr4_3:56980418-56980437 Msa0650190:three_prime_UTR 70.0%
AGGACGGCAGCCAAGCTCGC+CGG - chr4_3:56980438-56980457 Msa0650190:three_prime_UTR 70.0%
GCAGCCAAGCTCGCCGGCAT+CGG - chr4_3:56980444-56980463 Msa0650190:three_prime_UTR 70.0%
!! GGCATCGGCGTCGCTAGGTC+AGG - chr4_3:56980459-56980478 Msa0650190:three_prime_UTR 70.0%
GACGCCGATGCCGGCGAGCT+TGG + chr4_3:56980451-56980470 None:intergenic 75.0%
!! TCGCCGGCATCGGCGTCGCT+AGG - chr4_3:56980454-56980473 Msa0650190:three_prime_UTR 75.0%
ACCGCGCCTCATCGCCGACG+AGG - chr4_3:56980532-56980551 Msa0650190:three_prime_UTR 75.0%
CCCTCGTCGGCGATGAGGCG+CGG + chr4_3:56980536-56980555 None:intergenic 75.0%
CCGCGCCTCATCGCCGACGA+GGG - chr4_3:56980533-56980552 Msa0650190:three_prime_UTR 75.0%
GACGCCGATGCCGGCGAGCT+TGG + chr4_3:56980451-56980470 None:intergenic 75.0%
!! TCGCCGGCATCGGCGTCGCT+AGG - chr4_3:56980454-56980473 Msa0650190:three_prime_UTR 75.0%
ACCGCGCCTCATCGCCGACG+AGG - chr4_3:56980532-56980551 Msa0650190:three_prime_UTR 75.0%
CCCTCGTCGGCGATGAGGCG+CGG + chr4_3:56980536-56980555 None:intergenic 75.0%
CCGCGCCTCATCGCCGACGA+GGG - chr4_3:56980533-56980552 Msa0650190:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56980394 56982677 56980394 ID=Msa0650190;Name=Msa0650190
chr4_3 mRNA 56980394 56982677 56980394 ID=Msa0650190-mRNA-1;Parent=Msa0650190;Name=Msa0650190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=23|0.75|0.6|1|0.5|0.6|5|448|301
chr4_3 exon 56980394 56981152 56980394 ID=Msa0650190-mRNA-1:exon:14941;Parent=Msa0650190-mRNA-1
chr4_3 exon 56981276 56981369 56981276 ID=Msa0650190-mRNA-1:exon:14940;Parent=Msa0650190-mRNA-1
chr4_3 exon 56981523 56981694 56981523 ID=Msa0650190-mRNA-1:exon:14939;Parent=Msa0650190-mRNA-1
chr4_3 exon 56982314 56982504 56982314 ID=Msa0650190-mRNA-1:exon:14938;Parent=Msa0650190-mRNA-1
chr4_3 exon 56982517 56982677 56982517 ID=Msa0650190-mRNA-1:exon:14937;Parent=Msa0650190-mRNA-1
chr4_3 five_prime_UTR 56982655 56982677 56982655 ID=Msa0650190-mRNA-1:five_prime_utr;Parent=Msa0650190-mRNA-1
chr4_3 CDS 56982517 56982654 56982517 ID=Msa0650190-mRNA-1:cds;Parent=Msa0650190-mRNA-1
chr4_3 CDS 56982314 56982504 56982314 ID=Msa0650190-mRNA-1:cds;Parent=Msa0650190-mRNA-1
chr4_3 CDS 56981523 56981694 56981523 ID=Msa0650190-mRNA-1:cds;Parent=Msa0650190-mRNA-1
chr4_3 CDS 56981276 56981369 56981276 ID=Msa0650190-mRNA-1:cds;Parent=Msa0650190-mRNA-1
chr4_3 CDS 56980842 56981152 56980842 ID=Msa0650190-mRNA-1:cds;Parent=Msa0650190-mRNA-1
chr4_3 three_prime_UTR 56980394 56980841 56980394 ID=Msa0650190-mRNA-1:three_prime_utr;Parent=Msa0650190-mRNA-1
Gene Sequence

>Msa0650190

ATGGGCGGTGGCGGAACGATGAGGACGGCAGCCAAGCTCGCCGGCATCGGCGTCGCTAGGTCAGGCTTCAGGGGAACCACGGTTACGTATCCAGCGGAGAAACAGTGGTCTCGGAACCGCGCCTCATCGCCGACGAGGGGGACCAAAACCGCGGACGTGAAGCCTCTGCACACGTCGGTTTCGGAGGATTTGAATGACTGGGAATTCGCCGATGAAAGTGATTTGTTTATGTCGAGTGGAGAGCCTACGCCGAGAATGGTGTTTGGAGAGGTTCCGACGTTGAAGGAAGCGGAGGAAGCCACGGCTGAATTGAAGCACGCGATTGATCAAATTTACCTTTCACCTGCTAATTCTCAAATTGAGAACTCATCTCATGGTAGTGAAGTCTTGGTTCTGTCTCCTTCTCCCAAGGATTGTCTTGTTGAGGCTATTTCAAATCCTTCGGTGCCTAAGCATGCCATTCATGCTTTTCAGTTGCTTAGCTCAAGTGTTGAGGCCCAGACTGTTGTGCAATCCATTGCTTGTGACCCAAATATATGGAATGCTGTCATGCAAAATCCTGCAGTGACTAGTTTCTTCGAATCACAGCTTGCAGATTCAACAAATGGTGCTGCTTTTGCTGGTTCTGGATTTGTAGAAACTCCTGAAAAAGAGGAAAAGCCTGAGTCTCAGTCAGGAAATGTTTTTGATTTTATGGGTATTCTGCAGAATTTGAAGCTGACAGTTACTGAAATGGTAAGTAGAATGTCCAATTTCTTTCAAAACATATTCCCAACAGTTGAGAAAGACAAATCTTCAGCTGATGCTGATGGAGGCAGTTTCATGGATTATAAGAATGTCGTGGGAGGAAGTTTCATGGGATTGGCAGTTATGGTGATAATGGTTGTACTGATGAAGAGAGCCTAA

Protein sequence

>Msa0650190

MGGGGTMRTAAKLAGIGVARSGFRGTTVTYPAEKQWSRNRASSPTRGTKTADVKPLHTSVSEDLNDWEFADESDLFMSSGEPTPRMVFGEVPTLKEAEEATAELKHAIDQIYLSPANSQIENSSHGSEVLVLSPSPKDCLVEAISNPSVPKHAIHAFQLLSSSVEAQTVVQSIACDPNIWNAVMQNPAVTSFFESQLADSTNGAAFAGSGFVETPEKEEKPESQSGNVFDFMGILQNLKLTVTEMVSRMSNFFQNIFPTVEKDKSSADADGGSFMDYKNVVGGSFMGLAVMVIMVVLMKRA*