Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734120 | XP_003615608.1 | 92.611 | 203 | 1 | 1 | 1 | 189 | 1 | 203 | 8.90e-132 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734120 | sp|Q9LUX9|FQRL3_ARATH | 65.842 | 202 | 55 | 1 | 1 | 188 | 1 | 202 | 5.51e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734120 | G7K6C8 | 92.611 | 203 | 1 | 1 | 1 | 189 | 1 | 203 | 4.25e-132 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050730 | Msa0734120 | 0.821667 | 3.574528e-53 | -8.615850e-47 |
| Msa0050760 | Msa0734120 | 0.804608 | 1.990947e-49 | -8.615850e-47 |
| Msa0627910 | Msa0734120 | 0.802710 | 4.930140e-49 | -8.615850e-47 |
| Msa0650190 | Msa0734120 | 0.831228 | 1.880371e-55 | -8.615850e-47 |
| Msa0692110 | Msa0734120 | 0.820600 | 6.294726e-53 | -8.615850e-47 |
| Msa0734120 | Msa0743260 | 0.804038 | 2.616523e-49 | -8.615850e-47 |
| Msa0734120 | Msa0775260 | 0.829417 | 5.209470e-55 | -8.615850e-47 |
| Msa0734120 | Msa0791910 | 0.814248 | 1.697253e-51 | -8.615850e-47 |
| Msa0734120 | Msa0792090 | 0.808021 | 3.800307e-50 | -8.615850e-47 |
| Msa0734120 | Msa0853100 | 0.804206 | 2.414319e-49 | -8.615850e-47 |
| Msa0734120 | Msa0853170 | 0.817250 | 3.634543e-52 | -8.615850e-47 |
| Msa0734120 | Msa0993530 | 0.808816 | 2.572028e-50 | -8.615850e-47 |
| Msa0734120 | Msa1015060 | 0.825171 | 5.421288e-54 | -8.615850e-47 |
| Msa0734120 | Msa1026760 | 0.809103 | 2.232642e-50 | -8.615850e-47 |
| Msa0734120 | Msa1026790 | 0.811454 | 6.944227e-51 | -8.615850e-47 |
| Msa0734120 | Msa1056640 | 0.834803 | 2.425927e-56 | -8.615850e-47 |
| Msa0734120 | Msa1087470 | 0.810214 | 1.288529e-50 | -8.615850e-47 |
| Msa0734120 | Msa1092820 | 0.851180 | 1.049657e-60 | -8.615850e-47 |
| Msa0734120 | Msa1109570 | 0.808045 | 3.755996e-50 | -8.615850e-47 |
| Msa0734120 | Msa1116690 | 0.806527 | 7.876836e-50 | -8.615850e-47 |
| Msa0734120 | Msa1219430 | 0.818151 | 2.276734e-52 | -8.615850e-47 |
| Msa0734120 | Msa1237030 | 0.804198 | 2.423517e-49 | -8.615850e-47 |
| Msa0734120 | Msa1267260 | 0.820740 | 5.845966e-53 | -8.615850e-47 |
| Msa0734120 | Msa1303160 | 0.820593 | 6.319482e-53 | -8.615850e-47 |
| Msa0734120 | Msa1315870 | 0.803095 | 4.104269e-49 | -8.615850e-47 |
| Msa0734120 | Msa1343360 | 0.833368 | 5.553019e-56 | -8.615850e-47 |
| Msa0734120 | Msa1408790 | 0.813770 | 2.162869e-51 | -8.615850e-47 |
| Msa0734120 | Msa1435750 | 0.851204 | 1.033456e-60 | -8.615850e-47 |
| Msa0734120 | Msa1436040 | 0.807836 | 4.161044e-50 | -8.615850e-47 |
| Msa0734120 | Msa1440600 | 0.807821 | 4.191893e-50 | -8.615850e-47 |
| Msa0143080 | Msa0734120 | 0.824395 | 8.259784e-54 | -8.615850e-47 |
| Msa0236980 | Msa0734120 | 0.827921 | 1.197920e-54 | -8.615850e-47 |
| Msa0392070 | Msa0734120 | 0.801308 | 9.572874e-49 | -8.615850e-47 |
| Msa0480320 | Msa0734120 | 0.801608 | 8.310391e-49 | -8.615850e-47 |
| Msa0328210 | Msa0734120 | 0.844520 | 7.184240e-59 | -8.615850e-47 |
| Msa0505060 | Msa0734120 | 0.817175 | 3.779199e-52 | -8.615850e-47 |
| Msa0519220 | Msa0734120 | 0.807321 | 5.352480e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734120 | MtrunA17_Chr5g0429671 | 92.611 | 203 | 1 | 1 | 1 | 189 | 1 | 203 | 8.19e-136 | 377 |
| Msa0734120 | MtrunA17_Chr2g0318961 | 63.819 | 199 | 57 | 2 | 4 | 188 | 3 | 200 | 9.44e-91 | 263 |
| Msa0734120 | MtrunA17_Chr8g0361451 | 64.141 | 198 | 56 | 2 | 5 | 188 | 4 | 200 | 3.99e-89 | 259 |
| Msa0734120 | MtrunA17_Chr2g0280641 | 61.809 | 199 | 61 | 2 | 4 | 188 | 3 | 200 | 2.15e-85 | 250 |
| Msa0734120 | MtrunA17_Chr4g0048841 | 63.776 | 196 | 56 | 2 | 7 | 188 | 41 | 235 | 1.28e-84 | 249 |
| Msa0734120 | MtrunA17_Chr4g0034601 | 57.868 | 197 | 69 | 1 | 5 | 187 | 52 | 248 | 6.32e-78 | 233 |
| Msa0734120 | MtrunA17_Chr5g0403681 | 54.315 | 197 | 76 | 1 | 5 | 187 | 53 | 249 | 4.92e-75 | 226 |
| Msa0734120 | MtrunA17_Chr8g0361461 | 59.829 | 117 | 33 | 1 | 86 | 188 | 1 | 117 | 1.01e-42 | 139 |
| Msa0734120 | MtrunA17_Chr4g0048831 | 61.538 | 117 | 27 | 2 | 86 | 188 | 1 | 113 | 1.96e-42 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734120 | AT5G58800.1 | 65.842 | 202 | 55 | 1 | 1 | 188 | 1 | 202 | 5.60e-97 | 280 |
| Msa0734120 | AT5G58800.2 | 65.842 | 202 | 55 | 1 | 1 | 188 | 1 | 202 | 5.60e-97 | 280 |
| Msa0734120 | AT5G54500.1 | 66.332 | 199 | 52 | 2 | 4 | 188 | 3 | 200 | 1.67e-92 | 268 |
| Msa0734120 | AT4G27270.1 | 65.829 | 199 | 53 | 2 | 4 | 188 | 3 | 200 | 1.09e-91 | 266 |
| Msa0734120 | AT4G27270.3 | 64.211 | 190 | 53 | 2 | 13 | 188 | 1 | 189 | 1.06e-84 | 248 |
| Msa0734120 | AT4G27270.2 | 64.211 | 190 | 53 | 2 | 13 | 188 | 1 | 189 | 1.06e-84 | 248 |
| Msa0734120 | AT4G36750.1 | 54.315 | 197 | 76 | 1 | 5 | 187 | 74 | 270 | 7.90e-76 | 229 |
| Msa0734120 | AT5G54500.2 | 53.000 | 200 | 71 | 4 | 4 | 189 | 3 | 193 | 7.15e-66 | 202 |
| Msa0734120 | AT4G27270.4 | 66.000 | 150 | 36 | 2 | 53 | 188 | 1 | 149 | 2.42e-64 | 195 |
Find 73 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTGATGCTTTGATATT+TGG | 0.205625 | 5_1:+47736830 | Msa0734120:CDS |
| ATTCGATCCGAAAGAATTTC+AGG | 0.264514 | 5_1:-47736740 | None:intergenic |
| AATTCTTTCGGATCGAATAT+TGG | 0.279333 | 5_1:+47736745 | Msa0734120:CDS |
| TTGTGTGTTGTACTGTTTCC+TGG | 0.290118 | 5_1:+47735671 | Msa0734120:five_prime_UTR |
| GCAAACCTGCTGGAATCTTC+TGG | 0.309872 | 5_1:+47736942 | Msa0734120:CDS |
| ATAAAACAAGTTTATTTGAT+TGG | 0.338910 | 5_1:+47735521 | None:intergenic |
| TATATATTTATATATTTGTA+TGG | 0.348774 | 5_1:-47735632 | None:intergenic |
| TTTGAGATGGATGAGGTAAA+AGG | 0.353976 | 5_1:+47737399 | Msa0734120:CDS |
| CTTGGATACACCTTTGGAAA+TGG | 0.363049 | 5_1:+47737372 | Msa0734120:CDS |
| AAGGCCTTCTTTGACGCTAC+TGG | 0.365059 | 5_1:+47736890 | Msa0734120:CDS |
| AATTCTAACACTTACCAAAC+TGG | 0.374478 | 5_1:+47735571 | Msa0734120:five_prime_UTR |
| GTTCCCCTTGGATACACCTT+TGG | 0.376842 | 5_1:+47737366 | Msa0734120:CDS |
| TCAGCTACATCATCTGGTTT+AGG | 0.377031 | 5_1:-47736785 | None:intergenic |
| TTCTGGAGTACTGGATTTAA+CGG | 0.377796 | 5_1:+47736959 | Msa0734120:CDS |
| TGCAGGTATTACTCATTGTA+TGG | 0.383898 | 5_1:+47736512 | Msa0734120:intron |
| AATGTATTTACCCTGGTAAA+AGG | 0.394202 | 5_1:-47737496 | None:intergenic |
| ACAGGTACCTGAAATTCTTT+CGG | 0.401906 | 5_1:+47736733 | Msa0734120:intron |
| TCAGCCTCCACAAGTTGTTC+CGG | 0.417062 | 5_1:-47736815 | None:intergenic |
| TCTGGAGTACTGGATTTAAC+GGG | 0.417125 | 5_1:+47736960 | Msa0734120:CDS |
| AGCAAAACATGCGTCCAGTT+TGG | 0.421147 | 5_1:-47735585 | None:intergenic |
| GGAGGCTCGGCGTATGGCGC+TGG | 0.423668 | 5_1:+47737420 | Msa0734120:CDS |
| GGCATGCTTTATGTTCCCCT+TGG | 0.425942 | 5_1:+47737354 | Msa0734120:CDS |
| TTAATGTCAGCTACATCATC+TGG | 0.433955 | 5_1:-47736791 | None:intergenic |
| AGTTTGGTAAGTGTTAGAAT+TGG | 0.439338 | 5_1:-47735569 | None:intergenic |
| AAGAAGGCCTTGAGCTGGCT+TGG | 0.441508 | 5_1:-47736878 | None:intergenic |
| TGAGGATTATTGATTAATGT+TGG | 0.449354 | 5_1:-47735701 | None:intergenic |
| GCTGGAATCTTCTGGAGTAC+TGG | 0.455679 | 5_1:+47736950 | Msa0734120:CDS |
| TGACGCTACTGGAGAGTTGT+GGG | 0.458101 | 5_1:+47736901 | Msa0734120:CDS |
| GCACTCGCAGGCAAACCTGC+TGG | 0.474276 | 5_1:+47736932 | Msa0734120:CDS |
| TTGACGCTACTGGAGAGTTG+TGG | 0.476817 | 5_1:+47736900 | Msa0734120:CDS |
| TCGAATATTGGAAAAGATGA+AGG | 0.496681 | 5_1:+47736757 | Msa0734120:CDS |
| GTAAAAGGAGGCTCGGCGTA+TGG | 0.515718 | 5_1:+47737414 | Msa0734120:CDS |
| AAGGTGTTGAAGCAACACTT+TGG | 0.525141 | 5_1:+47736585 | Msa0734120:CDS |
| GTATGGAGCTTTGTGTTGTG+TGG | 0.534510 | 5_1:-47735615 | None:intergenic |
| CGTCAAAGAAGGCCTTGAGC+TGG | 0.538429 | 5_1:-47736883 | None:intergenic |
| TACGGAGCTAGAGCTTCAGC+AGG | 0.542875 | 5_1:+47737473 | Msa0734120:CDS |
| TATGGCGCTGGAACTTTCGC+AGG | 0.546410 | 5_1:+47737432 | Msa0734120:CDS |
| GCTGGAACTTTCGCAGGAGA+TGG | 0.552540 | 5_1:+47737438 | Msa0734120:CDS |
| GTGTTGAAGCAACACTTTGG+AGG | 0.556934 | 5_1:+47736588 | Msa0734120:CDS |
| CATTAAGCCGGAACAACTTG+TGG | 0.557154 | 5_1:+47736808 | Msa0734120:CDS |
| TGGGCGTCTCAAGCACTCGC+AGG | 0.560559 | 5_1:+47736920 | Msa0734120:CDS |
| TGGAAATGGCATGTTTGAGA+TGG | 0.561187 | 5_1:+47737386 | Msa0734120:CDS |
| GTATGGACATGTGAACACTA+TGG | 0.567651 | 5_1:+47736529 | Msa0734120:CDS |
| CATTTCCAAAGGTGTATCCA+AGG | 0.572143 | 5_1:-47737371 | None:intergenic |
| CTCTCCAGTAGCGTCAAAGA+AGG | 0.574680 | 5_1:-47736894 | None:intergenic |
| GGATGAGGTAAAAGGAGGCT+CGG | 0.575373 | 5_1:+47737407 | Msa0734120:CDS |
| CTGGAGTACTGGATTTAACG+GGG | 0.577372 | 5_1:+47736961 | Msa0734120:CDS |
| AAACAAACCTTTGATGTCTG+AGG | 0.579244 | 5_1:-47735719 | None:intergenic |
| ATAACTCAGTTAGCTCATCA+TGG | 0.581730 | 5_1:+47737333 | Msa0734120:intron |
| TTTCAGCAATGTATTTACCC+TGG | 0.584614 | 5_1:-47737503 | None:intergenic |
| CTCAAACATGCCATTTCCAA+AGG | 0.589861 | 5_1:-47737382 | None:intergenic |
| TGCTGAAGCTCTAGCTCCGT+AGG | 0.589977 | 5_1:-47737471 | None:intergenic |
| GCTACATCATCTGGTTTAGG+AGG | 0.591266 | 5_1:-47736782 | None:intergenic |
| ATTAATGTTGGAAAATAACC+AGG | 0.591436 | 5_1:-47735689 | None:intergenic |
| TGTTGAAGCAACACTTTGGA+GGG | 0.594022 | 5_1:+47736589 | Msa0734120:CDS |
| TGATGTAGCTGACATTAAGC+CGG | 0.602082 | 5_1:+47736796 | Msa0734120:CDS |
| AGATGGAACTCGTCAACCTA+CGG | 0.602549 | 5_1:+47737455 | Msa0734120:CDS |
| GTACTCCAGAAGATTCCAGC+AGG | 0.603541 | 5_1:-47736947 | None:intergenic |
| TATGATGCCAAGCCAGCTCA+AGG | 0.606898 | 5_1:+47736871 | Msa0734120:CDS |
| CAATAATCCTCAGACATCAA+AGG | 0.607346 | 5_1:+47735712 | Msa0734120:five_prime_UTR |
| TGGCATGTTTGAGATGGATG+AGG | 0.609472 | 5_1:+47737392 | Msa0734120:CDS |
| ATTTCCAAAGGTGTATCCAA+GGG | 0.615282 | 5_1:-47737370 | None:intergenic |
| GGCATCATACCAAAACGTGA+AGG | 0.648138 | 5_1:-47736857 | None:intergenic |
| TTAGAAGATGACTATCACCA+AGG | 0.664695 | 5_1:+47736347 | Msa0734120:exon |
| TGGCAAGAGAAGTACACAAG+GGG | 0.666285 | 5_1:+47736549 | Msa0734120:CDS |
| TGCTTACACAATGTAGACCT+TGG | 0.673794 | 5_1:-47736364 | None:intergenic |
| TAAGCCGGAACAACTTGTGG+AGG | 0.677801 | 5_1:+47736811 | Msa0734120:CDS |
| GAGATGGATGAGGTAAAAGG+AGG | 0.679998 | 5_1:+47737402 | Msa0734120:CDS |
| TGGAGTACTGGATTTAACGG+GGG | 0.687704 | 5_1:+47736962 | Msa0734120:CDS |
| TATGGCAAGAGAAGTACACA+AGG | 0.698554 | 5_1:+47736547 | Msa0734120:CDS |
| TTTCCAAAGGTGTATCCAAG+GGG | 0.702026 | 5_1:-47737369 | None:intergenic |
| ATGGCAAGAGAAGTACACAA+GGG | 0.726547 | 5_1:+47736548 | Msa0734120:CDS |
| GGCAAGAGAAGTACACAAGG+GGG | 0.735429 | 5_1:+47736550 | Msa0734120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTACATAAATTAATTCTT+TGG | + | chr5_1:47735914-47735933 | Msa0734120:intron | 15.0% |
| !!! | TAGTATTGATCAAATTAAAA+TGG | + | chr5_1:47736433-47736452 | Msa0734120:intron | 15.0% |
| !! | CTATTGTAAAAGAAAATATT+TGG | + | chr5_1:47736651-47736670 | Msa0734120:intron | 15.0% |
| !! | TAGTTTAATCATAAAATGTT+TGG | + | chr5_1:47737138-47737157 | Msa0734120:intron | 15.0% |
| !!! | TTGGTTTATTTTTTATGTAT+CGG | + | chr5_1:47737157-47737176 | Msa0734120:intron | 15.0% |
| !! | AAGTACATAAATTAATTCTT+TGG | + | chr5_1:47735914-47735933 | Msa0734120:intron | 15.0% |
| !!! | TAGTATTGATCAAATTAAAA+TGG | + | chr5_1:47736433-47736452 | Msa0734120:intron | 15.0% |
| !! | CTATTGTAAAAGAAAATATT+TGG | + | chr5_1:47736651-47736670 | Msa0734120:intron | 15.0% |
| !! | TAGTTTAATCATAAAATGTT+TGG | + | chr5_1:47737138-47737157 | Msa0734120:intron | 15.0% |
| !!! | TTGGTTTATTTTTTATGTAT+CGG | + | chr5_1:47737157-47737176 | Msa0734120:intron | 15.0% |
| !!! | TTGTTCAAAGTAATGAATTT+TGG | - | chr5_1:47735828-47735847 | None:intergenic | 20.0% |
| !! | TACATAAATTAATTCTTTGG+AGG | + | chr5_1:47735917-47735936 | Msa0734120:intron | 20.0% |
| !! | ACTATTTATAAGATAGATAG+AGG | - | chr5_1:47737023-47737042 | None:intergenic | 20.0% |
| !!! | TTGTTCAAAGTAATGAATTT+TGG | - | chr5_1:47735828-47735847 | None:intergenic | 20.0% |
| !! | TACATAAATTAATTCTTTGG+AGG | + | chr5_1:47735917-47735936 | Msa0734120:intron | 20.0% |
| !! | ACTATTTATAAGATAGATAG+AGG | - | chr5_1:47737023-47737042 | None:intergenic | 20.0% |
| ! | ATTAATGTTGGAAAATAACC+AGG | - | chr5_1:47735692-47735711 | None:intergenic | 25.0% |
| !! | TGAGGATTATTGATTAATGT+TGG | - | chr5_1:47735704-47735723 | None:intergenic | 25.0% |
| ! | ATTGATCATATGTAGATGTT+AGG | - | chr5_1:47735777-47735796 | None:intergenic | 25.0% |
| ! | ACATCTACATATGATCAATT+CGG | + | chr5_1:47735778-47735797 | Msa0734120:intron | 25.0% |
| !! | TAAATTAATTCTTTGGAGGT+TGG | + | chr5_1:47735921-47735940 | Msa0734120:intron | 25.0% |
| ! | ATCATGCTAACAAATGTTTA+AGG | + | chr5_1:47736061-47736080 | Msa0734120:intron | 25.0% |
| ! | TCATGCTAACAAATGTTTAA+GGG | + | chr5_1:47736062-47736081 | Msa0734120:intron | 25.0% |
| !! | CTAAGACAATTTTCTTTTCT+GGG | - | chr5_1:47736102-47736121 | None:intergenic | 25.0% |
| !!! | TCTAAGACAATTTTCTTTTC+TGG | - | chr5_1:47736103-47736122 | None:intergenic | 25.0% |
| ! | AAGTAATGTAAGTCAACAAT+AGG | - | chr5_1:47736183-47736202 | None:intergenic | 25.0% |
| ! | AAGTAAAAAAAAGGGGAAAA+GGG | - | chr5_1:47736404-47736423 | None:intergenic | 25.0% |
| ! | ATTGTGCAAGTAAAAAAAAG+GGG | - | chr5_1:47736411-47736430 | None:intergenic | 25.0% |
| ! | CATTGTGCAAGTAAAAAAAA+GGG | - | chr5_1:47736412-47736431 | None:intergenic | 25.0% |
| ! | ACATTGTGCAAGTAAAAAAA+AGG | - | chr5_1:47736413-47736432 | None:intergenic | 25.0% |
| !! | ATTTGGATTCTTTTGTAGTT+AGG | + | chr5_1:47736668-47736687 | Msa0734120:intron | 25.0% |
| ! | ATTAATGTTGGAAAATAACC+AGG | - | chr5_1:47735692-47735711 | None:intergenic | 25.0% |
| !! | TGAGGATTATTGATTAATGT+TGG | - | chr5_1:47735704-47735723 | None:intergenic | 25.0% |
| ! | ATTGATCATATGTAGATGTT+AGG | - | chr5_1:47735777-47735796 | None:intergenic | 25.0% |
| ! | ACATCTACATATGATCAATT+CGG | + | chr5_1:47735778-47735797 | Msa0734120:intron | 25.0% |
| !! | TAAATTAATTCTTTGGAGGT+TGG | + | chr5_1:47735921-47735940 | Msa0734120:intron | 25.0% |
| ! | ATCATGCTAACAAATGTTTA+AGG | + | chr5_1:47736061-47736080 | Msa0734120:intron | 25.0% |
| ! | TCATGCTAACAAATGTTTAA+GGG | + | chr5_1:47736062-47736081 | Msa0734120:intron | 25.0% |
| !! | CTAAGACAATTTTCTTTTCT+GGG | - | chr5_1:47736102-47736121 | None:intergenic | 25.0% |
| !!! | TCTAAGACAATTTTCTTTTC+TGG | - | chr5_1:47736103-47736122 | None:intergenic | 25.0% |
| ! | AAGTAATGTAAGTCAACAAT+AGG | - | chr5_1:47736183-47736202 | None:intergenic | 25.0% |
| ! | AAGTAAAAAAAAGGGGAAAA+GGG | - | chr5_1:47736404-47736423 | None:intergenic | 25.0% |
| ! | ATTGTGCAAGTAAAAAAAAG+GGG | - | chr5_1:47736411-47736430 | None:intergenic | 25.0% |
| ! | CATTGTGCAAGTAAAAAAAA+GGG | - | chr5_1:47736412-47736431 | None:intergenic | 25.0% |
| ! | ACATTGTGCAAGTAAAAAAA+AGG | - | chr5_1:47736413-47736432 | None:intergenic | 25.0% |
| !! | ATTTGGATTCTTTTGTAGTT+AGG | + | chr5_1:47736668-47736687 | Msa0734120:intron | 25.0% |
| AGTTTGGTAAGTGTTAGAAT+TGG | - | chr5_1:47735572-47735591 | None:intergenic | 30.0% | |
| AATTCTAACACTTACCAAAC+TGG | + | chr5_1:47735571-47735590 | Msa0734120:five_prime_UTR | 30.0% | |
| GTTAGGAAAATCAATCATAC+AGG | - | chr5_1:47735760-47735779 | None:intergenic | 30.0% | |
| TCTTATGAACAGCTAAAGTA+TGG | - | chr5_1:47735874-47735893 | None:intergenic | 30.0% | |
| ATACTTTAGCTGTTCATAAG+AGG | + | chr5_1:47735873-47735892 | Msa0734120:intron | 30.0% | |
| AAAGTGAGTCATGATTCAAT+TGG | - | chr5_1:47736021-47736040 | None:intergenic | 30.0% | |
| CAAACAATAACAGTAGGTAA+AGG | - | chr5_1:47736281-47736300 | None:intergenic | 30.0% | |
| CAAGATCAAACAATAACAGT+AGG | - | chr5_1:47736287-47736306 | None:intergenic | 30.0% | |
| AGTAAAAAAAAGGGGAAAAG+GGG | - | chr5_1:47736403-47736422 | None:intergenic | 30.0% | |
| CAAGTAAAAAAAAGGGGAAA+AGG | - | chr5_1:47736405-47736424 | None:intergenic | 30.0% | |
| ! | TGTATCACATCAATTTTTGC+AGG | + | chr5_1:47736495-47736514 | Msa0734120:intron | 30.0% |
| GATTTCAGTTTGATGAAAAC+AGG | + | chr5_1:47736715-47736734 | Msa0734120:intron | 30.0% | |
| AATTCTTTCGGATCGAATAT+TGG | + | chr5_1:47736745-47736764 | Msa0734120:CDS | 30.0% | |
| TCGAATATTGGAAAAGATGA+AGG | + | chr5_1:47736757-47736776 | Msa0734120:CDS | 30.0% | |
| TAAGATAGATAGAGGTCAAA+GGG | - | chr5_1:47737015-47737034 | None:intergenic | 30.0% | |
| ATAAGATAGATAGAGGTCAA+AGG | - | chr5_1:47737016-47737035 | None:intergenic | 30.0% | |
| ! | AATTTCACACATCTGTTTTC+CGG | + | chr5_1:47737074-47737093 | Msa0734120:intron | 30.0% |
| CTGCTAATGTCAAAAACATA+AGG | - | chr5_1:47737195-47737214 | None:intergenic | 30.0% | |
| AATGTATTTACCCTGGTAAA+AGG | - | chr5_1:47737499-47737518 | None:intergenic | 30.0% | |
| AGTTTGGTAAGTGTTAGAAT+TGG | - | chr5_1:47735572-47735591 | None:intergenic | 30.0% | |
| AATTCTAACACTTACCAAAC+TGG | + | chr5_1:47735571-47735590 | Msa0734120:five_prime_UTR | 30.0% | |
| GTTAGGAAAATCAATCATAC+AGG | - | chr5_1:47735760-47735779 | None:intergenic | 30.0% | |
| TCTTATGAACAGCTAAAGTA+TGG | - | chr5_1:47735874-47735893 | None:intergenic | 30.0% | |
| ATACTTTAGCTGTTCATAAG+AGG | + | chr5_1:47735873-47735892 | Msa0734120:intron | 30.0% | |
| AAAGTGAGTCATGATTCAAT+TGG | - | chr5_1:47736021-47736040 | None:intergenic | 30.0% | |
| CAAACAATAACAGTAGGTAA+AGG | - | chr5_1:47736281-47736300 | None:intergenic | 30.0% | |
| CAAGATCAAACAATAACAGT+AGG | - | chr5_1:47736287-47736306 | None:intergenic | 30.0% | |
| AGTAAAAAAAAGGGGAAAAG+GGG | - | chr5_1:47736403-47736422 | None:intergenic | 30.0% | |
| CAAGTAAAAAAAAGGGGAAA+AGG | - | chr5_1:47736405-47736424 | None:intergenic | 30.0% | |
| ! | TGTATCACATCAATTTTTGC+AGG | + | chr5_1:47736495-47736514 | Msa0734120:intron | 30.0% |
| GATTTCAGTTTGATGAAAAC+AGG | + | chr5_1:47736715-47736734 | Msa0734120:intron | 30.0% | |
| AATTCTTTCGGATCGAATAT+TGG | + | chr5_1:47736745-47736764 | Msa0734120:CDS | 30.0% | |
| TCGAATATTGGAAAAGATGA+AGG | + | chr5_1:47736757-47736776 | Msa0734120:CDS | 30.0% | |
| TAAGATAGATAGAGGTCAAA+GGG | - | chr5_1:47737015-47737034 | None:intergenic | 30.0% | |
| ATAAGATAGATAGAGGTCAA+AGG | - | chr5_1:47737016-47737035 | None:intergenic | 30.0% | |
| ! | AATTTCACACATCTGTTTTC+CGG | + | chr5_1:47737074-47737093 | Msa0734120:intron | 30.0% |
| CTGCTAATGTCAAAAACATA+AGG | - | chr5_1:47737195-47737214 | None:intergenic | 30.0% | |
| AATGTATTTACCCTGGTAAA+AGG | - | chr5_1:47737499-47737518 | None:intergenic | 30.0% | |
| CAATAATCCTCAGACATCAA+AGG | + | chr5_1:47735712-47735731 | Msa0734120:five_prime_UTR | 35.0% | |
| AAACAAACCTTTGATGTCTG+AGG | - | chr5_1:47735722-47735741 | None:intergenic | 35.0% | |
| TTCATAAGAGGTAAGTTCTG+TGG | + | chr5_1:47735885-47735904 | Msa0734120:intron | 35.0% | |
| TTTGATCAATGATCCATGCA+TGG | + | chr5_1:47736038-47736057 | Msa0734120:intron | 35.0% | |
| !! | AATGTTTAAGGGCGTTGTTT+AGG | + | chr5_1:47736073-47736092 | Msa0734120:intron | 35.0% |
| TAACAGAAGTAGCATATGGT+TGG | - | chr5_1:47736213-47736232 | None:intergenic | 35.0% | |
| CAGTTAACAGAAGTAGCATA+TGG | - | chr5_1:47736217-47736236 | None:intergenic | 35.0% | |
| ! | TTTGATCTTGTTGTCCATCA+AGG | + | chr5_1:47736297-47736316 | Msa0734120:intron | 35.0% |
| ! | TTGATCTTGTTGTCCATCAA+GGG | + | chr5_1:47736298-47736317 | Msa0734120:intron | 35.0% |
| ATGAAATACCAATCCCTTGA+TGG | - | chr5_1:47736314-47736333 | None:intergenic | 35.0% | |
| TTAGAAGATGACTATCACCA+AGG | + | chr5_1:47736347-47736366 | Msa0734120:exon | 35.0% | |
| TGCAGGTATTACTCATTGTA+TGG | + | chr5_1:47736512-47736531 | Msa0734120:intron | 35.0% | |
| GTAGTTAGGATCATTTGTCT+CGG | + | chr5_1:47736682-47736701 | Msa0734120:intron | 35.0% | |
| ACAGGTACCTGAAATTCTTT+CGG | + | chr5_1:47736733-47736752 | Msa0734120:intron | 35.0% | |
| ATTCGATCCGAAAGAATTTC+AGG | - | chr5_1:47736743-47736762 | None:intergenic | 35.0% | |
| TTAATGTCAGCTACATCATC+TGG | - | chr5_1:47736794-47736813 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTTCCTTCACGTTT+TGG | + | chr5_1:47736848-47736867 | Msa0734120:CDS | 35.0% |
| !! | TTCTGGAGTACTGGATTTAA+CGG | + | chr5_1:47736959-47736978 | Msa0734120:CDS | 35.0% |
| AAGATAGATAGAGGTCAAAG+GGG | - | chr5_1:47737014-47737033 | None:intergenic | 35.0% | |
| ATGTGTGAAATTCTGTCACA+TGG | - | chr5_1:47737066-47737085 | None:intergenic | 35.0% | |
| ! | TTTTCCGGTACATTTTTCTC+AGG | + | chr5_1:47737089-47737108 | Msa0734120:intron | 35.0% |
| TAGTCCTGAGAAAAATGTAC+CGG | - | chr5_1:47737096-47737115 | None:intergenic | 35.0% | |
| TCAGTTTCCTCTTTATGTCA+TGG | + | chr5_1:47737294-47737313 | Msa0734120:intron | 35.0% | |
| ATAACTCAGTTAGCTCATCA+TGG | + | chr5_1:47737333-47737352 | Msa0734120:intron | 35.0% | |
| ! | ATTTCCAAAGGTGTATCCAA+GGG | - | chr5_1:47737373-47737392 | None:intergenic | 35.0% |
| ! | TTTGAGATGGATGAGGTAAA+AGG | + | chr5_1:47737399-47737418 | Msa0734120:CDS | 35.0% |
| TTTCAGCAATGTATTTACCC+TGG | - | chr5_1:47737506-47737525 | None:intergenic | 35.0% | |
| CAATAATCCTCAGACATCAA+AGG | + | chr5_1:47735712-47735731 | Msa0734120:five_prime_UTR | 35.0% | |
| AAACAAACCTTTGATGTCTG+AGG | - | chr5_1:47735722-47735741 | None:intergenic | 35.0% | |
| TTCATAAGAGGTAAGTTCTG+TGG | + | chr5_1:47735885-47735904 | Msa0734120:intron | 35.0% | |
| TTTGATCAATGATCCATGCA+TGG | + | chr5_1:47736038-47736057 | Msa0734120:intron | 35.0% | |
| !! | AATGTTTAAGGGCGTTGTTT+AGG | + | chr5_1:47736073-47736092 | Msa0734120:intron | 35.0% |
| TAACAGAAGTAGCATATGGT+TGG | - | chr5_1:47736213-47736232 | None:intergenic | 35.0% | |
| CAGTTAACAGAAGTAGCATA+TGG | - | chr5_1:47736217-47736236 | None:intergenic | 35.0% | |
| ! | TTTGATCTTGTTGTCCATCA+AGG | + | chr5_1:47736297-47736316 | Msa0734120:intron | 35.0% |
| ! | TTGATCTTGTTGTCCATCAA+GGG | + | chr5_1:47736298-47736317 | Msa0734120:intron | 35.0% |
| ATGAAATACCAATCCCTTGA+TGG | - | chr5_1:47736314-47736333 | None:intergenic | 35.0% | |
| TTAGAAGATGACTATCACCA+AGG | + | chr5_1:47736347-47736366 | Msa0734120:exon | 35.0% | |
| TGCAGGTATTACTCATTGTA+TGG | + | chr5_1:47736512-47736531 | Msa0734120:intron | 35.0% | |
| GTAGTTAGGATCATTTGTCT+CGG | + | chr5_1:47736682-47736701 | Msa0734120:intron | 35.0% | |
| ACAGGTACCTGAAATTCTTT+CGG | + | chr5_1:47736733-47736752 | Msa0734120:intron | 35.0% | |
| ATTCGATCCGAAAGAATTTC+AGG | - | chr5_1:47736743-47736762 | None:intergenic | 35.0% | |
| TTAATGTCAGCTACATCATC+TGG | - | chr5_1:47736794-47736813 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTTCCTTCACGTTT+TGG | + | chr5_1:47736848-47736867 | Msa0734120:CDS | 35.0% |
| !! | TTCTGGAGTACTGGATTTAA+CGG | + | chr5_1:47736959-47736978 | Msa0734120:CDS | 35.0% |
| AAGATAGATAGAGGTCAAAG+GGG | - | chr5_1:47737014-47737033 | None:intergenic | 35.0% | |
| ATGTGTGAAATTCTGTCACA+TGG | - | chr5_1:47737066-47737085 | None:intergenic | 35.0% | |
| ! | TTTTCCGGTACATTTTTCTC+AGG | + | chr5_1:47737089-47737108 | Msa0734120:intron | 35.0% |
| TAGTCCTGAGAAAAATGTAC+CGG | - | chr5_1:47737096-47737115 | None:intergenic | 35.0% | |
| TCAGTTTCCTCTTTATGTCA+TGG | + | chr5_1:47737294-47737313 | Msa0734120:intron | 35.0% | |
| ATAACTCAGTTAGCTCATCA+TGG | + | chr5_1:47737333-47737352 | Msa0734120:intron | 35.0% | |
| ! | ATTTCCAAAGGTGTATCCAA+GGG | - | chr5_1:47737373-47737392 | None:intergenic | 35.0% |
| ! | TTTGAGATGGATGAGGTAAA+AGG | + | chr5_1:47737399-47737418 | Msa0734120:CDS | 35.0% |
| TTTCAGCAATGTATTTACCC+TGG | - | chr5_1:47737506-47737525 | None:intergenic | 35.0% | |
| TTGTGTGTTGTACTGTTTCC+TGG | + | chr5_1:47735671-47735690 | Msa0734120:five_prime_UTR | 40.0% | |
| AACAGCTAAAGTATGGCTAG+AGG | - | chr5_1:47735867-47735886 | None:intergenic | 40.0% | |
| TTGTTAGCATGATCCATGCA+TGG | - | chr5_1:47736054-47736073 | None:intergenic | 40.0% | |
| TGCTTACACAATGTAGACCT+TGG | - | chr5_1:47736367-47736386 | None:intergenic | 40.0% | |
| GTATGGACATGTGAACACTA+TGG | + | chr5_1:47736529-47736548 | Msa0734120:CDS | 40.0% | |
| ! | TATGGCAAGAGAAGTACACA+AGG | + | chr5_1:47736547-47736566 | Msa0734120:CDS | 40.0% |
| ! | ATGGCAAGAGAAGTACACAA+GGG | + | chr5_1:47736548-47736567 | Msa0734120:CDS | 40.0% |
| !! | AAGGTGTTGAAGCAACACTT+TGG | + | chr5_1:47736585-47736604 | Msa0734120:CDS | 40.0% |
| TGTTGAAGCAACACTTTGGA+GGG | + | chr5_1:47736589-47736608 | Msa0734120:CDS | 40.0% | |
| ! | TCAGCTACATCATCTGGTTT+AGG | - | chr5_1:47736788-47736807 | None:intergenic | 40.0% |
| TGATGTAGCTGACATTAAGC+CGG | + | chr5_1:47736796-47736815 | Msa0734120:CDS | 40.0% | |
| GAGGCTGATGCTTTGATATT+TGG | + | chr5_1:47736830-47736849 | Msa0734120:CDS | 40.0% | |
| !! | TCTGGAGTACTGGATTTAAC+GGG | + | chr5_1:47736960-47736979 | Msa0734120:CDS | 40.0% |
| GTCACATGGCAGTAGAAATT+AGG | - | chr5_1:47737052-47737071 | None:intergenic | 40.0% | |
| TGTTGGAGTTCATGCTTCAT+AGG | + | chr5_1:47737253-47737272 | Msa0734120:intron | 40.0% | |
| TCTGCAACCATGACATAAAG+AGG | - | chr5_1:47737304-47737323 | None:intergenic | 40.0% | |
| CTTTATGTCATGGTTGCAGA+TGG | + | chr5_1:47737304-47737323 | Msa0734120:intron | 40.0% | |
| ! | TTTCCAAAGGTGTATCCAAG+GGG | - | chr5_1:47737372-47737391 | None:intergenic | 40.0% |
| ! | CATTTCCAAAGGTGTATCCA+AGG | - | chr5_1:47737374-47737393 | None:intergenic | 40.0% |
| ! | CTTGGATACACCTTTGGAAA+TGG | + | chr5_1:47737372-47737391 | Msa0734120:CDS | 40.0% |
| ! | CTCAAACATGCCATTTCCAA+AGG | - | chr5_1:47737385-47737404 | None:intergenic | 40.0% |
| TGGAAATGGCATGTTTGAGA+TGG | + | chr5_1:47737386-47737405 | Msa0734120:CDS | 40.0% | |
| TTGTGTGTTGTACTGTTTCC+TGG | + | chr5_1:47735671-47735690 | Msa0734120:five_prime_UTR | 40.0% | |
| AACAGCTAAAGTATGGCTAG+AGG | - | chr5_1:47735867-47735886 | None:intergenic | 40.0% | |
| TTGTTAGCATGATCCATGCA+TGG | - | chr5_1:47736054-47736073 | None:intergenic | 40.0% | |
| TGCTTACACAATGTAGACCT+TGG | - | chr5_1:47736367-47736386 | None:intergenic | 40.0% | |
| GTATGGACATGTGAACACTA+TGG | + | chr5_1:47736529-47736548 | Msa0734120:CDS | 40.0% | |
| ! | TATGGCAAGAGAAGTACACA+AGG | + | chr5_1:47736547-47736566 | Msa0734120:CDS | 40.0% |
| ! | ATGGCAAGAGAAGTACACAA+GGG | + | chr5_1:47736548-47736567 | Msa0734120:CDS | 40.0% |
| !! | AAGGTGTTGAAGCAACACTT+TGG | + | chr5_1:47736585-47736604 | Msa0734120:CDS | 40.0% |
| TGTTGAAGCAACACTTTGGA+GGG | + | chr5_1:47736589-47736608 | Msa0734120:CDS | 40.0% | |
| ! | TCAGCTACATCATCTGGTTT+AGG | - | chr5_1:47736788-47736807 | None:intergenic | 40.0% |
| TGATGTAGCTGACATTAAGC+CGG | + | chr5_1:47736796-47736815 | Msa0734120:CDS | 40.0% | |
| GAGGCTGATGCTTTGATATT+TGG | + | chr5_1:47736830-47736849 | Msa0734120:CDS | 40.0% | |
| !! | TCTGGAGTACTGGATTTAAC+GGG | + | chr5_1:47736960-47736979 | Msa0734120:CDS | 40.0% |
| GTCACATGGCAGTAGAAATT+AGG | - | chr5_1:47737052-47737071 | None:intergenic | 40.0% | |
| TGTTGGAGTTCATGCTTCAT+AGG | + | chr5_1:47737253-47737272 | Msa0734120:intron | 40.0% | |
| TCTGCAACCATGACATAAAG+AGG | - | chr5_1:47737304-47737323 | None:intergenic | 40.0% | |
| CTTTATGTCATGGTTGCAGA+TGG | + | chr5_1:47737304-47737323 | Msa0734120:intron | 40.0% | |
| ! | TTTCCAAAGGTGTATCCAAG+GGG | - | chr5_1:47737372-47737391 | None:intergenic | 40.0% |
| ! | CATTTCCAAAGGTGTATCCA+AGG | - | chr5_1:47737374-47737393 | None:intergenic | 40.0% |
| ! | CTTGGATACACCTTTGGAAA+TGG | + | chr5_1:47737372-47737391 | Msa0734120:CDS | 40.0% |
| ! | CTCAAACATGCCATTTCCAA+AGG | - | chr5_1:47737385-47737404 | None:intergenic | 40.0% |
| TGGAAATGGCATGTTTGAGA+TGG | + | chr5_1:47737386-47737405 | Msa0734120:CDS | 40.0% | |
| AGCAAAACATGCGTCCAGTT+TGG | - | chr5_1:47735588-47735607 | None:intergenic | 45.0% | |
| ! | GTATGGAGCTTTGTGTTGTG+TGG | - | chr5_1:47735618-47735637 | None:intergenic | 45.0% |
| ! | CTTGTTGTCCATCAAGGGAT+TGG | + | chr5_1:47736303-47736322 | Msa0734120:intron | 45.0% |
| ! | TGGCAAGAGAAGTACACAAG+GGG | + | chr5_1:47736549-47736568 | Msa0734120:CDS | 45.0% |
| GTGTTGAAGCAACACTTTGG+AGG | + | chr5_1:47736588-47736607 | Msa0734120:CDS | 45.0% | |
| ! | GCTACATCATCTGGTTTAGG+AGG | - | chr5_1:47736785-47736804 | None:intergenic | 45.0% |
| CATTAAGCCGGAACAACTTG+TGG | + | chr5_1:47736808-47736827 | Msa0734120:CDS | 45.0% | |
| GGCATCATACCAAAACGTGA+AGG | - | chr5_1:47736860-47736879 | None:intergenic | 45.0% | |
| !! | CTGGAGTACTGGATTTAACG+GGG | + | chr5_1:47736961-47736980 | Msa0734120:CDS | 45.0% |
| !! | TGGAGTACTGGATTTAACGG+GGG | + | chr5_1:47736962-47736981 | Msa0734120:CDS | 45.0% |
| ! | TGGCATGTTTGAGATGGATG+AGG | + | chr5_1:47737392-47737411 | Msa0734120:CDS | 45.0% |
| GAGATGGATGAGGTAAAAGG+AGG | + | chr5_1:47737402-47737421 | Msa0734120:CDS | 45.0% | |
| AGATGGAACTCGTCAACCTA+CGG | + | chr5_1:47737455-47737474 | Msa0734120:CDS | 45.0% | |
| AGCAAAACATGCGTCCAGTT+TGG | - | chr5_1:47735588-47735607 | None:intergenic | 45.0% | |
| ! | GTATGGAGCTTTGTGTTGTG+TGG | - | chr5_1:47735618-47735637 | None:intergenic | 45.0% |
| ! | CTTGTTGTCCATCAAGGGAT+TGG | + | chr5_1:47736303-47736322 | Msa0734120:intron | 45.0% |
| ! | TGGCAAGAGAAGTACACAAG+GGG | + | chr5_1:47736549-47736568 | Msa0734120:CDS | 45.0% |
| GTGTTGAAGCAACACTTTGG+AGG | + | chr5_1:47736588-47736607 | Msa0734120:CDS | 45.0% | |
| ! | GCTACATCATCTGGTTTAGG+AGG | - | chr5_1:47736785-47736804 | None:intergenic | 45.0% |
| CATTAAGCCGGAACAACTTG+TGG | + | chr5_1:47736808-47736827 | Msa0734120:CDS | 45.0% | |
| GGCATCATACCAAAACGTGA+AGG | - | chr5_1:47736860-47736879 | None:intergenic | 45.0% | |
| !! | CTGGAGTACTGGATTTAACG+GGG | + | chr5_1:47736961-47736980 | Msa0734120:CDS | 45.0% |
| !! | TGGAGTACTGGATTTAACGG+GGG | + | chr5_1:47736962-47736981 | Msa0734120:CDS | 45.0% |
| ! | TGGCATGTTTGAGATGGATG+AGG | + | chr5_1:47737392-47737411 | Msa0734120:CDS | 45.0% |
| GAGATGGATGAGGTAAAAGG+AGG | + | chr5_1:47737402-47737421 | Msa0734120:CDS | 45.0% | |
| AGATGGAACTCGTCAACCTA+CGG | + | chr5_1:47737455-47737474 | Msa0734120:CDS | 45.0% | |
| !! | TATATATTTATATATTTGTA+TGG | - | chr5_1:47735635-47735654 | None:intergenic | 5.0% |
| !! | TAAATATATATATATATCAT+CGG | + | chr5_1:47735645-47735664 | Msa0734120:five_prime_UTR | 5.0% |
| !! | TATATATTTATATATTTGTA+TGG | - | chr5_1:47735635-47735654 | None:intergenic | 5.0% |
| !! | TAAATATATATATATATCAT+CGG | + | chr5_1:47735645-47735664 | Msa0734120:five_prime_UTR | 5.0% |
| ! | GGCAAGAGAAGTACACAAGG+GGG | + | chr5_1:47736550-47736569 | Msa0734120:CDS | 50.0% |
| AAGGGGGCAGCTTCAATTGA+AGG | + | chr5_1:47736566-47736585 | Msa0734120:CDS | 50.0% | |
| TAAGCCGGAACAACTTGTGG+AGG | + | chr5_1:47736811-47736830 | Msa0734120:CDS | 50.0% | |
| TCAGCCTCCACAAGTTGTTC+CGG | - | chr5_1:47736818-47736837 | None:intergenic | 50.0% | |
| TATGATGCCAAGCCAGCTCA+AGG | + | chr5_1:47736871-47736890 | Msa0734120:CDS | 50.0% | |
| AAGGCCTTCTTTGACGCTAC+TGG | + | chr5_1:47736890-47736909 | Msa0734120:CDS | 50.0% | |
| CTCTCCAGTAGCGTCAAAGA+AGG | - | chr5_1:47736897-47736916 | None:intergenic | 50.0% | |
| TTGACGCTACTGGAGAGTTG+TGG | + | chr5_1:47736900-47736919 | Msa0734120:CDS | 50.0% | |
| TGACGCTACTGGAGAGTTGT+GGG | + | chr5_1:47736901-47736920 | Msa0734120:CDS | 50.0% | |
| GCAAACCTGCTGGAATCTTC+TGG | + | chr5_1:47736942-47736961 | Msa0734120:CDS | 50.0% | |
| GTACTCCAGAAGATTCCAGC+AGG | - | chr5_1:47736950-47736969 | None:intergenic | 50.0% | |
| !! | GCTGGAATCTTCTGGAGTAC+TGG | + | chr5_1:47736950-47736969 | Msa0734120:CDS | 50.0% |
| ! | AGTACTGGATTTAACGGGGG+TGG | + | chr5_1:47736965-47736984 | Msa0734120:intron | 50.0% |
| ATACTCACGCTGAGAGTTCC+TGG | - | chr5_1:47736991-47737010 | None:intergenic | 50.0% | |
| GGCATGCTTTATGTTCCCCT+TGG | + | chr5_1:47737354-47737373 | Msa0734120:CDS | 50.0% | |
| GTTCCCCTTGGATACACCTT+TGG | + | chr5_1:47737366-47737385 | Msa0734120:CDS | 50.0% | |
| GGATGAGGTAAAAGGAGGCT+CGG | + | chr5_1:47737407-47737426 | Msa0734120:CDS | 50.0% | |
| ! | CTTCAGCAGGCCTTTTACCA+GGG | + | chr5_1:47737486-47737505 | Msa0734120:CDS | 50.0% |
| ! | GGCAAGAGAAGTACACAAGG+GGG | + | chr5_1:47736550-47736569 | Msa0734120:CDS | 50.0% |
| AAGGGGGCAGCTTCAATTGA+AGG | + | chr5_1:47736566-47736585 | Msa0734120:CDS | 50.0% | |
| TAAGCCGGAACAACTTGTGG+AGG | + | chr5_1:47736811-47736830 | Msa0734120:CDS | 50.0% | |
| TCAGCCTCCACAAGTTGTTC+CGG | - | chr5_1:47736818-47736837 | None:intergenic | 50.0% | |
| TATGATGCCAAGCCAGCTCA+AGG | + | chr5_1:47736871-47736890 | Msa0734120:CDS | 50.0% | |
| AAGGCCTTCTTTGACGCTAC+TGG | + | chr5_1:47736890-47736909 | Msa0734120:CDS | 50.0% | |
| CTCTCCAGTAGCGTCAAAGA+AGG | - | chr5_1:47736897-47736916 | None:intergenic | 50.0% | |
| TTGACGCTACTGGAGAGTTG+TGG | + | chr5_1:47736900-47736919 | Msa0734120:CDS | 50.0% | |
| TGACGCTACTGGAGAGTTGT+GGG | + | chr5_1:47736901-47736920 | Msa0734120:CDS | 50.0% | |
| GCAAACCTGCTGGAATCTTC+TGG | + | chr5_1:47736942-47736961 | Msa0734120:CDS | 50.0% | |
| GTACTCCAGAAGATTCCAGC+AGG | - | chr5_1:47736950-47736969 | None:intergenic | 50.0% | |
| !! | GCTGGAATCTTCTGGAGTAC+TGG | + | chr5_1:47736950-47736969 | Msa0734120:CDS | 50.0% |
| ! | AGTACTGGATTTAACGGGGG+TGG | + | chr5_1:47736965-47736984 | Msa0734120:intron | 50.0% |
| ATACTCACGCTGAGAGTTCC+TGG | - | chr5_1:47736991-47737010 | None:intergenic | 50.0% | |
| GGCATGCTTTATGTTCCCCT+TGG | + | chr5_1:47737354-47737373 | Msa0734120:CDS | 50.0% | |
| GTTCCCCTTGGATACACCTT+TGG | + | chr5_1:47737366-47737385 | Msa0734120:CDS | 50.0% | |
| GGATGAGGTAAAAGGAGGCT+CGG | + | chr5_1:47737407-47737426 | Msa0734120:CDS | 50.0% | |
| ! | CTTCAGCAGGCCTTTTACCA+GGG | + | chr5_1:47737486-47737505 | Msa0734120:CDS | 50.0% |
| AAGAAGGCCTTGAGCTGGCT+TGG | - | chr5_1:47736881-47736900 | None:intergenic | 55.0% | |
| CGTCAAAGAAGGCCTTGAGC+TGG | - | chr5_1:47736886-47736905 | None:intergenic | 55.0% | |
| TGCCTGTGTCCATGTCGTGT+CGG | + | chr5_1:47737223-47737242 | Msa0734120:intron | 55.0% | |
| CACAAACACCCGACACGACA+TGG | - | chr5_1:47737235-47737254 | None:intergenic | 55.0% | |
| GTCGTGTCGGGTGTTTGTGT+TGG | + | chr5_1:47737236-47737255 | Msa0734120:intron | 55.0% | |
| GTAAAAGGAGGCTCGGCGTA+TGG | + | chr5_1:47737414-47737433 | Msa0734120:CDS | 55.0% | |
| ! | TATGGCGCTGGAACTTTCGC+AGG | + | chr5_1:47737432-47737451 | Msa0734120:CDS | 55.0% |
| GCTGGAACTTTCGCAGGAGA+TGG | + | chr5_1:47737438-47737457 | Msa0734120:CDS | 55.0% | |
| ! | TGCTGAAGCTCTAGCTCCGT+AGG | - | chr5_1:47737474-47737493 | None:intergenic | 55.0% |
| TACGGAGCTAGAGCTTCAGC+AGG | + | chr5_1:47737473-47737492 | Msa0734120:CDS | 55.0% | |
| ! | GCTTCAGCAGGCCTTTTACC+AGG | + | chr5_1:47737485-47737504 | Msa0734120:CDS | 55.0% |
| AAGAAGGCCTTGAGCTGGCT+TGG | - | chr5_1:47736881-47736900 | None:intergenic | 55.0% | |
| CGTCAAAGAAGGCCTTGAGC+TGG | - | chr5_1:47736886-47736905 | None:intergenic | 55.0% | |
| TGCCTGTGTCCATGTCGTGT+CGG | + | chr5_1:47737223-47737242 | Msa0734120:intron | 55.0% | |
| CACAAACACCCGACACGACA+TGG | - | chr5_1:47737235-47737254 | None:intergenic | 55.0% | |
| GTCGTGTCGGGTGTTTGTGT+TGG | + | chr5_1:47737236-47737255 | Msa0734120:intron | 55.0% | |
| GTAAAAGGAGGCTCGGCGTA+TGG | + | chr5_1:47737414-47737433 | Msa0734120:CDS | 55.0% | |
| ! | TATGGCGCTGGAACTTTCGC+AGG | + | chr5_1:47737432-47737451 | Msa0734120:CDS | 55.0% |
| GCTGGAACTTTCGCAGGAGA+TGG | + | chr5_1:47737438-47737457 | Msa0734120:CDS | 55.0% | |
| ! | TGCTGAAGCTCTAGCTCCGT+AGG | - | chr5_1:47737474-47737493 | None:intergenic | 55.0% |
| TACGGAGCTAGAGCTTCAGC+AGG | + | chr5_1:47737473-47737492 | Msa0734120:CDS | 55.0% | |
| ! | GCTTCAGCAGGCCTTTTACC+AGG | + | chr5_1:47737485-47737504 | Msa0734120:CDS | 55.0% |
| TGGATTTAACGGGGGTGGCC+AGG | + | chr5_1:47736970-47736989 | Msa0734120:intron | 60.0% | |
| GCCTGTGTCCATGTCGTGTC+GGG | + | chr5_1:47737224-47737243 | Msa0734120:intron | 60.0% | |
| ACCCGACACGACATGGACAC+AGG | - | chr5_1:47737228-47737247 | None:intergenic | 60.0% | |
| TGGATTTAACGGGGGTGGCC+AGG | + | chr5_1:47736970-47736989 | Msa0734120:intron | 60.0% | |
| GCCTGTGTCCATGTCGTGTC+GGG | + | chr5_1:47737224-47737243 | Msa0734120:intron | 60.0% | |
| ACCCGACACGACATGGACAC+AGG | - | chr5_1:47737228-47737247 | None:intergenic | 60.0% | |
| TGGGCGTCTCAAGCACTCGC+AGG | + | chr5_1:47736920-47736939 | Msa0734120:CDS | 65.0% | |
| GCACTCGCAGGCAAACCTGC+TGG | + | chr5_1:47736932-47736951 | Msa0734120:CDS | 65.0% | |
| TGGGCGTCTCAAGCACTCGC+AGG | + | chr5_1:47736920-47736939 | Msa0734120:CDS | 65.0% | |
| GCACTCGCAGGCAAACCTGC+TGG | + | chr5_1:47736932-47736951 | Msa0734120:CDS | 65.0% | |
| GGAGGCTCGGCGTATGGCGC+TGG | + | chr5_1:47737420-47737439 | Msa0734120:CDS | 75.0% | |
| GGAGGCTCGGCGTATGGCGC+TGG | + | chr5_1:47737420-47737439 | Msa0734120:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 47735523 | 47737545 | 47735523 | ID=Msa0734120;Name=Msa0734120 |
| chr5_1 | mRNA | 47735523 | 47737545 | 47735523 | ID=Msa0734120-mRNA-1;Parent=Msa0734120;Name=Msa0734120-mRNA-1;_AED=0.24;_eAED=0.24;_QI=246|0.75|0.6|1|0.5|0.2|5|0|189 |
| chr5_1 | exon | 47735523 | 47735733 | 47735523 | ID=Msa0734120-mRNA-1:exon:13679;Parent=Msa0734120-mRNA-1 |
| chr5_1 | exon | 47736319 | 47736379 | 47736319 | ID=Msa0734120-mRNA-1:exon:13680;Parent=Msa0734120-mRNA-1 |
| chr5_1 | exon | 47736517 | 47736610 | 47736517 | ID=Msa0734120-mRNA-1:exon:13681;Parent=Msa0734120-mRNA-1 |
| chr5_1 | exon | 47736737 | 47736983 | 47736737 | ID=Msa0734120-mRNA-1:exon:13682;Parent=Msa0734120-mRNA-1 |
| chr5_1 | exon | 47737346 | 47737545 | 47737346 | ID=Msa0734120-mRNA-1:exon:13683;Parent=Msa0734120-mRNA-1 |
| chr5_1 | five_prime_UTR | 47735523 | 47735733 | 47735523 | ID=Msa0734120-mRNA-1:five_prime_utr;Parent=Msa0734120-mRNA-1 |
| chr5_1 | five_prime_UTR | 47736319 | 47736353 | 47736319 | ID=Msa0734120-mRNA-1:five_prime_utr;Parent=Msa0734120-mRNA-1 |
| chr5_1 | CDS | 47736354 | 47736379 | 47736354 | ID=Msa0734120-mRNA-1:cds;Parent=Msa0734120-mRNA-1 |
| chr5_1 | CDS | 47736517 | 47736610 | 47736517 | ID=Msa0734120-mRNA-1:cds;Parent=Msa0734120-mRNA-1 |
| chr5_1 | CDS | 47736737 | 47736983 | 47736737 | ID=Msa0734120-mRNA-1:cds;Parent=Msa0734120-mRNA-1 |
| chr5_1 | CDS | 47737346 | 47737545 | 47737346 | ID=Msa0734120-mRNA-1:cds;Parent=Msa0734120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
