Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349090 | KEH37091.1 | 88.288 | 111 | 13 | 0 | 1 | 111 | 1 | 111 | 4.90e-60 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349090 | A0A072V637 | 88.288 | 111 | 13 | 0 | 1 | 111 | 1 | 111 | 2.34e-60 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022350 | Msa1349090 | 0.934653 | 2.892283e-96 | -8.615850e-47 |
| Msa0533430 | Msa1349090 | 0.817547 | 3.116290e-52 | -8.615850e-47 |
| Msa0902020 | Msa1349090 | 0.806898 | 6.576047e-50 | -8.615850e-47 |
| Msa0963310 | Msa1349090 | 0.804550 | 2.047154e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349090 | MtrunA17_Chr2g0293221 | 88.288 | 111 | 13 | 0 | 1 | 111 | 1 | 111 | 4.68e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGGGCTAATTTGTTTC+AGG | 0.217226 | tig0010653:-59590 | None:intergenic |
| GCAGAATAGGAGAAGAAAAT+AGG | 0.217982 | tig0010653:-59606 | None:intergenic |
| GAATCTGTAGAGCGGGAAAT+TGG | 0.230915 | tig0010653:+59676 | Msa1349090:CDS |
| TTCTGATATTAAACGTTATA+AGG | 0.239982 | tig0010653:+59819 | Msa1349090:CDS |
| GGTTCAGATGATGAAGAATC+AGG | 0.362544 | tig0010653:+59720 | Msa1349090:CDS |
| TCTACGGCATTTGAAGGTTT+CGG | 0.374083 | tig0010653:-59655 | None:intergenic |
| TTTGTTTCAGGTGAAGGTTT+CGG | 0.399316 | tig0010653:-59578 | None:intergenic |
| CGCATCGCGTGATGCAGAAT+AGG | 0.405986 | tig0010653:-59619 | None:intergenic |
| CAGAATAGGAGAAGAAAATA+GGG | 0.432768 | tig0010653:-59605 | None:intergenic |
| TTATAAGGATCAAATTTCTC+TGG | 0.442275 | tig0010653:+59834 | Msa1349090:CDS |
| GGCTAATTTGTTTCAGGTGA+AGG | 0.450561 | tig0010653:-59584 | None:intergenic |
| AATCTGTAGAGCGGGAAATT+GGG | 0.454600 | tig0010653:+59677 | Msa1349090:CDS |
| ACAGATTCTACGGCATTTGA+AGG | 0.458023 | tig0010653:-59661 | None:intergenic |
| AGCTAAGGCTGATTTGATGA+TGG | 0.458362 | tig0010653:+59992 | Msa1349090:CDS |
| TTCCCGCTCTACAGATTCTA+CGG | 0.498936 | tig0010653:-59671 | None:intergenic |
| TGCCGTAGAATCTGTAGAGC+GGG | 0.500688 | tig0010653:+59669 | Msa1349090:CDS |
| AAAATTGCAGAATCAACGTT+GGG | 0.501820 | tig0010653:+59795 | Msa1349090:CDS |
| GGATGAAGAGGAGGCGGTGA+AGG | 0.514242 | tig0010653:-59557 | None:intergenic |
| GCTAAGGCTGATTTGATGAT+GGG | 0.544049 | tig0010653:+59993 | Msa1349090:CDS |
| TGAAGAGGAGGCGGTGAAGG+AGG | 0.544990 | tig0010653:-59554 | None:intergenic |
| ACGGTTGCTTGAGGAAGCTA+AGG | 0.548023 | tig0010653:+59977 | Msa1349090:CDS |
| TTGTAGAAAGTTCTGTTGAT+CGG | 0.548922 | tig0010653:-59764 | None:intergenic |
| TAAAATTGCAGAATCAACGT+TGG | 0.578447 | tig0010653:+59794 | Msa1349090:CDS |
| GGTGAAGGTTTCGGATGAAG+AGG | 0.578632 | tig0010653:-59569 | None:intergenic |
| GGTTTCGGATGAAGAGGAGG+CGG | 0.608657 | tig0010653:-59563 | None:intergenic |
| GAAGGTTTCGGATGAAGAGG+AGG | 0.626161 | tig0010653:-59566 | None:intergenic |
| AGAGAAGAAACGGTTGCTTG+AGG | 0.641429 | tig0010653:+59968 | Msa1349090:CDS |
| ATGCCGTAGAATCTGTAGAG+CGG | 0.698197 | tig0010653:+59668 | Msa1349090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTAATTTCATTTTT+AGG | + | tig0010653:59859-59878 | Msa1349090:intron | 10.0% |
| !!! | ATTGATTAATTTCATTTTTA+GGG | + | tig0010653:59860-59879 | Msa1349090:intron | 10.0% |
| !! | AAAAAAAATTGAAAAAAGAA+TGG | + | tig0010653:59889-59908 | Msa1349090:intron | 10.0% |
| !!! | AATTGATTAATTTCATTTTT+AGG | + | tig0010653:59859-59878 | Msa1349090:intron | 10.0% |
| !!! | ATTGATTAATTTCATTTTTA+GGG | + | tig0010653:59860-59879 | Msa1349090:intron | 10.0% |
| !! | AAAAAAAATTGAAAAAAGAA+TGG | + | tig0010653:59889-59908 | Msa1349090:intron | 10.0% |
| !!! | AAAAAGAATGGTTTTTTTAA+TGG | + | tig0010653:59901-59920 | Msa1349090:intron | 15.0% |
| !!! | AAAAGAATGGTTTTTTTAAT+GGG | + | tig0010653:59902-59921 | Msa1349090:intron | 15.0% |
| !!! | AAAATCTTCTATTTTGAAAT+GGG | + | tig0010653:60028-60047 | Msa1349090:CDS | 15.0% |
| !!! | AAAAAGAATGGTTTTTTTAA+TGG | + | tig0010653:59901-59920 | Msa1349090:intron | 15.0% |
| !!! | AAAAGAATGGTTTTTTTAAT+GGG | + | tig0010653:59902-59921 | Msa1349090:intron | 15.0% |
| !!! | AAAATCTTCTATTTTGAAAT+GGG | + | tig0010653:60028-60047 | Msa1349090:CDS | 15.0% |
| !! | TTCTGATATTAAACGTTATA+AGG | + | tig0010653:59819-59838 | Msa1349090:CDS | 20.0% |
| !!! | GAAAATCTTCTATTTTGAAA+TGG | + | tig0010653:60027-60046 | Msa1349090:CDS | 20.0% |
| !! | ATCAAAAACATGAAAGAAAA+AGG | - | tig0010653:60067-60086 | None:intergenic | 20.0% |
| !!! | CTTTCATGTTTTTGATTAAT+TGG | + | tig0010653:60071-60090 | Msa1349090:intron | 20.0% |
| !!! | TAATTGGTTGGTTTTTAATT+AGG | + | tig0010653:60087-60106 | Msa1349090:intron | 20.0% |
| !!! | TAATTAGGTTGTTTTTTGAT+CGG | + | tig0010653:60102-60121 | Msa1349090:intron | 20.0% |
| !! | TACAAATATTCAAACCAATA+AGG | - | tig0010653:60239-60258 | None:intergenic | 20.0% |
| !! | GAATATTTGTATAGAAAGTT+AGG | + | tig0010653:60248-60267 | Msa1349090:intron | 20.0% |
| !! | TTCTGATATTAAACGTTATA+AGG | + | tig0010653:59819-59838 | Msa1349090:CDS | 20.0% |
| !!! | GAAAATCTTCTATTTTGAAA+TGG | + | tig0010653:60027-60046 | Msa1349090:CDS | 20.0% |
| !! | ATCAAAAACATGAAAGAAAA+AGG | - | tig0010653:60067-60086 | None:intergenic | 20.0% |
| !!! | CTTTCATGTTTTTGATTAAT+TGG | + | tig0010653:60071-60090 | Msa1349090:intron | 20.0% |
| !!! | TAATTGGTTGGTTTTTAATT+AGG | + | tig0010653:60087-60106 | Msa1349090:intron | 20.0% |
| !!! | TAATTAGGTTGTTTTTTGAT+CGG | + | tig0010653:60102-60121 | Msa1349090:intron | 20.0% |
| !! | TACAAATATTCAAACCAATA+AGG | - | tig0010653:60239-60258 | None:intergenic | 20.0% |
| !! | GAATATTTGTATAGAAAGTT+AGG | + | tig0010653:60248-60267 | Msa1349090:intron | 20.0% |
| ! | GAAAAAAATATTCAGCACTT+TGG | + | tig0010653:59699-59718 | Msa1349090:CDS | 25.0% |
| ! | TTATAAGGATCAAATTTCTC+TGG | + | tig0010653:59834-59853 | Msa1349090:CDS | 25.0% |
| !!! | TGATTTTTGAAGAGAAGAAA+CGG | + | tig0010653:59958-59977 | Msa1349090:CDS | 25.0% |
| !!! | TTCTATTTTGAAATGGGTTT+TGG | + | tig0010653:60034-60053 | Msa1349090:CDS | 25.0% |
| !!! | TCTATTTTGAAATGGGTTTT+GGG | + | tig0010653:60035-60054 | Msa1349090:CDS | 25.0% |
| !!! | CATGTTTTTGATTAATTGGT+TGG | + | tig0010653:60075-60094 | Msa1349090:intron | 25.0% |
| !!! | TGTTTTGTTGTTTTTGTTCT+TGG | + | tig0010653:60185-60204 | Msa1349090:intron | 25.0% |
| ! | TTTGATGTTATGTTCCTTAT+TGG | + | tig0010653:60222-60241 | Msa1349090:intron | 25.0% |
| ! | AATTCCAAAAATCAACTTCT+GGG | - | tig0010653:60529-60548 | None:intergenic | 25.0% |
| ! | AAATTCCAAAAATCAACTTC+TGG | - | tig0010653:60530-60549 | None:intergenic | 25.0% |
| ! | GAAAAAAATATTCAGCACTT+TGG | + | tig0010653:59699-59718 | Msa1349090:CDS | 25.0% |
| ! | TTATAAGGATCAAATTTCTC+TGG | + | tig0010653:59834-59853 | Msa1349090:CDS | 25.0% |
| !!! | TGATTTTTGAAGAGAAGAAA+CGG | + | tig0010653:59958-59977 | Msa1349090:CDS | 25.0% |
| !!! | TTCTATTTTGAAATGGGTTT+TGG | + | tig0010653:60034-60053 | Msa1349090:CDS | 25.0% |
| !!! | TCTATTTTGAAATGGGTTTT+GGG | + | tig0010653:60035-60054 | Msa1349090:CDS | 25.0% |
| !!! | CATGTTTTTGATTAATTGGT+TGG | + | tig0010653:60075-60094 | Msa1349090:intron | 25.0% |
| !!! | TGTTTTGTTGTTTTTGTTCT+TGG | + | tig0010653:60185-60204 | Msa1349090:intron | 25.0% |
| ! | TTTGATGTTATGTTCCTTAT+TGG | + | tig0010653:60222-60241 | Msa1349090:intron | 25.0% |
| ! | AATTCCAAAAATCAACTTCT+GGG | - | tig0010653:60529-60548 | None:intergenic | 25.0% |
| ! | AAATTCCAAAAATCAACTTC+TGG | - | tig0010653:60530-60549 | None:intergenic | 25.0% |
| !! | AAATAGGGCTAATTTGTTTC+AGG | - | tig0010653:59593-59612 | None:intergenic | 30.0% |
| CAGAATAGGAGAAGAAAATA+GGG | - | tig0010653:59608-59627 | None:intergenic | 30.0% | |
| TTGTAGAAAGTTCTGTTGAT+CGG | - | tig0010653:59767-59786 | None:intergenic | 30.0% | |
| TAAAATTGCAGAATCAACGT+TGG | + | tig0010653:59794-59813 | Msa1349090:CDS | 30.0% | |
| AAAATTGCAGAATCAACGTT+GGG | + | tig0010653:59795-59814 | Msa1349090:CDS | 30.0% | |
| CAAATTGAGATTGATACATG+TGG | - | tig0010653:60415-60434 | None:intergenic | 30.0% | |
| !! | CCTCTACAATTGATTTTCTA+GGG | + | tig0010653:60462-60481 | Msa1349090:intron | 30.0% |
| !! | AAATAGGGCTAATTTGTTTC+AGG | - | tig0010653:59593-59612 | None:intergenic | 30.0% |
| CAGAATAGGAGAAGAAAATA+GGG | - | tig0010653:59608-59627 | None:intergenic | 30.0% | |
| TTGTAGAAAGTTCTGTTGAT+CGG | - | tig0010653:59767-59786 | None:intergenic | 30.0% | |
| TAAAATTGCAGAATCAACGT+TGG | + | tig0010653:59794-59813 | Msa1349090:CDS | 30.0% | |
| AAAATTGCAGAATCAACGTT+GGG | + | tig0010653:59795-59814 | Msa1349090:CDS | 30.0% | |
| CAAATTGAGATTGATACATG+TGG | - | tig0010653:60415-60434 | None:intergenic | 30.0% | |
| !! | CCTCTACAATTGATTTTCTA+GGG | + | tig0010653:60462-60481 | Msa1349090:intron | 30.0% |
| ! | TTTGTTTCAGGTGAAGGTTT+CGG | - | tig0010653:59581-59600 | None:intergenic | 35.0% |
| GCAGAATAGGAGAAGAAAAT+AGG | - | tig0010653:59609-59628 | None:intergenic | 35.0% | |
| !! | TTGATCGGTCTCTTTGATTT+TGG | + | tig0010653:60117-60136 | Msa1349090:intron | 35.0% |
| !! | TGATCGGTCTCTTTGATTTT+GGG | + | tig0010653:60118-60137 | Msa1349090:intron | 35.0% |
| !!! | ATTTTGAAGCAGCAGAAAAC+CGG | + | tig0010653:60276-60295 | Msa1349090:intron | 35.0% |
| ! | TAGCTAGGGTTCTGATAATT+GGG | - | tig0010653:60320-60339 | None:intergenic | 35.0% |
| TGAGATTGATACATGTGGTT+TGG | - | tig0010653:60410-60429 | None:intergenic | 35.0% | |
| GCTAAAATCGCAAAATACGT+AGG | - | tig0010653:60443-60462 | None:intergenic | 35.0% | |
| !! | GCCTCTACAATTGATTTTCT+AGG | + | tig0010653:60461-60480 | Msa1349090:intron | 35.0% |
| CCCTAGAAAATCAATTGTAG+AGG | - | tig0010653:60465-60484 | None:intergenic | 35.0% | |
| ! | TTTGTTTCAGGTGAAGGTTT+CGG | - | tig0010653:59581-59600 | None:intergenic | 35.0% |
| GCAGAATAGGAGAAGAAAAT+AGG | - | tig0010653:59609-59628 | None:intergenic | 35.0% | |
| !! | TTGATCGGTCTCTTTGATTT+TGG | + | tig0010653:60117-60136 | Msa1349090:intron | 35.0% |
| !! | TGATCGGTCTCTTTGATTTT+GGG | + | tig0010653:60118-60137 | Msa1349090:intron | 35.0% |
| !!! | ATTTTGAAGCAGCAGAAAAC+CGG | + | tig0010653:60276-60295 | Msa1349090:intron | 35.0% |
| ! | TAGCTAGGGTTCTGATAATT+GGG | - | tig0010653:60320-60339 | None:intergenic | 35.0% |
| TGAGATTGATACATGTGGTT+TGG | - | tig0010653:60410-60429 | None:intergenic | 35.0% | |
| GCTAAAATCGCAAAATACGT+AGG | - | tig0010653:60443-60462 | None:intergenic | 35.0% | |
| !! | GCCTCTACAATTGATTTTCT+AGG | + | tig0010653:60461-60480 | Msa1349090:intron | 35.0% |
| CCCTAGAAAATCAATTGTAG+AGG | - | tig0010653:60465-60484 | None:intergenic | 35.0% | |
| !! | GGCTAATTTGTTTCAGGTGA+AGG | - | tig0010653:59587-59606 | None:intergenic | 40.0% |
| TCTACGGCATTTGAAGGTTT+CGG | - | tig0010653:59658-59677 | None:intergenic | 40.0% | |
| ACAGATTCTACGGCATTTGA+AGG | - | tig0010653:59664-59683 | None:intergenic | 40.0% | |
| AATCTGTAGAGCGGGAAATT+GGG | + | tig0010653:59677-59696 | Msa1349090:CDS | 40.0% | |
| GGTTCAGATGATGAAGAATC+AGG | + | tig0010653:59720-59739 | Msa1349090:CDS | 40.0% | |
| !! | AGCTAAGGCTGATTTGATGA+TGG | + | tig0010653:59992-60011 | Msa1349090:CDS | 40.0% |
| !! | GCTAAGGCTGATTTGATGAT+GGG | + | tig0010653:59993-60012 | Msa1349090:CDS | 40.0% |
| GCTATGAACAATATTCCGAC+CGG | - | tig0010653:60298-60317 | None:intergenic | 40.0% | |
| ! | GTAGCTAGGGTTCTGATAAT+TGG | - | tig0010653:60321-60340 | None:intergenic | 40.0% |
| CCAAAAATCAACTTCTGGGT+CGG | - | tig0010653:60525-60544 | None:intergenic | 40.0% | |
| !! | GGCTAATTTGTTTCAGGTGA+AGG | - | tig0010653:59587-59606 | None:intergenic | 40.0% |
| TCTACGGCATTTGAAGGTTT+CGG | - | tig0010653:59658-59677 | None:intergenic | 40.0% | |
| ACAGATTCTACGGCATTTGA+AGG | - | tig0010653:59664-59683 | None:intergenic | 40.0% | |
| AATCTGTAGAGCGGGAAATT+GGG | + | tig0010653:59677-59696 | Msa1349090:CDS | 40.0% | |
| GGTTCAGATGATGAAGAATC+AGG | + | tig0010653:59720-59739 | Msa1349090:CDS | 40.0% | |
| !! | AGCTAAGGCTGATTTGATGA+TGG | + | tig0010653:59992-60011 | Msa1349090:CDS | 40.0% |
| !! | GCTAAGGCTGATTTGATGAT+GGG | + | tig0010653:59993-60012 | Msa1349090:CDS | 40.0% |
| GCTATGAACAATATTCCGAC+CGG | - | tig0010653:60298-60317 | None:intergenic | 40.0% | |
| ! | GTAGCTAGGGTTCTGATAAT+TGG | - | tig0010653:60321-60340 | None:intergenic | 40.0% |
| CCAAAAATCAACTTCTGGGT+CGG | - | tig0010653:60525-60544 | None:intergenic | 40.0% | |
| ATGCCGTAGAATCTGTAGAG+CGG | + | tig0010653:59668-59687 | Msa1349090:CDS | 45.0% | |
| TTCCCGCTCTACAGATTCTA+CGG | - | tig0010653:59674-59693 | None:intergenic | 45.0% | |
| GAATCTGTAGAGCGGGAAAT+TGG | + | tig0010653:59676-59695 | Msa1349090:CDS | 45.0% | |
| AGAGAAGAAACGGTTGCTTG+AGG | + | tig0010653:59968-59987 | Msa1349090:CDS | 45.0% | |
| ! | AGAATGTGAGAGTGCGAGAT+AGG | - | tig0010653:60343-60362 | None:intergenic | 45.0% |
| !! | TACATGTGGTTTGGTGAGAG+CGG | - | tig0010653:60401-60420 | None:intergenic | 45.0% |
| TCTTCCGCTCACCCTAAATT+TGG | + | tig0010653:60499-60518 | Msa1349090:intron | 45.0% | |
| TTCTGGGTCGGCCAAATTTA+GGG | - | tig0010653:60513-60532 | None:intergenic | 45.0% | |
| !! | CCGACCCAGAAGTTGATTTT+TGG | + | tig0010653:60522-60541 | Msa1349090:intron | 45.0% |
| ATGCCGTAGAATCTGTAGAG+CGG | + | tig0010653:59668-59687 | Msa1349090:CDS | 45.0% | |
| TTCCCGCTCTACAGATTCTA+CGG | - | tig0010653:59674-59693 | None:intergenic | 45.0% | |
| GAATCTGTAGAGCGGGAAAT+TGG | + | tig0010653:59676-59695 | Msa1349090:CDS | 45.0% | |
| AGAGAAGAAACGGTTGCTTG+AGG | + | tig0010653:59968-59987 | Msa1349090:CDS | 45.0% | |
| ! | AGAATGTGAGAGTGCGAGAT+AGG | - | tig0010653:60343-60362 | None:intergenic | 45.0% |
| !! | TACATGTGGTTTGGTGAGAG+CGG | - | tig0010653:60401-60420 | None:intergenic | 45.0% |
| TCTTCCGCTCACCCTAAATT+TGG | + | tig0010653:60499-60518 | Msa1349090:intron | 45.0% | |
| TTCTGGGTCGGCCAAATTTA+GGG | - | tig0010653:60513-60532 | None:intergenic | 45.0% | |
| !! | CCGACCCAGAAGTTGATTTT+TGG | + | tig0010653:60522-60541 | Msa1349090:intron | 45.0% |
| GAAGGTTTCGGATGAAGAGG+AGG | - | tig0010653:59569-59588 | None:intergenic | 50.0% | |
| GGTGAAGGTTTCGGATGAAG+AGG | - | tig0010653:59572-59591 | None:intergenic | 50.0% | |
| TGCCGTAGAATCTGTAGAGC+GGG | + | tig0010653:59669-59688 | Msa1349090:CDS | 50.0% | |
| ACGGTTGCTTGAGGAAGCTA+AGG | + | tig0010653:59977-59996 | Msa1349090:CDS | 50.0% | |
| TGAAGCAGCAGAAAACCGGT+CGG | + | tig0010653:60280-60299 | Msa1349090:intron | 50.0% | |
| GAGTGCGAGATAGGTAGCTA+GGG | - | tig0010653:60334-60353 | None:intergenic | 50.0% | |
| AGAGTGCGAGATAGGTAGCT+AGG | - | tig0010653:60335-60354 | None:intergenic | 50.0% | |
| ! | TTTAGGGTGAGCGGAAGAGA+GGG | - | tig0010653:60497-60516 | None:intergenic | 50.0% |
| ! | ATTTAGGGTGAGCGGAAGAG+AGG | - | tig0010653:60498-60517 | None:intergenic | 50.0% |
| ! | TCGGCCAAATTTAGGGTGAG+CGG | - | tig0010653:60506-60525 | None:intergenic | 50.0% |
| CTTCTGGGTCGGCCAAATTT+AGG | - | tig0010653:60514-60533 | None:intergenic | 50.0% | |
| GAAGGTTTCGGATGAAGAGG+AGG | - | tig0010653:59569-59588 | None:intergenic | 50.0% | |
| GGTGAAGGTTTCGGATGAAG+AGG | - | tig0010653:59572-59591 | None:intergenic | 50.0% | |
| TGCCGTAGAATCTGTAGAGC+GGG | + | tig0010653:59669-59688 | Msa1349090:CDS | 50.0% | |
| ACGGTTGCTTGAGGAAGCTA+AGG | + | tig0010653:59977-59996 | Msa1349090:CDS | 50.0% | |
| TGAAGCAGCAGAAAACCGGT+CGG | + | tig0010653:60280-60299 | Msa1349090:intron | 50.0% | |
| GAGTGCGAGATAGGTAGCTA+GGG | - | tig0010653:60334-60353 | None:intergenic | 50.0% | |
| AGAGTGCGAGATAGGTAGCT+AGG | - | tig0010653:60335-60354 | None:intergenic | 50.0% | |
| ! | TTTAGGGTGAGCGGAAGAGA+GGG | - | tig0010653:60497-60516 | None:intergenic | 50.0% |
| ! | ATTTAGGGTGAGCGGAAGAG+AGG | - | tig0010653:60498-60517 | None:intergenic | 50.0% |
| ! | TCGGCCAAATTTAGGGTGAG+CGG | - | tig0010653:60506-60525 | None:intergenic | 50.0% |
| CTTCTGGGTCGGCCAAATTT+AGG | - | tig0010653:60514-60533 | None:intergenic | 50.0% | |
| GGTTTCGGATGAAGAGGAGG+CGG | - | tig0010653:59566-59585 | None:intergenic | 55.0% | |
| CGCATCGCGTGATGCAGAAT+AGG | - | tig0010653:59622-59641 | None:intergenic | 55.0% | |
| ATCTGGAGACGACGATGCGA+CGG | - | tig0010653:60372-60391 | None:intergenic | 55.0% | |
| GGTGAGAGCGGAGATAGATC+TGG | - | tig0010653:60389-60408 | None:intergenic | 55.0% | |
| GGTTTCGGATGAAGAGGAGG+CGG | - | tig0010653:59566-59585 | None:intergenic | 55.0% | |
| CGCATCGCGTGATGCAGAAT+AGG | - | tig0010653:59622-59641 | None:intergenic | 55.0% | |
| ATCTGGAGACGACGATGCGA+CGG | - | tig0010653:60372-60391 | None:intergenic | 55.0% | |
| GGTGAGAGCGGAGATAGATC+TGG | - | tig0010653:60389-60408 | None:intergenic | 55.0% | |
| TGAAGAGGAGGCGGTGAAGG+AGG | - | tig0010653:59557-59576 | None:intergenic | 60.0% | |
| GGATGAAGAGGAGGCGGTGA+AGG | - | tig0010653:59560-59579 | None:intergenic | 60.0% | |
| TGAAGAGGAGGCGGTGAAGG+AGG | - | tig0010653:59557-59576 | None:intergenic | 60.0% | |
| GGATGAAGAGGAGGCGGTGA+AGG | - | tig0010653:59560-59579 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010653 | gene | 59550 | 60584 | 59550 | ID=Msa1349090;Name=Msa1349090 |
| tig0010653 | mRNA | 59550 | 60584 | 59550 | ID=Msa1349090-mRNA-1;Parent=Msa1349090;Name=Msa1349090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=87|0.5|0.33|0.66|1|0.66|3|0|112 |
| tig0010653 | exon | 59550 | 59855 | 59550 | ID=Msa1349090-mRNA-1:exon:6679;Parent=Msa1349090-mRNA-1 |
| tig0010653 | exon | 59945 | 60056 | 59945 | ID=Msa1349090-mRNA-1:exon:6680;Parent=Msa1349090-mRNA-1 |
| tig0010653 | exon | 60580 | 60584 | 60580 | ID=Msa1349090-mRNA-1:exon:6681;Parent=Msa1349090-mRNA-1 |
| tig0010653 | five_prime_UTR | 59550 | 59636 | 59550 | ID=Msa1349090-mRNA-1:five_prime_utr;Parent=Msa1349090-mRNA-1 |
| tig0010653 | CDS | 59637 | 59855 | 59637 | ID=Msa1349090-mRNA-1:cds;Parent=Msa1349090-mRNA-1 |
| tig0010653 | CDS | 59945 | 60056 | 59945 | ID=Msa1349090-mRNA-1:cds;Parent=Msa1349090-mRNA-1 |
| tig0010653 | CDS | 60580 | 60584 | 60580 | ID=Msa1349090-mRNA-1:cds;Parent=Msa1349090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
