AlfalfaGEDB | Msa1350460

M. sativa cultivar zhongmu-4 / Msa1350460

KEGG: -
GO: GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350460	XP_003621610.1	96.818	880	28	0	1	880	1	880	0.0	1796

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350460	sp\|Q9FWA6\|PP207_ARATH	54.556	900	377	6	1	874	7	900	0.0	1002

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350460	G7KS24	96.818	880	28	0	1	880	1	880	0.0	1796

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054480	Msa1350460	0.802076	6.660296e-49	-8.615850e-47
Msa0070700	Msa1350460	0.803972	2.700825e-49	-8.615850e-47
Msa0144370	Msa1350460	0.805939	1.047674e-49	-8.615850e-47
Msa0169280	Msa1350460	0.800492	1.405428e-48	-8.615850e-47
Msa0241470	Msa1350460	0.803937	2.746515e-49	-8.615850e-47
Msa0613440	Msa1350460	0.800058	1.721702e-48	-8.615850e-47
Msa0696390	Msa1350460	0.808435	3.101810e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350460	MtrunA17_Chr7g0220551	96.818	880	28	0	1	880	1	880	0.0	1796
Msa1350460	MtrunA17_Chr6g0461581	34.450	836	516	2	41	875	185	989	0.0	552
Msa1350460	MtrunA17_Chr6g0461581	29.542	589	406	4	166	750	77	660	1.98e-84	292
Msa1350460	MtrunA17_Chr6g0461581	27.184	618	363	6	39	641	386	931	2.19e-71	255
Msa1350460	MtrunA17_Chr6g0461581	26.477	491	358	3	262	751	72	560	8.41e-58	215
Msa1350460	MtrunA17_Chr6g0461581	27.027	444	277	6	38	473	486	890	6.65e-51	194
Msa1350460	MtrunA17_Chr1g0209951	34.724	815	501	2	59	872	2	786	2.57e-175	529
Msa1350460	MtrunA17_Chr1g0209951	28.961	587	407	5	190	771	1	582	4.62e-79	274
Msa1350460	MtrunA17_Chr1g0209951	37.755	98	60	1	42	139	492	588	1.56e-12	71.6
Msa1350460	MtrunA17_Chr4g0014491	32.517	898	552	10	11	857	42	936	1.10e-165	506

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350460	AT3G02330.1	54.556	900	377	6	1	874	7	900	0.0	1002
Msa1350460	AT3G09040.1	33.371	890	549	9	12	859	132	1019	1.26e-175	535
Msa1350460	AT3G09040.1	28.797	698	427	10	78	750	52	704	5.78e-93	316
Msa1350460	AT3G09040.4	33.371	890	549	9	12	859	132	1019	1.26e-175	535
Msa1350460	AT3G09040.4	28.797	698	427	10	78	750	52	704	5.78e-93	316
Msa1350460	AT3G09040.2	33.371	890	549	9	12	859	157	1044	4.64e-175	535
Msa1350460	AT3G09040.2	28.797	698	427	10	78	750	77	729	1.07e-92	316
Msa1350460	AT3G09040.3	33.371	890	549	9	12	859	157	1044	4.64e-175	535
Msa1350460	AT3G09040.3	28.797	698	427	10	78	750	77	729	1.07e-92	316
Msa1350460	AT4G39530.1	35.541	740	470	4	108	841	83	821	3.59e-170	515

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Find 178 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTACTGTCATCT+GGG	0.566099	tig0011525:-13128	None:intergenic
AAAATGTTAGTTTCTTTGTT+GGG	0.378392	tig0011525:-13045	None:intergenic
AAACGGGTTTCATCGAAAGT+CGG	0.615550	tig0011525:+13384	Msa1350460:CDS
AAATAAAGGATGCTGTGTCT+TGG	0.539413	tig0011525:+14244	Msa1350460:CDS
AACCGCAGGAATGTGGGGCG+AGG	0.568823	tig0011525:+15307	Msa1350460:CDS
AACCTCGCCCCACATTCCTG+CGG	0.610651	tig0011525:-15309	None:intergenic
AACCTTAAAGCTATAAATCC+TGG	0.378703	tig0011525:+13091	Msa1350460:CDS
AACTATGGTATGGAGGTTCA+TGG	0.409350	tig0011525:+14411	Msa1350460:CDS
AAGAGCGGACAACTGTTTCT+TGG	0.335635	tig0011525:+14547	Msa1350460:CDS
AAGAGTTATTAAGTCTGGTA+TGG	0.451800	tig0011525:+14434	Msa1350460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGTTTGAGAATTGAGAAT+TGG	-	tig0011525:12983-13002	None:intergenic	30.0%
GAAATGGAATGAATTGCATA+AGG	-	tig0011525:13010-13029	None:intergenic	30.0%
AACCTTAAAGCTATAAATCC+TGG	+	tig0011525:13091-13110	Msa1350460:CDS	30.0%
ACCTTAAAGCTATAAATCCT+GGG	+	tig0011525:13092-13111	Msa1350460:CDS	30.0%
TCATGGAACACTATGATATT+TGG	+	tig0011525:13259-13278	Msa1350460:CDS	30.0%
ACTATGATATTTGGTTATGC+TGG	+	tig0011525:13268-13287	Msa1350460:CDS	30.0%
TGAGGGGTTAAAATTGTATA+AGG	+	tig0011525:13702-13721	Msa1350460:CDS	30.0%
GGATATGTTAAAAGAAGGTA+TGG	+	tig0011525:13723-13742	Msa1350460:CDS	30.0%
TAACTCAAATGCTGATAATC+CGG	-	tig0011525:13791-13810	None:intergenic	30.0%
TTAGACATGTATGCAAAATG+TGG	+	tig0011525:14183-14202	Msa1350460:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0011525	gene	12944	15601	12944	ID=Msa1350460;Name=Msa1350460
tig0011525	mRNA	12944	15601	12944	ID=Msa1350460-mRNA-1;Parent=Msa1350460;Name=Msa1350460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|885
tig0011525	exon	12944	15601	12944	ID=Msa1350460-mRNA-1:exon:7404;Parent=Msa1350460-mRNA-1
tig0011525	CDS	12944	15601	12944	ID=Msa1350460-mRNA-1:cds;Parent=Msa1350460-mRNA-1

Gene Sequence

>Msa1350460

ATGTTACATCGTACCTTGTCTCGTGTTCTTCATCTTCCAATTCTCAATTCTCAAACAACACCTCCTTATGCAATTCATTCCATTTCCTCAAACCAAATGAACCCAACAAAGAAACTAACATTTTCCCATATTTTCCAAAAATGTTCAAACCTTAAAGCTATAAATCCTGGGAAACAAGCTCATGCCCAGATGACAGTAACTGGTTTTGTTCCCACTGTTTTTGTTTCAAACTGTTTGCTTCAGTTTTACTGTAAATGTTTGAATTTGAATTACGCGTACAATGTGTTCGATAAAATGCCTCAAAGGGATGTTATTTCATGGAACACTATGATATTTGGTTATGCTGGTGTTGGAAACATGGAGTTTGCGCAGTTTTTGTTTGACTCGATGCCGGAACGAGATGTTGTTTCGTGGAATTCAATGTTGTCGTGTTATTTGCAAAACGGGTTTCATCGAAAGTCGGTTGAAATATTTGCTAAGATGAGGTTATTGGAAATTCAGCATGATTATGCTACTTTTGCGGTTGTTTTGAAAGCGTGTACTGGTATTGAAGACTATGGTTTAGGACTTCAGGTTCATTGCCTTGCGATTAAGATGGGTTTTGATAGTGATGTGGTTACGGGTACTGCTCTAGTAGATATGTATTCGACGTGTAAGAAACTAGATCATGCTTTTAAGATTTTTTGTGAAATGCCGGAAAGGAATTCAGTGTGTTGGAGTGCTGTAATTGCAGGCTATGTTCGAAATGATCGGTTTATTGAGGGGTTAAAATTGTATAAGGATATGTTAAAAGAAGGTATGGGGGTGAGTCAATCAACATTTGCTAGTGCGTTTAGGTCGTGTGCCGGATTATCAGCATTTGAGTTAGGTACGCAGTTGCATGCTTATGCTCTAAAGACTAATTTTGGATACGATAATATAGTAGGAACCGCTACATTAGACATGTATGCTAAGTGTGACAGAATGTTTGATGCTCGAAAGGTATTTAACACATTCCCCAACCCTACTCGGCAATCGCATAATGCCCTTATTGTTGGATATGCACGGCAAGATCAAGGTCTTGAAGCTTTAGAAATTTTTCAGTCTTTACAGAAGTCTTATCTTGACTTCGACGAAATTAGTCTGTCTGGTGCTTTGACTGCATGTTCAACGATCAAAGGCTATTTGGAAGGTATTCAACTGCATGGGTTAGCAGTGAAATGTGGTTTAGATTTCAATATCTGTGTTGCAAATACTATTTTAGACATGTATGCAAAATGTGGAGCATTGATGGAAGCTTGTTTGATATTTGATGACATGGAAATAAAGGATGCTGTGTCTTGGAATGCAATCATTGCCGCTCACGAGCAAAACGAACAAGTAGAAGAAACACTTTCACTTTTTGTTTCAATGCTTCGGTCAACTATGGAACCTGATGATTATACTTTCGGCAGTGTTGTAAAGGCGTGTGCGAGAAAGAAAGCTTTGAACTATGGTATGGAGGTTCATGGAAGAGTTATTAAGTCTGGTATGGGGTTAGACTGGTTTGTCGGAAGCGCCATTATTGATATGTATTGCAAGTGTGGAATGCTAGTGGAGGCAGAAAAAATCCATGAGAGATTGGAAGAGCGGACAACTGTTTCTTGGAATTCAATCATTTCAGGATTCTCTTCGGAGAAGCAAGGCGAAAATGCTCTGAGTTATTTTTCTAAGATGCTACAAGTCGGTGTAATACCTGACAACTTCACGTATGCCACAGTTCTCGACATTTGTGCAAATTTGGCTACTGTCGAACTCGGAAAACAGATTCATGGACAAATTTTAAAGCTACAGTTGCATTCAGATGTGTATATAGCTAGTACTATTGTAGATATGTATTCAAAGTGTGGAAATATGCAGGATTCTCGTGTAATGTTTGAGAAGGCACCTAAGCGGGATTATGTGACTTGGAGTGCCATGATTTGTGCATATGCATACCATGGACTTGGAGAAGATGCAATTAAATTATTTGAGGAGATGCAGCTTCATAATGTGAAACCAAATCATACGATTTTTATTTCGGTCCTCAGAGCTTGTGCGCATATGGGTTTTGTAGACAAAGGGCTACATTACTTCCGGGAAATGCAAAGTCACTACGGTTTAGATCCCCAAGTGGAACATTATTCTTGCATGGTAGATCTACTTGGTAGGTCAGGCCAAGTAAACGAAGCCTTAGAGCTTATTGAAAGCATGCCTTTTGAAGCTGATGATGTTATATGGAGAACTTTACTCGGTATTTGCAAGTTGCAAGGGAATGTTGAGGTTGCAGAAAAAGCTGCTAATTCTTTATTGCAGTTGGACCCTCAAGATTCTTCTGCTTACGTTCTTTTGTCGAATGTATATGGAACCGCAGGAATGTGGGGCGAGGTTGCAAAAATAAGAAGTTTAATGAAGAATTATAAGTTAAAGAAGGAGCCAGGATGTAGCTGGATTCAGGTAAGGGACGAGGTGCATGCATTTCTTGTTGGAGACAAGGCACATCCAAGATCTGAGGAGATATATCAACAAACTCATGTACTTGTGGATGAGATGAAGTGGGACGGATATGTTCCTGAAATCGATGGTTTCCTTCTTGATGAGGAAGTGGAAGAACAAGATTCTTACGAGGGACATAAAATCACCGCGTGTAGTGTGAGATAA

Protein sequence

>Msa1350460

MLHRTLSRVLHLPILNSQTTPPYAIHSISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQMTVTGFVPTVFVSNCLLQFYCKCLNLNYAYNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSVEIFAKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIKMGFDSDVVTGTALVDMYSTCKKLDHAFKIFCEMPERNSVCWSAVIAGYVRNDRFIEGLKLYKDMLKEGMGVSQSTFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMFDARKVFNTFPNPTRQSHNALIVGYARQDQGLEALEIFQSLQKSYLDFDEISLSGALTACSTIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEQVEETLSLFVSMLRSTMEPDDYTFGSVVKACARKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSKMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRVMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLHNVKPNHTIFISVLRACAHMGFVDKGLHYFREMQSHYGLDPQVEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICKLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYGTAGMWGEVAKIRSLMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTHVLVDEMKWDGYVPEIDGFLLDEEVEEQDSYEGHKITACSVR*