AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352040 MtrunA17_Chr7g0254331 92.135 801 45 3 1 785 1 799 0.0 1464
Msa1352040 MtrunA17_Chr6g0478341 30.514 331 158 8 27 310 78 383 1.06e-34 139
Msa1352040 MtrunA17_Chr6g0478341 51.667 60 27 1 237 296 385 442 6.61e-16 81.6
Msa1352040 MtrunA17_Chr6g0478341 44.286 70 27 1 242 299 421 490 6.75e-13 72.0
Msa1352040 MtrunA17_Chr7g0272741 32.509 283 131 8 78 301 126 407 5.16e-34 140
Msa1352040 MtrunA17_Chr1g0161121 25.159 314 156 7 67 301 51 364 9.24e-30 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352040 AT5G17790.1 44.768 755 264 23 81 777 93 752 0.0 545
Msa1352040 AT1G55040.1 35.443 237 110 6 110 306 204 437 5.14e-34 140
Msa1352040 AT1G70650.1 25.574 305 136 8 78 300 44 339 2.88e-25 110
Msa1352040 AT1G48570.1 29.326 341 148 12 69 319 52 389 8.10e-25 108
Msa1352040 AT1G48570.1 56.716 67 29 0 237 303 373 439 2.06e-19 92.4
Msa1352040 AT1G70650.2 25.574 305 136 8 78 300 44 339 9.60e-25 110

Find 225 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAGAAATATCCTTAATT+TGG 0.135919 tig0012398:-100143 None:intergenic
TTACGCATTGGCATCATTTC+AGG 0.187358 tig0012398:-99592 None:intergenic
CCCAGATTACTTTGCCAAAA+AGG 0.192927 tig0012398:+99738 Msa1352040:CDS
TTCCTTAACGGCATTATTTC+CGG 0.203024 tig0012398:-99079 None:intergenic
TAGATTATAATTCCATTTCT+AGG 0.208659 tig0012398:-100598 None:intergenic
CCGTCGTGTTGCCCAAATTA+AGG 0.248127 tig0012398:+100131 Msa1352040:CDS
ATTTGTTGTTAGCAAGAAAA+AGG 0.255921 tig0012398:+99627 Msa1352040:CDS
GGACTCTGATAAAGCAAATA+TGG 0.287841 tig0012398:+98194 Msa1352040:CDS
GCTTGAAAAGTTCACCAAAT+AGG 0.289027 tig0012398:-98320 None:intergenic
GATATTGCACTTGTTATATC+TGG 0.297268 tig0012398:-99556 None:intergenic
CTATTAACTCCTTTCCTTAA+CGG 0.298170 tig0012398:-99091 None:intergenic
TTTCCATCATATGCCAGTTC+TGG 0.308128 tig0012398:+99409 Msa1352040:CDS
TCCTCCATCAGAAACCTATT+TGG 0.311441 tig0012398:+98306 Msa1352040:CDS
GATAGAAAACATGAAAATAT+TGG 0.313880 tig0012398:-100570 None:intergenic
ATCTTGGTCCTAGGAAAATA+TGG 0.321905 tig0012398:+95346 Msa1352040:five_prime_UTR
ATTGATTCAATTCAATATCT+TGG 0.326668 tig0012398:+95330 Msa1352040:five_prime_UTR
TGTTGTTCCCTTTCACATCT+TGG 0.329907 tig0012398:-99369 None:intergenic
GCGGCCTGGACAAATATCTT+TGG 0.332575 tig0012398:+98883 Msa1352040:CDS
GAAGTTGAGGACTATAAAAC+TGG 0.335316 tig0012398:+99202 Msa1352040:CDS
GAATTATAATCTAGTTTCTA+TGG 0.338478 tig0012398:+100608 Msa1352040:three_prime_UTR
TTCTATCTTGATCCTAGAAA+TGG 0.345139 tig0012398:+100586 Msa1352040:three_prime_UTR
CTCAGAAATATCCTTAATTT+GGG 0.345174 tig0012398:-100142 None:intergenic
TTCTTCACTTCATCCTCCTC+TGG 0.353197 tig0012398:+95302 Msa1352040:five_prime_UTR
ATCTGATCAGAAGGAGGTCC+TGG 0.356751 tig0012398:-99874 None:intergenic
TTGAAATGAAAAGGGGTGAT+TGG 0.359169 tig0012398:+98439 Msa1352040:CDS
CCCTTTGATTGATTTCATAT+TGG 0.360934 tig0012398:+100499 Msa1352040:three_prime_UTR
GGAGGTCCTGGACTCTGTTC+AGG 0.361319 tig0012398:-99862 None:intergenic
CAATAATGCCTATGCGTAAA+GGG 0.362210 tig0012398:+100196 Msa1352040:CDS
GTGAAGAAGCAAGGCCAAAA+AGG 0.372468 tig0012398:+98693 Msa1352040:CDS
TTCCGGAAATAATGCCGTTA+AGG 0.373924 tig0012398:+99077 Msa1352040:CDS
GATACTCTGGACGACATTCT+AGG 0.385372 tig0012398:+99244 Msa1352040:CDS
CCTCTCTGCCTTTGCCTCCT+CGG 0.388207 tig0012398:-100103 None:intergenic
GATGAACTCTCGGTCAGATT+TGG 0.390607 tig0012398:-99982 None:intergenic
CGGCCTGGACAAATATCTTT+GGG 0.398174 tig0012398:+98884 Msa1352040:CDS
GACAAAACATTGAAATGAAA+AGG 0.402732 tig0012398:+98430 Msa1352040:CDS
CTATGGTCGACTTGTTAAGT+AGG 0.406316 tig0012398:+100625 Msa1352040:three_prime_UTR
ACAGGATCTGAGCTCACAAC+TGG 0.410741 tig0012398:-100297 None:intergenic
CCCTGGATGTGATGTGGTAT+TGG 0.414060 tig0012398:-98912 None:intergenic
GACATTCTAGGTCGTTCAAC+TGG 0.418769 tig0012398:+99256 Msa1352040:CDS
GGAGGAAGAAGATGAACCTT+GGG 0.419366 tig0012398:-95445 None:intergenic
GTAAAACAAGTGTGGTCATT+TGG 0.420650 tig0012398:-95242 None:intergenic
GAGATAGACCTAACCTTCTC+AGG 0.427165 tig0012398:+95789 Msa1352040:CDS
TTTACCAGCAATTATACAAA+AGG 0.429619 tig0012398:+100380 Msa1352040:three_prime_UTR
TGCACTGAATCAAAAGAGTT+GGG 0.431070 tig0012398:-98363 None:intergenic
GTTTAGAGGGATCAGCGGTC+AGG 0.435485 tig0012398:+100058 Msa1352040:CDS
GGGATCAGCGGTCAGGGAAC+CGG 0.437067 tig0012398:+100065 Msa1352040:CDS
GGTCAGGGAACCGGATCCTT+TGG 0.443328 tig0012398:+100074 Msa1352040:CDS
GCTCAATACAAGAGAAGCTT+GGG 0.444015 tig0012398:+99163 Msa1352040:CDS
GGAGATGTGTGAGAGAAATC+TGG 0.445834 tig0012398:-95678 None:intergenic
CCAATATGAAATCAATCAAA+GGG 0.447824 tig0012398:-100499 None:intergenic
TTGCACTGAATCAAAAGAGT+TGG 0.448066 tig0012398:-98364 None:intergenic
CAATTCAATATCTTGGTCCT+AGG 0.448183 tig0012398:+95337 Msa1352040:five_prime_UTR
GAAACAAACCTGAGAAGGTT+AGG 0.449010 tig0012398:-95797 None:intergenic
GTGGAAATGAGAGGAGAAAG+AGG 0.449844 tig0012398:-95492 None:intergenic
GATTGATTTCATATTGGAGA+TGG 0.452218 tig0012398:+100505 Msa1352040:three_prime_UTR
ACAAAACATTGAAATGAAAA+GGG 0.453499 tig0012398:+98431 Msa1352040:CDS
ACTGTCAGTGTCACCAGAAC+TGG 0.456993 tig0012398:-99422 None:intergenic
AAGAAAAGAGAGTGCGGTGG+TGG 0.457611 tig0012398:-95511 None:intergenic
TGATCTATCTCAGCCTCGTC+CGG 0.461357 tig0012398:+95400 Msa1352040:five_prime_UTR
CGGTGTGATTGCAAGCGGCC+TGG 0.461676 tig0012398:+98869 Msa1352040:CDS
GAGGCTTTGAGTTTGAGTTT+AGG 0.462466 tig0012398:-95575 None:intergenic
AGAAAGAGGGAGAGAGGAGA+CGG 0.463077 tig0012398:-95478 None:intergenic
AACTGGCATATGATGGAAAA+GGG 0.463133 tig0012398:-99405 None:intergenic
GGGAGGAAAACCATCGGCGG+GGG 0.465893 tig0012398:-95717 None:intergenic
GAGAGGAGAAAGAGGGAGAG+AGG 0.466377 tig0012398:-95484 None:intergenic
GAACTGGCATATGATGGAAA+AGG 0.466654 tig0012398:-99406 None:intergenic
TGGATGGTGGGTTCCACTGA+GGG 0.467082 tig0012398:-95642 None:intergenic
ATTGAAGGAAAATCTTCGTC+TGG 0.470173 tig0012398:-100177 None:intergenic
GAAGATGAACCTTGGGGAGG+CGG 0.470465 tig0012398:-95438 None:intergenic
TCAATAATGCCTATGCGTAA+AGG 0.470741 tig0012398:+100195 Msa1352040:CDS
AGTGTTGGAACAGAATGGTC+AGG 0.471195 tig0012398:+100030 Msa1352040:CDS
ATTGATTTCATATTGGAGAT+GGG 0.474580 tig0012398:+100506 Msa1352040:three_prime_UTR
ACCATTCTGTTCCAACACTC+TGG 0.475255 tig0012398:-100026 None:intergenic
TACGCATTGGCATCATTTCA+GGG 0.476436 tig0012398:-99591 None:intergenic
GAGGGGAGATTGTGAAGGTT+GGG 0.478243 tig0012398:-95624 None:intergenic
TCACAACTGGAAGATTTCTT+CGG 0.480004 tig0012398:-100284 None:intergenic
ACCAATACCACATCACATCC+AGG 0.486464 tig0012398:+98911 Msa1352040:CDS
TGCTCAATACAAGAGAAGCT+TGG 0.486677 tig0012398:+99162 Msa1352040:CDS
GGCAACTGACTGGAGGAGAA+TGG 0.487351 tig0012398:+98714 Msa1352040:CDS
ACCAAATAGGTTTCTGATGG+AGG 0.488991 tig0012398:-98307 None:intergenic
GTTTATGTTCTCCGACTCGC+AGG 0.489402 tig0012398:+95946 Msa1352040:CDS
TTCAAGTGAAAATGTCATCA+AGG 0.490105 tig0012398:+99465 Msa1352040:CDS
TTCAGATATTGATGCTAGGT+TGG 0.491453 tig0012398:+98961 Msa1352040:CDS
GCTTCTCTTGTATTGAGCAT+TGG 0.492874 tig0012398:-99158 None:intergenic
GCCTGTGGCAATTCGCCGGT+GGG 0.493882 tig0012398:-95737 None:intergenic
TCCAATATGAAATCAATCAA+AGG 0.495744 tig0012398:-100500 None:intergenic
GATCAGAGACGTTGCCGTTG+TGG 0.495844 tig0012398:+95907 Msa1352040:CDS
CACATTTCCAAGATGTGAAA+GGG 0.498595 tig0012398:+99362 Msa1352040:CDS
TTCACCAAATAGGTTTCTGA+TGG 0.498647 tig0012398:-98310 None:intergenic
AAGCAGTGGAAATTCAAGTC+AGG 0.499382 tig0012398:+99939 Msa1352040:CDS
AGCCAAGTCTCGTGATACTC+TGG 0.500292 tig0012398:+99231 Msa1352040:CDS
GCAACTGACTGGAGGAGAAT+GGG 0.501796 tig0012398:+98715 Msa1352040:CDS
TTCAGCCTGTGGCAATTCGC+CGG 0.503179 tig0012398:-95741 None:intergenic
GCCAAACGTCTCTTATATGC+TGG 0.505054 tig0012398:-99667 None:intergenic
GAATCAAAAGAGTTGGGTCC+AGG 0.510866 tig0012398:-98357 None:intergenic
AAAACTCTGGCCATGGATGG+TGG 0.511046 tig0012398:-95655 None:intergenic
CTTATATGCTGGTGTTGTCA+AGG 0.513833 tig0012398:-99656 None:intergenic
TGCGAGTCGGAGAACATAAA+CGG 0.516634 tig0012398:-95944 None:intergenic
CGGAGGAAGAAGATGAACCT+TGG 0.517525 tig0012398:-95446 None:intergenic
CTCTCACACATCTCCTCCGC+CGG 0.517890 tig0012398:+95686 Msa1352040:CDS
CAATATCTGAAGTATTAGAA+TGG 0.519472 tig0012398:-98949 None:intergenic
GTGGGAGGAAAACCATCGGC+GGG 0.523503 tig0012398:-95719 None:intergenic
AGCCTGTGGCAATTCGCCGG+TGG 0.523704 tig0012398:-95738 None:intergenic
GAACCCAAAGATATTTGTCC+AGG 0.524396 tig0012398:-98887 None:intergenic
TGAGGGGAGATTGTGAAGGT+TGG 0.524706 tig0012398:-95625 None:intergenic
TTATTTATCTATCTTTGTTG+AGG 0.527136 tig0012398:+100475 Msa1352040:three_prime_UTR
TTACGCATAGGCATTATTGA+AGG 0.527364 tig0012398:-100192 None:intergenic
TCACCAGAACTGGCATATGA+TGG 0.530430 tig0012398:-99412 None:intergenic
ATGGATGGTGGGTTCCACTG+AGG 0.530473 tig0012398:-95643 None:intergenic
ACTTATGCGGCTTCAAGCAG+TGG 0.530927 tig0012398:+99925 Msa1352040:CDS
AGTGCGGTGGTGGAAATGAG+AGG 0.532561 tig0012398:-95501 None:intergenic
GGAGGAATGTAGCTTGCTTA+CGG 0.533335 tig0012398:+98849 Msa1352040:CDS
CGTTTGGCCATGGAGCAATC+TGG 0.534177 tig0012398:+99682 Msa1352040:CDS
TGGTTTACATTTCCATACCC+TGG 0.534908 tig0012398:-98929 None:intergenic
ACCAGCATATAAGAGACGTT+TGG 0.535648 tig0012398:+99666 Msa1352040:CDS
ACCACATCACATCCAGGGTA+TGG 0.536955 tig0012398:+98917 Msa1352040:CDS
ATAGATTTGTTGTAAGCATG+AGG 0.537578 tig0012398:+99110 Msa1352040:CDS
TAACGACGCTCCCGAAGTTG+AGG 0.538314 tig0012398:+99189 Msa1352040:CDS
ATTTGCTTTATCAGAGTCCA+AGG 0.538585 tig0012398:-98190 None:intergenic
ATGGTCAGGGAAAAGTTTAG+AGG 0.539489 tig0012398:+100044 Msa1352040:CDS
GTGTGGTCATTTGGAAGTCA+AGG 0.542362 tig0012398:-95233 None:intergenic
AGATATTGATGCTAGGTTGG+TGG 0.542575 tig0012398:+98964 Msa1352040:CDS
TCGGACATATCCAAAGGATC+CGG 0.542933 tig0012398:-100084 None:intergenic
GGGGTGATTGGATTTGCCTA+AGG 0.543193 tig0012398:+98451 Msa1352040:CDS
TGGAAATGAGAGGAGAAAGA+GGG 0.544818 tig0012398:-95491 None:intergenic
GATGTATTGCTAGCAATTGA+CGG 0.549547 tig0012398:-99340 None:intergenic
GGATATGTCCGAGGAGGCAA+AGG 0.549802 tig0012398:+100095 Msa1352040:CDS
TCATATTGGTTCTACTTATG+CGG 0.551263 tig0012398:+99912 Msa1352040:CDS
GAAATAATGCCGTTAAGGAA+AGG 0.552070 tig0012398:+99082 Msa1352040:CDS
ATGCTGGTGTTGTCAAGGAC+CGG 0.555358 tig0012398:-99651 None:intergenic
TCAGTGGAACCCACCATCCA+TGG 0.555921 tig0012398:+95645 Msa1352040:CDS
TTACTTGAGATCTGATCAGA+AGG 0.556039 tig0012398:-99883 None:intergenic
AAGCATGAGGAAAACTCCAC+TGG 0.556439 tig0012398:+99123 Msa1352040:CDS
ATACTTCAGATATTGATGCT+AGG 0.557119 tig0012398:+98957 Msa1352040:CDS
GGTGGGAGGAAAACCATCGG+CGG 0.557256 tig0012398:-95720 None:intergenic
TTTAGAGGGATCAGCGGTCA+GGG 0.557816 tig0012398:+100059 Msa1352040:CDS
AATCTGGAAAACTCTGGCCA+TGG 0.559800 tig0012398:-95662 None:intergenic
TCACATTTCCAAGATGTGAA+AGG 0.564003 tig0012398:+99361 Msa1352040:CDS
GAGAGAGGAGACGGATATTG+TGG 0.564727 tig0012398:-95469 None:intergenic
TGGGCGGCGCCGCCTCCCCA+AGG 0.564760 tig0012398:+95429 Msa1352040:CDS
GGAGACGGATATTGTGGCGG+AGG 0.564843 tig0012398:-95463 None:intergenic
AAGCTGAGTTATAGTACACC+TGG 0.564865 tig0012398:+98339 Msa1352040:CDS
GAAATGATGCCAATGCGTAA+AGG 0.565143 tig0012398:+99595 Msa1352040:CDS
TCTGAAGGGACTGAGATGTC+AGG 0.566228 tig0012398:+99823 Msa1352040:CDS
GTCTTGAATGTGAAGAAGCA+AGG 0.567791 tig0012398:+98684 Msa1352040:CDS
ACAAAAGGAAAATGAAGATG+TGG 0.568246 tig0012398:+100395 Msa1352040:three_prime_UTR
GAATCATCCTCAGTATCTGA+AGG 0.568311 tig0012398:+99808 Msa1352040:CDS
CTGTTCACCCCTTTACGCAT+AGG 0.569750 tig0012398:-100204 None:intergenic
AGCGGAAAACACCACTGGAA+AGG 0.571776 tig0012398:+100241 Msa1352040:CDS
ATTGAATCAATTTAAACCAG+AGG 0.573265 tig0012398:-95318 None:intergenic
TTGATTTCATATTGGAGATG+GGG 0.574357 tig0012398:+100507 Msa1352040:three_prime_UTR
GTTCTCAGATGCTGAACCTG+TGG 0.575630 tig0012398:-100004 None:intergenic
GAGCAAGCGGAAAACACCAC+TGG 0.575777 tig0012398:+100236 Msa1352040:CDS
ACCAGAGTGTTGGAACAGAA+TGG 0.576410 tig0012398:+100025 Msa1352040:CDS
GGCACGACGTTGGTTTAACA+AGG 0.578881 tig0012398:+99000 Msa1352040:CDS
GCATCTGAGAACCAGAGTGT+TGG 0.579809 tig0012398:+100015 Msa1352040:CDS
AAACTCTGGCCATGGATGGT+GGG 0.580607 tig0012398:-95654 None:intergenic
TGGAAAACTCTGGCCATGGA+TGG 0.581090 tig0012398:-95658 None:intergenic
TGGTCAGGGAAAAGTTTAGA+GGG 0.581187 tig0012398:+100045 Msa1352040:CDS
GCTAGACCTGAACAGAGTCC+AGG 0.581585 tig0012398:+99856 Msa1352040:CDS
GAGAGAAATCTGGAAAACTC+TGG 0.581714 tig0012398:-95668 None:intergenic
TGTGGCAATTCGCCGGTGGG+AGG 0.582485 tig0012398:-95734 None:intergenic
GAGTTATGCAAGTAGCTGCT+TGG 0.582628 tig0012398:+98239 Msa1352040:CDS
TTGGTCAACCTCCTCTCCAG+TGG 0.584034 tig0012398:-99139 None:intergenic
GAATCAATTTAAACCAGAGG+AGG 0.587340 tig0012398:-95315 None:intergenic
TGGATGTGATGTGGTATTGG+TGG 0.590402 tig0012398:-98909 None:intergenic
GAATTTGTTCCATCTGCCTG+TGG 0.595417 tig0012398:-99766 None:intergenic
ATATAAGAGACGTTTGGCCA+TGG 0.595895 tig0012398:+99672 Msa1352040:CDS
ATGGAACAAATTCAACAGAC+AGG 0.596508 tig0012398:+99776 Msa1352040:CDS
GTTGGTGGCTAATGAAGAGA+AGG 0.597342 tig0012398:+98979 Msa1352040:CDS
ACAGATTCGTTGTGAGCAAG+CGG 0.598905 tig0012398:+100223 Msa1352040:CDS
TGGGAGGAAAACCATCGGCG+GGG 0.599451 tig0012398:-95718 None:intergenic
TCAGTGCAAAATCAAATACC+TGG 0.600487 tig0012398:+98378 Msa1352040:CDS
CCTGTCAAGAGAGAAAATGA+AGG 0.601602 tig0012398:+100315 Msa1352040:CDS
AAACAGAAACAAACCTGAGA+AGG 0.601875 tig0012398:-95802 None:intergenic
TGAACCTGTGGATGAACTCT+CGG 0.602609 tig0012398:-99992 None:intergenic
CATTTCAGGGAAATCATCAT+CGG 0.606138 tig0012398:-99578 None:intergenic
CCTTAATTTGGGCAACACGA+CGG 0.610893 tig0012398:-100131 None:intergenic
GCCTCCTCGGACATATCCAA+AGG 0.611688 tig0012398:-100090 None:intergenic
GTCCAGAGTATCACGAGACT+TGG 0.612050 tig0012398:-99233 None:intergenic
CTCAGTCCCTTCAGATACTG+AGG 0.612291 tig0012398:-99815 None:intergenic
TTTGAGCGTACAATGCCTCC+CGG 0.614647 tig0012398:+98408 Msa1352040:CDS
GCTGCTTGGTCTCTTCAGAA+AGG 0.615519 tig0012398:+98253 Msa1352040:CDS
GTGTTGGAACAGAATGGTCA+GGG 0.616106 tig0012398:+100031 Msa1352040:CDS
GCTTACGGTGTGATTGCAAG+CGG 0.623530 tig0012398:+98864 Msa1352040:CDS
TGAGGAAAACTCCACTGGAG+AGG 0.625101 tig0012398:+99128 Msa1352040:CDS
TAGATGGTTTAGAAAGATTG+CGG 0.625827 tig0012398:+99519 Msa1352040:CDS
AGTATTACCAGATTGCTCCA+TGG 0.627499 tig0012398:-99689 None:intergenic
CCACTGAGGGGAGATTGTGA+AGG 0.627857 tig0012398:-95629 None:intergenic
GCCGGTGGGAGGAAAACCAT+CGG 0.628392 tig0012398:-95723 None:intergenic
GATGTCAATCTCCTTTCCAG+TGG 0.628941 tig0012398:-100252 None:intergenic
CTTGAGATCTGATCAGAAGG+AGG 0.633242 tig0012398:-99880 None:intergenic
AAGTTGAGGACTATAAAACT+GGG 0.634387 tig0012398:+99203 Msa1352040:CDS
TACTGAGGATGATTCAACAC+TGG 0.638239 tig0012398:-99800 None:intergenic
GGAAAACTCCACTGGAGAGG+AGG 0.638678 tig0012398:+99131 Msa1352040:CDS
AGGAGGCAAAGGCAGAGAGG+TGG 0.639211 tig0012398:+100106 Msa1352040:CDS
AATAATGCCTATGCGTAAAG+GGG 0.640140 tig0012398:+100197 Msa1352040:CDS
GTTGCCGTTGTGGTTGAACA+TGG 0.640291 tig0012398:+95917 Msa1352040:CDS
AATCATCCTCAGTATCTGAA+GGG 0.641884 tig0012398:+99809 Msa1352040:CDS
ATGAAGAGAAGGCACGACGT+TGG 0.642250 tig0012398:+98990 Msa1352040:CDS
CAAAACATTGAAATGAAAAG+GGG 0.644747 tig0012398:+98432 Msa1352040:CDS
TTTATAGCGTAAAACAAGTG+TGG 0.646819 tig0012398:-95250 None:intergenic
GGATGGTGGGTTCCACTGAG+GGG 0.647596 tig0012398:-95641 None:intergenic
GGTGCTGAACAAAATTTCAG+TGG 0.648311 tig0012398:+99307 Msa1352040:CDS
ACTGGCATATGATGGAAAAG+GGG 0.651966 tig0012398:-99404 None:intergenic
CCAATACCACATCACATCCA+GGG 0.653487 tig0012398:+98912 Msa1352040:CDS
CCTTCACAATCTCCCCTCAG+TGG 0.654918 tig0012398:+95629 Msa1352040:CDS
CCGAGGAGGCAAAGGCAGAG+AGG 0.655109 tig0012398:+100103 Msa1352040:CDS
GGAAACAGAATCCTGCGAGT+CGG 0.660654 tig0012398:-95957 None:intergenic
TCCATACCCTGGATGTGATG+TGG 0.662623 tig0012398:-98918 None:intergenic
TCCTTTGGATATGTCCGAGG+AGG 0.663246 tig0012398:+100089 Msa1352040:CDS
CTGACCGAGAGTTCATCCAC+AGG 0.667426 tig0012398:+99988 Msa1352040:CDS
CAAGCACTGACTTCAGCCTG+TGG 0.668059 tig0012398:-95752 None:intergenic
GTACGCTCAAATCTACCACC+AGG 0.671074 tig0012398:-98396 None:intergenic
AGAGGAGACGGATATTGTGG+CGG 0.674499 tig0012398:-95466 None:intergenic
GGATCCTTTGGATATGTCCG+AGG 0.677529 tig0012398:+100086 Msa1352040:CDS
GTGCAAAATCAAATACCTGG+TGG 0.682847 tig0012398:+98381 Msa1352040:CDS
CAATATGAAATCAATCAAAG+GGG 0.687402 tig0012398:-100498 None:intergenic
GAAGAAGATGAACCTTGGGG+AGG 0.689234 tig0012398:-95441 None:intergenic
AGTACCATGTTCAACCACAA+CGG 0.691064 tig0012398:-95921 None:intergenic
GAAAAGTTTAGAGGGATCAG+CGG 0.701326 tig0012398:+100053 Msa1352040:CDS
TGAATGAAGAAAAGAGAGTG+CGG 0.704407 tig0012398:-95517 None:intergenic
GAGGAAGAAGATGAACCTTG+GGG 0.727162 tig0012398:-95444 None:intergenic
ATGAAGAAAAGAGAGTGCGG+TGG 0.745588 tig0012398:-95514 None:intergenic
AGTTGAGGACTATAAAACTG+GGG 0.750422 tig0012398:+99204 Msa1352040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTAATTCATTTTAATAT+AGG + tig0012398:95876-95895 Msa1352040:intron 10.0%
!! AATATAAAATAAAGTTGAAT+TGG + tig0012398:96118-96137 Msa1352040:intron 10.0%
!! AAACAAAAAAATAAATAGAA+GGG - tig0012398:96689-96708 None:intergenic 10.0%
!!! AACTATTTGTTTTTTTTTAA+TGG + tig0012398:97177-97196 Msa1352040:intron 10.0%
!! AACAAAAAAATAAATAGAAG+GGG - tig0012398:96688-96707 None:intergenic 15.0%
!! CAAACAAAAAAATAAATAGA+AGG - tig0012398:96690-96709 None:intergenic 15.0%
!! AATAAATTAATAGAAGCTTA+AGG - tig0012398:96820-96839 None:intergenic 15.0%
!! CAATAAACAATAACAATAAT+AGG - tig0012398:97840-97859 None:intergenic 15.0%
!! AGAAATATGAATTTAAGAAA+AGG - tig0012398:97970-97989 None:intergenic 15.0%
!!! TCTTAAATTCATATTTCTAT+TGG + tig0012398:97972-97991 Msa1352040:intron 15.0%
!!! CTTAAATTCATATTTCTATT+GGG + tig0012398:97973-97992 Msa1352040:intron 15.0%
!!! ATTGATTCAATTCAATATCT+TGG + tig0012398:95330-95349 Msa1352040:five_prime_UTR 20.0%
!! TGAATTAGAATTAAATCGAA+TGG - tig0012398:95867-95886 None:intergenic 20.0%
!! ACATTTATGATAGAACATTA+TGG + tig0012398:96358-96377 Msa1352040:intron 20.0%
!!! AAAAGTATGATCTTTCATAT+TGG + tig0012398:96791-96810 Msa1352040:intron 20.0%
!! TAATTATTCTATAGTTCAGT+TGG + tig0012398:97153-97172 Msa1352040:intron 20.0%
!! TCAGGAAAAAATAATAAAGA+TGG + tig0012398:97350-97369 Msa1352040:intron 20.0%
!! ATATCATGAACAAATATAGT+AGG - tig0012398:97387-97406 None:intergenic 20.0%
!! CTAAAATGAAATTTACATAG+TGG - tig0012398:97443-97462 None:intergenic 20.0%
!!! ATGTAAATTTCATTTTAGTC+TGG + tig0012398:97445-97464 Msa1352040:intron 20.0%
!!! TTTTTTTTTCTAACAAAACG+TGG + tig0012398:97763-97782 Msa1352040:intron 20.0%
!!! AAGCAATTTAAAATATCAGT+TGG + tig0012398:97920-97939 Msa1352040:intron 20.0%
!! TTTAAAGAAATGAAGAAAAG+TGG + tig0012398:97996-98015 Msa1352040:intron 20.0%
!! ACAAAACATTGAAATGAAAA+GGG + tig0012398:98431-98450 Msa1352040:CDS 20.0%
!!! ATGATTTTAGAAAATACCTT+AGG - tig0012398:98470-98489 None:intergenic 20.0%
!! ACATAGTTTATTATTTCACT+GGG - tig0012398:98514-98533 None:intergenic 20.0%
!! AACATAGTTTATTATTTCAC+TGG - tig0012398:98515-98534 None:intergenic 20.0%
!! TATGTTATATTGTGTAATAC+TGG + tig0012398:98529-98548 Msa1352040:intron 20.0%
!! AAAATGAAAATCCTGTTAAT+TGG - tig0012398:98805-98824 None:intergenic 20.0%
!! TCAAGTAAAAACAATCATAT+TGG + tig0012398:99898-99917 Msa1352040:CDS 20.0%
!! TTATTTATCTATCTTTGTTG+AGG + tig0012398:100475-100494 Msa1352040:three_prime_UTR 20.0%
!! GATAGAAAACATGAAAATAT+TGG - tig0012398:100573-100592 None:intergenic 20.0%
!! TAGATTATAATTCCATTTCT+AGG - tig0012398:100601-100620 None:intergenic 20.0%
!!! GAATTATAATCTAGTTTCTA+TGG + tig0012398:100608-100627 Msa1352040:three_prime_UTR 20.0%
!!! ACTTGTTTTACGCTATAAAT+AGG + tig0012398:95254-95273 Msa1352040:five_prime_UTR 25.0%
! ATTGAATCAATTTAAACCAG+AGG - tig0012398:95321-95340 None:intergenic 25.0%
! ATAAACAGAGGAATGAAATT+TGG - tig0012398:95828-95847 None:intergenic 25.0%
!!! CTTTTTCATGCTTTATATTC+TGG + tig0012398:96026-96045 Msa1352040:intron 25.0%
! AAACACTTACGAAACTATTT+GGG - tig0012398:96220-96239 None:intergenic 25.0%
! TAAACACTTACGAAACTATT+TGG - tig0012398:96221-96240 None:intergenic 25.0%
! CAAGTTCGTACATTTAAAAA+CGG - tig0012398:96327-96346 None:intergenic 25.0%
! TTTATGATAGAACATTATGG+CGG + tig0012398:96361-96380 Msa1352040:intron 25.0%
! CATAAATCATTATCCTTAGT+AGG + tig0012398:96634-96653 Msa1352040:intron 25.0%
! AAACAAATAGAATTGATCCA+GGG + tig0012398:96710-96729 Msa1352040:intron 25.0%
!!! TTTTTTGCAGAATTCCAAAA+TGG - tig0012398:96888-96907 None:intergenic 25.0%
!!! TCTCTCTAGTTATTGTTTTA+TGG + tig0012398:96952-96971 Msa1352040:intron 25.0%
!! CTGGAGATAAGATTTTATAT+AGG + tig0012398:97041-97060 Msa1352040:intron 25.0%
!! TTTTATATAGGAGAGAAAGA+AGG + tig0012398:97053-97072 Msa1352040:intron 25.0%
! TTTATATAGGAGAGAAAGAA+GGG + tig0012398:97054-97073 Msa1352040:intron 25.0%
! TTAATATTTAGTCCTTCGTT+CGG + tig0012398:97222-97241 Msa1352040:intron 25.0%
! GAACTATTTGAATTGTATGA+AGG + tig0012398:97313-97332 Msa1352040:intron 25.0%
!! GTTAGATCTTATGCAATTTT+TGG + tig0012398:97576-97595 Msa1352040:intron 25.0%
!!! TGAAAAACATTTTTGAGTGA+TGG + tig0012398:97601-97620 Msa1352040:intron 25.0%
! TTATAACATATCTAGACTAC+AGG + tig0012398:97632-97651 Msa1352040:intron 25.0%
! TTAAAATATCAGTTGGAGAT+TGG + tig0012398:97927-97946 Msa1352040:intron 25.0%
! GAAAAGATAAACAGATATTC+AGG - tig0012398:98036-98055 None:intergenic 25.0%
! GAAACAATAAGCATATTGTA+TGG + tig0012398:98077-98096 Msa1352040:intron 25.0%
!!! ATTTTGACCAGTTTTTTAAG+CGG + tig0012398:98141-98160 Msa1352040:intron 25.0%
!! TTTCATTTCAATGTTTTGTC+CGG - tig0012398:98430-98449 None:intergenic 25.0%
! GACAAAACATTGAAATGAAA+AGG + tig0012398:98430-98449 Msa1352040:CDS 25.0%
! CAAAACATTGAAATGAAAAG+GGG + tig0012398:98432-98451 Msa1352040:CDS 25.0%
!! TAACAGGATTTTCATTTTCA+AGG + tig0012398:98807-98826 Msa1352040:intron 25.0%
!! AGGTGTGATTTTCATAATTA+TGG + tig0012398:98827-98846 Msa1352040:intron 25.0%
!! GGTGTGATTTTCATAATTAT+GGG + tig0012398:98828-98847 Msa1352040:intron 25.0%
!! CAATATCTGAAGTATTAGAA+TGG - tig0012398:98952-98971 None:intergenic 25.0%
!!! ATTTGTTGTTAGCAAGAAAA+AGG + tig0012398:99627-99646 Msa1352040:CDS 25.0%
! CTCAGAAATATCCTTAATTT+GGG - tig0012398:100145-100164 None:intergenic 25.0%
!!! AGAGTAGTGTTTATTTTTGA+AGG + tig0012398:100345-100364 Msa1352040:three_prime_UTR 25.0%
! TTTACCAGCAATTATACAAA+AGG + tig0012398:100380-100399 Msa1352040:three_prime_UTR 25.0%
!! TTTTCCTTTTGTATAATTGC+TGG - tig0012398:100387-100406 None:intergenic 25.0%
! CAATATGAAATCAATCAAAG+GGG - tig0012398:100501-100520 None:intergenic 25.0%
! CCAATATGAAATCAATCAAA+GGG - tig0012398:100502-100521 None:intergenic 25.0%
! TCCAATATGAAATCAATCAA+AGG - tig0012398:100503-100522 None:intergenic 25.0%
!! ATTGATTTCATATTGGAGAT+GGG + tig0012398:100506-100525 Msa1352040:three_prime_UTR 25.0%
TTTATAGCGTAAAACAAGTG+TGG - tig0012398:95253-95272 None:intergenic 30.0%
! AAATCGAACCATATTTTCCT+AGG - tig0012398:95357-95376 None:intergenic 30.0%
GAACAAGAATGAATAAACAG+AGG - tig0012398:95840-95859 None:intergenic 30.0%
! ATGAAGTCTTTTCTATCCAA+CGG + tig0012398:95983-96002 Msa1352040:intron 30.0%
! TGAAAAAGTATGACTAACAG+TGG - tig0012398:96014-96033 None:intergenic 30.0%
GTAAGTTGTTTATGCAAACA+AGG - tig0012398:96052-96071 None:intergenic 30.0%
GTATAAGCTATAAGCTATCT+TGG + tig0012398:96145-96164 Msa1352040:intron 30.0%
ACATCATAAGACAAGAAACT+AGG + tig0012398:96464-96483 Msa1352040:intron 30.0%
! CAATTTTGCATGGCAATATA+AGG - tig0012398:96513-96532 None:intergenic 30.0%
GAAACAAATAGAATTGATCC+AGG + tig0012398:96709-96728 Msa1352040:intron 30.0%
ATGTGTATGTATGATAGTTC+TGG + tig0012398:97022-97041 Msa1352040:intron 30.0%
TACAATTCAAATAGTTCCGA+GGG - tig0012398:97310-97329 None:intergenic 30.0%
ATACAATTCAAATAGTTCCG+AGG - tig0012398:97311-97330 None:intergenic 30.0%
!! AAGGTATTTTCGATAGTTTC+AGG + tig0012398:97332-97351 Msa1352040:intron 30.0%
! GTTTGAGCTGAAGTATTATA+TGG + tig0012398:97533-97552 Msa1352040:intron 30.0%
CAGGTTACATATGTCAATTT+CGG + tig0012398:97651-97670 Msa1352040:intron 30.0%
! TCTTTTCATCTTAAATCTCC+TGG + tig0012398:97679-97698 Msa1352040:intron 30.0%
CAACATTCAAATTTAGTCAC+TGG + tig0012398:97802-97821 Msa1352040:intron 30.0%
! AAGAAGCATATTGGTGTATA+TGG + tig0012398:97883-97902 Msa1352040:intron 30.0%
AAACAGATATTCAGGATTTC+AGG - tig0012398:98028-98047 None:intergenic 30.0%
! TTCTCAAATAGTTTAGAACG+AGG - tig0012398:98060-98079 None:intergenic 30.0%
!! AGGGTTTGTTAAAACATGAA+AGG - tig0012398:98112-98131 None:intergenic 30.0%
! TGGTCAAAATTTGAAACTGA+GGG - tig0012398:98131-98150 None:intergenic 30.0%
TCATAAACCGCTTAAAAAAC+TGG - tig0012398:98151-98170 None:intergenic 30.0%
! TTCATTTCAATGTTTTGTCC+GGG - tig0012398:98429-98448 None:intergenic 30.0%
! GTGATTTTCATAATTATGGG+AGG + tig0012398:98831-98850 Msa1352040:CDS 30.0%
ATACTTCAGATATTGATGCT+AGG + tig0012398:98957-98976 Msa1352040:CDS 30.0%
! GATACATGATGAAGATTTTC+CGG + tig0012398:99060-99079 Msa1352040:CDS 30.0%
CTATTAACTCCTTTCCTTAA+CGG - tig0012398:99094-99113 None:intergenic 30.0%
!! ATAGATTTGTTGTAAGCATG+AGG + tig0012398:99110-99129 Msa1352040:CDS 30.0%
!! AGTTTTATAGTCCTCAACTT+CGG - tig0012398:99203-99222 None:intergenic 30.0%
AAGTTGAGGACTATAAAACT+GGG + tig0012398:99203-99222 Msa1352040:CDS 30.0%
TTCAAGTGAAAATGTCATCA+AGG + tig0012398:99465-99484 Msa1352040:CDS 30.0%
AAGCTGAAAAATCTGATAGA+TGG + tig0012398:99503-99522 Msa1352040:CDS 30.0%
TAGATGGTTTAGAAAGATTG+CGG + tig0012398:99519-99538 Msa1352040:CDS 30.0%
!! GATATTGCACTTGTTATATC+TGG - tig0012398:99559-99578 None:intergenic 30.0%
!! TCATATTGGTTCTACTTATG+CGG + tig0012398:99912-99931 Msa1352040:CDS 30.0%
GCTCAGAAATATCCTTAATT+TGG - tig0012398:100146-100165 None:intergenic 30.0%
ACAAAAGGAAAATGAAGATG+TGG + tig0012398:100395-100414 Msa1352040:three_prime_UTR 30.0%
! CCCTTTGATTGATTTCATAT+TGG + tig0012398:100499-100518 Msa1352040:three_prime_UTR 30.0%
! GATTGATTTCATATTGGAGA+TGG + tig0012398:100505-100524 Msa1352040:three_prime_UTR 30.0%
TTGATTTCATATTGGAGATG+GGG + tig0012398:100507-100526 Msa1352040:three_prime_UTR 30.0%
TTCTATCTTGATCCTAGAAA+TGG + tig0012398:100586-100605 Msa1352040:three_prime_UTR 30.0%
GTAAAACAAGTGTGGTCATT+TGG - tig0012398:95245-95264 None:intergenic 35.0%
GAATCAATTTAAACCAGAGG+AGG - tig0012398:95318-95337 None:intergenic 35.0%
CAATTCAATATCTTGGTCCT+AGG + tig0012398:95337-95356 Msa1352040:five_prime_UTR 35.0%
ATCTTGGTCCTAGGAAAATA+TGG + tig0012398:95346-95365 Msa1352040:five_prime_UTR 35.0%
TGAATGAAGAAAAGAGAGTG+CGG - tig0012398:95520-95539 None:intergenic 35.0%
AGAGAAGAAGAAGAAGAAGT+AGG - tig0012398:95551-95570 None:intergenic 35.0%
AAACAGAAACAAACCTGAGA+AGG - tig0012398:95805-95824 None:intergenic 35.0%
GGATAGAAAAGACTTCATCT+TGG - tig0012398:95981-96000 None:intergenic 35.0%
CACTAATGCAGTGTTACAAA+GGG - tig0012398:96282-96301 None:intergenic 35.0%
! AACACTGCATTAGTGCTTTT+TGG + tig0012398:96287-96306 Msa1352040:intron 35.0%
!! ACACTGCATTAGTGCTTTTT+GGG + tig0012398:96288-96307 Msa1352040:intron 35.0%
TCATAAGACAAGAAACTAGG+TGG + tig0012398:96467-96486 Msa1352040:intron 35.0%
!! CATGAAAGCACAATTTTGCA+TGG - tig0012398:96523-96542 None:intergenic 35.0%
TGCAAAATTGTGCTTTCATG+CGG + tig0012398:96523-96542 Msa1352040:intron 35.0%
GAACACACTCATAATGTCTA+AGG - tig0012398:96573-96592 None:intergenic 35.0%
GTGTTCAACGTTTCTTAGAT+TGG + tig0012398:96587-96606 Msa1352040:intron 35.0%
TTCAACGTTTCTTAGATTGG+AGG + tig0012398:96590-96609 Msa1352040:intron 35.0%
ATTATCCTTAGTAGGCTACT+GGG + tig0012398:96642-96661 Msa1352040:intron 35.0%
! ACTTTTGAGCAGGAAGTTTA+AGG - tig0012398:96777-96796 None:intergenic 35.0%
! GAAAGATCATACTTTTGAGC+AGG - tig0012398:96787-96806 None:intergenic 35.0%
TGGCAACTTGTGCAAATAAA+TGG - tig0012398:96868-96887 None:intergenic 35.0%
!! ATTTGCACAAGTTGCCATTT+TGG + tig0012398:96871-96890 Msa1352040:intron 35.0%
!! GAAAGAAGGGAAATTTGTTG+AGG + tig0012398:97067-97086 Msa1352040:intron 35.0%
TGGTTTGAGCTAAAGAGAAA+AGG - tig0012398:97270-97289 None:intergenic 35.0%
ACAATTCAAATAGTTCCGAG+GGG - tig0012398:97309-97328 None:intergenic 35.0%
ATATGCTTCTTATGCAGCTA+AGG - tig0012398:97874-97893 None:intergenic 35.0%
! TAGCTGCATAAGAAGCATAT+TGG + tig0012398:97874-97893 Msa1352040:intron 35.0%
GATTGGAAATTCTGATCATG+TGG + tig0012398:97944-97963 Msa1352040:intron 35.0%
! CTGGTCAAAATTTGAAACTG+AGG - tig0012398:98132-98151 None:intergenic 35.0%
! ATGACTTGTGCTTGATATGT+AGG + tig0012398:98167-98186 Msa1352040:intron 35.0%
ATTTGCTTTATCAGAGTCCA+AGG - tig0012398:98193-98212 None:intergenic 35.0%
GGACTCTGATAAAGCAAATA+TGG + tig0012398:98194-98213 Msa1352040:CDS 35.0%
TTCACCAAATAGGTTTCTGA+TGG - tig0012398:98313-98332 None:intergenic 35.0%
GCTTGAAAAGTTCACCAAAT+AGG - tig0012398:98323-98342 None:intergenic 35.0%
TGCACTGAATCAAAAGAGTT+GGG - tig0012398:98366-98385 None:intergenic 35.0%
TTGCACTGAATCAAAAGAGT+TGG - tig0012398:98367-98386 None:intergenic 35.0%
TCAGTGCAAAATCAAATACC+TGG + tig0012398:98378-98397 Msa1352040:CDS 35.0%
TTGAAATGAAAAGGGGTGAT+TGG + tig0012398:98439-98458 Msa1352040:CDS 35.0%
TGTGTAATACTGGAAAACCA+AGG + tig0012398:98539-98558 Msa1352040:intron 35.0%
! GCATTCCCTTTTTCTAATAC+TGG + tig0012398:98623-98642 Msa1352040:intron 35.0%
ACCTGCCAGTATTAGAAAAA+GGG - tig0012398:98631-98650 None:intergenic 35.0%
AGGGAGAAAAATACTTACTG+AGG - tig0012398:98746-98765 None:intergenic 35.0%
TGTATGCATCAAAACTTCGA+GGG - tig0012398:98781-98800 None:intergenic 35.0%
ATGTATGCATCAAAACTTCG+AGG - tig0012398:98782-98801 None:intergenic 35.0%
GATGCATACATCCAATTAAC+AGG + tig0012398:98791-98810 Msa1352040:intron 35.0%
TTCAGATATTGATGCTAGGT+TGG + tig0012398:98961-98980 Msa1352040:CDS 35.0%
TTCCTTAACGGCATTATTTC+CGG - tig0012398:99082-99101 None:intergenic 35.0%
GAAATAATGCCGTTAAGGAA+AGG + tig0012398:99082-99101 Msa1352040:CDS 35.0%
! GTTTTATAGTCCTCAACTTC+GGG - tig0012398:99202-99221 None:intergenic 35.0%
GAAGTTGAGGACTATAAAAC+TGG + tig0012398:99202-99221 Msa1352040:CDS 35.0%
AGTTGAGGACTATAAAACTG+GGG + tig0012398:99204-99223 Msa1352040:CDS 35.0%
!! ATGTTTTTGTAGTCAGATCG+AGG - tig0012398:99286-99305 None:intergenic 35.0%
TCGATCTGACTACAAAAACA+TGG + tig0012398:99285-99304 Msa1352040:CDS 35.0%
CGATCTGACTACAAAAACAT+GGG + tig0012398:99286-99305 Msa1352040:CDS 35.0%
GATGTATTGCTAGCAATTGA+CGG - tig0012398:99343-99362 None:intergenic 35.0%
TCACATTTCCAAGATGTGAA+AGG + tig0012398:99361-99380 Msa1352040:CDS 35.0%
CACATTTCCAAGATGTGAAA+GGG + tig0012398:99362-99381 Msa1352040:CDS 35.0%
! AACTGGCATATGATGGAAAA+GGG - tig0012398:99408-99427 None:intergenic 35.0%
CATTTCAGGGAAATCATCAT+CGG - tig0012398:99581-99600 None:intergenic 35.0%
TTGTTAGCAAGAAAAAGGAC+CGG + tig0012398:99632-99651 Msa1352040:CDS 35.0%
!! TTTTTGGCAAAGTAATCTGG+GGG - tig0012398:99739-99758 None:intergenic 35.0%
!! CTTTTTGGCAAAGTAATCTG+GGG - tig0012398:99740-99759 None:intergenic 35.0%
!! CCTTTTTGGCAAAGTAATCT+GGG - tig0012398:99741-99760 None:intergenic 35.0%
!! TCCTTTTTGGCAAAGTAATC+TGG - tig0012398:99742-99761 None:intergenic 35.0%
ATGGAACAAATTCAACAGAC+AGG + tig0012398:99776-99795 Msa1352040:CDS 35.0%
AATCATCCTCAGTATCTGAA+GGG + tig0012398:99809-99828 Msa1352040:CDS 35.0%
TTACTTGAGATCTGATCAGA+AGG - tig0012398:99886-99905 None:intergenic 35.0%
ATTGAAGGAAAATCTTCGTC+TGG - tig0012398:100180-100199 None:intergenic 35.0%
TTACGCATAGGCATTATTGA+AGG - tig0012398:100195-100214 None:intergenic 35.0%
TCAATAATGCCTATGCGTAA+AGG + tig0012398:100195-100214 Msa1352040:CDS 35.0%
CAATAATGCCTATGCGTAAA+GGG + tig0012398:100196-100215 Msa1352040:CDS 35.0%
AATAATGCCTATGCGTAAAG+GGG + tig0012398:100197-100216 Msa1352040:CDS 35.0%
TCACAACTGGAAGATTTCTT+CGG - tig0012398:100287-100306 None:intergenic 35.0%
TGGAAATGAGAGGAGAAAGA+GGG - tig0012398:95494-95513 None:intergenic 40.0%
!! GAGGCTTTGAGTTTGAGTTT+AGG - tig0012398:95578-95597 None:intergenic 40.0%
! GTGTTGTTGTTGTTGTTGTG+AGG - tig0012398:95597-95616 None:intergenic 40.0%
GAGAGAAATCTGGAAAACTC+TGG - tig0012398:95671-95690 None:intergenic 40.0%
GAAACAAACCTGAGAAGGTT+AGG - tig0012398:95800-95819 None:intergenic 40.0%
AGTACCATGTTCAACCACAA+CGG - tig0012398:95924-95943 None:intergenic 40.0%
GCACTAATGCAGTGTTACAA+AGG - tig0012398:96283-96302 None:intergenic 40.0%
! ACTAAGTGGGCTCAATTACA+TGG - tig0012398:96395-96414 None:intergenic 40.0%
CAAGTCATATCGCACTAAGT+GGG - tig0012398:96408-96427 None:intergenic 40.0%
! ATGTCTAAGGTGCAAAACAC+CGG - tig0012398:96560-96579 None:intergenic 40.0%
CATTATCCTTAGTAGGCTAC+TGG + tig0012398:96641-96660 Msa1352040:intron 40.0%
CAAATAGAATTGATCCAGGG+TGG + tig0012398:96713-96732 Msa1352040:intron 40.0%
CATGCAGAGAGACAAATTTC+TGG - tig0012398:97005-97024 None:intergenic 40.0%
CTAAAGAGAAAAGGAGTTGG+AGG - tig0012398:97261-97280 None:intergenic 40.0%
GAGCTAAAGAGAAAAGGAGT+TGG - tig0012398:97264-97283 None:intergenic 40.0%
CAATTCAAATAGTTCCGAGG+GGG - tig0012398:97308-97327 None:intergenic 40.0%
TCAGCTCAAACATAAGACAG+AGG - tig0012398:97524-97543 None:intergenic 40.0%
TAAATCTCCTGGATCAGACT+TGG + tig0012398:97690-97709 Msa1352040:intron 40.0%
! TACGCTCTTTTACGTTCAGT+AGG + tig0012398:97739-97758 Msa1352040:intron 40.0%
TCCTCCATCAGAAACCTATT+TGG + tig0012398:98306-98325 Msa1352040:CDS 40.0%
ACCAAATAGGTTTCTGATGG+AGG - tig0012398:98310-98329 None:intergenic 40.0%
AAGCTGAGTTATAGTACACC+TGG + tig0012398:98339-98358 Msa1352040:CDS 40.0%
GTGCAAAATCAAATACCTGG+TGG + tig0012398:98381-98400 Msa1352040:CDS 40.0%
! ATTTCAATGTTTTGTCCGGG+AGG - tig0012398:98426-98445 None:intergenic 40.0%
! TCCCTTTTTCTAATACTGGC+AGG + tig0012398:98627-98646 Msa1352040:intron 40.0%
CACCTGCCAGTATTAGAAAA+AGG - tig0012398:98632-98651 None:intergenic 40.0%
GTCTTGAATGTGAAGAAGCA+AGG + tig0012398:98684-98703 Msa1352040:CDS 40.0%
TCGAGGGAAAAAGATTCAGA+GGG - tig0012398:98765-98784 None:intergenic 40.0%
TTCGAGGGAAAAAGATTCAG+AGG - tig0012398:98766-98785 None:intergenic 40.0%
GAACCCAAAGATATTTGTCC+AGG - tig0012398:98890-98909 None:intergenic 40.0%
TGGTTTACATTTCCATACCC+TGG - tig0012398:98932-98951 None:intergenic 40.0%
! AGATATTGATGCTAGGTTGG+TGG + tig0012398:98964-98983 Msa1352040:CDS 40.0%
TTCCGGAAATAATGCCGTTA+AGG + tig0012398:99077-99096 Msa1352040:CDS 40.0%
GCTTCTCTTGTATTGAGCAT+TGG - tig0012398:99161-99180 None:intergenic 40.0%
TGCTCAATACAAGAGAAGCT+TGG + tig0012398:99162-99181 Msa1352040:CDS 40.0%
GCTCAATACAAGAGAAGCTT+GGG + tig0012398:99163-99182 Msa1352040:CDS 40.0%
! TTTTGTAGTCAGATCGAGGA+GGG - tig0012398:99282-99301 None:intergenic 40.0%
! TTTTTGTAGTCAGATCGAGG+AGG - tig0012398:99283-99302 None:intergenic 40.0%
! GGTGCTGAACAAAATTTCAG+TGG + tig0012398:99307-99326 Msa1352040:CDS 40.0%
TGTTGTTCCCTTTCACATCT+TGG - tig0012398:99372-99391 None:intergenic 40.0%
! ACTGGCATATGATGGAAAAG+GGG - tig0012398:99407-99426 None:intergenic 40.0%
! GAACTGGCATATGATGGAAA+AGG - tig0012398:99409-99428 None:intergenic 40.0%
TTTCCATCATATGCCAGTTC+TGG + tig0012398:99409-99428 Msa1352040:CDS 40.0%
! TACGCATTGGCATCATTTCA+GGG - tig0012398:99594-99613 None:intergenic 40.0%
! TTACGCATTGGCATCATTTC+AGG - tig0012398:99595-99614 None:intergenic 40.0%
GAAATGATGCCAATGCGTAA+AGG + tig0012398:99595-99614 Msa1352040:CDS 40.0%
! CGATTTTCTCCTTTACGCAT+TGG - tig0012398:99607-99626 None:intergenic 40.0%
!! CTTATATGCTGGTGTTGTCA+AGG - tig0012398:99659-99678 None:intergenic 40.0%
ACCAGCATATAAGAGACGTT+TGG + tig0012398:99666-99685 Msa1352040:CDS 40.0%
ATATAAGAGACGTTTGGCCA+TGG + tig0012398:99672-99691 Msa1352040:CDS 40.0%
AGTATTACCAGATTGCTCCA+TGG - tig0012398:99692-99711 None:intergenic 40.0%
CCCAGATTACTTTGCCAAAA+AGG + tig0012398:99738-99757 Msa1352040:CDS 40.0%
TGCCAAAAAGGAAAAACCAC+AGG + tig0012398:99750-99769 Msa1352040:CDS 40.0%
! TGCCTGTGGTTTTTCCTTTT+TGG - tig0012398:99755-99774 None:intergenic 40.0%
TACTGAGGATGATTCAACAC+TGG - tig0012398:99803-99822 None:intergenic 40.0%
GAATCATCCTCAGTATCTGA+AGG + tig0012398:99808-99827 Msa1352040:CDS 40.0%
AAGCAGTGGAAATTCAAGTC+AGG + tig0012398:99939-99958 Msa1352040:CDS 40.0%
ATGGTCAGGGAAAAGTTTAG+AGG + tig0012398:100044-100063 Msa1352040:CDS 40.0%
TGGTCAGGGAAAAGTTTAGA+GGG + tig0012398:100045-100064 Msa1352040:CDS 40.0%
GAAAAGTTTAGAGGGATCAG+CGG + tig0012398:100053-100072 Msa1352040:CDS 40.0%
! CCTTCATTTTCTCTCTTGAC+AGG - tig0012398:100318-100337 None:intergenic 40.0%
CCTGTCAAGAGAGAAAATGA+AGG + tig0012398:100315-100334 Msa1352040:CDS 40.0%
GTGTGGTCATTTGGAAGTCA+AGG - tig0012398:95236-95255 None:intergenic 45.0%
TTCTTCACTTCATCCTCCTC+TGG + tig0012398:95302-95321 Msa1352040:five_prime_UTR 45.0%
GAGGAAGAAGATGAACCTTG+GGG - tig0012398:95447-95466 None:intergenic 45.0%
GGAGGAAGAAGATGAACCTT+GGG - tig0012398:95448-95467 None:intergenic 45.0%
GTGGAAATGAGAGGAGAAAG+AGG - tig0012398:95495-95514 None:intergenic 45.0%
! ATGAAGAAAAGAGAGTGCGG+TGG - tig0012398:95517-95536 None:intergenic 45.0%
AATCTGGAAAACTCTGGCCA+TGG - tig0012398:95665-95684 None:intergenic 45.0%
GGAGATGTGTGAGAGAAATC+TGG - tig0012398:95681-95700 None:intergenic 45.0%
GAGATAGACCTAACCTTCTC+AGG + tig0012398:95789-95808 Msa1352040:CDS 45.0%
TGCGAGTCGGAGAACATAAA+CGG - tig0012398:95947-95966 None:intergenic 45.0%
CCAAGTCATATCGCACTAAG+TGG - tig0012398:96409-96428 None:intergenic 45.0%
CCACTTAGTGCGATATGACT+TGG + tig0012398:96406-96425 Msa1352040:intron 45.0%
AAGGTGCAAAACACCGGAAA+TGG - tig0012398:96554-96573 None:intergenic 45.0%
GAAAAGGAGTTGGAGGTCTT+GGG - tig0012398:97254-97273 None:intergenic 45.0%
AGAAAAGGAGTTGGAGGTCT+TGG - tig0012398:97255-97274 None:intergenic 45.0%
AAATAGTTCCGAGGGGGATT+GGG - tig0012398:97302-97321 None:intergenic 45.0%
TGTGCTTGATATGTAGGCCT+TGG + tig0012398:98173-98192 Msa1352040:intron 45.0%
GAGTTATGCAAGTAGCTGCT+TGG + tig0012398:98239-98258 Msa1352040:CDS 45.0%
GAATCAAAAGAGTTGGGTCC+AGG - tig0012398:98360-98379 None:intergenic 45.0%
! CATTTTCTCTACGCTCACCT+TGG - tig0012398:98559-98578 None:intergenic 45.0%
GTGAAGAAGCAAGGCCAAAA+AGG + tig0012398:98693-98712 Msa1352040:CDS 45.0%
!! GGAGGAATGTAGCTTGCTTA+CGG + tig0012398:98849-98868 Msa1352040:CDS 45.0%
CGGCCTGGACAAATATCTTT+GGG + tig0012398:98884-98903 Msa1352040:CDS 45.0%
! TGGATGTGATGTGGTATTGG+TGG - tig0012398:98912-98931 None:intergenic 45.0%
ACCAATACCACATCACATCC+AGG + tig0012398:98911-98930 Msa1352040:CDS 45.0%
CCAATACCACATCACATCCA+GGG + tig0012398:98912-98931 Msa1352040:CDS 45.0%
!! GTTGGTGGCTAATGAAGAGA+AGG + tig0012398:98979-98998 Msa1352040:CDS 45.0%
AAGCATGAGGAAAACTCCAC+TGG + tig0012398:99123-99142 Msa1352040:CDS 45.0%
GATACTCTGGACGACATTCT+AGG + tig0012398:99244-99263 Msa1352040:CDS 45.0%
GACATTCTAGGTCGTTCAAC+TGG + tig0012398:99256-99275 Msa1352040:CDS 45.0%
TCACCAGAACTGGCATATGA+TGG - tig0012398:99415-99434 None:intergenic 45.0%
GCCAAACGTCTCTTATATGC+TGG - tig0012398:99670-99689 None:intergenic 45.0%
GCAAAGTAATCTGGGGGAAA+GGG - tig0012398:99733-99752 None:intergenic 45.0%
AAGGAAAAACCACAGGCAGA+TGG + tig0012398:99757-99776 Msa1352040:CDS 45.0%
! GAATTTGTTCCATCTGCCTG+TGG - tig0012398:99769-99788 None:intergenic 45.0%
CTTGAGATCTGATCAGAAGG+AGG - tig0012398:99883-99902 None:intergenic 45.0%
GATGAACTCTCGGTCAGATT+TGG - tig0012398:99985-100004 None:intergenic 45.0%
TGAACCTGTGGATGAACTCT+CGG - tig0012398:99995-100014 None:intergenic 45.0%
!! ACCAGAGTGTTGGAACAGAA+TGG + tig0012398:100025-100044 Msa1352040:CDS 45.0%
ACCATTCTGTTCCAACACTC+TGG - tig0012398:100029-100048 None:intergenic 45.0%
! AGTGTTGGAACAGAATGGTC+AGG + tig0012398:100030-100049 Msa1352040:CDS 45.0%
GTGTTGGAACAGAATGGTCA+GGG + tig0012398:100031-100050 Msa1352040:CDS 45.0%
TCGGACATATCCAAAGGATC+CGG - tig0012398:100087-100106 None:intergenic 45.0%
! CCTTAATTTGGGCAACACGA+CGG - tig0012398:100134-100153 None:intergenic 45.0%
ACAGATTCGTTGTGAGCAAG+CGG + tig0012398:100223-100242 Msa1352040:CDS 45.0%
GATGTCAATCTCCTTTCCAG+TGG - tig0012398:100255-100274 None:intergenic 45.0%
TGATCTATCTCAGCCTCGTC+CGG + tig0012398:95400-95419 Msa1352040:five_prime_UTR 50.0%
GAAGAAGATGAACCTTGGGG+AGG - tig0012398:95444-95463 None:intergenic 50.0%
CGGAGGAAGAAGATGAACCT+TGG - tig0012398:95449-95468 None:intergenic 50.0%
AGAGGAGACGGATATTGTGG+CGG - tig0012398:95469-95488 None:intergenic 50.0%
GAGAGAGGAGACGGATATTG+TGG - tig0012398:95472-95491 None:intergenic 50.0%
AGAAAGAGGGAGAGAGGAGA+CGG - tig0012398:95481-95500 None:intergenic 50.0%
! AAGAAAAGAGAGTGCGGTGG+TGG - tig0012398:95514-95533 None:intergenic 50.0%
GAGGGGAGATTGTGAAGGTT+GGG - tig0012398:95627-95646 None:intergenic 50.0%
TGAGGGGAGATTGTGAAGGT+TGG - tig0012398:95628-95647 None:intergenic 50.0%
AAACTCTGGCCATGGATGGT+GGG - tig0012398:95657-95676 None:intergenic 50.0%
AAAACTCTGGCCATGGATGG+TGG - tig0012398:95658-95677 None:intergenic 50.0%
TGGAAAACTCTGGCCATGGA+TGG - tig0012398:95661-95680 None:intergenic 50.0%
GTTGCCGTTGTGGTTGAACA+TGG + tig0012398:95917-95936 Msa1352040:CDS 50.0%
! GTTTATGTTCTCCGACTCGC+AGG + tig0012398:95946-95965 Msa1352040:CDS 50.0%
GGAAACAGAATCCTGCGAGT+CGG - tig0012398:95960-95979 None:intergenic 50.0%
ACTAACAGTGGAGTCACCGT+TGG - tig0012398:96002-96021 None:intergenic 50.0%
TCATGCGGTCTCTCCATTTC+CGG + tig0012398:96538-96557 Msa1352040:intron 50.0%
ACTCACCCAGTAGCCTACTA+AGG - tig0012398:96650-96669 None:intergenic 50.0%
TAGTAGGCTACTGGGTGAGT+AGG + tig0012398:96650-96669 Msa1352040:intron 50.0%
AGTAGGCTACTGGGTGAGTA+GGG + tig0012398:96651-96670 Msa1352040:intron 50.0%
!! GAAAACTAAGAGCACCACCC+TGG - tig0012398:96730-96749 None:intergenic 50.0%
GAGAACAAAAGTCGCTCTGG+CGG - tig0012398:96926-96945 None:intergenic 50.0%
GCAGAGAACAAAAGTCGCTC+TGG - tig0012398:96929-96948 None:intergenic 50.0%
CTTGGGTTCAAACCGAACGA+AGG - tig0012398:97237-97256 None:intergenic 50.0%
TTGAGTTACCCAATCCCCCT+CGG + tig0012398:97291-97310 Msa1352040:intron 50.0%
CAAATAGTTCCGAGGGGGAT+TGG - tig0012398:97303-97322 None:intergenic 50.0%
GCTAAAGCCAAGTCTGATCC+AGG - tig0012398:97700-97719 None:intergenic 50.0%
GCTGCTTGGTCTCTTCAGAA+AGG + tig0012398:98253-98272 Msa1352040:CDS 50.0%
GTACGCTCAAATCTACCACC+AGG - tig0012398:98399-98418 None:intergenic 50.0%
TTTGAGCGTACAATGCCTCC+CGG + tig0012398:98408-98427 Msa1352040:CDS 50.0%
GGGGTGATTGGATTTGCCTA+AGG + tig0012398:98451-98470 Msa1352040:CDS 50.0%
AGGCCAAAAAGGCAACTGAC+TGG + tig0012398:98704-98723 Msa1352040:CDS 50.0%
! CCTCCAGTCAGTTGCCTTTT+TGG - tig0012398:98710-98729 None:intergenic 50.0%
CCAAAAAGGCAACTGACTGG+AGG + tig0012398:98707-98726 Msa1352040:CDS 50.0%
GCAACTGACTGGAGGAGAAT+GGG + tig0012398:98715-98734 Msa1352040:CDS 50.0%
GCTTACGGTGTGATTGCAAG+CGG + tig0012398:98864-98883 Msa1352040:CDS 50.0%
GCGGCCTGGACAAATATCTT+TGG + tig0012398:98883-98902 Msa1352040:CDS 50.0%
CCCTGGATGTGATGTGGTAT+TGG - tig0012398:98915-98934 None:intergenic 50.0%
ACCACATCACATCCAGGGTA+TGG + tig0012398:98917-98936 Msa1352040:CDS 50.0%
TCCATACCCTGGATGTGATG+TGG - tig0012398:98921-98940 None:intergenic 50.0%
! ATGAAGAGAAGGCACGACGT+TGG + tig0012398:98990-99009 Msa1352040:CDS 50.0%
!! GGCACGACGTTGGTTTAACA+AGG + tig0012398:99000-99019 Msa1352040:CDS 50.0%
TGAGGAAAACTCCACTGGAG+AGG + tig0012398:99128-99147 Msa1352040:CDS 50.0%
AGCCAAGTCTCGTGATACTC+TGG + tig0012398:99231-99250 Msa1352040:CDS 50.0%
! GTCCAGAGTATCACGAGACT+TGG - tig0012398:99236-99255 None:intergenic 50.0%
ACTGTCAGTGTCACCAGAAC+TGG - tig0012398:99425-99444 None:intergenic 50.0%
!! ATGCTGGTGTTGTCAAGGAC+CGG - tig0012398:99654-99673 None:intergenic 50.0%
! TCTGGGGGAAAGGGTACAAA+GGG - tig0012398:99724-99743 None:intergenic 50.0%
! ATCTGGGGGAAAGGGTACAA+AGG - tig0012398:99725-99744 None:intergenic 50.0%
GGCAAAGTAATCTGGGGGAA+AGG - tig0012398:99734-99753 None:intergenic 50.0%
CTCAGTCCCTTCAGATACTG+AGG - tig0012398:99818-99837 None:intergenic 50.0%
TCTGAAGGGACTGAGATGTC+AGG + tig0012398:99823-99842 Msa1352040:CDS 50.0%
ATCTGATCAGAAGGAGGTCC+TGG - tig0012398:99877-99896 None:intergenic 50.0%
ACTTATGCGGCTTCAAGCAG+TGG + tig0012398:99925-99944 Msa1352040:CDS 50.0%
GTTCTCAGATGCTGAACCTG+TGG - tig0012398:100007-100026 None:intergenic 50.0%
GCATCTGAGAACCAGAGTGT+TGG + tig0012398:100015-100034 Msa1352040:CDS 50.0%
TTTAGAGGGATCAGCGGTCA+GGG + tig0012398:100059-100078 Msa1352040:CDS 50.0%
GGATCCTTTGGATATGTCCG+AGG + tig0012398:100086-100105 Msa1352040:CDS 50.0%
TCCTTTGGATATGTCCGAGG+AGG + tig0012398:100089-100108 Msa1352040:CDS 50.0%
CCGTCGTGTTGCCCAAATTA+AGG + tig0012398:100131-100150 Msa1352040:CDS 50.0%
CTGTTCACCCCTTTACGCAT+AGG - tig0012398:100207-100226 None:intergenic 50.0%
AGCGGAAAACACCACTGGAA+AGG + tig0012398:100241-100260 Msa1352040:CDS 50.0%
ACAGGATCTGAGCTCACAAC+TGG - tig0012398:100300-100319 None:intergenic 50.0%
TCAGCCTCGTCCGGCAAAAA+TGG + tig0012398:95409-95428 Msa1352040:exon 55.0%
CAGCCTCGTCCGGCAAAAAT+GGG + tig0012398:95410-95429 Msa1352040:exon 55.0%
GAAGATGAACCTTGGGGAGG+CGG - tig0012398:95441-95460 None:intergenic 55.0%
GAGAGGAGAAAGAGGGAGAG+AGG - tig0012398:95487-95506 None:intergenic 55.0%
!! AGTGCGGTGGTGGAAATGAG+AGG - tig0012398:95504-95523 None:intergenic 55.0%
CCACTGAGGGGAGATTGTGA+AGG - tig0012398:95632-95651 None:intergenic 55.0%
CCTTCACAATCTCCCCTCAG+TGG + tig0012398:95629-95648 Msa1352040:CDS 55.0%
!! TGGATGGTGGGTTCCACTGA+GGG - tig0012398:95645-95664 None:intergenic 55.0%
!! ATGGATGGTGGGTTCCACTG+AGG - tig0012398:95646-95665 None:intergenic 55.0%
TCAGTGGAACCCACCATCCA+TGG + tig0012398:95645-95664 Msa1352040:CDS 55.0%
TTCAGCCTGTGGCAATTCGC+CGG - tig0012398:95744-95763 None:intergenic 55.0%
!! CAAGCACTGACTTCAGCCTG+TGG - tig0012398:95755-95774 None:intergenic 55.0%
GATCAGAGACGTTGCCGTTG+TGG + tig0012398:95907-95926 Msa1352040:CDS 55.0%
GTAGGCTACTGGGTGAGTAG+GGG + tig0012398:96652-96671 Msa1352040:intron 55.0%
TAGGCTACTGGGTGAGTAGG+GGG + tig0012398:96653-96672 Msa1352040:intron 55.0%
GGGGGATTGGGTAACTCAAC+TGG - tig0012398:97290-97309 None:intergenic 55.0%
GGCAACTGACTGGAGGAGAA+TGG + tig0012398:98714-98733 Msa1352040:CDS 55.0%
GGAAAACTCCACTGGAGAGG+AGG + tig0012398:99131-99150 Msa1352040:CDS 55.0%
TTGGTCAACCTCCTCTCCAG+TGG - tig0012398:99142-99161 None:intergenic 55.0%
TAACGACGCTCCCGAAGTTG+AGG + tig0012398:99189-99208 Msa1352040:CDS 55.0%
CGTTTGGCCATGGAGCAATC+TGG + tig0012398:99682-99701 Msa1352040:CDS 55.0%
! CTGGGGGAAAGGGTACAAAG+GGG - tig0012398:99723-99742 None:intergenic 55.0%
GCTAGACCTGAACAGAGTCC+AGG + tig0012398:99856-99875 Msa1352040:CDS 55.0%
CTGACCGAGAGTTCATCCAC+AGG + tig0012398:99988-100007 Msa1352040:CDS 55.0%
GTTTAGAGGGATCAGCGGTC+AGG + tig0012398:100058-100077 Msa1352040:CDS 55.0%
GCCTCCTCGGACATATCCAA+AGG - tig0012398:100093-100112 None:intergenic 55.0%
GGATATGTCCGAGGAGGCAA+AGG + tig0012398:100095-100114 Msa1352040:CDS 55.0%
GAGCAAGCGGAAAACACCAC+TGG + tig0012398:100236-100255 Msa1352040:CDS 55.0%
CCTCGTCCGGCAAAAATGGG+CGG + tig0012398:95413-95432 Msa1352040:exon 60.0%
GGAGACGGATATTGTGGCGG+AGG - tig0012398:95466-95485 None:intergenic 60.0%
!! GGATGGTGGGTTCCACTGAG+GGG - tig0012398:95644-95663 None:intergenic 60.0%
CTCTCACACATCTCCTCCGC+CGG + tig0012398:95686-95705 Msa1352040:CDS 60.0%
TGGGAGGAAAACCATCGGCG+GGG - tig0012398:95721-95740 None:intergenic 60.0%
GTGGGAGGAAAACCATCGGC+GGG - tig0012398:95722-95741 None:intergenic 60.0%
GGTGGGAGGAAAACCATCGG+CGG - tig0012398:95723-95742 None:intergenic 60.0%
! GCCGATGGTTTTCCTCCCAC+CGG + tig0012398:95722-95741 Msa1352040:CDS 60.0%
GCCGGTGGGAGGAAAACCAT+CGG - tig0012398:95726-95745 None:intergenic 60.0%
!! GGGTGAGTAGGGGGTGCTTT+AGG + tig0012398:96662-96681 Msa1352040:intron 60.0%
TCGCTCTGGCGGCAGTTCTA+TGG - tig0012398:96915-96934 None:intergenic 60.0%
GGAGGTCCTGGACTCTGTTC+AGG - tig0012398:99865-99884 None:intergenic 60.0%
GGTCAGGGAACCGGATCCTT+TGG + tig0012398:100074-100093 Msa1352040:CDS 60.0%
CCTCTCTGCCTTTGCCTCCT+CGG - tig0012398:100106-100125 None:intergenic 60.0%
AGGAGGCAAAGGCAGAGAGG+TGG + tig0012398:100106-100125 Msa1352040:CDS 60.0%
!! CCGCCCATTTTTGCCGGACG+AGG - tig0012398:95416-95435 None:intergenic 65.0%
ATCGGCGGGGGATGTGTAGC+CGG - tig0012398:95708-95727 None:intergenic 65.0%
GGGAGGAAAACCATCGGCGG+GGG - tig0012398:95720-95739 None:intergenic 65.0%
TGTGGCAATTCGCCGGTGGG+AGG - tig0012398:95737-95756 None:intergenic 65.0%
TCCCACCGGCGAATTGCCAC+AGG + tig0012398:95736-95755 Msa1352040:CDS 65.0%
GCCTGTGGCAATTCGCCGGT+GGG - tig0012398:95740-95759 None:intergenic 65.0%
AGCCTGTGGCAATTCGCCGG+TGG - tig0012398:95741-95760 None:intergenic 65.0%
CGGTGTGATTGCAAGCGGCC+TGG + tig0012398:98869-98888 Msa1352040:CDS 65.0%
GGGATCAGCGGTCAGGGAAC+CGG + tig0012398:100065-100084 Msa1352040:CDS 65.0%
CCGAGGAGGCAAAGGCAGAG+AGG + tig0012398:100103-100122 Msa1352040:CDS 65.0%
!! GCGGCGCCGCCCATTTTTGC+CGG - tig0012398:95422-95441 None:intergenic 70.0%
GGCTACACATCCCCCGCCGA+TGG + tig0012398:95707-95726 Msa1352040:CDS 70.0%
GGGGGATGTGTAGCCGGCGG+AGG - tig0012398:95702-95721 None:intergenic 75.0%
GGCGGGGGATGTGTAGCCGG+CGG - tig0012398:95705-95724 None:intergenic 75.0%
! TGGGCGGCGCCGCCTCCCCA+AGG + tig0012398:95429-95448 Msa1352040:CDS 85.0%
Chromosome Type Strat End Strand Name
tig0012398 gene 95214 100644 95214 ID=Msa1352040;Name=Msa1352040
tig0012398 mRNA 95214 100644 95214 ID=Msa1352040-mRNA-1;Parent=Msa1352040;Name=Msa1352040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=214|0.75|0.8|1|1|1|5|300|785
tig0012398 exon 95214 95810 95214 ID=Msa1352040-mRNA-1:exon:7951;Parent=Msa1352040-mRNA-1
tig0012398 exon 95898 95973 95898 ID=Msa1352040-mRNA-1:exon:7952;Parent=Msa1352040-mRNA-1
tig0012398 exon 98189 98472 98189 ID=Msa1352040-mRNA-1:exon:7953;Parent=Msa1352040-mRNA-1
tig0012398 exon 98649 98747 98649 ID=Msa1352040-mRNA-1:exon:7954;Parent=Msa1352040-mRNA-1
tig0012398 exon 98829 100644 98829 ID=Msa1352040-mRNA-1:exon:7955;Parent=Msa1352040-mRNA-1
tig0012398 five_prime_UTR 95214 95427 95214 ID=Msa1352040-mRNA-1:five_prime_utr;Parent=Msa1352040-mRNA-1
tig0012398 CDS 95428 95810 95428 ID=Msa1352040-mRNA-1:cds;Parent=Msa1352040-mRNA-1
tig0012398 CDS 95898 95973 95898 ID=Msa1352040-mRNA-1:cds;Parent=Msa1352040-mRNA-1
tig0012398 CDS 98189 98472 98189 ID=Msa1352040-mRNA-1:cds;Parent=Msa1352040-mRNA-1
tig0012398 CDS 98649 98747 98649 ID=Msa1352040-mRNA-1:cds;Parent=Msa1352040-mRNA-1
tig0012398 CDS 98829 100344 98829 ID=Msa1352040-mRNA-1:cds;Parent=Msa1352040-mRNA-1
tig0012398 three_prime_UTR 100345 100644 100345 ID=Msa1352040-mRNA-1:three_prime_utr;Parent=Msa1352040-mRNA-1
Gene Sequence

>Msa1352040

ATGGGCGGCGCCGCCTCCCCAAGGTTCATCTTCTTCCTCCGCCACAATATCCGTCTCCTCTCTCCCTCTTTCTCCTCTCATTTCCACCACCGCACTCTCTTTTCTTCATTCACTCGCTCTCCTACTTCTTCTTCTTCTTCTCTCACACCTAAACTCAAACTCAAAGCCTCACAACAACAACAACAACACATTCACACCCAACCTTCACAATCTCCCCTCAGTGGAACCCACCATCCATGGCCAGAGTTTTCCAGATTTCTCTCACACATCTCCTCCGCCGGCTACACATCCCCCGCCGATGGTTTTCCTCCCACCGGCGAATTGCCACAGGCTGAAGTCAGTGCTTGCTTGTCTTTCGCTCGAGATAGACCTAACCTTCTCAGGTTGCTTTCGATCAGAGACGTTGCCGTTGTGGTTGAACATGGTACTCCGTTTATGTTCTCCGACTCGCAGGATTCTGCCTTGGACTCTGATAAAGCAAATATGGTTGATCTGATGAAATTTATGCTGAGTTATGCAAGTAGCTGCTTGGTCTCTTCAGAAAGGAACAATCTTTATAACAGAAATCTTGTTGAATCCTCCATCAGAAACCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTACACCTGGACCCAACTCTTTTGATTCAGTGCAAAATCAAATACCTGGTGGTAGATTTGAGCGTACAATGCCTCCCGGACAAAACATTGAAATGAAAAGGGGTGATTGGATTTGCCTAAGGTGTAGTTTCATGAATTTTGCAAGAAATATGAAATGTCTTGAATGTGAAGAAGCAAGGCCAAAAAGGCAACTGACTGGAGGAGAATGGGAATGTCCTCAGTGTGATTTTCATAATTATGGGAGGAATGTAGCTTGCTTACGGTGTGATTGCAAGCGGCCTGGACAAATATCTTTGGGTTCCACCAATACCACATCACATCCAGGGTATGGAAATGTAAACCATTCTAATACTTCAGATATTGATGCTAGGTTGGTGGCTAATGAAGAGAAGGCACGACGTTGGTTTAACAAGGTTTCTCAACTAGACAGCAACTCTGATATTAACAGTGTGATACATGATGAAGATTTTCCGGAAATAATGCCGTTAAGGAAAGGAGTTAATAGATTTGTTGTAAGCATGAGGAAAACTCCACTGGAGAGGAGGTTGACCAATGCTCAATACAAGAGAAGCTTGGGAAATAACGACGCTCCCGAAGTTGAGGACTATAAAACTGGGGAGTCAGCCAAGTCTCGTGATACTCTGGACGACATTCTAGGTCGTTCAACTGGCCCTCCTCGATCTGACTACAAAAACATGGGTGCTGAACAAAATTTCAGTGGAGAAAGACAACCGTCAATTGCTAGCAATACATCACATTTCCAAGATGTGAAAGGGAACAACACTAATACTCTTTCCCCTTTTCCATCATATGCCAGTTCTGGTGACACTGACAGTACACAACTTTCTAATAACTTTTCAAGTGAAAATGTCATCAAGGACAAAGAGAGTGAGCAAGCTGAAAAATCTGATAGATGGTTTAGAAAGATTGCGGAGCTGAATGATGTTCCAGATATAACAAGTGCAATATCCGATGATGATTTCCCTGAAATGATGCCAATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAGGACCGGTCCTTGACAACACCAGCATATAAGAGACGTTTGGCCATGGAGCAATCTGGTAATACTAACTTTGTCCCCTTTGTACCCTTTCCCCCAGATTACTTTGCCAAAAAGGAAAAACCACAGGCAGATGGAACAAATTCAACAGACAGGTCCAGTGTTGAATCATCCTCAGTATCTGAAGGGACTGAGATGTCAGGTGATGCTACAGCTAGACCTGAACAGAGTCCAGGACCTCCTTCTGATCAGATCTCAAGTAAAAACAATCATATTGGTTCTACTTATGCGGCTTCAAGCAGTGGAAATTCAAGTCAGGATTTCAATCAAGATCATGTGCCAAATCTGACCGAGAGTTCATCCACAGGTTCAGCATCTGAGAACCAGAGTGTTGGAACAGAATGGTCAGGGAAAAGTTTAGAGGGATCAGCGGTCAGGGAACCGGATCCTTTGGATATGTCCGAGGAGGCAAAGGCAGAGAGGTGGTTCCGTCGTGTTGCCCAAATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGACGAAGATTTTCCTTCAATAATGCCTATGCGTAAAGGGGTGAACAGATTCGTTGTGAGCAAGCGGAAAACACCACTGGAAAGGAGATTGACATCTCAGCAGTACCGAAGAAATCTTCCAGTTGTGAGCTCAGATCCTGTCAAGAGAGAAAATGAAGGTAGCTGA
Protein sequence

>Msa1352040

MGGAASPRFIFFLRHNIRLLSPSFSSHFHHRTLFSSFTRSPTSSSSSLTPKLKLKASQQQQQHIHTQPSQSPLSGTHHPWPEFSRFLSHISSAGYTSPADGFPPTGELPQAEVSACLSFARDRPNLLRLLSIRDVAVVVEHGTPFMFSDSQDSALDSDKANMVDLMKFMLSYASSCLVSSERNNLYNRNLVESSIRNLFGELFKLSYSTPGPNSFDSVQNQIPGGRFERTMPPGQNIEMKRGDWICLRCSFMNFARNMKCLECEEARPKRQLTGGEWECPQCDFHNYGRNVACLRCDCKRPGQISLGSTNTTSHPGYGNVNHSNTSDIDARLVANEEKARRWFNKVSQLDSNSDINSVIHDEDFPEIMPLRKGVNRFVVSMRKTPLERRLTNAQYKRSLGNNDAPEVEDYKTGESAKSRDTLDDILGRSTGPPRSDYKNMGAEQNFSGERQPSIASNTSHFQDVKGNNTNTLSPFPSYASSGDTDSTQLSNNFSSENVIKDKESEQAEKSDRWFRKIAELNDVPDITSAISDDDFPEMMPMRKGENRFVVSKKKDRSLTTPAYKRRLAMEQSGNTNFVPFVPFPPDYFAKKEKPQADGTNSTDRSSVESSSVSEGTEMSGDATARPEQSPGPPSDQISSKNNHIGSTYAASSSGNSSQDFNQDHVPNLTESSSTGSASENQSVGTEWSGKSLEGSAVREPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPVVSSDPVKRENEGS*