Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353020 | XP_013470280.1 | 98.980 | 98 | 1 | 0 | 2 | 99 | 183 | 280 | 8.84e-63 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353020 | sp|Q9LZ23|ACR12_ARATH | 83.673 | 98 | 16 | 0 | 2 | 99 | 204 | 301 | 6.30e-55 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353020 | A0A072VSB7 | 98.980 | 98 | 1 | 0 | 2 | 99 | 183 | 280 | 4.22e-63 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044120 | Msa1353020 | 0.889435 | 2.428519e-73 | -8.615850e-47 |
| Msa1353020 | Msa1369720 | 0.868870 | 4.733994e-66 | -8.615850e-47 |
| Msa1353020 | Msa1447140 | 0.841435 | 4.761838e-58 | -8.615850e-47 |
| Msa0183730 | Msa1353020 | 0.869628 | 2.686117e-66 | -8.615850e-47 |
| Msa1265140 | Msa1353020 | -0.802232 | 6.186059e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353020 | MtrunA17_Chr1g0210741 | 98.980 | 98 | 1 | 0 | 2 | 99 | 183 | 280 | 8.13e-67 | 202 |
| Msa1353020 | MtrunA17_Chr2g0333871 | 60.204 | 98 | 39 | 0 | 2 | 99 | 193 | 290 | 3.58e-39 | 131 |
| Msa1353020 | MtrunA17_Chr4g0001421 | 58.163 | 98 | 41 | 0 | 2 | 99 | 196 | 293 | 8.97e-39 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353020 | AT5G04740.2 | 83.673 | 98 | 16 | 0 | 2 | 99 | 103 | 200 | 3.44e-57 | 175 |
| Msa1353020 | AT5G04740.1 | 83.673 | 98 | 16 | 0 | 2 | 99 | 204 | 301 | 6.40e-56 | 175 |
| Msa1353020 | AT1G16880.1 | 59.794 | 97 | 39 | 0 | 3 | 99 | 194 | 290 | 2.04e-38 | 130 |
Find 34 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTATCAATATCTGTTTC+TGG | 0.249349 | tig0012986:+1526 | Msa1353020:intergenic |
| TCTGTGTTTGAATTTATTTA+TGG | 0.310981 | tig0012986:-1324 | Msa1353020:three_prime_UTR |
| TGCAACTCATATTCAAGTTA+AGG | 0.354573 | tig0012986:-2299 | Msa1353020:CDS |
| CCTCACAGGTGATAATAATA+TGG | 0.372412 | tig0012986:+1426 | Msa1353020:intergenic |
| CATATTCAAGTTAAGGAAGA+TGG | 0.394527 | tig0012986:-2292 | Msa1353020:CDS |
| GATAAATTTCATGTCAGTTA+TGG | 0.404791 | tig0012986:-1863 | Msa1353020:CDS |
| CATAGATGCAAACCTCCTCT+TGG | 0.437658 | tig0012986:+2267 | Msa1353020:intergenic |
| CAATATCTGTTTCTGGCGTC+CGG | 0.467240 | tig0012986:+1533 | Msa1353020:intergenic |
| GTGTTTGAATTTATTTATGG+TGG | 0.477827 | tig0012986:-1321 | Msa1353020:three_prime_UTR |
| AAATTTCATGTCAGTTATGG+TGG | 0.491300 | tig0012986:-1860 | Msa1353020:CDS |
| GCTTTACTGCTTCCAGATTG+TGG | 0.491426 | tig0012986:-1377 | Msa1353020:three_prime_UTR |
| ATAGATGCAAACCTCCTCTT+GGG | 0.508203 | tig0012986:+2268 | Msa1353020:intergenic |
| GATTATTATACAAGTAAATG+AGG | 0.509086 | tig0012986:+1494 | Msa1353020:intergenic |
| ATTAAACAGATCAATGTCTC+AGG | 0.515343 | tig0012986:-1831 | Msa1353020:intron |
| ATGTGAGATGTGTGCCTCAC+AGG | 0.522074 | tig0012986:+1412 | Msa1353020:intergenic |
| ATCGAGACAGCAGATAGGCC+AGG | 0.530479 | tig0012986:-2064 | Msa1353020:CDS |
| AATTTCATGTCAGTTATGGT+GGG | 0.532815 | tig0012986:-1859 | Msa1353020:CDS |
| ATAATATGGAGCTGACACTT+TGG | 0.554267 | tig0012986:+1440 | Msa1353020:intergenic |
| ATATTCAAGTTAAGGAAGAT+GGG | 0.558978 | tig0012986:-2291 | Msa1353020:CDS |
| ATTATTTCAACTAGCAACCC+TGG | 0.562653 | tig0012986:+2046 | Msa1353020:intergenic |
| TCTGCAGGGTTTGATTGCTA+AGG | 0.568190 | tig0012986:-1885 | Msa1353020:intron |
| TGTACATCGAGACAGCAGAT+AGG | 0.569651 | tig0012986:-2069 | Msa1353020:CDS |
| ACTGTCTGCGTTACTACCTC+CGG | 0.580821 | tig0012986:-1552 | Msa1353020:CDS |
| ATTTCATGTCAGTTATGGTG+GGG | 0.585354 | tig0012986:-1858 | Msa1353020:CDS |
| TCGAGACAGCAGATAGGCCA+GGG | 0.587797 | tig0012986:-2063 | Msa1353020:CDS |
| AGGAAGATGGGCCCAAGAGG+AGG | 0.600783 | tig0012986:-2279 | Msa1353020:intron |
| TAAATAAATTCAAACACAGA+CGG | 0.614280 | tig0012986:+1327 | Msa1353020:intergenic |
| TTAAGGAAGATGGGCCCAAG+AGG | 0.615605 | tig0012986:-2282 | Msa1353020:CDS |
| ACAGATATTGATAGTTACTG+AGG | 0.615661 | tig0012986:-1520 | Msa1353020:exon |
| TATCTGTTTCTGGCGTCCGG+AGG | 0.629851 | tig0012986:+1536 | Msa1353020:intergenic |
| TGTGAACATTGATGTTGAGT+CGG | 0.660513 | tig0012986:-2008 | Msa1353020:CDS |
| CAGATATTGATAGTTACTGA+GGG | 0.663496 | tig0012986:-1519 | Msa1353020:exon |
| GTCGGCTGAGATCGATACAG+AGG | 0.702999 | tig0012986:-1990 | Msa1353020:intron |
| CCATATTATTATCACCTGTG+AGG | 0.728472 | tig0012986:-1426 | Msa1353020:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAAAAAATAAAA+CGG | + | tig0012986:1348-1367 | None:intergenic | 0.0% |
| !! | ATAAAAAATAAAAAATAAAA+CGG | + | tig0012986:1348-1367 | Msa1353020:intergenic | 0.0% |
| !! | ATTATTATTGAAAGAACTAA+AGG | - | tig0012986:1454-1473 | Msa1353020:three_prime_UTR | 15.0% |
| !!! | TTGCTTTTTATATTTTACTT+TGG | - | tig0012986:1878-1897 | Msa1353020:CDS | 15.0% |
| !!! | TGCTTTTTATATTTTACTTT+GGG | - | tig0012986:1879-1898 | Msa1353020:CDS | 15.0% |
| !!! | CAAGTTAATGATTTTTTTAT+CGG | - | tig0012986:2479-2498 | Msa1353020:intron | 15.0% |
| !! | ATTATTATTGAAAGAACTAA+AGG | - | tig0012986:1454-1473 | Msa1353020:three_prime_UTR | 15.0% |
| !!! | TTGCTTTTTATATTTTACTT+TGG | - | tig0012986:1878-1897 | Msa1353020:CDS | 15.0% |
| !!! | TGCTTTTTATATTTTACTTT+GGG | - | tig0012986:1879-1898 | Msa1353020:CDS | 15.0% |
| !!! | CAAGTTAATGATTTTTTTAT+CGG | - | tig0012986:2479-2498 | Msa1353020:intron | 15.0% |
| !! | CAAATTATAAAAATCAGTTG+GGG | + | tig0012986:1943-1962 | Msa1353020:intergenic | 20.0% |
| !! | GCAAATTATAAAAATCAGTT+GGG | + | tig0012986:1944-1963 | Msa1353020:intergenic | 20.0% |
| !! | TGCAAATTATAAAAATCAGT+TGG | + | tig0012986:1945-1964 | Msa1353020:intergenic | 20.0% |
| !!! | TAGATGATGGAATAAAAATT+AGG | - | tig0012986:2381-2400 | Msa1353020:intron | 20.0% |
| !! | GATTATTATACAAGTAAATG+AGG | + | tig0012986:2616-2635 | Msa1353020:intergenic | 20.0% |
| !! | TAAATAAATTCAAACACAGA+CGG | + | tig0012986:2783-2802 | Msa1353020:intergenic | 20.0% |
| !! | TCTGTGTTTGAATTTATTTA+TGG | - | tig0012986:2783-2802 | Msa1353020:intron | 20.0% |
| !! | CAAATTATAAAAATCAGTTG+GGG | + | tig0012986:1943-1962 | Msa1353020:intergenic | 20.0% |
| !! | GCAAATTATAAAAATCAGTT+GGG | + | tig0012986:1944-1963 | Msa1353020:intergenic | 20.0% |
| !! | TGCAAATTATAAAAATCAGT+TGG | + | tig0012986:1945-1964 | Msa1353020:intergenic | 20.0% |
| !!! | TAGATGATGGAATAAAAATT+AGG | - | tig0012986:2381-2400 | Msa1353020:intron | 20.0% |
| !! | GATTATTATACAAGTAAATG+AGG | + | tig0012986:2616-2635 | Msa1353020:intergenic | 20.0% |
| !! | TAAATAAATTCAAACACAGA+CGG | + | tig0012986:2783-2802 | Msa1353020:intergenic | 20.0% |
| !! | TCTGTGTTTGAATTTATTTA+TGG | - | tig0012986:2783-2802 | Msa1353020:intron | 20.0% |
| ! | GTTCTTTCAATAATAATGTC+CGG | + | tig0012986:1451-1470 | Msa1353020:intergenic | 25.0% |
| ! | TTATTGAAAGAACTAAAGGT+TGG | - | tig0012986:1458-1477 | Msa1353020:three_prime_UTR | 25.0% |
| ! | TATTGAAAGAACTAAAGGTT+GGG | - | tig0012986:1459-1478 | Msa1353020:three_prime_UTR | 25.0% |
| ! | AACTTATACTAAAAGATGCT+TGG | - | tig0012986:1569-1588 | Msa1353020:intron | 25.0% |
| !! | ATATTCAAGTTAAGGAAGAT+GGG | - | tig0012986:1816-1835 | Msa1353020:intron | 25.0% |
| ! | GATAAATTTCATGTCAGTTA+TGG | - | tig0012986:2244-2263 | Msa1353020:intron | 25.0% |
| !!! | TAAATTGCTTTTCAACACAA+TGG | + | tig0012986:2305-2324 | Msa1353020:intergenic | 25.0% |
| ! | TTGAAAAGCAATTTAGATGT+TGG | - | tig0012986:2310-2329 | Msa1353020:CDS | 25.0% |
| ! | ATAGTTTCATAGATAGATGA+TGG | - | tig0012986:2368-2387 | Msa1353020:intron | 25.0% |
| !!! | GAAGTTCAATTGTTGTTTAT+TGG | - | tig0012986:2442-2461 | Msa1353020:intron | 25.0% |
| ! | TAACTATCAATATCTGTTTC+TGG | + | tig0012986:2584-2603 | Msa1353020:intergenic | 25.0% |
| ! | GTGTTTGAATTTATTTATGG+TGG | - | tig0012986:2786-2805 | Msa1353020:intron | 25.0% |
| ! | GTTCTTTCAATAATAATGTC+CGG | + | tig0012986:1451-1470 | Msa1353020:intergenic | 25.0% |
| ! | TTATTGAAAGAACTAAAGGT+TGG | - | tig0012986:1458-1477 | Msa1353020:three_prime_UTR | 25.0% |
| ! | TATTGAAAGAACTAAAGGTT+GGG | - | tig0012986:1459-1478 | Msa1353020:three_prime_UTR | 25.0% |
| ! | AACTTATACTAAAAGATGCT+TGG | - | tig0012986:1569-1588 | Msa1353020:intron | 25.0% |
| !! | ATATTCAAGTTAAGGAAGAT+GGG | - | tig0012986:1816-1835 | Msa1353020:intron | 25.0% |
| ! | GATAAATTTCATGTCAGTTA+TGG | - | tig0012986:2244-2263 | Msa1353020:intron | 25.0% |
| !!! | TAAATTGCTTTTCAACACAA+TGG | + | tig0012986:2305-2324 | Msa1353020:intergenic | 25.0% |
| ! | TTGAAAAGCAATTTAGATGT+TGG | - | tig0012986:2310-2329 | Msa1353020:CDS | 25.0% |
| ! | ATAGTTTCATAGATAGATGA+TGG | - | tig0012986:2368-2387 | Msa1353020:intron | 25.0% |
| !!! | GAAGTTCAATTGTTGTTTAT+TGG | - | tig0012986:2442-2461 | Msa1353020:intron | 25.0% |
| ! | TAACTATCAATATCTGTTTC+TGG | + | tig0012986:2584-2603 | Msa1353020:intergenic | 25.0% |
| ! | GTGTTTGAATTTATTTATGG+TGG | - | tig0012986:2786-2805 | Msa1353020:intron | 25.0% |
| !! | TTTCTGTGTTTTATTATCGC+CGG | - | tig0012986:1429-1448 | Msa1353020:three_prime_UTR | 30.0% |
| ! | TGCAACTCATATTCAAGTTA+AGG | - | tig0012986:1808-1827 | Msa1353020:intron | 30.0% |
| ! | CATATTCAAGTTAAGGAAGA+TGG | - | tig0012986:1815-1834 | Msa1353020:intron | 30.0% |
| ! | GGTAAAGTTACTTTGAGTAA+TGG | + | tig0012986:2189-2208 | Msa1353020:intergenic | 30.0% |
| AAATTTCATGTCAGTTATGG+TGG | - | tig0012986:2247-2266 | Msa1353020:intron | 30.0% | |
| AATTTCATGTCAGTTATGGT+GGG | - | tig0012986:2248-2267 | Msa1353020:intron | 30.0% | |
| ATTAAACAGATCAATGTCTC+AGG | - | tig0012986:2276-2295 | Msa1353020:intron | 30.0% | |
| ! | ACAGATATTGATAGTTACTG+AGG | - | tig0012986:2587-2606 | Msa1353020:intron | 30.0% |
| ! | CAGATATTGATAGTTACTGA+GGG | - | tig0012986:2588-2607 | Msa1353020:intron | 30.0% |
| !!! | CACATTTTAATTCCACAATC+TGG | + | tig0012986:2745-2764 | Msa1353020:intergenic | 30.0% |
| !! | TTTCTGTGTTTTATTATCGC+CGG | - | tig0012986:1429-1448 | Msa1353020:three_prime_UTR | 30.0% |
| ! | TGCAACTCATATTCAAGTTA+AGG | - | tig0012986:1808-1827 | Msa1353020:intron | 30.0% |
| ! | CATATTCAAGTTAAGGAAGA+TGG | - | tig0012986:1815-1834 | Msa1353020:intron | 30.0% |
| ! | GGTAAAGTTACTTTGAGTAA+TGG | + | tig0012986:2189-2208 | Msa1353020:intergenic | 30.0% |
| AAATTTCATGTCAGTTATGG+TGG | - | tig0012986:2247-2266 | Msa1353020:intron | 30.0% | |
| AATTTCATGTCAGTTATGGT+GGG | - | tig0012986:2248-2267 | Msa1353020:intron | 30.0% | |
| ATTAAACAGATCAATGTCTC+AGG | - | tig0012986:2276-2295 | Msa1353020:intron | 30.0% | |
| ! | ACAGATATTGATAGTTACTG+AGG | - | tig0012986:2587-2606 | Msa1353020:intron | 30.0% |
| ! | CAGATATTGATAGTTACTGA+GGG | - | tig0012986:2588-2607 | Msa1353020:intron | 30.0% |
| !!! | CACATTTTAATTCCACAATC+TGG | + | tig0012986:2745-2764 | Msa1353020:intergenic | 30.0% |
| AAGCATAAAGAATGCTAGAG+TGG | + | tig0012986:1410-1429 | Msa1353020:intergenic | 35.0% | |
| GTGCTCTTCAAAAAGAGTTA+AGG | + | tig0012986:1669-1688 | Msa1353020:intergenic | 35.0% | |
| AAATTGCAGCATGCAATATC+TGG | + | tig0012986:1725-1744 | Msa1353020:intergenic | 35.0% | |
| TCAAACACCTATCGCATATT+GGG | + | tig0012986:1975-1994 | Msa1353020:intergenic | 35.0% | |
| ATCAAACACCTATCGCATAT+TGG | + | tig0012986:1976-1995 | Msa1353020:intergenic | 35.0% | |
| ATTATTTCAACTAGCAACCC+TGG | + | tig0012986:2064-2083 | Msa1353020:intergenic | 35.0% | |
| TGTGAACATTGATGTTGAGT+CGG | - | tig0012986:2099-2118 | Msa1353020:intron | 35.0% | |
| ATTTCATGTCAGTTATGGTG+GGG | - | tig0012986:2249-2268 | Msa1353020:intron | 35.0% | |
| GTTTGATCATCCTTTATCAG+AGG | - | tig0012986:2332-2351 | Msa1353020:intron | 35.0% | |
| ATTACTTGCACAACAATCTC+AGG | - | tig0012986:2523-2542 | Msa1353020:intron | 35.0% | |
| ATAATATGGAGCTGACACTT+TGG | + | tig0012986:2670-2689 | Msa1353020:intergenic | 35.0% | |
| CCTCACAGGTGATAATAATA+TGG | + | tig0012986:2684-2703 | Msa1353020:intergenic | 35.0% | |
| CCATATTATTATCACCTGTG+AGG | - | tig0012986:2681-2700 | Msa1353020:intron | 35.0% | |
| AAGCATAAAGAATGCTAGAG+TGG | + | tig0012986:1410-1429 | Msa1353020:intergenic | 35.0% | |
| GTGCTCTTCAAAAAGAGTTA+AGG | + | tig0012986:1669-1688 | Msa1353020:intergenic | 35.0% | |
| AAATTGCAGCATGCAATATC+TGG | + | tig0012986:1725-1744 | Msa1353020:intergenic | 35.0% | |
| TCAAACACCTATCGCATATT+GGG | + | tig0012986:1975-1994 | Msa1353020:intergenic | 35.0% | |
| ATCAAACACCTATCGCATAT+TGG | + | tig0012986:1976-1995 | Msa1353020:intergenic | 35.0% | |
| ATTATTTCAACTAGCAACCC+TGG | + | tig0012986:2064-2083 | Msa1353020:intergenic | 35.0% | |
| TGTGAACATTGATGTTGAGT+CGG | - | tig0012986:2099-2118 | Msa1353020:intron | 35.0% | |
| ATTTCATGTCAGTTATGGTG+GGG | - | tig0012986:2249-2268 | Msa1353020:intron | 35.0% | |
| GTTTGATCATCCTTTATCAG+AGG | - | tig0012986:2332-2351 | Msa1353020:intron | 35.0% | |
| ATTACTTGCACAACAATCTC+AGG | - | tig0012986:2523-2542 | Msa1353020:intron | 35.0% | |
| ATAATATGGAGCTGACACTT+TGG | + | tig0012986:2670-2689 | Msa1353020:intergenic | 35.0% | |
| CCTCACAGGTGATAATAATA+TGG | + | tig0012986:2684-2703 | Msa1353020:intergenic | 35.0% | |
| CCATATTATTATCACCTGTG+AGG | - | tig0012986:2681-2700 | Msa1353020:intron | 35.0% | |
| TTGGGCTGCTTAATTGATAC+TGG | - | tig0012986:1477-1496 | Msa1353020:three_prime_UTR | 40.0% | |
| ATAGATGCAAACCTCCTCTT+GGG | + | tig0012986:1842-1861 | Msa1353020:intergenic | 40.0% | |
| ATTGCAACCCAATATGCGAT+AGG | - | tig0012986:1965-1984 | Msa1353020:intron | 40.0% | |
| AACTGAAAGTCAGAGACAGA+CGG | + | tig0012986:2165-2184 | Msa1353020:intergenic | 40.0% | |
| ! | TGCACAACAATCTCAGGTTT+TGG | - | tig0012986:2529-2548 | Msa1353020:intron | 40.0% |
| TTGGGCTGCTTAATTGATAC+TGG | - | tig0012986:1477-1496 | Msa1353020:three_prime_UTR | 40.0% | |
| ATAGATGCAAACCTCCTCTT+GGG | + | tig0012986:1842-1861 | Msa1353020:intergenic | 40.0% | |
| ATTGCAACCCAATATGCGAT+AGG | - | tig0012986:1965-1984 | Msa1353020:intron | 40.0% | |
| AACTGAAAGTCAGAGACAGA+CGG | + | tig0012986:2165-2184 | Msa1353020:intergenic | 40.0% | |
| ! | TGCACAACAATCTCAGGTTT+TGG | - | tig0012986:2529-2548 | Msa1353020:intron | 40.0% |
| CATAGATGCAAACCTCCTCT+TGG | + | tig0012986:1843-1862 | Msa1353020:intergenic | 45.0% | |
| TGTACATCGAGACAGCAGAT+AGG | - | tig0012986:2038-2057 | Msa1353020:CDS | 45.0% | |
| CCTGCAGAGCGAAAAAAAGT+GGG | + | tig0012986:2210-2229 | Msa1353020:intergenic | 45.0% | |
| !!! | CCACTTTTTTTCGCTCTGCA+GGG | - | tig0012986:2208-2227 | Msa1353020:intron | 45.0% |
| TCTGCAGGGTTTGATTGCTA+AGG | - | tig0012986:2222-2241 | Msa1353020:intron | 45.0% | |
| CACTCTACAGCCTCTGATAA+AGG | + | tig0012986:2345-2364 | Msa1353020:intergenic | 45.0% | |
| !! | CAATATCTGTTTCTGGCGTC+CGG | + | tig0012986:2577-2596 | Msa1353020:intergenic | 45.0% |
| GCTTTACTGCTTCCAGATTG+TGG | - | tig0012986:2730-2749 | Msa1353020:intron | 45.0% | |
| CATAGATGCAAACCTCCTCT+TGG | + | tig0012986:1843-1862 | Msa1353020:intergenic | 45.0% | |
| TGTACATCGAGACAGCAGAT+AGG | - | tig0012986:2038-2057 | Msa1353020:CDS | 45.0% | |
| CCTGCAGAGCGAAAAAAAGT+GGG | + | tig0012986:2210-2229 | Msa1353020:intergenic | 45.0% | |
| !!! | CCACTTTTTTTCGCTCTGCA+GGG | - | tig0012986:2208-2227 | Msa1353020:intron | 45.0% |
| TCTGCAGGGTTTGATTGCTA+AGG | - | tig0012986:2222-2241 | Msa1353020:intron | 45.0% | |
| CACTCTACAGCCTCTGATAA+AGG | + | tig0012986:2345-2364 | Msa1353020:intergenic | 45.0% | |
| !! | CAATATCTGTTTCTGGCGTC+CGG | + | tig0012986:2577-2596 | Msa1353020:intergenic | 45.0% |
| GCTTTACTGCTTCCAGATTG+TGG | - | tig0012986:2730-2749 | Msa1353020:intron | 45.0% | |
| !!! | TTTTATTGTTAATATTTAAA+TGG | - | tig0012986:1362-1381 | Msa1353020:three_prime_UTR | 5.0% |
| !!! | TTTTATTGTTAATATTTAAA+TGG | - | tig0012986:1362-1381 | Msa1353020:three_prime_UTR | 5.0% |
| TTAAGGAAGATGGGCCCAAG+AGG | - | tig0012986:1825-1844 | Msa1353020:intron | 50.0% | |
| !!! | CCCACTTTTTTTCGCTCTGC+AGG | - | tig0012986:2207-2226 | Msa1353020:intron | 50.0% |
| CCCTGCAGAGCGAAAAAAAG+TGG | + | tig0012986:2211-2230 | Msa1353020:intergenic | 50.0% | |
| ACTGTCTGCGTTACTACCTC+CGG | - | tig0012986:2555-2574 | Msa1353020:intron | 50.0% | |
| ATGTGAGATGTGTGCCTCAC+AGG | + | tig0012986:2698-2717 | Msa1353020:intergenic | 50.0% | |
| TTAAGGAAGATGGGCCCAAG+AGG | - | tig0012986:1825-1844 | Msa1353020:intron | 50.0% | |
| !!! | CCCACTTTTTTTCGCTCTGC+AGG | - | tig0012986:2207-2226 | Msa1353020:intron | 50.0% |
| CCCTGCAGAGCGAAAAAAAG+TGG | + | tig0012986:2211-2230 | Msa1353020:intergenic | 50.0% | |
| ACTGTCTGCGTTACTACCTC+CGG | - | tig0012986:2555-2574 | Msa1353020:intron | 50.0% | |
| ATGTGAGATGTGTGCCTCAC+AGG | + | tig0012986:2698-2717 | Msa1353020:intergenic | 50.0% | |
| ATCGAGACAGCAGATAGGCC+AGG | - | tig0012986:2043-2062 | Msa1353020:CDS | 55.0% | |
| TCGAGACAGCAGATAGGCCA+GGG | - | tig0012986:2044-2063 | Msa1353020:CDS | 55.0% | |
| GTCGGCTGAGATCGATACAG+AGG | - | tig0012986:2117-2136 | Msa1353020:intron | 55.0% | |
| AGTCAGAGACAGACGGAAGC+AGG | + | tig0012986:2158-2177 | Msa1353020:intergenic | 55.0% | |
| !! | TATCTGTTTCTGGCGTCCGG+AGG | + | tig0012986:2574-2593 | Msa1353020:intergenic | 55.0% |
| ATCGAGACAGCAGATAGGCC+AGG | - | tig0012986:2043-2062 | Msa1353020:CDS | 55.0% | |
| TCGAGACAGCAGATAGGCCA+GGG | - | tig0012986:2044-2063 | Msa1353020:CDS | 55.0% | |
| GTCGGCTGAGATCGATACAG+AGG | - | tig0012986:2117-2136 | Msa1353020:intron | 55.0% | |
| AGTCAGAGACAGACGGAAGC+AGG | + | tig0012986:2158-2177 | Msa1353020:intergenic | 55.0% | |
| !! | TATCTGTTTCTGGCGTCCGG+AGG | + | tig0012986:2574-2593 | Msa1353020:intergenic | 55.0% |
| AGGAAGATGGGCCCAAGAGG+AGG | - | tig0012986:1828-1847 | Msa1353020:intron | 60.0% | |
| CAGACGGAAGCAGGACAGAG+AGG | + | tig0012986:2149-2168 | Msa1353020:intergenic | 60.0% | |
| AGGAAGATGGGCCCAAGAGG+AGG | - | tig0012986:1828-1847 | Msa1353020:intron | 60.0% | |
| CAGACGGAAGCAGGACAGAG+AGG | + | tig0012986:2149-2168 | Msa1353020:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012986 | gene | 1319 | 2810 | 1319 | ID=Msa1353020;Name=Msa1353020 |
| tig0012986 | mRNA | 1319 | 2810 | 1319 | ID=Msa1353020-mRNA-1;Parent=Msa1353020;Name=Msa1353020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.6|0.8|1|1|5|203|99 |
| tig0012986 | exon | 1319 | 1584 | 1319 | ID=Msa1353020-mRNA-1:exon:8462;Parent=Msa1353020-mRNA-1 |
| tig0012986 | exon | 1832 | 1900 | 1832 | ID=Msa1353020-mRNA-1:exon:8461;Parent=Msa1353020-mRNA-1 |
| tig0012986 | exon | 1991 | 2096 | 1991 | ID=Msa1353020-mRNA-1:exon:8460;Parent=Msa1353020-mRNA-1 |
| tig0012986 | exon | 2280 | 2335 | 2280 | ID=Msa1353020-mRNA-1:exon:8459;Parent=Msa1353020-mRNA-1 |
| tig0012986 | exon | 2805 | 2810 | 2805 | ID=Msa1353020-mRNA-1:exon:8458;Parent=Msa1353020-mRNA-1 |
| tig0012986 | CDS | 2805 | 2810 | 2805 | ID=Msa1353020-mRNA-1:cds;Parent=Msa1353020-mRNA-1 |
| tig0012986 | CDS | 2280 | 2335 | 2280 | ID=Msa1353020-mRNA-1:cds;Parent=Msa1353020-mRNA-1 |
| tig0012986 | CDS | 1991 | 2096 | 1991 | ID=Msa1353020-mRNA-1:cds;Parent=Msa1353020-mRNA-1 |
| tig0012986 | CDS | 1832 | 1900 | 1832 | ID=Msa1353020-mRNA-1:cds;Parent=Msa1353020-mRNA-1 |
| tig0012986 | CDS | 1522 | 1584 | 1522 | ID=Msa1353020-mRNA-1:cds;Parent=Msa1353020-mRNA-1 |
| tig0012986 | three_prime_UTR | 1319 | 1521 | 1319 | ID=Msa1353020-mRNA-1:three_prime_utr;Parent=Msa1353020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
