Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369720 | XP_013470280.1 | 96.429 | 280 | 10 | 0 | 1 | 280 | 1 | 280 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369720 | sp|Q9LZ23|ACR12_ARATH | 77.593 | 241 | 47 | 2 | 44 | 280 | 64 | 301 | 2.18e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369720 | A0A072VSB7 | 96.429 | 280 | 10 | 0 | 1 | 280 | 1 | 280 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025340 | Msa1369720 | -0.801620 | 8.263539e-49 | -8.615850e-47 |
| Msa0044120 | Msa1369720 | 0.992530 | 7.563712e-194 | -8.615850e-47 |
| Msa0078160 | Msa1369720 | -0.809473 | 1.859464e-50 | -8.615850e-47 |
| Msa1349420 | Msa1369720 | 0.800704 | 1.271766e-48 | -8.615850e-47 |
| Msa1353020 | Msa1369720 | 0.868870 | 4.733994e-66 | -8.615850e-47 |
| Msa1364690 | Msa1369720 | 0.823118 | 1.644836e-53 | -8.615850e-47 |
| Msa1369720 | Msa1378020 | 0.828048 | 1.116121e-54 | -8.615850e-47 |
| Msa1369720 | Msa1408320 | 0.830606 | 2.670878e-55 | -8.615850e-47 |
| Msa1369720 | Msa1437590 | 0.835963 | 1.235463e-56 | -8.615850e-47 |
| Msa1369720 | Msa1447140 | 0.970160 | 3.391152e-131 | -8.615850e-47 |
| Msa1369720 | Msa1463640 | 0.804642 | 1.958851e-49 | -8.615850e-47 |
| Msa0655370 | Msa1369720 | 0.807349 | 5.279042e-50 | -8.615850e-47 |
| Msa0701560 | Msa1369720 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
| Msa0749140 | Msa1369720 | 0.827104 | 1.880661e-54 | -8.615850e-47 |
| Msa0750790 | Msa1369720 | 0.801613 | 8.288257e-49 | -8.615850e-47 |
| Msa0792890 | Msa1369720 | 0.827198 | 1.786232e-54 | -8.615850e-47 |
| Msa0799150 | Msa1369720 | -0.846640 | 1.913031e-59 | -8.615850e-47 |
| Msa0813610 | Msa1369720 | 0.804576 | 2.022048e-49 | -8.615850e-47 |
| Msa0822680 | Msa1369720 | -0.805656 | 1.201452e-49 | -8.615850e-47 |
| Msa0828910 | Msa1369720 | 0.828815 | 7.290322e-55 | -8.615850e-47 |
| Msa0168470 | Msa1369720 | -0.802880 | 4.547840e-49 | -8.615850e-47 |
| Msa0183730 | Msa1369720 | 0.947472 | 6.297636e-106 | -8.615850e-47 |
| Msa0185540 | Msa1369720 | -0.818153 | 2.273749e-52 | -8.615850e-47 |
| Msa0191180 | Msa1369720 | -0.804600 | 1.998274e-49 | -8.615850e-47 |
| Msa0191470 | Msa1369720 | 0.813381 | 2.634174e-51 | -8.615850e-47 |
| Msa1262320 | Msa1369720 | 0.836233 | 1.055157e-56 | -8.615850e-47 |
| Msa0369890 | Msa1369720 | 0.805879 | 1.078795e-49 | -8.615850e-47 |
| Msa0385870 | Msa1369720 | -0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa0417060 | Msa1369720 | 0.811374 | 7.229828e-51 | -8.615850e-47 |
| Msa0433090 | Msa1369720 | 0.824889 | 6.320885e-54 | -8.615850e-47 |
| Msa0460950 | Msa1369720 | 0.822061 | 2.896773e-53 | -8.615850e-47 |
| Msa0476140 | Msa1369720 | -0.800359 | 1.495286e-48 | -8.615850e-47 |
| Msa0985380 | Msa1369720 | 0.832425 | 9.520687e-56 | -8.615850e-47 |
| Msa1031060 | Msa1369720 | 0.801937 | 7.111354e-49 | -8.615850e-47 |
| Msa1040330 | Msa1369720 | 0.833645 | 4.735846e-56 | -8.615850e-47 |
| Msa1085820 | Msa1369720 | 0.840126 | 1.049283e-57 | -8.615850e-47 |
| Msa0335050 | Msa1369720 | 0.844072 | 9.482149e-59 | -8.615850e-47 |
| Msa0355990 | Msa1369720 | -0.810192 | 1.302297e-50 | -8.615850e-47 |
| Msa1127940 | Msa1369720 | 0.802824 | 4.669292e-49 | -8.615850e-47 |
| Msa1137750 | Msa1369720 | 0.807942 | 3.950873e-50 | -8.615850e-47 |
| Msa1165860 | Msa1369720 | 0.812945 | 3.283012e-51 | -8.615850e-47 |
| Msa1190320 | Msa1369720 | -0.829137 | 6.091195e-55 | -8.615850e-47 |
| Msa1191270 | Msa1369720 | 0.807360 | 5.249708e-50 | -8.615850e-47 |
| Msa1202220 | Msa1369720 | -0.806869 | 6.672183e-50 | -8.615850e-47 |
| Msa0485290 | Msa1369720 | 0.810534 | 1.099002e-50 | -8.615850e-47 |
| Msa0501540 | Msa1369720 | -0.807848 | 4.135413e-50 | -8.615850e-47 |
| Msa0524710 | Msa1369720 | 0.835552 | 1.569776e-56 | -8.615850e-47 |
| Msa0572700 | Msa1369720 | 0.805160 | 1.526098e-49 | -8.615850e-47 |
| Msa0597800 | Msa1369720 | 0.840632 | 7.735827e-58 | -8.615850e-47 |
| Msa0597820 | Msa1369720 | 0.823501 | 1.338838e-53 | -8.615850e-47 |
| Msa0910560 | Msa1369720 | 0.832237 | 1.060338e-55 | -8.615850e-47 |
| Msa0910590 | Msa1369720 | 0.834904 | 2.287986e-56 | -8.615850e-47 |
| Msa0948430 | Msa1369720 | 0.815901 | 7.288372e-52 | -8.615850e-47 |
| Msa0974410 | Msa1369720 | -0.800164 | 1.638319e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369720 | MtrunA17_Chr1g0210741 | 96.429 | 280 | 10 | 0 | 1 | 280 | 1 | 280 | 0.0 | 546 |
| Msa1369720 | MtrunA17_Chr2g0333871 | 61.792 | 212 | 81 | 0 | 69 | 280 | 79 | 290 | 1.82e-96 | 285 |
| Msa1369720 | MtrunA17_Chr4g0001421 | 61.792 | 212 | 81 | 0 | 69 | 280 | 82 | 293 | 2.82e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369720 | AT5G04740.1 | 77.593 | 241 | 47 | 2 | 44 | 280 | 64 | 301 | 2.22e-133 | 379 |
| Msa1369720 | AT1G16880.1 | 58.986 | 217 | 89 | 0 | 64 | 280 | 74 | 290 | 5.20e-94 | 279 |
| Msa1369720 | AT5G04740.2 | 84.034 | 119 | 19 | 0 | 162 | 280 | 82 | 200 | 1.82e-70 | 216 |
| Msa1369720 | AT1G16880.2 | 59.829 | 117 | 47 | 0 | 64 | 180 | 74 | 190 | 1.75e-46 | 155 |
Find 90 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAAGCATTAAAAGATT+TGG | 0.224631 | tig0018891:-35713 | Msa1369720:CDS |
| AGGATTGTCTCACTTGTTCT+TGG | 0.248877 | tig0018891:+38245 | None:intergenic |
| TAACTATCAATATCTGTTTC+TGG | 0.249349 | tig0018891:+32575 | None:intergenic |
| GTGGGACACGAAATCAAATT+TGG | 0.301019 | tig0018891:-38520 | None:intergenic |
| ATGAAAGCATTAAAAGATTT+GGG | 0.302504 | tig0018891:-35712 | Msa1369720:CDS |
| TCTGTGTTTGAATTTATTTA+TGG | 0.310981 | tig0018891:-32373 | Msa1369720:three_prime_UTR |
| TAATTCTTACTGCAGATATC+TGG | 0.325647 | tig0018891:-36561 | Msa1369720:intron |
| CGAATGCTCTCTAACATATC+AGG | 0.337635 | tig0018891:+34966 | None:intergenic |
| TGCAACTCATATTCAAGTTA+AGG | 0.354573 | tig0018891:-33348 | Msa1369720:CDS |
| CTGCAATAGATTGTTGATAA+TGG | 0.357828 | tig0018891:+34938 | None:intergenic |
| GTGACTCAGTTCATTTGTTC+CGG | 0.369218 | tig0018891:-38438 | Msa1369720:five_prime_UTR |
| CCTCACAGGTGATAATAATA+TGG | 0.372412 | tig0018891:+32475 | None:intergenic |
| GATCGGAAAGGTTGGTGGTT+TGG | 0.376497 | tig0018891:+38325 | None:intergenic |
| GGGTGAAGTGTTTGGCATAA+AGG | 0.378690 | tig0018891:-34691 | Msa1369720:CDS |
| CATATTCAAGTTAAGGAAGA+TGG | 0.394527 | tig0018891:-33341 | Msa1369720:CDS |
| GATAAATTTCATGTCAGTTA+TGG | 0.404791 | tig0018891:-32912 | Msa1369720:CDS |
| CTTGTTCTTGGCGGAGGAAG+AGG | 0.411084 | tig0018891:+38257 | None:intergenic |
| CTAGCCCTGGGTGAAGTGTT+TGG | 0.426026 | tig0018891:-34699 | Msa1369720:CDS |
| ACAATTGTGCAACTTAGCTT+TGG | 0.428631 | tig0018891:-36474 | Msa1369720:CDS |
| CATAGATGCAAACCTCCTCT+TGG | 0.437658 | tig0018891:+33316 | None:intergenic |
| CTTAGCTTTGGTGATCGTCT+TGG | 0.437985 | tig0018891:-36462 | Msa1369720:CDS |
| TGGTGTACTCTCTGCGTAAC+CGG | 0.440630 | tig0018891:+38419 | None:intergenic |
| ACCCAGGGCTAGTTGTTCAC+TGG | 0.444688 | tig0018891:+34710 | None:intergenic |
| AGCATTAAAAGATTTGGGAT+TGG | 0.447652 | tig0018891:-35707 | Msa1369720:CDS |
| CAATATCTGTTTCTGGCGTC+CGG | 0.467240 | tig0018891:+32582 | None:intergenic |
| GTCTCACTTGTTCTTGGCGG+AGG | 0.468711 | tig0018891:+38251 | None:intergenic |
| TGATATATTGTCAGAGACAC+TGG | 0.474998 | tig0018891:-35005 | Msa1369720:intron |
| ATTGTCTCACTTGTTCTTGG+CGG | 0.475717 | tig0018891:+38248 | None:intergenic |
| GTGTTTGAATTTATTTATGG+TGG | 0.477827 | tig0018891:-32370 | Msa1369720:three_prime_UTR |
| TGCAGTAGATTCAGCTTCAC+TGG | 0.486587 | tig0018891:-36949 | Msa1369720:intron |
| AAATTTCATGTCAGTTATGG+TGG | 0.491300 | tig0018891:-32909 | Msa1369720:CDS |
| GTCCAGTGAACAACTAGCCC+TGG | 0.492569 | tig0018891:-34712 | Msa1369720:CDS |
| TTTGGGATTGGATGTTTCAA+AGG | 0.494758 | tig0018891:-35695 | Msa1369720:CDS |
| TCTTGATCTATCAGTAGTAT+TGG | 0.502060 | tig0018891:+36513 | None:intergenic |
| ATAGATGCAAACCTCCTCTT+GGG | 0.508203 | tig0018891:+33317 | None:intergenic |
| GATTATTATACAAGTAAATG+AGG | 0.509086 | tig0018891:+32543 | None:intergenic |
| TTGGGATTGGATGTTTCAAA+GGG | 0.510420 | tig0018891:-35694 | Msa1369720:CDS |
| GTTGGTGGTTTGGACGGAGA+AGG | 0.514145 | tig0018891:+38335 | None:intergenic |
| ATTAAACAGATCAATGTCTC+AGG | 0.515343 | tig0018891:-32880 | Msa1369720:intron |
| TCTATCAGTAGTATTGGCAT+TGG | 0.516810 | tig0018891:+36519 | None:intergenic |
| CGGAGGAAGAGGAACGGAAG+GGG | 0.520724 | tig0018891:+38268 | None:intergenic |
| ATGTGAGATGTGTGCCTCAC+AGG | 0.522074 | tig0018891:+32461 | None:intergenic |
| ATCGAGACAGCAGATAGGCC+AGG | 0.530479 | tig0018891:-33113 | Msa1369720:CDS |
| CATAAAGGCTCCAGAAAAGA+AGG | 0.531380 | tig0018891:-34676 | Msa1369720:intron |
| AATTTCATGTCAGTTATGGT+GGG | 0.532815 | tig0018891:-32908 | Msa1369720:CDS |
| AAGAAAGTGTGAGAGGAAAG+AGG | 0.537675 | tig0018891:+38291 | None:intergenic |
| GGCGGAGGAAGAGGAACGGA+AGG | 0.540883 | tig0018891:+38266 | None:intergenic |
| GGAGAGCGGATCGGAAAGGT+TGG | 0.545261 | tig0018891:+38317 | None:intergenic |
| GGAAAGGTTGGTGGTTTGGA+CGG | 0.553350 | tig0018891:+38329 | None:intergenic |
| ATAATATGGAGCTGACACTT+TGG | 0.554267 | tig0018891:+32489 | None:intergenic |
| AGTGTGAGAGGAAAGAGGAA+AGG | 0.557002 | tig0018891:+38296 | None:intergenic |
| ATATTCAAGTTAAGGAAGAT+GGG | 0.558978 | tig0018891:-33340 | Msa1369720:CDS |
| ATTATTTCAACTAGCAACCC+TGG | 0.562653 | tig0018891:+33095 | None:intergenic |
| AAGGGAACTGTCTCCACTGA+GGG | 0.564408 | tig0018891:-35676 | Msa1369720:CDS |
| GAGCGGATCGGAAAGGTTGG+TGG | 0.564465 | tig0018891:+38320 | None:intergenic |
| TCTGCAGGGTTTGATTGCTA+AGG | 0.568190 | tig0018891:-32934 | Msa1369720:intron |
| TGTACATCGAGACAGCAGAT+AGG | 0.569651 | tig0018891:-33118 | Msa1369720:CDS |
| TTGCTTCACTGGTCCCTCAG+TGG | 0.572490 | tig0018891:+35663 | None:intergenic |
| GAATGCATTGGTCAAAGCCA+TGG | 0.578850 | tig0018891:+38368 | None:intergenic |
| ACTGTCTGCGTTACTACCTC+CGG | 0.580821 | tig0018891:-32601 | Msa1369720:CDS |
| GCATTACTGCTACCAGATTG+TGG | 0.581070 | tig0018891:-32426 | Msa1369720:three_prime_UTR |
| GCGGAGGAAGAGGAACGGAA+GGG | 0.583061 | tig0018891:+38267 | None:intergenic |
| TCCAGTGAACAACTAGCCCT+GGG | 0.584632 | tig0018891:-34711 | Msa1369720:CDS |
| ATTTCATGTCAGTTATGGTG+GGG | 0.585354 | tig0018891:-32907 | Msa1369720:CDS |
| TCGAGACAGCAGATAGGCCA+GGG | 0.587797 | tig0018891:-33112 | Msa1369720:CDS |
| GAAGGGGAAGAAAGTGTGAG+AGG | 0.588589 | tig0018891:+38284 | None:intergenic |
| GGAAGGAGCGATGAATGCAT+TGG | 0.595269 | tig0018891:+38356 | None:intergenic |
| GTGGTTTGGACGGAGAAGGA+AGG | 0.600105 | tig0018891:+38339 | None:intergenic |
| AGGAAGATGGGCCCAAGAGG+AGG | 0.600783 | tig0018891:-33328 | Msa1369720:intron |
| GAAAGGAGAGCGGATCGGAA+AGG | 0.603753 | tig0018891:+38313 | None:intergenic |
| TCTTGGAGCTCTTCTTGACA+CGG | 0.610014 | tig0018891:-36445 | Msa1369720:intron |
| AAGAGGAAAGGAGAGCGGAT+CGG | 0.611115 | tig0018891:+38308 | None:intergenic |
| CGTCATCATCATCTCCGCCA+TGG | 0.611932 | tig0018891:-38385 | Msa1369720:exon |
| ATGATGACGACGATGGAAGT+TGG | 0.613337 | tig0018891:+38399 | None:intergenic |
| TAAATAAATTCAAACACAGA+CGG | 0.614280 | tig0018891:+32376 | None:intergenic |
| TTAAGGAAGATGGGCCCAAG+AGG | 0.615605 | tig0018891:-33331 | Msa1369720:CDS |
| ACAGATATTGATAGTTACTG+AGG | 0.615661 | tig0018891:-32569 | Msa1369720:exon |
| TATGCCAAACACTTCACCCA+GGG | 0.626733 | tig0018891:+34695 | None:intergenic |
| TATCTGTTTCTGGCGTCCGG+AGG | 0.629851 | tig0018891:+32585 | None:intergenic |
| TTATGCCAAACACTTCACCC+AGG | 0.646264 | tig0018891:+34694 | None:intergenic |
| GATATATTGTCAGAGACACT+GGG | 0.648692 | tig0018891:-35004 | Msa1369720:intron |
| GGAGATGATGATGACGACGA+TGG | 0.652386 | tig0018891:+38392 | None:intergenic |
| TGTGAACATTGATGTTGAGT+CGG | 0.660513 | tig0018891:-33057 | Msa1369720:CDS |
| CAGATATTGATAGTTACTGA+GGG | 0.663496 | tig0018891:-32568 | Msa1369720:exon |
| GAGGAAAGAGGAAAGGAGAG+CGG | 0.672416 | tig0018891:+38303 | None:intergenic |
| TCTTGGCGGAGGAAGAGGAA+CGG | 0.684378 | tig0018891:+38262 | None:intergenic |
| GTCGGCTGAGATCGATACAG+AGG | 0.702999 | tig0018891:-33039 | Msa1369720:intron |
| AAAGGGAACTGTCTCCACTG+AGG | 0.707401 | tig0018891:-35677 | Msa1369720:CDS |
| TGCATTGGTCAAAGCCATGG+CGG | 0.711267 | tig0018891:+38371 | None:intergenic |
| CCATATTATTATCACCTGTG+AGG | 0.728472 | tig0018891:-32475 | Msa1369720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAAAAAATAAAA+CGG | + | tig0018891:37072-37091 | None:intergenic | 0.0% |
| !! | AATCAAAAAAAAAAAAAAGT+TGG | + | tig0018891:32665-32684 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTTTTGATTT+AGG | - | tig0018891:32666-32685 | Msa1369720:intron | 10.0% |
| !! | AAAAATATACTTATGAAATA+TGG | + | tig0018891:33171-33190 | None:intergenic | 10.0% |
| !!! | AATAAATAAAGGTATAATAA+TGG | - | tig0018891:33640-33659 | Msa1369720:intron | 10.0% |
| !! | ATAAATGTTAATTATTACAA+AGG | - | tig0018891:35498-35517 | Msa1369720:intron | 10.0% |
| !!! | TATAATTATTTTACAGAATA+AGG | + | tig0018891:36621-36640 | None:intergenic | 10.0% |
| !!! | TTAATTATTTGATATTTTTG+TGG | - | tig0018891:36688-36707 | Msa1369720:intron | 10.0% |
| !! | AAAAATAATAAATACTGCAT+TGG | - | tig0018891:33665-33684 | Msa1369720:intron | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAA+TGG | - | tig0018891:33706-33725 | Msa1369720:intron | 15.0% |
| !!! | ATACATATCATTACTATTTT+CGG | - | tig0018891:34034-34053 | Msa1369720:intron | 15.0% |
| !! | ATACACTTAGTAATAATATA+GGG | + | tig0018891:34840-34859 | None:intergenic | 15.0% |
| !! | AATACACTTAGTAATAATAT+AGG | + | tig0018891:34841-34860 | None:intergenic | 15.0% |
| !! | AATTTAATAATAATTGCAAC+TGG | + | tig0018891:35696-35715 | None:intergenic | 15.0% |
| !! | TAGGAAAAATTGAAAATTAA+GGG | + | tig0018891:36115-36134 | None:intergenic | 15.0% |
| !!! | TATATTTATATATTTTGTCC+AGG | - | tig0018891:36148-36167 | Msa1369720:intron | 15.0% |
| !!! | GAATATACGTTATTTATTTT+AGG | - | tig0018891:36279-36298 | Msa1369720:intron | 15.0% |
| !! | ATTATTATTGAAAGAACTAA+AGG | - | tig0018891:37178-37197 | Msa1369720:intron | 15.0% |
| !!! | TTGCTTTTTATATTTTACTT+TGG | - | tig0018891:37606-37625 | Msa1369720:intron | 15.0% |
| !!! | TGCTTTTTATATTTTACTTT+GGG | - | tig0018891:37607-37626 | Msa1369720:intron | 15.0% |
| !!! | CAAGTTAATGATTTTTTTAT+CGG | - | tig0018891:38207-38226 | Msa1369720:intron | 15.0% |
| !! | CAAAAAAAAAAAAAAGTTGG+AGG | + | tig0018891:32662-32681 | None:intergenic | 20.0% |
| !! | TTTGAGAACTTATGAAAATA+AGG | + | tig0018891:33027-33046 | None:intergenic | 20.0% |
| !! | AATTAAGCTGTTTATTCAAA+CGG | - | tig0018891:33132-33151 | Msa1369720:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | - | tig0018891:33545-33564 | Msa1369720:intron | 20.0% |
| !! | GGATGAAATTCAATAAATAA+AGG | - | tig0018891:33629-33648 | Msa1369720:intron | 20.0% |
| !! | TGCAATAAAGTGATAATAAT+GGG | + | tig0018891:33979-33998 | None:intergenic | 20.0% |
| !!! | ATTTCACTTCTTTTCATTTT+GGG | - | tig0018891:34001-34020 | Msa1369720:intron | 20.0% |
| !!! | TACATATCATTACTATTTTC+GGG | - | tig0018891:34035-34054 | Msa1369720:intron | 20.0% |
| !! | AAATATTGTACATAAAAGCA+AGG | + | tig0018891:34285-34304 | None:intergenic | 20.0% |
| !!! | TTTTTTAATTGATGGTACAT+AGG | - | tig0018891:34645-34664 | Msa1369720:intron | 20.0% |
| !!! | AATGATACTATTCTCATTTT+GGG | - | tig0018891:34750-34769 | Msa1369720:intron | 20.0% |
| !! | TACACTTAGTAATAATATAG+GGG | + | tig0018891:34839-34858 | None:intergenic | 20.0% |
| !! | ATGATATTATCTCTTTATGA+AGG | - | tig0018891:34901-34920 | Msa1369720:intron | 20.0% |
| !! | AACATAATAAAACAAACCTT+CGG | + | tig0018891:34928-34947 | None:intergenic | 20.0% |
| !!! | ATGAAAGCATTAAAAGATTT+GGG | - | tig0018891:35172-35191 | Msa1369720:intron | 20.0% |
| !! | TAAGAAATACAGTTACTTAT+TGG | - | tig0018891:35717-35736 | Msa1369720:intron | 20.0% |
| !! | TATAAAAGTTGCTAATTACA+AGG | + | tig0018891:36045-36064 | None:intergenic | 20.0% |
| !! | ATATTTATAAAGAAAACTCG+TGG | + | tig0018891:36069-36088 | None:intergenic | 20.0% |
| !! | GTAGGAAAAATTGAAAATTA+AGG | + | tig0018891:36116-36135 | None:intergenic | 20.0% |
| !! | TTTAGGAAATAAAAAATGCA+AGG | + | tig0018891:36257-36276 | None:intergenic | 20.0% |
| !! | AAATAACGTATATTCTGTTT+AGG | + | tig0018891:36274-36293 | None:intergenic | 20.0% |
| !! | TTTATGAACACTTAGAATTT+GGG | + | tig0018891:36430-36449 | None:intergenic | 20.0% |
| !! | ATTTATGAACACTTAGAATT+TGG | + | tig0018891:36431-36450 | None:intergenic | 20.0% |
| !!! | ATAGTGTTGTTTGTTTATTT+TGG | - | tig0018891:36638-36657 | Msa1369720:intron | 20.0% |
| !!! | TAGTGTTGTTTGTTTATTTT+GGG | - | tig0018891:36639-36658 | Msa1369720:intron | 20.0% |
| !!! | TTCAATTTTTAAGTGGAATA+TGG | + | tig0018891:36741-36760 | None:intergenic | 20.0% |
| !! | CAAATTATAAAAATCAGTTG+GGG | + | tig0018891:37671-37690 | None:intergenic | 20.0% |
| !! | GCAAATTATAAAAATCAGTT+GGG | + | tig0018891:37672-37691 | None:intergenic | 20.0% |
| !! | TGCAAATTATAAAAATCAGT+TGG | + | tig0018891:37673-37692 | None:intergenic | 20.0% |
| !!! | TAGATGATGGAATAAAAATT+AGG | - | tig0018891:38109-38128 | Msa1369720:intron | 20.0% |
| !! | GATTATTATACAAGTAAATG+AGG | + | tig0018891:38344-38363 | None:intergenic | 20.0% |
| !! | TAAATAAATTCAAACACAGA+CGG | + | tig0018891:38511-38530 | None:intergenic | 20.0% |
| !! | TCTGTGTTTGAATTTATTTA+TGG | - | tig0018891:38511-38530 | Msa1369720:five_prime_UTR | 20.0% |
| ! | AAACAACACTCAAATATCAA+AGG | + | tig0018891:32746-32765 | None:intergenic | 25.0% |
| !! | TTTGATATTTGAGTGTTGTT+TGG | - | tig0018891:32745-32764 | Msa1369720:intron | 25.0% |
| ! | TTGGATTAATGATGAAAGAA+TGG | - | tig0018891:32764-32783 | Msa1369720:intron | 25.0% |
| ! | ATTAAGCTGTTTATTCAAAC+GGG | - | tig0018891:33133-33152 | Msa1369720:intron | 25.0% |
| ! | ATTCGACCATACTAAAAAAA+TGG | - | tig0018891:33224-33243 | Msa1369720:intron | 25.0% |
| !!! | AAACCACCATTTTTTTAGTA+TGG | + | tig0018891:33233-33252 | None:intergenic | 25.0% |
| ! | ATACTAAAAAAATGGTGGTT+TGG | - | tig0018891:33232-33251 | Msa1369720:intron | 25.0% |
| ! | TAAATAATAGCCGTTGTTTA+AGG | - | tig0018891:33497-33516 | Msa1369720:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | tig0018891:33597-33616 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | tig0018891:33598-33617 | None:intergenic | 25.0% |
| !!! | CTCAAAATAATTGTCACTTT+AGG | + | tig0018891:33694-33713 | None:intergenic | 25.0% |
| ! | AAAGAAGATTAAAGTTCCAA+TGG | + | tig0018891:33820-33839 | None:intergenic | 25.0% |
| ! | AAACAGATATAGATACCTTA+TGG | + | tig0018891:33853-33872 | None:intergenic | 25.0% |
| !! | TACTAATTGAAATTTTGTGC+AGG | - | tig0018891:33880-33899 | Msa1369720:intron | 25.0% |
| ! | CTGCAATAAAGTGATAATAA+TGG | + | tig0018891:33980-33999 | None:intergenic | 25.0% |
| ! | CATTATTATCACTTTATTGC+AGG | - | tig0018891:33978-33997 | Msa1369720:intron | 25.0% |
| !! | GATTTCACTTCTTTTCATTT+TGG | - | tig0018891:34000-34019 | Msa1369720:intron | 25.0% |
| ! | ATACACTAAAGAGATTCAAT+TGG | + | tig0018891:34518-34537 | None:intergenic | 25.0% |
| ! | AATAACAAAATCACACTTCA+AGG | + | tig0018891:34547-34566 | None:intergenic | 25.0% |
| !! | CAATGATACTATTCTCATTT+TGG | - | tig0018891:34749-34768 | Msa1369720:intron | 25.0% |
| ! | ACACTTAGTAATAATATAGG+GGG | + | tig0018891:34838-34857 | None:intergenic | 25.0% |
| ! | CACATGAAATTAACAAAATG+AGG | + | tig0018891:35044-35063 | None:intergenic | 25.0% |
| ! | TGAAAATTACGAGTCTTTAT+GGG | - | tig0018891:35062-35081 | Msa1369720:intron | 25.0% |
| !!! | GATGAAAGCATTAAAAGATT+TGG | - | tig0018891:35171-35190 | Msa1369720:intron | 25.0% |
| !!! | AAAAATTTTGTTTGCTTCAC+TGG | + | tig0018891:35235-35254 | None:intergenic | 25.0% |
| ! | AACAATGCTAACAAAAATGA+AGG | + | tig0018891:35290-35309 | None:intergenic | 25.0% |
| ! | ATCAACAAAATTCGATATGT+CGG | + | tig0018891:35417-35436 | None:intergenic | 25.0% |
| ! | TTTGTTCTTGTATTTCTTGT+TGG | - | tig0018891:35654-35673 | Msa1369720:CDS | 25.0% |
| !!! | TCATTGTCTACTATTTTTCA+TGG | - | tig0018891:35815-35834 | Msa1369720:intron | 25.0% |
| ! | AATATATAATACTCGTGAGT+AGG | + | tig0018891:36134-36153 | None:intergenic | 25.0% |
| ! | AGATTGCAAATATTTGTAAC+TGG | - | tig0018891:36343-36362 | Msa1369720:intron | 25.0% |
| ! | GTTATGCAACTAAAATAAAG+TGG | + | tig0018891:36469-36488 | None:intergenic | 25.0% |
| ! | CACTAATTGTTAGTAACTAA+AGG | + | tig0018891:36493-36512 | None:intergenic | 25.0% |
| ! | CTTTAGTTACTAACAATTAG+TGG | - | tig0018891:36491-36510 | Msa1369720:CDS | 25.0% |
| ! | AGATTATTAAGCTAATCTTG+CGG | - | tig0018891:36590-36609 | Msa1369720:intron | 25.0% |
| !!! | AATTTTTAAGTGGAATATGG+CGG | + | tig0018891:36738-36757 | None:intergenic | 25.0% |
| ! | TAAATAGTATTCAAGCACTT+GGG | - | tig0018891:36768-36787 | Msa1369720:intron | 25.0% |
| ! | ATGCTAGAATTTAAGTAGTT+TGG | + | tig0018891:36831-36850 | None:intergenic | 25.0% |
| ! | TACTATTGAAGATTAACTGA+TGG | - | tig0018891:37009-37028 | Msa1369720:intron | 25.0% |
| ! | GTTCTTTCAATAATAATGTC+CGG | + | tig0018891:37175-37194 | None:intergenic | 25.0% |
| ! | TTATTGAAAGAACTAAAGGT+TGG | - | tig0018891:37182-37201 | Msa1369720:intron | 25.0% |
| ! | TATTGAAAGAACTAAAGGTT+GGG | - | tig0018891:37183-37202 | Msa1369720:intron | 25.0% |
| ! | AACTTATACTAAAAGATGCT+TGG | - | tig0018891:37297-37316 | Msa1369720:intron | 25.0% |
| !! | ATATTCAAGTTAAGGAAGAT+GGG | - | tig0018891:37544-37563 | Msa1369720:intron | 25.0% |
| ! | GATAAATTTCATGTCAGTTA+TGG | - | tig0018891:37972-37991 | Msa1369720:intron | 25.0% |
| !!! | TAAATTGCTTTTCAACACAA+TGG | + | tig0018891:38033-38052 | None:intergenic | 25.0% |
| ! | TTGAAAAGCAATTTAGATGT+TGG | - | tig0018891:38038-38057 | Msa1369720:intron | 25.0% |
| ! | ATAGTTTCATAGATAGATGA+TGG | - | tig0018891:38096-38115 | Msa1369720:intron | 25.0% |
| !!! | GAAGTTCAATTGTTGTTTAT+TGG | - | tig0018891:38170-38189 | Msa1369720:intron | 25.0% |
| ! | TAACTATCAATATCTGTTTC+TGG | + | tig0018891:38312-38331 | None:intergenic | 25.0% |
| ! | GTGTTTGAATTTATTTATGG+TGG | - | tig0018891:38514-38533 | Msa1369720:five_prime_UTR | 25.0% |
| !! | TAATGTTGTTGACTTCACTA+TGG | - | tig0018891:32807-32826 | Msa1369720:intron | 30.0% |
| !!! | AAGTTTTGTTGTGACTTATG+AGG | - | tig0018891:32939-32958 | Msa1369720:intron | 30.0% |
| TTAAGCTGTTTATTCAAACG+GGG | - | tig0018891:33134-33153 | Msa1369720:intron | 30.0% | |
| AAGTTAGCAAGAATGTGTAA+CGG | + | tig0018891:33407-33426 | None:intergenic | 30.0% | |
| AGGTTTATGCACGATTATTA+AGG | - | tig0018891:33517-33536 | Msa1369720:intron | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | tig0018891:33594-33613 | Msa1369720:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | - | tig0018891:33731-33750 | Msa1369720:intron | 30.0% | |
| TTAACAAAAGCTCAGATTCT+TGG | + | tig0018891:34220-34239 | None:intergenic | 30.0% | |
| TAATTCTTACTGCAGATATC+TGG | - | tig0018891:34323-34342 | Msa1369720:intron | 30.0% | |
| TCTTGATCTATCAGTAGTAT+TGG | + | tig0018891:34374-34393 | None:intergenic | 30.0% | |
| TGTTCCAAGTCGTTATAAAA+GGG | - | tig0018891:34669-34688 | Msa1369720:intron | 30.0% | |
| TTACTAAGTGTATTATCCCA+AGG | - | tig0018891:34847-34866 | Msa1369720:intron | 30.0% | |
| ATAACAAAGAGCTTAACCAT+AGG | + | tig0018891:34883-34902 | None:intergenic | 30.0% | |
| TAACAAAATGAGGAGAAATG+AGG | + | tig0018891:35034-35053 | None:intergenic | 30.0% | |
| GTGAAAATTACGAGTCTTTA+TGG | - | tig0018891:35061-35080 | Msa1369720:intron | 30.0% | |
| ! | AGCATTAAAAGATTTGGGAT+TGG | - | tig0018891:35177-35196 | Msa1369720:intron | 30.0% |
| TTAGCATTGTTTACTCTTGA+TGG | - | tig0018891:35299-35318 | Msa1369720:intron | 30.0% | |
| ! | AGAAAACTTTTCCTGTTTTG+TGG | - | tig0018891:35340-35359 | Msa1369720:intron | 30.0% |
| AATCAATCATAAGTGGGAAA+AGG | + | tig0018891:35448-35467 | None:intergenic | 30.0% | |
| ! | ACAAAGGTATATGTGTCAAT+TGG | - | tig0018891:35514-35533 | Msa1369720:intron | 30.0% |
| ATAGACGTTGTTGCAAAATT+TGG | - | tig0018891:35558-35577 | Msa1369720:intron | 30.0% | |
| ! | CTGCAATAGATTGTTGATAA+TGG | + | tig0018891:35949-35968 | None:intergenic | 30.0% |
| TATTTACACAGCATACATAC+AGG | + | tig0018891:35978-35997 | None:intergenic | 30.0% | |
| !! | TACTAACAATTAGTGGACTT+AGG | - | tig0018891:36498-36517 | Msa1369720:CDS | 30.0% |
| !! | CCAGATGTTCAATTTTTAAG+TGG | + | tig0018891:36748-36767 | None:intergenic | 30.0% |
| CCACTTAAAAATTGAACATC+TGG | - | tig0018891:36745-36764 | Msa1369720:intron | 30.0% | |
| GTAAATAGTATTCAAGCACT+TGG | - | tig0018891:36767-36786 | Msa1369720:intron | 30.0% | |
| AAATAGTATTCAAGCACTTG+GGG | - | tig0018891:36769-36788 | Msa1369720:intron | 30.0% | |
| !! | CCTTGATAGCTTTCTTTTAA+GGG | + | tig0018891:36801-36820 | None:intergenic | 30.0% |
| CCTTAAAAGAAAGCTATCAA+GGG | - | tig0018891:36799-36818 | Msa1369720:intron | 30.0% | |
| CTTAAAAGAAAGCTATCAAG+GGG | - | tig0018891:36800-36819 | Msa1369720:intron | 30.0% | |
| ! | GTATATATGATGGAAGTATG+AGG | - | tig0018891:37034-37053 | Msa1369720:intron | 30.0% |
| !! | TTTCTGTGTTTTATTATCGC+CGG | - | tig0018891:37153-37172 | Msa1369720:intron | 30.0% |
| ! | TGCAACTCATATTCAAGTTA+AGG | - | tig0018891:37536-37555 | Msa1369720:intron | 30.0% |
| ! | CATATTCAAGTTAAGGAAGA+TGG | - | tig0018891:37543-37562 | Msa1369720:intron | 30.0% |
| ! | GGTAAAGTTACTTTGAGTAA+TGG | + | tig0018891:37917-37936 | None:intergenic | 30.0% |
| AAATTTCATGTCAGTTATGG+TGG | - | tig0018891:37975-37994 | Msa1369720:intron | 30.0% | |
| AATTTCATGTCAGTTATGGT+GGG | - | tig0018891:37976-37995 | Msa1369720:intron | 30.0% | |
| ATTAAACAGATCAATGTCTC+AGG | - | tig0018891:38004-38023 | Msa1369720:intron | 30.0% | |
| ! | ACAGATATTGATAGTTACTG+AGG | - | tig0018891:38315-38334 | Msa1369720:CDS | 30.0% |
| ! | CAGATATTGATAGTTACTGA+GGG | - | tig0018891:38316-38335 | Msa1369720:CDS | 30.0% |
| !!! | CACATTTTAATTCCACAATC+TGG | + | tig0018891:38473-38492 | None:intergenic | 30.0% |
| GATAAGCTGAAAAAAGTCGA+TGG | + | tig0018891:32910-32929 | None:intergenic | 35.0% | |
| GGTCGAATGACAAGAAAAAA+AGG | + | tig0018891:33212-33231 | None:intergenic | 35.0% | |
| CGACCATACTAAAAAAATGG+TGG | - | tig0018891:33227-33246 | Msa1369720:intron | 35.0% | |
| ACAAATTCTATTCCTTGCCA+AGG | - | tig0018891:33273-33292 | Msa1369720:intron | 35.0% | |
| TTTAGTAGTCATCCTCACTA+TGG | - | tig0018891:33329-33348 | Msa1369720:CDS | 35.0% | |
| ATGAATAACCAGCTGAATGT+CGG | + | tig0018891:33364-33383 | None:intergenic | 35.0% | |
| AGTTAGCAAGAATGTGTAAC+GGG | + | tig0018891:33406-33425 | None:intergenic | 35.0% | |
| GTTACACATTCTTGCTAACT+TGG | - | tig0018891:33406-33425 | Msa1369720:intron | 35.0% | |
| GTAAATCTGATCAGTAACAG+TGG | + | tig0018891:33465-33484 | None:intergenic | 35.0% | |
| GGCTATTATTTAGAGATGGA+GGG | + | tig0018891:33489-33508 | None:intergenic | 35.0% | |
| CAACGGCTATTATTTAGAGA+TGG | + | tig0018891:33493-33512 | None:intergenic | 35.0% | |
| CGTGCATAAACCTTAAACAA+CGG | + | tig0018891:33510-33529 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | - | tig0018891:33608-33627 | Msa1369720:intron | 35.0% | |
| ACCAATTAATTCGTGTGAGA+CGG | - | tig0018891:33761-33780 | Msa1369720:intron | 35.0% | |
| TCTTTAGTAGAGTCACCATA+AGG | - | tig0018891:33835-33854 | Msa1369720:intron | 35.0% | |
| TATTCCTTATATTCACCCTC+TGG | - | tig0018891:34241-34260 | Msa1369720:intron | 35.0% | |
| !! | TCTATCAGTAGTATTGGCAT+TGG | + | tig0018891:34368-34387 | None:intergenic | 35.0% |
| ACAATTGTGCAACTTAGCTT+TGG | - | tig0018891:34410-34429 | Msa1369720:intron | 35.0% | |
| CTGTTCCAAGTCGTTATAAA+AGG | - | tig0018891:34668-34687 | Msa1369720:intron | 35.0% | |
| GTTCCAAGTCGTTATAAAAG+GGG | - | tig0018891:34670-34689 | Msa1369720:intron | 35.0% | |
| ! | TTTGGGATTGGATGTTTCAA+AGG | - | tig0018891:35189-35208 | Msa1369720:intron | 35.0% |
| TTGGGATTGGATGTTTCAAA+GGG | - | tig0018891:35190-35209 | Msa1369720:intron | 35.0% | |
| ! | CATTGTTTACTCTTGATGGT+TGG | - | tig0018891:35303-35322 | Msa1369720:intron | 35.0% |
| AGTCGCAATCAATCATAAGT+GGG | + | tig0018891:35454-35473 | None:intergenic | 35.0% | |
| AAGTCGCAATCAATCATAAG+TGG | + | tig0018891:35455-35474 | None:intergenic | 35.0% | |
| ! | CAACGTCTATGATTTGTAAG+TGG | + | tig0018891:35548-35567 | None:intergenic | 35.0% |
| ATAGCATGTCGAACATATGA+AGG | - | tig0018891:35771-35790 | Msa1369720:intron | 35.0% | |
| TGATATATTGTCAGAGACAC+TGG | - | tig0018891:35879-35898 | Msa1369720:intron | 35.0% | |
| GATATATTGTCAGAGACACT+GGG | - | tig0018891:35880-35899 | Msa1369720:intron | 35.0% | |
| AATTACAAGGAAGCTTCTCA+TGG | + | tig0018891:36032-36051 | None:intergenic | 35.0% | |
| ! | GGACTATTTACCTTCTTTTC+TGG | + | tig0018891:36221-36240 | None:intergenic | 35.0% |
| ATGCAAGGAAATACTAGAAG+AGG | + | tig0018891:36242-36261 | None:intergenic | 35.0% | |
| !! | CCTCATGAAACTGATTTGTA+AGG | + | tig0018891:36392-36411 | None:intergenic | 35.0% |
| CCTTACAAATCAGTTTCATG+AGG | - | tig0018891:36389-36408 | Msa1369720:intron | 35.0% | |
| TGAACACTTAGAATTTGGGT+TGG | + | tig0018891:36426-36445 | None:intergenic | 35.0% | |
| ATAAAAATGCTAGCGATGCT+GGG | - | tig0018891:36559-36578 | Msa1369720:intron | 35.0% | |
| ! | TGTGGCCAATTTAGTACTTT+TGG | - | tig0018891:36706-36725 | Msa1369720:intron | 35.0% |
| ! | GTGGCCAATTTAGTACTTTT+GGG | - | tig0018891:36707-36726 | Msa1369720:intron | 35.0% |
| !! | AGGTCCCAAAAGTACTAAAT+TGG | + | tig0018891:36714-36733 | None:intergenic | 35.0% |
| !! | GATAGCTTTCTTTTAAGGGA+GGG | + | tig0018891:36797-36816 | None:intergenic | 35.0% |
| !! | TGATAGCTTTCTTTTAAGGG+AGG | + | tig0018891:36798-36817 | None:intergenic | 35.0% |
| CCCTTAAAAGAAAGCTATCA+AGG | - | tig0018891:36798-36817 | Msa1369720:intron | 35.0% | |
| !! | CCCTTGATAGCTTTCTTTTA+AGG | + | tig0018891:36802-36821 | None:intergenic | 35.0% |
| ! | TAGCATCCCATATAACTTGT+GGG | - | tig0018891:36845-36864 | Msa1369720:intron | 35.0% |
| CCAATTCCCACAAGTTATAT+GGG | + | tig0018891:36854-36873 | None:intergenic | 35.0% | |
| TCCAATTCCCACAAGTTATA+TGG | + | tig0018891:36855-36874 | None:intergenic | 35.0% | |
| ATGCCTCTTTCTATTTGAAG+AGG | - | tig0018891:36947-36966 | Msa1369720:intron | 35.0% | |
| ACTGATGGCTGTATATATGA+TGG | - | tig0018891:37024-37043 | Msa1369720:intron | 35.0% | |
| AAGCATAAAGAATGCTAGAG+TGG | + | tig0018891:37134-37153 | None:intergenic | 35.0% | |
| GTGCTCTTCAAAAAGAGTTA+AGG | + | tig0018891:37397-37416 | None:intergenic | 35.0% | |
| AAATTGCAGCATGCAATATC+TGG | + | tig0018891:37453-37472 | None:intergenic | 35.0% | |
| TCAAACACCTATCGCATATT+GGG | + | tig0018891:37703-37722 | None:intergenic | 35.0% | |
| ATCAAACACCTATCGCATAT+TGG | + | tig0018891:37704-37723 | None:intergenic | 35.0% | |
| ATTATTTCAACTAGCAACCC+TGG | + | tig0018891:37792-37811 | None:intergenic | 35.0% | |
| TGTGAACATTGATGTTGAGT+CGG | - | tig0018891:37827-37846 | Msa1369720:intron | 35.0% | |
| ATTTCATGTCAGTTATGGTG+GGG | - | tig0018891:37977-37996 | Msa1369720:intron | 35.0% | |
| GTTTGATCATCCTTTATCAG+AGG | - | tig0018891:38060-38079 | Msa1369720:intron | 35.0% | |
| ATTACTTGCACAACAATCTC+AGG | - | tig0018891:38251-38270 | Msa1369720:intron | 35.0% | |
| ATAATATGGAGCTGACACTT+TGG | + | tig0018891:38398-38417 | None:intergenic | 35.0% | |
| CCTCACAGGTGATAATAATA+TGG | + | tig0018891:38412-38431 | None:intergenic | 35.0% | |
| CCATATTATTATCACCTGTG+AGG | - | tig0018891:38409-38428 | Msa1369720:five_prime_UTR | 35.0% | |
| GTGACTCAGTTCATTTGTTC+CGG | - | tig0018891:32446-32465 | Msa1369720:three_prime_UTR | 40.0% | |
| ! | AAGAAAGTGTGAGAGGAAAG+AGG | + | tig0018891:32596-32615 | None:intergenic | 40.0% |
| ATTGTCTCACTTGTTCTTGG+CGG | + | tig0018891:32639-32658 | None:intergenic | 40.0% | |
| AGGATTGTCTCACTTGTTCT+TGG | + | tig0018891:32642-32661 | None:intergenic | 40.0% | |
| GACTTCACTATGGATCGAAT+AGG | - | tig0018891:32817-32836 | Msa1369720:intron | 40.0% | |
| TTGTGACTTATGAGGCAGTT+TGG | - | tig0018891:32947-32966 | Msa1369720:intron | 40.0% | |
| AGAATTTGTAACCTCGACTC+AGG | + | tig0018891:33262-33281 | None:intergenic | 40.0% | |
| ATTCTATTCCTTGCCAAGGA+TGG | - | tig0018891:33277-33296 | Msa1369720:intron | 40.0% | |
| GTTAGCAAGAATGTGTAACG+GGG | + | tig0018891:33405-33424 | None:intergenic | 40.0% | |
| CGGCTATTATTTAGAGATGG+AGG | + | tig0018891:33490-33509 | None:intergenic | 40.0% | |
| AGACAATTATTGTGAGACGG+AGG | - | tig0018891:33734-33753 | Msa1369720:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | tig0018891:33735-33754 | Msa1369720:intron | 40.0% | |
| TCCGTCTCACACGAATTAAT+TGG | + | tig0018891:33765-33784 | None:intergenic | 40.0% | |
| AATTAATTCGTGTGAGACGG+AGG | - | tig0018891:33764-33783 | Msa1369720:intron | 40.0% | |
| ATTAATTCGTGTGAGACGGA+GGG | - | tig0018891:33765-33784 | Msa1369720:intron | 40.0% | |
| CAATGGTGTTCACAAACAAC+TGG | + | tig0018891:33803-33822 | None:intergenic | 40.0% | |
| CAGTTGTTTGTGAACACCAT+TGG | - | tig0018891:33801-33820 | Msa1369720:intron | 40.0% | |
| AGCTGTGGTGTAAAGCAATA+TGG | + | tig0018891:34069-34088 | None:intergenic | 40.0% | |
| ! | TTTGTGCTGGTGTAAGATAG+TGG | - | tig0018891:34169-34188 | Msa1369720:intron | 40.0% |
| AAGACCAGAGGGTGAATATA+AGG | + | tig0018891:34248-34267 | None:intergenic | 40.0% | |
| ACCAGTCTAAAAAGACCAGA+GGG | + | tig0018891:34259-34278 | None:intergenic | 40.0% | |
| TACCAGTCTAAAAAGACCAG+AGG | + | tig0018891:34260-34279 | None:intergenic | 40.0% | |
| GGGGAAAACTACTTACAACT+AGG | + | tig0018891:34819-34838 | None:intergenic | 40.0% | |
| CATAGGACAAGATCATCCTT+GGG | + | tig0018891:34866-34885 | None:intergenic | 40.0% | |
| ATCTCTTTATGAAGGTCCGA+AGG | - | tig0018891:34909-34928 | Msa1369720:intron | 40.0% | |
| ! | AGGCTTGTTCGTTAAGTAGA+TGG | + | tig0018891:35014-35033 | None:intergenic | 40.0% |
| TATGCTTTACTTGGCTGTCT+AGG | - | tig0018891:35089-35108 | Msa1369720:intron | 40.0% | |
| CGAATGCTCTCTAACATATC+AGG | + | tig0018891:35921-35940 | None:intergenic | 40.0% | |
| CATAAAGGCTCCAGAAAAGA+AGG | - | tig0018891:36208-36227 | Msa1369720:intron | 40.0% | |
| !! | TTTTAGGTAGACCTCTGCTT+CGG | - | tig0018891:36295-36314 | Msa1369720:intron | 40.0% |
| ! | TAAAGTGGTGATGACTGACA+AGG | + | tig0018891:36454-36473 | None:intergenic | 40.0% |
| TGGACTTAGGTAGTTAGAGA+GGG | - | tig0018891:36511-36530 | Msa1369720:CDS | 40.0% | |
| TAGTTAGAGAGGGTTAGAGT+AGG | - | tig0018891:36521-36540 | Msa1369720:CDS | 40.0% | |
| CATAAAAATGCTAGCGATGC+TGG | - | tig0018891:36558-36577 | Msa1369720:intron | 40.0% | |
| CTAGCATCCCATATAACTTG+TGG | - | tig0018891:36844-36863 | Msa1369720:intron | 40.0% | |
| ! | CCCATATAACTTGTGGGAAT+TGG | - | tig0018891:36851-36870 | Msa1369720:intron | 40.0% |
| TGTAATGTATGAGGTTGACG+GGG | + | tig0018891:36897-36916 | None:intergenic | 40.0% | |
| CTGTAATGTATGAGGTTGAC+GGG | + | tig0018891:36898-36917 | None:intergenic | 40.0% | |
| CCTGTAATGTATGAGGTTGA+CGG | + | tig0018891:36899-36918 | None:intergenic | 40.0% | |
| TCAGTCTCCTGTAATGTATG+AGG | + | tig0018891:36906-36925 | None:intergenic | 40.0% | |
| CCACCTCTTCAAATAGAAAG+AGG | + | tig0018891:36953-36972 | None:intergenic | 40.0% | |
| CCTCTTTCTATTTGAAGAGG+TGG | - | tig0018891:36950-36969 | Msa1369720:CDS | 40.0% | |
| GCTGCATCGGAAAAAGATTT+AGG | - | tig0018891:36972-36991 | Msa1369720:CDS | 40.0% | |
| TTGGGCTGCTTAATTGATAC+TGG | - | tig0018891:37201-37220 | Msa1369720:intron | 40.0% | |
| ATAGATGCAAACCTCCTCTT+GGG | + | tig0018891:37570-37589 | None:intergenic | 40.0% | |
| ATTGCAACCCAATATGCGAT+AGG | - | tig0018891:37693-37712 | Msa1369720:intron | 40.0% | |
| AACTGAAAGTCAGAGACAGA+CGG | + | tig0018891:37893-37912 | None:intergenic | 40.0% | |
| ! | TGCACAACAATCTCAGGTTT+TGG | - | tig0018891:38257-38276 | Msa1369720:intron | 40.0% |
| ! | ATGATGACGACGATGGAAGT+TGG | + | tig0018891:32488-32507 | None:intergenic | 45.0% |
| ! | GAATGCATTGGTCAAAGCCA+TGG | + | tig0018891:32519-32538 | None:intergenic | 45.0% |
| AGTGTGAGAGGAAAGAGGAA+AGG | + | tig0018891:32591-32610 | None:intergenic | 45.0% | |
| TATTCCTTGCCAAGGATGGA+GGG | - | tig0018891:33281-33300 | Msa1369720:intron | 45.0% | |
| TAGTCATCCTCACTATGGAC+AGG | - | tig0018891:33334-33353 | Msa1369720:CDS | 45.0% | |
| AGTCTCCAATCCTAGAAACC+TGG | - | tig0018891:33429-33448 | Msa1369720:intron | 45.0% | |
| TGCAGTAGATTCAGCTTCAC+TGG | - | tig0018891:33935-33954 | Msa1369720:intron | 45.0% | |
| !! | ACCCTCTGGTCTTTTTAGAC+TGG | - | tig0018891:34255-34274 | Msa1369720:intron | 45.0% |
| !! | CTTAGCTTTGGTGATCGTCT+TGG | - | tig0018891:34422-34441 | Msa1369720:intron | 45.0% |
| TCTTGGAGCTCTTCTTGACA+CGG | - | tig0018891:34439-34458 | Msa1369720:intron | 45.0% | |
| TGACACGGTGATGTGGTTAT+TGG | - | tig0018891:34454-34473 | Msa1369720:intron | 45.0% | |
| GACACGGTGATGTGGTTATT+GGG | - | tig0018891:34455-34474 | Msa1369720:intron | 45.0% | |
| ! | AGGCCCCTTTTATAACGACT+TGG | + | tig0018891:34676-34695 | None:intergenic | 45.0% |
| GCTGTCAACAGCTTAAACAC+AGG | + | tig0018891:34696-34715 | None:intergenic | 45.0% | |
| ACAACTAGGTGACTGTCATG+TGG | + | tig0018891:34805-34824 | None:intergenic | 45.0% | |
| CCATAGGACAAGATCATCCT+TGG | + | tig0018891:34867-34886 | None:intergenic | 45.0% | |
| CCAAGGATGATCTTGTCCTA+TGG | - | tig0018891:34864-34883 | Msa1369720:intron | 45.0% | |
| ATGGGCCTCTATGCTTTACT+TGG | - | tig0018891:35080-35099 | Msa1369720:intron | 45.0% | |
| GACAGCCAAGTAAAGCATAG+AGG | + | tig0018891:35088-35107 | None:intergenic | 45.0% | |
| TATGCCAAACACTTCACCCA+GGG | + | tig0018891:36192-36211 | None:intergenic | 45.0% | |
| TTATGCCAAACACTTCACCC+AGG | + | tig0018891:36193-36212 | None:intergenic | 45.0% | |
| ! | GGGTGAAGTGTTTGGCATAA+AGG | - | tig0018891:36193-36212 | Msa1369720:intron | 45.0% |
| TTTAGGTAGACCTCTGCTTC+GGG | - | tig0018891:36296-36315 | Msa1369720:intron | 45.0% | |
| AAGAAAAAACCCCGAAGCAG+AGG | + | tig0018891:36309-36328 | None:intergenic | 45.0% | |
| GTGGACTTAGGTAGTTAGAG+AGG | - | tig0018891:36510-36529 | Msa1369720:CDS | 45.0% | |
| TTTAAGTGGAATATGGCGGC+AGG | + | tig0018891:36734-36753 | None:intergenic | 45.0% | |
| CCGTCAACCTCATACATTAC+AGG | - | tig0018891:36896-36915 | Msa1369720:intron | 45.0% | |
| ATTTGAAGAGGTGGCTGCAT+CGG | - | tig0018891:36959-36978 | Msa1369720:CDS | 45.0% | |
| CATAGATGCAAACCTCCTCT+TGG | + | tig0018891:37571-37590 | None:intergenic | 45.0% | |
| AGAGGAGGTTTGCATCTATG+TGG | - | tig0018891:37571-37590 | Msa1369720:intron | 45.0% | |
| TGTACATCGAGACAGCAGAT+AGG | - | tig0018891:37766-37785 | Msa1369720:intron | 45.0% | |
| CCTGCAGAGCGAAAAAAAGT+GGG | + | tig0018891:37938-37957 | None:intergenic | 45.0% | |
| !!! | CCACTTTTTTTCGCTCTGCA+GGG | - | tig0018891:37936-37955 | Msa1369720:intron | 45.0% |
| TCTGCAGGGTTTGATTGCTA+AGG | - | tig0018891:37950-37969 | Msa1369720:intron | 45.0% | |
| CACTCTACAGCCTCTGATAA+AGG | + | tig0018891:38073-38092 | None:intergenic | 45.0% | |
| !! | CAATATCTGTTTCTGGCGTC+CGG | + | tig0018891:38305-38324 | None:intergenic | 45.0% |
| GCATTACTGCTACCAGATTG+TGG | - | tig0018891:38458-38477 | Msa1369720:five_prime_UTR | 45.0% | |
| !!! | TTATTTTTTTTTTTAATTGA+TGG | - | tig0018891:34637-34656 | Msa1369720:intron | 5.0% |
| !!! | TTTTATTGTTAATATTTAAA+TGG | - | tig0018891:37086-37105 | Msa1369720:intron | 5.0% |
| TGGTGTACTCTCTGCGTAAC+CGG | + | tig0018891:32468-32487 | None:intergenic | 50.0% | |
| ! | GGAGATGATGATGACGACGA+TGG | + | tig0018891:32495-32514 | None:intergenic | 50.0% |
| ! | TGCATTGGTCAAAGCCATGG+CGG | + | tig0018891:32516-32535 | None:intergenic | 50.0% |
| GGAAGGAGCGATGAATGCAT+TGG | + | tig0018891:32531-32550 | None:intergenic | 50.0% | |
| !! | GGAAAGGTTGGTGGTTTGGA+CGG | + | tig0018891:32558-32577 | None:intergenic | 50.0% |
| !! | GATCGGAAAGGTTGGTGGTT+TGG | + | tig0018891:32562-32581 | None:intergenic | 50.0% |
| AAGAGGAAAGGAGAGCGGAT+CGG | + | tig0018891:32579-32598 | None:intergenic | 50.0% | |
| GAGGAAAGAGGAAAGGAGAG+CGG | + | tig0018891:32584-32603 | None:intergenic | 50.0% | |
| ! | GAAGGGGAAGAAAGTGTGAG+AGG | + | tig0018891:32603-32622 | None:intergenic | 50.0% |
| CTATTCCTTGCCAAGGATGG+AGG | - | tig0018891:33280-33299 | Msa1369720:intron | 50.0% | |
| !! | CTGAGCCAGGTTTCTAGGAT+TGG | + | tig0018891:33437-33456 | None:intergenic | 50.0% |
| GCACACAAGCTACACATGTG+AGG | + | tig0018891:34096-34115 | None:intergenic | 50.0% | |
| GTCTGTGTCTGAGTTTGTGC+TGG | - | tig0018891:34156-34175 | Msa1369720:intron | 50.0% | |
| CTCTTCTTGACACGGTGATG+TGG | - | tig0018891:34447-34466 | Msa1369720:intron | 50.0% | |
| GTGACTGTCATGTGGATGTC+GGG | + | tig0018891:34797-34816 | None:intergenic | 50.0% | |
| GGTGACTGTCATGTGGATGT+CGG | + | tig0018891:34798-34817 | None:intergenic | 50.0% | |
| AAAGGGAACTGTCTCCACTG+AGG | - | tig0018891:35207-35226 | Msa1369720:intron | 50.0% | |
| AAGGGAACTGTCTCCACTGA+GGG | - | tig0018891:35208-35227 | Msa1369720:intron | 50.0% | |
| CTCACGCTACACCACAAAAC+AGG | + | tig0018891:35354-35373 | None:intergenic | 50.0% | |
| CTAGTTGTTCACTGGACTCC+TGG | + | tig0018891:36169-36188 | None:intergenic | 50.0% | |
| TCCAGTGAACAACTAGCCCT+GGG | - | tig0018891:36173-36192 | Msa1369720:intron | 50.0% | |
| TTAGGTAGACCTCTGCTTCG+GGG | - | tig0018891:36297-36316 | Msa1369720:intron | 50.0% | |
| ACGGGGACTTGGGTATTATG+GGG | + | tig0018891:36880-36899 | None:intergenic | 50.0% | |
| GACGGGGACTTGGGTATTAT+GGG | + | tig0018891:36881-36900 | None:intergenic | 50.0% | |
| TGACGGGGACTTGGGTATTA+TGG | + | tig0018891:36882-36901 | None:intergenic | 50.0% | |
| TATGAGGTTGACGGGGACTT+GGG | + | tig0018891:36890-36909 | None:intergenic | 50.0% | |
| TTAAGGAAGATGGGCCCAAG+AGG | - | tig0018891:37553-37572 | Msa1369720:intron | 50.0% | |
| !!! | CCCACTTTTTTTCGCTCTGC+AGG | - | tig0018891:37935-37954 | Msa1369720:intron | 50.0% |
| CCCTGCAGAGCGAAAAAAAG+TGG | + | tig0018891:37939-37958 | None:intergenic | 50.0% | |
| ACTGTCTGCGTTACTACCTC+CGG | - | tig0018891:38283-38302 | Msa1369720:CDS | 50.0% | |
| ATGTGAGATGTGTGCCTCAC+AGG | + | tig0018891:38426-38445 | None:intergenic | 50.0% | |
| CGTCATCATCATCTCCGCCA+TGG | - | tig0018891:32499-32518 | Msa1369720:three_prime_UTR | 55.0% | |
| ! | GTGGTTTGGACGGAGAAGGA+AGG | + | tig0018891:32548-32567 | None:intergenic | 55.0% |
| !! | GTTGGTGGTTTGGACGGAGA+AGG | + | tig0018891:32552-32571 | None:intergenic | 55.0% |
| GAAAGGAGAGCGGATCGGAA+AGG | + | tig0018891:32574-32593 | None:intergenic | 55.0% | |
| TCTTGGCGGAGGAAGAGGAA+CGG | + | tig0018891:32625-32644 | None:intergenic | 55.0% | |
| CTTGTTCTTGGCGGAGGAAG+AGG | + | tig0018891:32630-32649 | None:intergenic | 55.0% | |
| GTCTCACTTGTTCTTGGCGG+AGG | + | tig0018891:32636-32655 | None:intergenic | 55.0% | |
| CGGATAGCCTGTCCATAGTG+AGG | + | tig0018891:33344-33363 | None:intergenic | 55.0% | |
| CAGGCTATCCGACATTCAGC+TGG | - | tig0018891:33353-33372 | Msa1369720:CDS | 55.0% | |
| ! | CACATGTGAGGTGTCAGCTG+TGG | + | tig0018891:34084-34103 | None:intergenic | 55.0% |
| TTGCTTCACTGGTCCCTCAG+TGG | + | tig0018891:35224-35243 | None:intergenic | 55.0% | |
| GTCCAGTGAACAACTAGCCC+TGG | - | tig0018891:36172-36191 | Msa1369720:intron | 55.0% | |
| !! | ACCCAGGGCTAGTTGTTCAC+TGG | + | tig0018891:36177-36196 | None:intergenic | 55.0% |
| ! | CTAGCCCTGGGTGAAGTGTT+TGG | - | tig0018891:36185-36204 | Msa1369720:intron | 55.0% |
| GTATGAGGTTGACGGGGACT+TGG | + | tig0018891:36891-36910 | None:intergenic | 55.0% | |
| ATCGAGACAGCAGATAGGCC+AGG | - | tig0018891:37771-37790 | Msa1369720:intron | 55.0% | |
| TCGAGACAGCAGATAGGCCA+GGG | - | tig0018891:37772-37791 | Msa1369720:intron | 55.0% | |
| GTCGGCTGAGATCGATACAG+AGG | - | tig0018891:37845-37864 | Msa1369720:intron | 55.0% | |
| AGTCAGAGACAGACGGAAGC+AGG | + | tig0018891:37886-37905 | None:intergenic | 55.0% | |
| !! | TATCTGTTTCTGGCGTCCGG+AGG | + | tig0018891:38302-38321 | None:intergenic | 55.0% |
| GAGCGGATCGGAAAGGTTGG+TGG | + | tig0018891:32567-32586 | None:intergenic | 60.0% | |
| GGAGAGCGGATCGGAAAGGT+TGG | + | tig0018891:32570-32589 | None:intergenic | 60.0% | |
| CGGAGGAAGAGGAACGGAAG+GGG | + | tig0018891:32619-32638 | None:intergenic | 60.0% | |
| GCGGAGGAAGAGGAACGGAA+GGG | + | tig0018891:32620-32639 | None:intergenic | 60.0% | |
| ! | GGTTTGGTTCGCCTGAGTCG+AGG | - | tig0018891:33248-33267 | Msa1369720:intron | 60.0% |
| TCCTTGCCAAGGATGGAGGG+AGG | - | tig0018891:33284-33303 | Msa1369720:intron | 60.0% | |
| CCTTGCCAAGGATGGAGGGA+GGG | - | tig0018891:33285-33304 | Msa1369720:intron | 60.0% | |
| CTTGCCAAGGATGGAGGGAG+GGG | - | tig0018891:33286-33305 | Msa1369720:intron | 60.0% | |
| TTGCCAAGGATGGAGGGAGG+GGG | - | tig0018891:33287-33306 | Msa1369720:intron | 60.0% | |
| CTGCGCTGAGCCAGGTTTCT+AGG | + | tig0018891:33442-33461 | None:intergenic | 60.0% | |
| AGGAAGATGGGCCCAAGAGG+AGG | - | tig0018891:37556-37575 | Msa1369720:intron | 60.0% | |
| CAGACGGAAGCAGGACAGAG+AGG | + | tig0018891:37877-37896 | None:intergenic | 60.0% | |
| GGCGGAGGAAGAGGAACGGA+AGG | + | tig0018891:32621-32640 | None:intergenic | 65.0% | |
| CCCTCCCTCCATCCTTGGCA+AGG | + | tig0018891:33288-33307 | None:intergenic | 65.0% | |
| ATGGAGGGAGGGGGTGGCTA+CGG | - | tig0018891:33296-33315 | Msa1369720:intron | 65.0% | |
| AACAGTGGCTGCGCTGAGCC+AGG | + | tig0018891:33450-33469 | None:intergenic | 65.0% | |
| CCACCCCCTCCCTCCATCCT+TGG | + | tig0018891:33293-33312 | None:intergenic | 70.0% | |
| CCAAGGATGGAGGGAGGGGG+TGG | - | tig0018891:33290-33309 | Msa1369720:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018891 | gene | 32368 | 38538 | 32368 | ID=Msa1369720;Name=Msa1369720 |
| tig0018891 | mRNA | 32368 | 38538 | 32368 | ID=Msa1369720-mRNA-1;Parent=Msa1369720;Name=Msa1369720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=150|1|1|1|1|1|10|203|280 |
| tig0018891 | exon | 32368 | 32633 | 32368 | ID=Msa1369720-mRNA-1:exon:1323;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 32881 | 32949 | 32881 | ID=Msa1369720-mRNA-1:exon:1322;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 33040 | 33145 | 33040 | ID=Msa1369720-mRNA-1:exon:1321;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 33329 | 33384 | 33329 | ID=Msa1369720-mRNA-1:exon:1320;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 34677 | 34736 | 34677 | ID=Msa1369720-mRNA-1:exon:1319;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 34929 | 35013 | 34929 | ID=Msa1369720-mRNA-1:exon:1318;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 35640 | 35734 | 35640 | ID=Msa1369720-mRNA-1:exon:1317;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 36446 | 36568 | 36446 | ID=Msa1369720-mRNA-1:exon:1316;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 36950 | 37004 | 36950 | ID=Msa1369720-mRNA-1:exon:1315;Parent=Msa1369720-mRNA-1 |
| tig0018891 | exon | 38258 | 38538 | 38258 | ID=Msa1369720-mRNA-1:exon:1314;Parent=Msa1369720-mRNA-1 |
| tig0018891 | five_prime_UTR | 38389 | 38538 | 38389 | ID=Msa1369720-mRNA-1:five_prime_utr;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 38258 | 38388 | 38258 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 36950 | 37004 | 36950 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 36446 | 36568 | 36446 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 35640 | 35734 | 35640 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 34929 | 35013 | 34929 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 34677 | 34736 | 34677 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 33329 | 33384 | 33329 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 33040 | 33145 | 33040 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 32881 | 32949 | 32881 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | CDS | 32571 | 32633 | 32571 | ID=Msa1369720-mRNA-1:cds;Parent=Msa1369720-mRNA-1 |
| tig0018891 | three_prime_UTR | 32368 | 32570 | 32368 | ID=Msa1369720-mRNA-1:three_prime_utr;Parent=Msa1369720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
