AlfalfaGEDB | Msa1358170

M. sativa cultivar zhongmu-4 / Msa1358170

KEGG: -
GO: GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146
PFAM: PF00168.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358170	XP_024640338.1	96.624	1007	8	2	1	981	1	1007	0.0	1998

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358170	sp\|Q9M2R0\|FTIP3_ARATH	67.439	777	217	7	232	981	6	773	0.0	1113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358170	G7KC44	96.624	1007	8	2	1	981	1	1007	0.0	1998

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0689180	Msa1358170	0.918631	1.227250e-86	-8.615850e-47
Msa0753230	Msa1358170	0.872742	2.516634e-67	-8.615850e-47
Msa0795490	Msa1358170	0.846197	2.526678e-59	-8.615850e-47
Msa1357950	Msa1358170	0.858076	1.055546e-62	-8.615850e-47
Msa1358170	Msa1411480	0.862613	4.476637e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358170	MtrunA17_Chr5g0397601	96.624	1007	8	2	1	981	1	1007	0.0	1998
Msa1358170	MtrunA17_Chr8g0349231	62.106	1016	337	14	1	981	1	1003	0.0	1276
Msa1358170	MtrunA17_Chr7g0258331	66.496	779	223	7	232	981	6	775	0.0	1097
Msa1358170	MtrunA17_Chr1g0174761	66.152	777	228	5	232	981	6	774	0.0	1078
Msa1358170	MtrunA17_Chr4g0033151	64.942	773	235	6	234	981	9	770	0.0	1072
Msa1358170	MtrunA17_Chr1g0174581	59.466	787	277	7	234	981	14	797	0.0	993
Msa1358170	MtrunA17_Chr3g0087501	59.924	791	271	10	234	981	35	822	0.0	993
Msa1358170	MtrunA17_Chr4g0010751	61.559	757	254	7	258	981	442	1194	0.0	989
Msa1358170	MtrunA17_Chr4g0010751	35.359	181	116	1	4	183	1	181	1.80e-25	114
Msa1358170	MtrunA17_Chr4g0014711	59.719	782	274	10	231	981	273	1044	0.0	959

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1358170	AT4G11610.2	73.262	1021	217	8	1	981	3	1007	1561
Msa1358170	AT4G11610.1	73.066	1021	223	8	1	981	3	1011	1558
Msa1358170	AT4G11610.3	74.505	859	177	6	163	981	18	874	1342
Msa1358170	AT4G00700.1	54.990	1022	403	11	1	981	1	1006	1135
Msa1358170	AT4G00700.2	54.990	1022	403	11	1	981	1	1006	1135
Msa1358170	AT3G57880.4	67.439	777	217	7	232	981	6	773	1113
Msa1358170	AT3G57880.2	67.439	777	217	7	232	981	6	773	1113
Msa1358170	AT3G57880.3	67.439	777	217	7	232	981	6	773	1113
Msa1358170	AT3G57880.1	67.439	777	217	7	232	981	6	773	1113
Msa1358170	AT5G12970.1	67.010	776	219	5	231	981	6	769	1089

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Find 221 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCTTCATTCCATTG+TGG	0.517456	tig0016220:-352779	None:intergenic
AAAAGATGAGATCATTGGGA+GGG	0.647144	tig0016220:+352868	Msa1358170:CDS
AAAAGGATCTTAATCCTGTT+TGG	0.345946	tig0016220:+351469	Msa1358170:CDS
AAACCAGCCACCATTTGAAA+AGG	0.520236	tig0016220:-354367	None:intergenic
AAAGAAACAAGTCCGTTTCT+CGG	0.443107	tig0016220:+352050	Msa1358170:CDS
AAAGATCTTCATTCCATTGT+GGG	0.420444	tig0016220:-352778	None:intergenic
AAATTCCTCATCCATTTCAT+CGG	0.503321	tig0016220:-354137	None:intergenic
AACAGAAGGATTTGGAATTG+AGG	0.489461	tig0016220:-351748	None:intergenic
AACATACTATCAGTTCTTGC+AGG	0.433599	tig0016220:-354469	None:intergenic
AACATAGTGGCAGCGCGGCT+CGG	0.511333	tig0016220:+353634	Msa1358170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCGAAGTAAAGTTCTACAA+AGG	-	tig0016220:351421-351440	None:intergenic	30.0%
TTTGTAGAACTTTACTTCGA+TGG	+	tig0016220:351420-351439	Msa1358170:CDS	30.0%
AAAAGGATCTTAATCCTGTT+TGG	+	tig0016220:351469-351488	Msa1358170:CDS	30.0%
ACTAACTCAAGTTCATTTCT+TGG	+	tig0016220:351579-351598	Msa1358170:CDS	30.0%
ACTTCAGCATGATTATTTGT+TGG	-	tig0016220:351783-351802	None:intergenic	30.0%
ATTTCATCAGCTTCATACTT+CGG	-	tig0016220:351951-351970	None:intergenic	30.0%
TCTTTAAGTGCAAAATCAAC+CGG	-	tig0016220:352035-352054	None:intergenic	30.0%
AACTAGATCATATGTACTTG+CGG	-	tig0016220:352120-352139	None:intergenic	30.0%
GTACATATGATCTAGTTGAA+AGG	+	tig0016220:352123-352142	Msa1358170:CDS	30.0%
CTGATTCTTATCATAGTGTT+TGG	-	tig0016220:352261-352280	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016220	gene	351339	354495	351339	ID=Msa1358170;Name=Msa1358170
tig0016220	mRNA	351339	354495	351339	ID=Msa1358170-mRNA-1;Parent=Msa1358170;Name=Msa1358170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|2\|0\|981
tig0016220	exon	351339	353863	351339	ID=Msa1358170-mRNA-1:exon:10653;Parent=Msa1358170-mRNA-1
tig0016220	exon	354075	354495	354075	ID=Msa1358170-mRNA-1:exon:10654;Parent=Msa1358170-mRNA-1
tig0016220	CDS	351339	353863	351339	ID=Msa1358170-mRNA-1:cds;Parent=Msa1358170-mRNA-1
tig0016220	CDS	354075	354495	354075	ID=Msa1358170-mRNA-1:cds;Parent=Msa1358170-mRNA-1

Gene Sequence

>Msa1358170

ATGATCAACTTAAAGTTAGGGGTAGATGTGGTTGGTGCTCACAATCTACTACCCAAAGATGGAGAAGGCTCTTCTAATGCCTTTGTAGAACTTTACTTCGATGGCCAAAAGTTCCGAACAACCATTAAAGAAAAGGATCTTAATCCTGTTTGGAATGAGAGCTTCTACTTCAACATATCAGATCCTTCCAATCTACACTATCTCACTCTTGAAGCTTATGTCCATTGCCATTCCAAAGCTACTAACTCAAGTTCATTTCTTGGTAAAGTTAGACTCACAGGTACTTCTTTTGTCCCTCAAGCTGATGCAGTTGTCATGCACTATCCGTTGGAAAAGCGCGGGATTTTCTCTCGCGTAAGAGGTGAGCTTGGCCTTAAAATTTACATCACTGATAATCCAACCATAAAATCCTCAATTCCAAATCCTTCTGTTGAGTCCTTGCCAACAAATAATCATGCTGAAGTCCACGGACCTACGGGTTCAATGATGAATGGTTTGTCTCGTGACAAGGTTGAGTCCTCAAGACACACATTTCATCACCTCCCTAACACAAACCATCATCGGCATCAACATCAACAATCCACTGGCTATGCAGATACTCATTATGTACCGAAGTATGAAGCTGATGAAATGAAAGCTGATCAACCACAACCTATGAAGCTAGTACACATGCACTCAGTTACATCACTACAACCGGTTGATTTTGCACTTAAAGAAACAAGTCCGTTTCTCGGTGGAGGAAGGGTAGTTGGTGGTCGCGTTGTTCATAAAGACAAGACCGCAAGTACATATGATCTAGTTGAAAGGATGTACTTTTTGTATGTCAGGGTCGTTAAGGCTCGTGAGCTTCCTTCTATGGATCTTACTGGGAGTCTTGATCCATTTGTTGAGGTGAGAATTGGCAATTACAGAGGTATTACCAAACACTATGATAAGAATCAGAATCCGGAGTGGCATCAGGTTTTTGCATTTTCAAAGGAGAGAATGCAAGCATCTGTACTGGAAGTTGTGATCAAGGACAAAGATCTCATCAAAGATGATTTTGTAGGTATTGTGAGGTTTGACATCAATGAGATTCCTTTAAGAGTTCCACCAGATAGTCCTTTGGCACCCGAATGGTATCGACTTGACGACAAGAAAGGGGAGAAAGTTAAAGGTGAGTTGATGCTAGCTGTTTGGATTGGTACTCAAGCAGATGAAGCGTTTTCTGATGCATGGCATTCGGATGCAGCTTCACCTGTGGACAGCACGCCTGCTACTACAACAGTGATACGTTCAAAGGTCTATCATGCTCCGAGGTTGTGGTACGTTCGTGTCAATGTTGTAGAAGCACAAGACTTGATTCCAACGGAGAAAAACCGTTTCCCGGATGCATATGTCAAGGTGCAGATAGGAAACCAAGTGCTGAAAACAAAGACAGTTCCTGCTAGAACTCTAAACCCACAATGGAATGAAGATCTTTTGTTTGTTGCTGCCGAGCCTTTTGAAGATCATGTAATACTTTCGGTTGAAGATCGAGTTGGTCTGGGAAAAGATGAGATCATTGGGAGGGTTATCATACCGCTGAACGCTGTGGAGAGGCGTGCGGATGATAGAATCATTCATTCTAGATGGTTCAACTTGGAAAAGCCTGTTGCTGTGGATGTTGATCAGCTGAAGAGAGAAAAGTTTGCAAGCAGAATTCAGCTACGGCTATGTCTGGATGGAGGATATCATGTTCTTGATGAATCAACTCATTACAGCAGCGATCTACGCCCCACCGCAAAACAGTTATGGAGGCCACCAATTGGTGTTTTAGAACTCGGAGTGCTGAATGCAATAGGACTCCACCCAATGAAAACAAGGGATGGTAGAGGCACTTCTGATACATATTGTGTAGCAAAATACGGTCACAAATGGGTAAGAACAAGGACACTTGTTGACAACTTGTCGCCAAAATACAACGAGCAATACACTTGGGAGGTCTTTGATCCTGCCACAGTCCTCACAGTAGGTGTCTTTGACAATTCCCAAATCAGTGGTGAAAAGGGTCACAACAAAGACCTGAAAATTGGGAAGGTGAGAATTCGCATATCGACTCTTGAAACAGGACGGATTTACACACACTCATATCCATTGCTTGTTCTTCACCCAACTGGTGTTAAGAAAATGGGCGAACTTCACTTGGCAATAAGATTCTCATGCACTTCTTTTGCAAACATGCTTTACCTATACTCAAAACAACTTCTCCCGAAAATGCATTACGTTAGGCCATTCGCAGTGATGCAACTCGATATGCTACGTCACCAAGCAGTAAACATAGTGGCAGCGCGGCTCGGTCGAGCAGAGCCACCACTTCGTAAAGAAGTGGTGGAATACATGTCAGATGTTGACTCACATCTATGGAGCATGCGCCGTAGCAAGGCAAACTTCTTTCGCCTCATGACAGTTTTCTCTGGTGTGTTTGCAGTTGGAAAATGGTTAGGTGATATCTGCATGTGGTTAAATCCTATTACAACAGTCCTTGTTCATGTGTTGTTTCTCATGTACCGACCAAGATACCCTCCACACATGAACACAAGAATCTCACAGGCTGATGTAGTACACCCCGATGAAATGGATGAGGAATTTGATACTTTTCCAACAAGCAAAAATCCTGACCTTGTAAGAATGCGGTATGATCGTTTGAGGAGCGTGGCTGGTAGAATACAAACGGTTGTAGGTGATTTGGCTAGCCAGGGTGAGAGGATTCATGCACTGTTGAGCTGGAGAGATCCGCGTGCTACTTCTTTATTCATTACTTTCTGTTTGTTAGCTGCTTTGGTGTTATATGTTACTCCTTTTCAAATGGTGGCTGGTTTAGCAGGTTTCTATTTCATGAGGCATCCGAGATTTCGACACAGGCTTCCGTCTGCACCGATCAACTTCTTCCGTCGACTTCCTGCAAGAACTGATAGTATGTTGTAG

Protein sequence

>Msa1358170

MINLKLGVDVVGAHNLLPKDGEGSSNAFVELYFDGQKFRTTIKEKDLNPVWNESFYFNISDPSNLHYLTLEAYVHCHSKATNSSSFLGKVRLTGTSFVPQADAVVMHYPLEKRGIFSRVRGELGLKIYITDNPTIKSSIPNPSVESLPTNNHAEVHGPTGSMMNGLSRDKVESSRHTFHHLPNTNHHRHQHQQSTGYADTHYVPKYEADEMKADQPQPMKLVHMHSVTSLQPVDFALKETSPFLGGGRVVGGRVVHKDKTASTYDLVERMYFLYVRVVKARELPSMDLTGSLDPFVEVRIGNYRGITKHYDKNQNPEWHQVFAFSKERMQASVLEVVIKDKDLIKDDFVGIVRFDINEIPLRVPPDSPLAPEWYRLDDKKGEKVKGELMLAVWIGTQADEAFSDAWHSDAASPVDSTPATTTVIRSKVYHAPRLWYVRVNVVEAQDLIPTEKNRFPDAYVKVQIGNQVLKTKTVPARTLNPQWNEDLLFVAAEPFEDHVILSVEDRVGLGKDEIIGRVIIPLNAVERRADDRIIHSRWFNLEKPVAVDVDQLKREKFASRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWRPPIGVLELGVLNAIGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQISGEKGHNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSKQLLPKMHYVRPFAVMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWLGDICMWLNPITTVLVHVLFLMYRPRYPPHMNTRISQADVVHPDEMDEEFDTFPTSKNPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIHALLSWRDPRATSLFITFCLLAALVLYVTPFQMVAGLAGFYFMRHPRFRHRLPSAPINFFRRLPARTDSML*