Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411480 | sp|Q9M2R0|FTIP3_ARATH | 70.142 | 777 | 221 | 6 | 233 | 1007 | 6 | 773 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411480 | G7KC44 | 99.305 | 1007 | 7 | 0 | 1 | 1007 | 1 | 1007 | 0.0 | 2074 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1357950 | Msa1411480 | 0.994701 | 1.847052e-209 | -8.615850e-47 |
| Msa1358170 | Msa1411480 | 0.862613 | 4.476637e-64 | -8.615850e-47 |
| Msa0689180 | Msa1411480 | 0.863660 | 2.124703e-64 | -8.615850e-47 |
| Msa0753230 | Msa1411480 | 0.979230 | 1.628192e-147 | -8.615850e-47 |
| Msa0795490 | Msa1411480 | 0.956687 | 1.636290e-114 | -8.615850e-47 |
| Msa0147680 | Msa1411480 | 0.815642 | 8.328236e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411480 | MtrunA17_Chr5g0397601 | 99.305 | 1007 | 7 | 0 | 1 | 1007 | 1 | 1007 | 0.0 | 2074 |
| Msa1411480 | MtrunA17_Chr8g0349231 | 63.878 | 1016 | 345 | 11 | 1 | 1007 | 1 | 1003 | 0.0 | 1343 |
| Msa1411480 | MtrunA17_Chr7g0258331 | 69.191 | 779 | 227 | 6 | 233 | 1007 | 6 | 775 | 0.0 | 1156 |
| Msa1411480 | MtrunA17_Chr1g0174761 | 68.726 | 777 | 233 | 4 | 233 | 1007 | 6 | 774 | 0.0 | 1139 |
| Msa1411480 | MtrunA17_Chr4g0033151 | 67.788 | 773 | 238 | 4 | 235 | 1007 | 9 | 770 | 0.0 | 1124 |
| Msa1411480 | MtrunA17_Chr1g0174581 | 62.389 | 787 | 279 | 6 | 235 | 1007 | 14 | 797 | 0.0 | 1065 |
| Msa1411480 | MtrunA17_Chr4g0010751 | 64.465 | 757 | 257 | 6 | 259 | 1007 | 442 | 1194 | 0.0 | 1055 |
| Msa1411480 | MtrunA17_Chr4g0010751 | 32.673 | 202 | 135 | 1 | 4 | 204 | 1 | 202 | 5.27e-25 | 112 |
| Msa1411480 | MtrunA17_Chr3g0087501 | 62.326 | 791 | 277 | 9 | 235 | 1007 | 35 | 822 | 0.0 | 1052 |
| Msa1411480 | MtrunA17_Chr4g0014711 | 62.404 | 782 | 278 | 9 | 232 | 1007 | 273 | 1044 | 0.0 | 1026 |
| Msa1411480 | MtrunA17_Chr4g0014711 | 37.121 | 132 | 74 | 3 | 5 | 133 | 3 | 128 | 3.11e-16 | 84.0 |
| Msa1411480 | MtrunA17_Chr7g0247271 | 64.358 | 693 | 229 | 6 | 326 | 1007 | 281 | 966 | 0.0 | 936 |
| Msa1411480 | MtrunA17_Chr7g0247271 | 31.261 | 595 | 324 | 21 | 1 | 527 | 78 | 655 | 2.64e-59 | 220 |
| Msa1411480 | MtrunA17_Chr4g0060191 | 51.643 | 761 | 325 | 12 | 265 | 1007 | 303 | 1038 | 0.0 | 788 |
| Msa1411480 | MtrunA17_Chr4g0060191 | 48.485 | 132 | 64 | 1 | 5 | 132 | 18 | 149 | 1.11e-29 | 127 |
| Msa1411480 | MtrunA17_Chr4g0028371 | 50.697 | 789 | 358 | 10 | 232 | 1007 | 13 | 783 | 0.0 | 787 |
| Msa1411480 | MtrunA17_Chr6g0461151 | 50.262 | 764 | 340 | 13 | 263 | 1007 | 284 | 1026 | 0.0 | 774 |
| Msa1411480 | MtrunA17_Chr6g0461151 | 39.535 | 129 | 76 | 1 | 5 | 131 | 6 | 134 | 2.58e-22 | 103 |
| Msa1411480 | MtrunA17_Chr6g0460791 | 49.017 | 763 | 342 | 13 | 265 | 1007 | 274 | 1009 | 0.0 | 751 |
| Msa1411480 | MtrunA17_Chr6g0460791 | 44.186 | 129 | 71 | 1 | 5 | 132 | 11 | 139 | 1.64e-28 | 124 |
| Msa1411480 | MtrunA17_Chr4g0035961 | 48.092 | 786 | 326 | 11 | 235 | 1007 | 16 | 732 | 0.0 | 749 |
| Msa1411480 | MtrunA17_Chr1g0151051 | 41.935 | 806 | 431 | 14 | 221 | 1007 | 11 | 798 | 0.0 | 624 |
| Msa1411480 | MtrunA17_Chr5g0447321 | 38.462 | 793 | 442 | 15 | 230 | 1007 | 2 | 763 | 0.0 | 551 |
| Msa1411480 | MtrunA17_Chr4g0010641 | 60.769 | 130 | 49 | 1 | 877 | 1006 | 1 | 128 | 8.93e-49 | 169 |
| Msa1411480 | MtrunA17_Chr6g0461171 | 40.310 | 129 | 75 | 1 | 5 | 131 | 6 | 134 | 7.60e-26 | 106 |
| Msa1411480 | MtrunA17_Chr4g0010701 | 44.231 | 104 | 36 | 2 | 880 | 983 | 16 | 97 | 2.63e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411480 | AT4G11610.2 | 75.636 | 1022 | 217 | 8 | 1 | 1007 | 3 | 1007 | 0.0 | 1626 |
| Msa1411480 | AT4G11610.1 | 75.440 | 1022 | 223 | 8 | 1 | 1007 | 3 | 1011 | 0.0 | 1624 |
| Msa1411480 | AT4G11610.3 | 77.093 | 860 | 179 | 6 | 163 | 1007 | 18 | 874 | 0.0 | 1403 |
| Msa1411480 | AT4G00700.1 | 56.598 | 1023 | 411 | 10 | 1 | 1007 | 1 | 1006 | 0.0 | 1189 |
| Msa1411480 | AT4G00700.2 | 56.598 | 1023 | 411 | 10 | 1 | 1007 | 1 | 1006 | 0.0 | 1189 |
| Msa1411480 | AT3G57880.4 | 70.142 | 777 | 221 | 6 | 233 | 1007 | 6 | 773 | 0.0 | 1174 |
| Msa1411480 | AT3G57880.2 | 70.142 | 777 | 221 | 6 | 233 | 1007 | 6 | 773 | 0.0 | 1174 |
| Msa1411480 | AT3G57880.3 | 70.142 | 777 | 221 | 6 | 233 | 1007 | 6 | 773 | 0.0 | 1174 |
| Msa1411480 | AT3G57880.1 | 70.142 | 777 | 221 | 6 | 233 | 1007 | 6 | 773 | 0.0 | 1174 |
| Msa1411480 | AT5G12970.1 | 69.716 | 776 | 223 | 4 | 232 | 1007 | 6 | 769 | 0.0 | 1152 |
| Msa1411480 | AT1G51570.1 | 68.935 | 779 | 230 | 5 | 233 | 1007 | 6 | 776 | 0.0 | 1149 |
| Msa1411480 | AT1G22610.1 | 54.938 | 1043 | 414 | 15 | 5 | 1007 | 3 | 1029 | 0.0 | 1139 |
| Msa1411480 | AT5G48060.1 | 53.104 | 1047 | 431 | 14 | 5 | 1007 | 6 | 1036 | 0.0 | 1105 |
| Msa1411480 | AT3G61300.1 | 53.682 | 1032 | 392 | 22 | 1 | 1007 | 2 | 972 | 0.0 | 1102 |
| Msa1411480 | AT5G06850.1 | 62.468 | 786 | 279 | 6 | 235 | 1007 | 12 | 794 | 0.0 | 1079 |
| Msa1411480 | AT1G04150.1 | 51.597 | 1033 | 442 | 17 | 3 | 1007 | 10 | 1012 | 0.0 | 1033 |
| Msa1411480 | AT1G74720.1 | 43.446 | 1091 | 508 | 21 | 2 | 1007 | 15 | 1081 | 0.0 | 882 |
| Msa1411480 | AT4G20080.1 | 54.685 | 779 | 327 | 10 | 236 | 1007 | 15 | 774 | 0.0 | 870 |
| Msa1411480 | AT5G17980.1 | 49.472 | 758 | 348 | 12 | 263 | 1007 | 314 | 1049 | 0.0 | 774 |
| Msa1411480 | AT5G17980.1 | 39.716 | 141 | 79 | 3 | 5 | 139 | 6 | 146 | 1.26e-22 | 105 |
| Msa1411480 | AT3G03680.1 | 49.485 | 776 | 327 | 19 | 265 | 1007 | 274 | 1017 | 0.0 | 761 |
| Msa1411480 | AT3G03680.1 | 40.625 | 128 | 76 | 0 | 5 | 132 | 8 | 135 | 7.60e-26 | 115 |
| Msa1411480 | AT3G61720.1 | 38.300 | 812 | 439 | 22 | 235 | 1007 | 7 | 795 | 4.26e-160 | 492 |
| Msa1411480 | AT5G03435.1 | 40.385 | 780 | 404 | 25 | 235 | 1000 | 7 | 739 | 1.05e-156 | 481 |
| Msa1411480 | AT5G03435.2 | 42.586 | 580 | 296 | 16 | 235 | 807 | 7 | 556 | 3.03e-129 | 403 |
| Msa1411480 | AT5G44760.1 | 47.044 | 406 | 164 | 10 | 235 | 635 | 5 | 364 | 2.63e-108 | 345 |
| Msa1411480 | AT1G03370.2 | 36.885 | 122 | 73 | 2 | 274 | 393 | 3 | 122 | 1.60e-14 | 79.0 |
| Msa1411480 | AT1G03370.1 | 36.885 | 122 | 73 | 2 | 274 | 393 | 3 | 122 | 1.98e-14 | 78.6 |
Find 232 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAACAAAGACTTGAAAAT+TGG | 0.180427 | tig0023792:-4000 | Msa1411480:CDS |
| CCCAACTGGTGTTAAGAAAA+TGG | 0.211222 | tig0023792:-3902 | Msa1411480:CDS |
| AGAAGAGCCTTCTCCATCTT+TGG | 0.233433 | tig0023792:+5982 | None:intergenic |
| TCAGCACTTGGTTTCCTATC+TGG | 0.237936 | tig0023792:+4646 | None:intergenic |
| CTATCTGGTGGAACTCTTAA+AGG | 0.240838 | tig0023792:+4954 | None:intergenic |
| ATTATGATCAACTTAAAGTT+AGG | 0.248856 | tig0023792:-6037 | Msa1411480:CDS |
| GGCTCGTGAGCTTCCTTCTA+TGG | 0.253047 | tig0023792:-5195 | Msa1411480:CDS |
| CGGAAGCCTGTTTCGAAATC+TGG | 0.258205 | tig0023792:+2925 | None:intergenic |
| ACTAACTCAAGTTCATTTCT+TGG | 0.266395 | tig0023792:-5794 | Msa1411480:CDS |
| GTGTATTGCTCGTTGTATTT+TGG | 0.268384 | tig0023792:+4099 | None:intergenic |
| TAATGGTTGTTCGAAACTTT+TGG | 0.275614 | tig0023792:+5930 | None:intergenic |
| TCTCATGTTGGTTTGCTTCC+CGG | 0.299961 | tig0023792:-3512 | Msa1411480:CDS |
| TTTCTGTTTGTTAGCTGCTT+TGG | 0.314831 | tig0023792:-3011 | Msa1411480:CDS |
| TGCCGTTGATGGTTTGTGTT+AGG | 0.316788 | tig0023792:+5491 | None:intergenic |
| CTCGGTGGAGGAAGGGTTGT+TGG | 0.318759 | tig0023792:-5302 | Msa1411480:CDS |
| TGAACTTGAGTTAGTAGCTT+TGG | 0.320839 | tig0023792:+5802 | None:intergenic |
| GTGTGTTTGCAGTTGGAAAA+TGG | 0.332879 | tig0023792:-3594 | Msa1411480:CDS |
| ATCGTCAAGGCGATACCATT+CGG | 0.343035 | tig0023792:+4920 | None:intergenic |
| TTTCTCTACCTATTCTTGAT+AGG | 0.343636 | tig0023792:-3469 | Msa1411480:CDS |
| CTGATTCTTATCATAGTGTT+TGG | 0.343905 | tig0023792:+5112 | None:intergenic |
| AAGAAAGGGGAGAAAGTTAA+AGG | 0.345361 | tig0023792:-4897 | Msa1411480:CDS |
| AAAAGGATCTTAATCCTGTT+TGG | 0.345946 | tig0023792:-5904 | Msa1411480:CDS |
| TGATAGGTGTATGGAACTTC+AGG | 0.347349 | tig0023792:-3453 | Msa1411480:intron |
| GTTGATGCTGATGCCGTTGA+TGG | 0.350294 | tig0023792:+5480 | None:intergenic |
| TGAAGATCATGTAATACTTT+CGG | 0.351594 | tig0023792:-4547 | Msa1411480:CDS |
| TGAACAAGGACTGTTGTAAT+AGG | 0.354570 | tig0023792:+3544 | None:intergenic |
| CTTCCTTCTATGGATCTTAC+CGG | 0.373034 | tig0023792:-5185 | Msa1411480:CDS |
| CAGATGTTGACTCACATCTA+TGG | 0.373205 | tig0023792:-3669 | Msa1411480:CDS |
| GGCATCCCAGATTTCGAAAC+AGG | 0.373780 | tig0023792:-2931 | Msa1411480:CDS |
| TTGCTTGTTCTTCACCCAAC+TGG | 0.374868 | tig0023792:-3916 | Msa1411480:CDS |
| TCGGGTGCCAAAGGACTATC+TGG | 0.383261 | tig0023792:+4939 | None:intergenic |
| ACAAACGGTTGTAGGTGATT+TGG | 0.383411 | tig0023792:-3104 | Msa1411480:CDS |
| GAAGAGCCTTCTCCATCTTT+GGG | 0.384950 | tig0023792:+5983 | None:intergenic |
| TTCCCAAATCAGTGGTGAAA+AGG | 0.392570 | tig0023792:-4025 | Msa1411480:CDS |
| CAAATGGTGGCTGGTTTAGC+AGG | 0.392665 | tig0023792:-2968 | Msa1411480:CDS |
| CCATTTGTTGAGGTGAGAAT+TGG | 0.401775 | tig0023792:-5152 | Msa1411480:CDS |
| ATAGAATCATTCATTCTAGA+TGG | 0.401919 | tig0023792:-4440 | Msa1411480:CDS |
| TCGTCAAGGCGATACCATTC+GGG | 0.407136 | tig0023792:+4921 | None:intergenic |
| TAGCAAAATACGGTCACAAA+TGG | 0.411100 | tig0023792:-4155 | Msa1411480:CDS |
| TGTAGGTGATTTGGCTAGCC+AGG | 0.412061 | tig0023792:-3095 | Msa1411480:CDS |
| CCAATTCTCACCTCAACAAA+TGG | 0.417160 | tig0023792:+5152 | None:intergenic |
| TGATCAACATCCACGGCAAC+AGG | 0.420405 | tig0023792:+4402 | None:intergenic |
| AAAGATCTTCATTCCATTGT+GGG | 0.420444 | tig0023792:+4592 | None:intergenic |
| TACCGCATTCTTACAAGGTC+AGG | 0.427894 | tig0023792:+3157 | None:intergenic |
| ATGGACTCAACAGAAGGATT+TGG | 0.428137 | tig0023792:+5617 | None:intergenic |
| GTGAGTTGATGCTAGCTGTT+TGG | 0.429438 | tig0023792:-4875 | Msa1411480:CDS |
| TTATGATCAACTTAAAGTTA+GGG | 0.431458 | tig0023792:-6036 | Msa1411480:CDS |
| AATTCCTCATCCATTTCATC+GGG | 0.432095 | tig0023792:+3205 | None:intergenic |
| AACATACTATCAGTTCTTGC+AGG | 0.433599 | tig0023792:+2872 | None:intergenic |
| TCATGTGTTGTTTCTCATGT+TGG | 0.437544 | tig0023792:-3524 | Msa1411480:CDS |
| TCAGAATCCGGAGTGGCATC+AGG | 0.438503 | tig0023792:-5093 | Msa1411480:CDS |
| TCTTTAAGTGCAAAATCAAC+CGG | 0.439305 | tig0023792:+5338 | None:intergenic |
| CCGGGAAAAGATGAGATCAT+TGG | 0.439731 | tig0023792:-4507 | Msa1411480:CDS |
| AAAGAAACAAGTCCGTTTCT+CGG | 0.443107 | tig0023792:-5320 | Msa1411480:CDS |
| TCGAACAACCATTAAAGAAA+AGG | 0.443124 | tig0023792:-5921 | Msa1411480:CDS |
| CTCAGTTACATCACTACAAC+CGG | 0.443547 | tig0023792:-5357 | Msa1411480:CDS |
| GGTTGAAGATCGAGTTGGTC+CGG | 0.444254 | tig0023792:-4526 | Msa1411480:CDS |
| CGCATATCGACTCTTGAAAC+AGG | 0.446486 | tig0023792:-3964 | Msa1411480:CDS |
| TTCATGTGTGGAGGGTATCT+TGG | 0.447757 | tig0023792:+3259 | None:intergenic |
| ACAACAAAGACTTGAAAATT+GGG | 0.452516 | tig0023792:-3999 | Msa1411480:CDS |
| ACCTATTCTTGATAGGTGTA+TGG | 0.457302 | tig0023792:-3462 | Msa1411480:CDS |
| AATTCAGCTACGGCTATGTC+TGG | 0.461073 | tig0023792:-4352 | Msa1411480:CDS |
| AATAATCATGCTGAAGTCCT+TGG | 0.461850 | tig0023792:-5587 | Msa1411480:CDS |
| CCGAGTTCTAAAACACCAAT+TGG | 0.462500 | tig0023792:+4249 | None:intergenic |
| GCCCCACTGCAAAACAGTTA+TGG | 0.464071 | tig0023792:-4278 | Msa1411480:CDS |
| CCAACTGGTGTTAAGAAAAT+GGG | 0.464187 | tig0023792:-3901 | Msa1411480:CDS |
| GTTGAAGATCGAGTTGGTCC+GGG | 0.464534 | tig0023792:-4525 | Msa1411480:CDS |
| TAGAAGCTCTCATTCCAAAC+AGG | 0.467298 | tig0023792:+5890 | None:intergenic |
| AAGAGTGAGATAGTGAAGAT+TGG | 0.467768 | tig0023792:+5847 | None:intergenic |
| GGATTCATGCACTGTTGAGC+TGG | 0.468052 | tig0023792:-3066 | Msa1411480:CDS |
| TGCTGAAGTCCTTGGACCTA+CGG | 0.468797 | tig0023792:-5579 | Msa1411480:CDS |
| CTCGGAGTGCTGAATGCAAT+AGG | 0.474307 | tig0023792:-4231 | Msa1411480:CDS |
| CGGGAAAAGATGAGATCATT+GGG | 0.475103 | tig0023792:-4506 | Msa1411480:CDS |
| TCTATCATGCTCCGAGGTTG+TGG | 0.475877 | tig0023792:-4749 | Msa1411480:CDS |
| ACCCTTCCTCCACCGAGAAA+CGG | 0.478302 | tig0023792:+5308 | None:intergenic |
| CTTGGCAAAGTTAGCCTCAC+AGG | 0.478373 | tig0023792:-5776 | Msa1411480:CDS |
| TCCCAAATCAGTGGTGAAAA+GGG | 0.479687 | tig0023792:-4024 | Msa1411480:CDS |
| GCCGTTGATGGTTTGTGTTA+GGG | 0.479912 | tig0023792:+5492 | None:intergenic |
| TGACATATGCATCCGGGAAA+CGG | 0.482033 | tig0023792:+4673 | None:intergenic |
| AGCATGATTATTTGTCGGCA+TGG | 0.485124 | tig0023792:+5598 | None:intergenic |
| GCATATGTCAAGGTCCAGAT+AGG | 0.486634 | tig0023792:-4660 | Msa1411480:CDS |
| AACAGAAGGATTTGGAATTG+AGG | 0.489461 | tig0023792:+5625 | None:intergenic |
| CTCCACAGCGTTCAGCGGTA+TGG | 0.490783 | tig0023792:+4476 | None:intergenic |
| GTCCGTTTCTCGGTGGAGGA+AGG | 0.491607 | tig0023792:-5310 | Msa1411480:CDS |
| ACATATTGTGTAGCAAAATA+CGG | 0.491890 | tig0023792:-4165 | Msa1411480:CDS |
| TGTAGTACACCCCGATGAAA+TGG | 0.494237 | tig0023792:-3215 | Msa1411480:CDS |
| TGGACCTTGACATATGCATC+CGG | 0.494944 | tig0023792:+4666 | None:intergenic |
| AGTTCCACCAGATAGTCCTT+TGG | 0.496430 | tig0023792:-4946 | Msa1411480:CDS |
| GGTAGAATACAAACGGTTGT+AGG | 0.496800 | tig0023792:-3112 | Msa1411480:CDS |
| ACTTCAGCATGATTATTTGT+CGG | 0.497495 | tig0023792:+5593 | None:intergenic |
| GTGAGATAGTGAAGATTGGA+AGG | 0.498614 | tig0023792:+5851 | None:intergenic |
| GATCGTTTGAGGAGCGTGGC+TGG | 0.499227 | tig0023792:-3133 | Msa1411480:CDS |
| CTGCCACTATGTTTACTGCT+TGG | 0.501177 | tig0023792:+3746 | None:intergenic |
| AAATTCCTCATCCATTTCAT+CGG | 0.503321 | tig0023792:+3204 | None:intergenic |
| CCTACGGGTTCAATGATGAA+TGG | 0.504774 | tig0023792:-5563 | Msa1411480:CDS |
| AGTATTACATGATCTTCAAA+AGG | 0.505539 | tig0023792:+4552 | None:intergenic |
| GCTGAAGTCCTTGGACCTAC+GGG | 0.505888 | tig0023792:-5578 | Msa1411480:CDS |
| TCATTCTAGATGGTTCAACT+TGG | 0.507484 | tig0023792:-4430 | Msa1411480:CDS |
| CGTATCACTGTCGTAGTAGC+AGG | 0.507663 | tig0023792:+4780 | None:intergenic |
| ATCGCCTTGACGATAAGAAA+GGG | 0.511259 | tig0023792:-4911 | Msa1411480:CDS |
| AACATAGTGGCAGCGCGGCT+CGG | 0.511333 | tig0023792:-3736 | Msa1411480:CDS |
| GGAAGCCTGTTTCGAAATCT+GGG | 0.513817 | tig0023792:+2926 | None:intergenic |
| TTTGCAGTTGGAAAATGGTT+AGG | 0.514024 | tig0023792:-3589 | Msa1411480:CDS |
| TGTACTAGAAGTTGTGATCA+AGG | 0.515018 | tig0023792:-5036 | Msa1411480:CDS |
| AAAAGATCTTCATTCCATTG+TGG | 0.517456 | tig0023792:+4591 | None:intergenic |
| CAGTTATGGAGGCCACCAAT+TGG | 0.517888 | tig0023792:-4264 | Msa1411480:CDS |
| GAAAGAAGTTTGCCTTGCTA+CGG | 0.518974 | tig0023792:+3638 | None:intergenic |
| TTTGTATGTCAGGGTCGTTA+AGG | 0.519023 | tig0023792:-5216 | Msa1411480:CDS |
| AAACCAGCCACCATTTGAAA+AGG | 0.520236 | tig0023792:+2974 | None:intergenic |
| ACAAGTCCGTTTCTCGGTGG+AGG | 0.522181 | tig0023792:-5314 | Msa1411480:CDS |
| TCCCGAAAATGCATTACGTT+AGG | 0.522411 | tig0023792:-3804 | Msa1411480:CDS |
| TGTACTAGCTTCATAGGTTG+TGG | 0.523049 | tig0023792:+5386 | None:intergenic |
| TGCATGTGTACTAGCTTCAT+AGG | 0.523340 | tig0023792:+5380 | None:intergenic |
| AGCAAAATACGGTCACAAAT+GGG | 0.523407 | tig0023792:-4154 | Msa1411480:CDS |
| CACAATCTACTACCCAAAGA+TGG | 0.523857 | tig0023792:-5995 | Msa1411480:CDS |
| TTTGTAGAACTTTACTTCGA+CGG | 0.525442 | tig0023792:-5953 | Msa1411480:CDS |
| CTCCCGGTAAGATCCATAGA+AGG | 0.525748 | tig0023792:+5182 | None:intergenic |
| CTATGATAAGAATCAGAATC+CGG | 0.528818 | tig0023792:-5105 | Msa1411480:CDS |
| TCCGTTTCTCGGTGGAGGAA+GGG | 0.529722 | tig0023792:-5309 | Msa1411480:CDS |
| TAGTAGCTTTGGAATGGCAG+TGG | 0.529952 | tig0023792:+5813 | None:intergenic |
| TCTCGCGTAAGAGGTGAGCT+TGG | 0.536637 | tig0023792:-5686 | Msa1411480:CDS |
| ATTTCATCAGCTTCATACTT+CGG | 0.537653 | tig0023792:+5422 | None:intergenic |
| GAATGCGGTATGATCGTTTG+AGG | 0.538021 | tig0023792:-3144 | Msa1411480:CDS |
| TTGATGCTAGCTGTTTGGAT+TGG | 0.541583 | tig0023792:-4870 | Msa1411480:CDS |
| GAGTCTTGATCCATTTGTTG+AGG | 0.542333 | tig0023792:-5162 | Msa1411480:CDS |
| TACATGATCTTCAAAAGGCT+CGG | 0.542481 | tig0023792:+4557 | None:intergenic |
| TCCATACACCTATCAAGAAT+AGG | 0.544412 | tig0023792:+3461 | None:intergenic |
| TCTCCCCTTTCTTATCGTCA+AGG | 0.547579 | tig0023792:+4907 | None:intergenic |
| TATCGCCTTGACGATAAGAA+AGG | 0.548988 | tig0023792:-4912 | Msa1411480:CDS |
| GGTGGAGGAAGGGTTGTTGG+CGG | 0.552425 | tig0023792:-5299 | Msa1411480:CDS |
| AAGTTAGGGGTAGATGTGGT+TGG | 0.552972 | tig0023792:-6022 | Msa1411480:CDS |
| TTGAGTTAGTAGCTTTGGAA+TGG | 0.553431 | tig0023792:+5807 | None:intergenic |
| AAGAAGTTGATCGGTGCAGA+CGG | 0.553790 | tig0023792:+2905 | None:intergenic |
| GATCATACCGCATTCTTACA+AGG | 0.554571 | tig0023792:+3152 | None:intergenic |
| GTAGGTGATTTGGCTAGCCA+GGG | 0.554831 | tig0023792:-3094 | Msa1411480:CDS |
| TGTGGGTTTAGAGTTCTAGC+AGG | 0.559920 | tig0023792:+4609 | None:intergenic |
| GTGTAGGCAAAATCAACTCC+GGG | 0.562576 | tig0023792:+3494 | None:intergenic |
| ATGGAGCATGCGCCGTAGCA+AGG | 0.566672 | tig0023792:-3650 | Msa1411480:CDS |
| AACTAGATCATATGTACTTG+CGG | 0.568364 | tig0023792:+5253 | None:intergenic |
| TTCTTGTGTTCATGTGTGGA+GGG | 0.569126 | tig0023792:+3251 | None:intergenic |
| ATTCTTGTGTTCATGTGTGG+AGG | 0.569293 | tig0023792:+3250 | None:intergenic |
| AAGACAACTGCATCAGCTTG+AGG | 0.569540 | tig0023792:+5740 | None:intergenic |
| AGTGTAGGCAAAATCAACTC+CGG | 0.570441 | tig0023792:+3493 | None:intergenic |
| CGCCTCTCCACAGCGTTCAG+CGG | 0.570587 | tig0023792:+4471 | None:intergenic |
| ATTTGGCTAGCCAGGGTGAG+AGG | 0.571757 | tig0023792:-3087 | Msa1411480:CDS |
| CAGCATCAACAACACTCCAC+TGG | 0.572183 | tig0023792:-5467 | Msa1411480:CDS |
| CTTAAAGTTAGGGGTAGATG+TGG | 0.572186 | tig0023792:-6026 | Msa1411480:CDS |
| CTTTCGGTTGAAGATCGAGT+TGG | 0.574501 | tig0023792:-4531 | Msa1411480:CDS |
| AGACAACTGCATCAGCTTGA+GGG | 0.574535 | tig0023792:+5741 | None:intergenic |
| AACAAATGGATCAAGACTCC+CGG | 0.576070 | tig0023792:+5166 | None:intergenic |
| CGTGGCTGGTAGAATACAAA+CGG | 0.577843 | tig0023792:-3119 | Msa1411480:CDS |
| TTCCTTCTATGGATCTTACC+GGG | 0.579035 | tig0023792:-5184 | Msa1411480:CDS |
| ACTATCCGTTGGAAAAGCGC+GGG | 0.579782 | tig0023792:-5715 | Msa1411480:CDS |
| CCTACTGTGAGGACTGTGGC+AGG | 0.580485 | tig0023792:+4060 | None:intergenic |
| CACTATCCGTTGGAAAAGCG+CGG | 0.582031 | tig0023792:-5716 | Msa1411480:CDS |
| TAGCAGGTTTCTATTTCATG+AGG | 0.582086 | tig0023792:-2952 | Msa1411480:CDS |
| CGATACCATTCGGGTGCCAA+AGG | 0.582226 | tig0023792:+4930 | None:intergenic |
| CTACTACCCAAAGATGGAGA+AGG | 0.583168 | tig0023792:-5989 | Msa1411480:CDS |
| AGTTGTCTTGCACTATCCGT+TGG | 0.586747 | tig0023792:-5726 | Msa1411480:CDS |
| CAGTTCTTGCAGGAAGTCGA+CGG | 0.588288 | tig0023792:+2882 | None:intergenic |
| GTCGGCATGGACTCAACAGA+AGG | 0.588951 | tig0023792:+5611 | None:intergenic |
| GAGATTCTTGTGTTCATGTG+TGG | 0.591639 | tig0023792:+3247 | None:intergenic |
| TTCAGATGCAGCTTCACCTG+TGG | 0.591854 | tig0023792:-4811 | Msa1411480:CDS |
| TACGACAGTGATACGTTCAA+AGG | 0.595585 | tig0023792:-4772 | Msa1411480:CDS |
| GACTCCACCCAATGAAAACA+AGG | 0.596227 | tig0023792:-4209 | Msa1411480:CDS |
| TCGAGTTGCATGACTGCGAA+TGG | 0.597451 | tig0023792:+3781 | None:intergenic |
| CTTGGAAAAGCCTGTTGCCG+TGG | 0.598251 | tig0023792:-4412 | Msa1411480:CDS |
| ACCGCTTCGTAAAGAAGTCG+TGG | 0.599851 | tig0023792:-3701 | Msa1411480:CDS |
| TCATTGAACCCGTAGGTCCA+AGG | 0.600468 | tig0023792:+5570 | None:intergenic |
| AGTTCTAAAACACCAATTGG+TGG | 0.601566 | tig0023792:+4252 | None:intergenic |
| GTGCATGAATCCTCTCACCC+TGG | 0.601936 | tig0023792:+3077 | None:intergenic |
| TTGCAAGCAGAATTCAGCTA+CGG | 0.601937 | tig0023792:-4362 | Msa1411480:CDS |
| GTACATATGATCTAGTTGAA+AGG | 0.603113 | tig0023792:-5247 | Msa1411480:CDS |
| TCCCTAACACAAACCATCAA+CGG | 0.603684 | tig0023792:-5493 | Msa1411480:CDS |
| CAGCTACGGCTATGTCTGGA+TGG | 0.603841 | tig0023792:-4348 | Msa1411480:CDS |
| GAAAATGGGAGAACTTCACT+TGG | 0.605162 | tig0023792:-3887 | Msa1411480:CDS |
| ACACCCCGATGAAATGGATG+AGG | 0.606414 | tig0023792:-3209 | Msa1411480:CDS |
| TATGATCAACTTAAAGTTAG+GGG | 0.607138 | tig0023792:-6035 | Msa1411480:CDS |
| TGTGTGGAGGGTATCTTGGT+CGG | 0.608323 | tig0023792:+3263 | None:intergenic |
| GGACCTTGACATATGCATCC+GGG | 0.608916 | tig0023792:+4667 | None:intergenic |
| GTCACAAATGGGTCAGAACA+AGG | 0.610662 | tig0023792:-4143 | Msa1411480:CDS |
| ATGAAAACAAGGGATGGTAG+AGG | 0.612015 | tig0023792:-4198 | Msa1411480:CDS |
| CTAGAACTCTAAACCCACAA+TGG | 0.614323 | tig0023792:-4605 | Msa1411480:CDS |
| CAAAGACTTGAAAATTGGGA+AGG | 0.616941 | tig0023792:-3995 | Msa1411480:CDS |
| CACCCAATGAAAACAAGGGA+TGG | 0.618631 | tig0023792:-4204 | Msa1411480:CDS |
| CATGAACACAAGAATCTCAC+AGG | 0.619367 | tig0023792:-3242 | Msa1411480:CDS |
| GTTGGGTGAAGAACAAGCAA+TGG | 0.619420 | tig0023792:+3919 | None:intergenic |
| ACGACTTCTTTACGAAGCGG+TGG | 0.619488 | tig0023792:+3703 | None:intergenic |
| ATAGTCCTTTGGCACCCGAA+TGG | 0.620871 | tig0023792:-4935 | Msa1411480:CDS |
| TACCGCTGAACGCTGTGGAG+AGG | 0.622911 | tig0023792:-4473 | Msa1411480:CDS |
| TCCACGACTTCTTTACGAAG+CGG | 0.627157 | tig0023792:+3700 | None:intergenic |
| CCTGCCACAGTCCTCACAGT+AGG | 0.628716 | tig0023792:-4060 | Msa1411480:CDS |
| GTGAGTATCTGCATATCCAG+TGG | 0.628850 | tig0023792:+5451 | None:intergenic |
| TTTGACAATTCCCAAATCAG+TGG | 0.630492 | tig0023792:-4033 | Msa1411480:CDS |
| ATCCTGACCTTGTAAGAATG+CGG | 0.634955 | tig0023792:-3159 | Msa1411480:CDS |
| AATACAACGAGCAATACACT+TGG | 0.635555 | tig0023792:-4095 | Msa1411480:CDS |
| AGCACAAGACTTGATTCCAA+CGG | 0.636163 | tig0023792:-4703 | Msa1411480:CDS |
| TACCATACCGCTGAACGCTG+TGG | 0.636602 | tig0023792:-4478 | Msa1411480:CDS |
| CTTCAGATGATCAACATCCA+CGG | 0.640502 | tig0023792:+4395 | None:intergenic |
| AGTCGACGGAAGAAGTTGAT+CGG | 0.641660 | tig0023792:+2896 | None:intergenic |
| GTCGAAGTAAAGTTCTACAA+AGG | 0.652130 | tig0023792:+5955 | None:intergenic |
| TCACCAAGCAGTAAACATAG+TGG | 0.653759 | tig0023792:-3749 | Msa1411480:CDS |
| GGTGCCAAAGGACTATCTGG+TGG | 0.654724 | tig0023792:+4942 | None:intergenic |
| GTTGATGGTTTGTGTTAGGG+AGG | 0.657066 | tig0023792:+5495 | None:intergenic |
| GAACGCTGTGGAGAGGCGTG+CGG | 0.658744 | tig0023792:-4466 | Msa1411480:CDS |
| AAAAGATGAGATCATTGGGA+GGG | 0.659454 | tig0023792:-4502 | Msa1411480:CDS |
| CCATTCATCATTGAACCCGT+AGG | 0.661796 | tig0023792:+5563 | None:intergenic |
| TGAGAAACAACACATGAACA+AGG | 0.662150 | tig0023792:+3530 | None:intergenic |
| CCACTGCAAAACAGTTATGG+AGG | 0.665722 | tig0023792:-4275 | Msa1411480:CDS |
| GTGATGAAATGTGTGTCTTG+AGG | 0.667671 | tig0023792:+5517 | None:intergenic |
| CTACGGCTATGTCTGGATGG+AGG | 0.669332 | tig0023792:-4345 | Msa1411480:CDS |
| GTGAGAATTGGCAATTACAG+AGG | 0.669944 | tig0023792:-5140 | Msa1411480:CDS |
| TTTCCCGGATGCATATGTCA+AGG | 0.673533 | tig0023792:-4670 | Msa1411480:CDS |
| TCGCCTTGACGATAAGAAAG+GGG | 0.675420 | tig0023792:-4910 | Msa1411480:CDS |
| GAAACAAGTCCGTTTCTCGG+TGG | 0.679691 | tig0023792:-5317 | Msa1411480:CDS |
| GTATGATCGTTTGAGGAGCG+TGG | 0.680386 | tig0023792:-3137 | Msa1411480:CDS |
| ACACGAACGTACCACAACCT+CGG | 0.680879 | tig0023792:+4738 | None:intergenic |
| GGTTAGGTGATATTTGCATG+TGG | 0.684481 | tig0023792:-3573 | Msa1411480:CDS |
| GAAAAGATGAGATCATTGGG+AGG | 0.684584 | tig0023792:-4503 | Msa1411480:CDS |
| ATACAACGAGCAATACACTT+GGG | 0.691267 | tig0023792:-4094 | Msa1411480:CDS |
| TATCGACTCTTGAAACAGGA+CGG | 0.694274 | tig0023792:-3960 | Msa1411480:CDS |
| CAACGAGCAATACACTTGGG+AGG | 0.698127 | tig0023792:-4091 | Msa1411480:CDS |
| GAATGGTTTATCTCGTGACA+AGG | 0.701389 | tig0023792:-5546 | Msa1411480:CDS |
| ACTCCACCCAATGAAAACAA+GGG | 0.702014 | tig0023792:-4208 | Msa1411480:CDS |
| GACACCTACTGTGAGGACTG+TGG | 0.709482 | tig0023792:+4056 | None:intergenic |
| CAAAGGTCTATCATGCTCCG+AGG | 0.711392 | tig0023792:-4755 | Msa1411480:CDS |
| ATGAATAAAGAAGTAGCACG+CGG | 0.714106 | tig0023792:+3037 | None:intergenic |
| CAGTAAACATAGTGGCAGCG+CGG | 0.720769 | tig0023792:-3741 | Msa1411480:CDS |
| TGTCAAAGACACCTACTGTG+AGG | 0.734255 | tig0023792:+4049 | None:intergenic |
| ATAAGAATCAGAATCCGGAG+TGG | 0.742906 | tig0023792:-5100 | Msa1411480:CDS |
| ATTCCTCATCCATTTCATCG+GGG | 0.747292 | tig0023792:+3206 | None:intergenic |
| GGACAAAAGAAGTACCTGTG+AGG | 0.754029 | tig0023792:+5762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGATCCTTTTCTTTAA+TGG | + | tig0023792:2992-3011 | None:intergenic | 20.0% |
| !!! | TATCAGTGATGTAAATTTTA+AGG | + | tig0023792:3242-3261 | None:intergenic | 20.0% |
| !! | TATGCAATCATGTATAAATA+GGG | + | tig0023792:5536-5555 | None:intergenic | 20.0% |
| !! | ATATGCAATCATGTATAAAT+AGG | + | tig0023792:5537-5556 | None:intergenic | 20.0% |
| !!! | ATTTGGAATTGAGGATTTTA+TGG | + | tig0023792:3271-3290 | None:intergenic | 25.0% |
| !!! | GATGTATTTTTTGTATGTCA+GGG | - | tig0023792:3677-3696 | Msa1411480:CDS | 25.0% |
| ! | AGTATTACATGATCTTCAAA+AGG | + | tig0023792:4353-4372 | None:intergenic | 25.0% |
| ! | TGAAGATCATGTAATACTTT+CGG | - | tig0023792:4355-4374 | Msa1411480:CDS | 25.0% |
| ! | ATAGAATCATTCATTCTAGA+TGG | - | tig0023792:4462-4481 | Msa1411480:CDS | 25.0% |
| ! | ACATATTGTGTAGCAAAATA+CGG | - | tig0023792:4737-4756 | Msa1411480:CDS | 25.0% |
| ! | ACAACAAAGACTTGAAAATT+GGG | - | tig0023792:4903-4922 | Msa1411480:CDS | 25.0% |
| ! | CCTGATATTGAAAATAAAGT+TGG | + | tig0023792:5617-5636 | None:intergenic | 25.0% |
| !!! | CCAACTTTATTTTCAATATC+AGG | - | tig0023792:5614-5633 | Msa1411480:CDS | 25.0% |
| !! | ATATGTTACTCCTTTTCAAA+TGG | - | tig0023792:5918-5937 | Msa1411480:CDS | 25.0% |
| TTTGTAGAACTTTACTTCGA+CGG | - | tig0023792:2949-2968 | Msa1411480:CDS | 30.0% | |
| ! | TAATGGTTGTTCGAAACTTT+TGG | + | tig0023792:2975-2994 | None:intergenic | 30.0% |
| TCGAACAACCATTAAAGAAA+AGG | - | tig0023792:2981-3000 | Msa1411480:CDS | 30.0% | |
| AAAAGGATCTTAATCCTGTT+TGG | - | tig0023792:2998-3017 | Msa1411480:CDS | 30.0% | |
| ACTAACTCAAGTTCATTTCT+TGG | - | tig0023792:3108-3127 | Msa1411480:CDS | 30.0% | |
| ACTTCAGCATGATTATTTGT+CGG | + | tig0023792:3312-3331 | None:intergenic | 30.0% | |
| ATTTCATCAGCTTCATACTT+CGG | + | tig0023792:3483-3502 | None:intergenic | 30.0% | |
| TCTTTAAGTGCAAAATCAAC+CGG | + | tig0023792:3567-3586 | None:intergenic | 30.0% | |
| AACTAGATCATATGTACTTG+CGG | + | tig0023792:3652-3671 | None:intergenic | 30.0% | |
| GTACATATGATCTAGTTGAA+AGG | - | tig0023792:3655-3674 | Msa1411480:CDS | 30.0% | |
| !!! | GGATGTATTTTTTGTATGTC+AGG | - | tig0023792:3676-3695 | Msa1411480:CDS | 30.0% |
| CTGATTCTTATCATAGTGTT+TGG | + | tig0023792:3793-3812 | None:intergenic | 30.0% | |
| CTATGATAAGAATCAGAATC+CGG | - | tig0023792:3797-3816 | Msa1411480:CDS | 30.0% | |
| ! | TCAGGTTTTTGCATTTTCAA+AGG | - | tig0023792:3827-3846 | Msa1411480:CDS | 30.0% |
| ! | CTCATCAAAGATGATTTTGT+AGG | - | tig0023792:3897-3916 | Msa1411480:CDS | 30.0% |
| !! | ATGATTTTGTAGGTATTGTG+AGG | - | tig0023792:3907-3926 | Msa1411480:CDS | 30.0% |
| AAAGATCTTCATTCCATTGT+GGG | + | tig0023792:4313-4332 | None:intergenic | 30.0% | |
| AAAAGATCTTCATTCCATTG+TGG | + | tig0023792:4314-4333 | None:intergenic | 30.0% | |
| CACAACAAAGACTTGAAAAT+TGG | - | tig0023792:4902-4921 | Msa1411480:CDS | 30.0% | |
| ! | AATAGGTAGAGAAAAAGTGT+AGG | + | tig0023792:5427-5446 | None:intergenic | 30.0% |
| TTTCTCTACCTATTCTTGAT+AGG | - | tig0023792:5433-5452 | Msa1411480:CDS | 30.0% | |
| AAATTCCTCATCCATTTCAT+CGG | + | tig0023792:5701-5720 | None:intergenic | 30.0% | |
| GTCGAAGTAAAGTTCTACAA+AGG | + | tig0023792:2950-2969 | None:intergenic | 35.0% | |
| AAGAGTGAGATAGTGAAGAT+TGG | + | tig0023792:3058-3077 | None:intergenic | 35.0% | |
| !! | TTGAGTTAGTAGCTTTGGAA+TGG | + | tig0023792:3098-3117 | None:intergenic | 35.0% |
| TGAACTTGAGTTAGTAGCTT+TGG | + | tig0023792:3103-3122 | None:intergenic | 35.0% | |
| ! | GGAATTGAGGATTTTATGGT+TGG | + | tig0023792:3267-3286 | None:intergenic | 35.0% |
| ! | AACAGAAGGATTTGGAATTG+AGG | + | tig0023792:3280-3299 | None:intergenic | 35.0% |
| AATAATCATGCTGAAGTCCT+TGG | - | tig0023792:3315-3334 | Msa1411480:intron | 35.0% | |
| AAAGAAACAAGTCCGTTTCT+CGG | - | tig0023792:3582-3601 | Msa1411480:CDS | 35.0% | |
| TGTACTAGAAGTTGTGATCA+AGG | - | tig0023792:3866-3885 | Msa1411480:CDS | 35.0% | |
| AAGAAAGGGGAGAAAGTTAA+AGG | - | tig0023792:4005-4024 | Msa1411480:CDS | 35.0% | |
| !! | ATGAAGCATTTTCTGATGCA+TGG | - | tig0023792:4066-4085 | Msa1411480:CDS | 35.0% |
| !!! | CTGTTTTTGTTTTCAGCACT+TGG | + | tig0023792:4271-4290 | None:intergenic | 35.0% |
| TACATGATCTTCAAAAGGCT+CGG | + | tig0023792:4348-4367 | None:intergenic | 35.0% | |
| AAAAGATGAGATCATTGGGA+GGG | - | tig0023792:4400-4419 | Msa1411480:CDS | 35.0% | |
| TCATTCTAGATGGTTCAACT+TGG | - | tig0023792:4472-4491 | Msa1411480:CDS | 35.0% | |
| !! | AGTTCTAAAACACCAATTGG+TGG | + | tig0023792:4653-4672 | None:intergenic | 35.0% |
| !!! | CCAATTGGTGTTTTAGAACT+CGG | - | tig0023792:4653-4672 | Msa1411480:CDS | 35.0% |
| !!! | TACCATCCCTTGTTTTCATT+GGG | + | tig0023792:4703-4722 | None:intergenic | 35.0% |
| TAGCAAAATACGGTCACAAA+TGG | - | tig0023792:4747-4766 | Msa1411480:CDS | 35.0% | |
| AGCAAAATACGGTCACAAAT+GGG | - | tig0023792:4748-4767 | Msa1411480:CDS | 35.0% | |
| ! | GTGTATTGCTCGTTGTATTT+TGG | + | tig0023792:4806-4825 | None:intergenic | 35.0% |
| AATACAACGAGCAATACACT+TGG | - | tig0023792:4807-4826 | Msa1411480:CDS | 35.0% | |
| ATACAACGAGCAATACACTT+GGG | - | tig0023792:4808-4827 | Msa1411480:CDS | 35.0% | |
| TTTGACAATTCCCAAATCAG+TGG | - | tig0023792:4869-4888 | Msa1411480:CDS | 35.0% | |
| CAAAGACTTGAAAATTGGGA+AGG | - | tig0023792:4907-4926 | Msa1411480:CDS | 35.0% | |
| ! | CCATTTTCTTAACACCAGTT+GGG | + | tig0023792:5003-5022 | None:intergenic | 35.0% |
| ! | CCAACTGGTGTTAAGAAAAT+GGG | - | tig0023792:5001-5020 | Msa1411480:CDS | 35.0% |
| TTTGCAGTTGGAAAATGGTT+AGG | - | tig0023792:5313-5332 | Msa1411480:CDS | 35.0% | |
| TGAACAAGGACTGTTGTAAT+AGG | + | tig0023792:5361-5380 | None:intergenic | 35.0% | |
| TGAGAAACAACACATGAACA+AGG | + | tig0023792:5375-5394 | None:intergenic | 35.0% | |
| !! | TCATGTGTTGTTTCTCATGT+TGG | - | tig0023792:5378-5397 | Msa1411480:CDS | 35.0% |
| ACCTATTCTTGATAGGTGTA+TGG | - | tig0023792:5440-5459 | Msa1411480:CDS | 35.0% | |
| TCCATACACCTATCAAGAAT+AGG | + | tig0023792:5444-5463 | None:intergenic | 35.0% | |
| AATTCCTCATCCATTTCATC+GGG | + | tig0023792:5700-5719 | None:intergenic | 35.0% | |
| ATGAATAAAGAAGTAGCACG+CGG | + | tig0023792:5868-5887 | None:intergenic | 35.0% | |
| ! | TTTCTGTTTGTTAGCTGCTT+TGG | - | tig0023792:5891-5910 | Msa1411480:CDS | 35.0% |
| ! | TGTTACTCCTTTTCAAATGG+TGG | - | tig0023792:5921-5940 | Msa1411480:CDS | 35.0% |
| TAGCAGGTTTCTATTTCATG+AGG | - | tig0023792:5950-5969 | Msa1411480:CDS | 35.0% | |
| AACATACTATCAGTTCTTGC+AGG | + | tig0023792:6033-6052 | None:intergenic | 35.0% | |
| CTTAAAGTTAGGGGTAGATG+TGG | - | tig0023792:2876-2895 | Msa1411480:CDS | 40.0% | |
| CACAATCTACTACCCAAAGA+TGG | - | tig0023792:2907-2926 | Msa1411480:CDS | 40.0% | |
| TAGAAGCTCTCATTCCAAAC+AGG | + | tig0023792:3015-3034 | None:intergenic | 40.0% | |
| GTGAGATAGTGAAGATTGGA+AGG | + | tig0023792:3054-3073 | None:intergenic | 40.0% | |
| ATGGACTCAACAGAAGGATT+TGG | + | tig0023792:3288-3307 | None:intergenic | 40.0% | |
| AGCATGATTATTTGTCGGCA+TGG | + | tig0023792:3307-3326 | None:intergenic | 40.0% | |
| GAATGGTTTATCTCGTGACA+AGG | - | tig0023792:3356-3375 | Msa1411480:intron | 40.0% | |
| GTGATGAAATGTGTGTCTTG+AGG | + | tig0023792:3388-3407 | None:intergenic | 40.0% | |
| TCCCTAACACAAACCATCAA+CGG | - | tig0023792:3409-3428 | Msa1411480:intron | 40.0% | |
| ! | TGTACTAGCTTCATAGGTTG+TGG | + | tig0023792:3519-3538 | None:intergenic | 40.0% |
| ! | TGCATGTGTACTAGCTTCAT+AGG | + | tig0023792:3525-3544 | None:intergenic | 40.0% |
| CTCAGTTACATCACTACAAC+CGG | - | tig0023792:3545-3564 | Msa1411480:CDS | 40.0% | |
| TTTGTATGTCAGGGTCGTTA+AGG | - | tig0023792:3686-3705 | Msa1411480:CDS | 40.0% | |
| CTTCCTTCTATGGATCTTAC+CGG | - | tig0023792:3717-3736 | Msa1411480:CDS | 40.0% | |
| TTCCTTCTATGGATCTTACC+GGG | - | tig0023792:3718-3737 | Msa1411480:CDS | 40.0% | |
| AACAAATGGATCAAGACTCC+CGG | + | tig0023792:3739-3758 | None:intergenic | 40.0% | |
| ! | GAGTCTTGATCCATTTGTTG+AGG | - | tig0023792:3740-3759 | Msa1411480:CDS | 40.0% |
| CCAATTCTCACCTCAACAAA+TGG | + | tig0023792:3753-3772 | None:intergenic | 40.0% | |
| ! | CCATTTGTTGAGGTGAGAAT+TGG | - | tig0023792:3750-3769 | Msa1411480:CDS | 40.0% |
| GTGAGAATTGGCAATTACAG+AGG | - | tig0023792:3762-3781 | Msa1411480:CDS | 40.0% | |
| ATAAGAATCAGAATCCGGAG+TGG | - | tig0023792:3802-3821 | Msa1411480:CDS | 40.0% | |
| CTATCTGGTGGAACTCTTAA+AGG | + | tig0023792:3951-3970 | None:intergenic | 40.0% | |
| TATCGCCTTGACGATAAGAA+AGG | - | tig0023792:3990-4009 | Msa1411480:CDS | 40.0% | |
| ATCGCCTTGACGATAAGAAA+GGG | - | tig0023792:3991-4010 | Msa1411480:CDS | 40.0% | |
| TTGATGCTAGCTGTTTGGAT+TGG | - | tig0023792:4032-4051 | Msa1411480:CDS | 40.0% | |
| TACGACAGTGATACGTTCAA+AGG | - | tig0023792:4130-4149 | Msa1411480:CDS | 40.0% | |
| AGCACAAGACTTGATTCCAA+CGG | - | tig0023792:4199-4218 | Msa1411480:CDS | 40.0% | |
| CTAGAACTCTAAACCCACAA+TGG | - | tig0023792:4297-4316 | Msa1411480:CDS | 40.0% | |
| ! | CCAATGATCTCATCTTTTCC+CGG | + | tig0023792:4398-4417 | None:intergenic | 40.0% |
| CGGGAAAAGATGAGATCATT+GGG | - | tig0023792:4396-4415 | Msa1411480:CDS | 40.0% | |
| GAAAAGATGAGATCATTGGG+AGG | - | tig0023792:4399-4418 | Msa1411480:CDS | 40.0% | |
| CTTCAGATGATCAACATCCA+CGG | + | tig0023792:4510-4529 | None:intergenic | 40.0% | |
| TTGCAAGCAGAATTCAGCTA+CGG | - | tig0023792:4540-4559 | Msa1411480:CDS | 40.0% | |
| ! | TCCATAACTGTTTTGCAGTG+GGG | + | tig0023792:4628-4647 | None:intergenic | 40.0% |
| ! | CTCCATAACTGTTTTGCAGT+GGG | + | tig0023792:4629-4648 | None:intergenic | 40.0% |
| !! | CCGAGTTCTAAAACACCAAT+TGG | + | tig0023792:4656-4675 | None:intergenic | 40.0% |
| ACTCCACCCAATGAAAACAA+GGG | - | tig0023792:4694-4713 | Msa1411480:CDS | 40.0% | |
| !!! | CTACCATCCCTTGTTTTCAT+TGG | + | tig0023792:4704-4723 | None:intergenic | 40.0% |
| ATGAAAACAAGGGATGGTAG+AGG | - | tig0023792:4704-4723 | Msa1411480:CDS | 40.0% | |
| TTCCCAAATCAGTGGTGAAA+AGG | - | tig0023792:4877-4896 | Msa1411480:CDS | 40.0% | |
| TCCCAAATCAGTGGTGAAAA+GGG | - | tig0023792:4878-4897 | Msa1411480:CDS | 40.0% | |
| !!! | ACCCTTTTCACCACTGATTT+GGG | + | tig0023792:4882-4901 | None:intergenic | 40.0% |
| !! | TATCGACTCTTGAAACAGGA+CGG | - | tig0023792:4942-4961 | Msa1411480:CDS | 40.0% |
| ! | CCCAACTGGTGTTAAGAAAA+TGG | - | tig0023792:5000-5019 | Msa1411480:CDS | 40.0% |
| ! | CCCATTTTCTTAACACCAGT+TGG | + | tig0023792:5004-5023 | None:intergenic | 40.0% |
| GAAAATGGGAGAACTTCACT+TGG | - | tig0023792:5015-5034 | Msa1411480:CDS | 40.0% | |
| !!! | GGAGAAGTGGTTTTGAGTAT+AGG | + | tig0023792:5081-5100 | None:intergenic | 40.0% |
| !! | TAATGCATTTTCGGGAGAAG+TGG | + | tig0023792:5094-5113 | None:intergenic | 40.0% |
| TCCCGAAAATGCATTACGTT+AGG | - | tig0023792:5098-5117 | Msa1411480:CDS | 40.0% | |
| ! | GCCTAACGTAATGCATTTTC+GGG | + | tig0023792:5102-5121 | None:intergenic | 40.0% |
| ! | GGCCTAACGTAATGCATTTT+CGG | + | tig0023792:5103-5122 | None:intergenic | 40.0% |
| TCACCAAGCAGTAAACATAG+TGG | - | tig0023792:5153-5172 | Msa1411480:CDS | 40.0% | |
| !! | CAGATGTTGACTCACATCTA+TGG | - | tig0023792:5233-5252 | Msa1411480:CDS | 40.0% |
| GAAAGAAGTTTGCCTTGCTA+CGG | + | tig0023792:5267-5286 | None:intergenic | 40.0% | |
| CACCAGAAAAAACTGTCATG+AGG | + | tig0023792:5291-5310 | None:intergenic | 40.0% | |
| !! | TTTTCTGGTGTGTTTGCAGT+TGG | - | tig0023792:5301-5320 | Msa1411480:CDS | 40.0% |
| GTGTGTTTGCAGTTGGAAAA+TGG | - | tig0023792:5308-5327 | Msa1411480:CDS | 40.0% | |
| GGTTAGGTGATATTTGCATG+TGG | - | tig0023792:5329-5348 | Msa1411480:CDS | 40.0% | |
| AGTGTAGGCAAAATCAACTC+CGG | + | tig0023792:5412-5431 | None:intergenic | 40.0% | |
| TGATAGGTGTATGGAACTTC+AGG | - | tig0023792:5449-5468 | Msa1411480:CDS | 40.0% | |
| TTCTTGTGTTCATGTGTGGA+GGG | + | tig0023792:5654-5673 | None:intergenic | 40.0% | |
| ATTCTTGTGTTCATGTGTGG+AGG | + | tig0023792:5655-5674 | None:intergenic | 40.0% | |
| GAGATTCTTGTGTTCATGTG+TGG | + | tig0023792:5658-5677 | None:intergenic | 40.0% | |
| CATGAACACAAGAATCTCAC+AGG | - | tig0023792:5660-5679 | Msa1411480:CDS | 40.0% | |
| ATTCCTCATCCATTTCATCG+GGG | + | tig0023792:5699-5718 | None:intergenic | 40.0% | |
| ! | AGGTCAGGATTTTTGCTTGT+TGG | + | tig0023792:5733-5752 | None:intergenic | 40.0% |
| ATCCTGACCTTGTAAGAATG+CGG | - | tig0023792:5743-5762 | Msa1411480:CDS | 40.0% | |
| GATCATACCGCATTCTTACA+AGG | + | tig0023792:5753-5772 | None:intergenic | 40.0% | |
| GGTAGAATACAAACGGTTGT+AGG | - | tig0023792:5790-5809 | Msa1411480:CDS | 40.0% | |
| ACAAACGGTTGTAGGTGATT+TGG | - | tig0023792:5798-5817 | Msa1411480:CDS | 40.0% | |
| AAACCAGCCACCATTTGAAA+AGG | + | tig0023792:5931-5950 | None:intergenic | 40.0% | |
| AAGTTAGGGGTAGATGTGGT+TGG | - | tig0023792:2880-2899 | Msa1411480:CDS | 45.0% | |
| CTACTACCCAAAGATGGAGA+AGG | - | tig0023792:2913-2932 | Msa1411480:CDS | 45.0% | |
| GAAGAGCCTTCTCCATCTTT+GGG | + | tig0023792:2922-2941 | None:intergenic | 45.0% | |
| AGAAGAGCCTTCTCCATCTT+TGG | + | tig0023792:2923-2942 | None:intergenic | 45.0% | |
| !! | TAGTAGCTTTGGAATGGCAG+TGG | + | tig0023792:3092-3111 | None:intergenic | 45.0% |
| !! | GGACAAAAGAAGTACCTGTG+AGG | + | tig0023792:3143-3162 | None:intergenic | 45.0% |
| AGACAACTGCATCAGCTTGA+GGG | + | tig0023792:3164-3183 | None:intergenic | 45.0% | |
| AAGACAACTGCATCAGCTTG+AGG | + | tig0023792:3165-3184 | None:intergenic | 45.0% | |
| AGTTGTCTTGCACTATCCGT+TGG | - | tig0023792:3176-3195 | Msa1411480:CDS | 45.0% | |
| ! | AAAATCCCGCGCTTTTCCAA+CGG | + | tig0023792:3195-3214 | None:intergenic | 45.0% |
| CCATTCATCATTGAACCCGT+AGG | + | tig0023792:3342-3361 | None:intergenic | 45.0% | |
| CCTACGGGTTCAATGATGAA+TGG | - | tig0023792:3339-3358 | Msa1411480:intron | 45.0% | |
| !! | GTTGATGGTTTGTGTTAGGG+AGG | + | tig0023792:3410-3429 | None:intergenic | 45.0% |
| !! | GCCGTTGATGGTTTGTGTTA+GGG | + | tig0023792:3413-3432 | None:intergenic | 45.0% |
| !! | TGCCGTTGATGGTTTGTGTT+AGG | + | tig0023792:3414-3433 | None:intergenic | 45.0% |
| GTGAGTATCTGCATATCCAG+TGG | + | tig0023792:3454-3473 | None:intergenic | 45.0% | |
| AGTTCCACCAGATAGTCCTT+TGG | - | tig0023792:3956-3975 | Msa1411480:CDS | 45.0% | |
| ATCGTCAAGGCGATACCATT+CGG | + | tig0023792:3985-4004 | None:intergenic | 45.0% | |
| TCGCCTTGACGATAAGAAAG+GGG | - | tig0023792:3992-4011 | Msa1411480:CDS | 45.0% | |
| TCTCCCCTTTCTTATCGTCA+AGG | + | tig0023792:3998-4017 | None:intergenic | 45.0% | |
| !! | GTGAGTTGATGCTAGCTGTT+TGG | - | tig0023792:4027-4046 | Msa1411480:CDS | 45.0% |
| AACGGAGAAAAACCGTTTCC+CGG | - | tig0023792:4217-4236 | Msa1411480:CDS | 45.0% | |
| TGACATATGCATCCGGGAAA+CGG | + | tig0023792:4232-4251 | None:intergenic | 45.0% | |
| TTTCCCGGATGCATATGTCA+AGG | - | tig0023792:4232-4251 | Msa1411480:CDS | 45.0% | |
| TGGACCTTGACATATGCATC+CGG | + | tig0023792:4239-4258 | None:intergenic | 45.0% | |
| GCATATGTCAAGGTCCAGAT+AGG | - | tig0023792:4242-4261 | Msa1411480:CDS | 45.0% | |
| TCAGCACTTGGTTTCCTATC+TGG | + | tig0023792:4259-4278 | None:intergenic | 45.0% | |
| ! | TGTGGGTTTAGAGTTCTAGC+AGG | + | tig0023792:4296-4315 | None:intergenic | 45.0% |
| CTTTCGGTTGAAGATCGAGT+TGG | - | tig0023792:4371-4390 | Msa1411480:CDS | 45.0% | |
| CCGGGAAAAGATGAGATCAT+TGG | - | tig0023792:4395-4414 | Msa1411480:CDS | 45.0% | |
| AATTCAGCTACGGCTATGTC+TGG | - | tig0023792:4550-4569 | Msa1411480:CDS | 45.0% | |
| ! | CCTCCATAACTGTTTTGCAG+TGG | + | tig0023792:4630-4649 | None:intergenic | 45.0% |
| CCACTGCAAAACAGTTATGG+AGG | - | tig0023792:4627-4646 | Msa1411480:CDS | 45.0% | |
| GACTCCACCCAATGAAAACA+AGG | - | tig0023792:4693-4712 | Msa1411480:CDS | 45.0% | |
| !!! | CATCCCTTGTTTTCATTGGG+TGG | + | tig0023792:4700-4719 | None:intergenic | 45.0% |
| CACCCAATGAAAACAAGGGA+TGG | - | tig0023792:4698-4717 | Msa1411480:CDS | 45.0% | |
| GTCACAAATGGGTCAGAACA+AGG | - | tig0023792:4759-4778 | Msa1411480:CDS | 45.0% | |
| TGTCAAAGACACCTACTGTG+AGG | + | tig0023792:4856-4875 | None:intergenic | 45.0% | |
| !! | GACCCTTTTCACCACTGATT+TGG | + | tig0023792:4883-4902 | None:intergenic | 45.0% |
| !! | CGCATATCGACTCTTGAAAC+AGG | - | tig0023792:4938-4957 | Msa1411480:CDS | 45.0% |
| GTTGGGTGAAGAACAAGCAA+TGG | + | tig0023792:4986-5005 | None:intergenic | 45.0% | |
| TTGCTTGTTCTTCACCCAAC+TGG | - | tig0023792:4986-5005 | Msa1411480:CDS | 45.0% | |
| CTGCCACTATGTTTACTGCT+TGG | + | tig0023792:5159-5178 | None:intergenic | 45.0% | |
| TCCACGACTTCTTTACGAAG+CGG | + | tig0023792:5205-5224 | None:intergenic | 45.0% | |
| !!! | CGCCTCATGACAGTTTTTTC+TGG | - | tig0023792:5286-5305 | Msa1411480:CDS | 45.0% |
| !! | TCTCATGTTGGTTTGCTTCC+CGG | - | tig0023792:5390-5409 | Msa1411480:CDS | 45.0% |
| GTGTAGGCAAAATCAACTCC+GGG | + | tig0023792:5411-5430 | None:intergenic | 45.0% | |
| !! | TTCATGTGTGGAGGGTATCT+TGG | + | tig0023792:5646-5665 | None:intergenic | 45.0% |
| TGTAGTACACCCCGATGAAA+TGG | - | tig0023792:5687-5706 | Msa1411480:CDS | 45.0% | |
| TACCGCATTCTTACAAGGTC+AGG | + | tig0023792:5748-5767 | None:intergenic | 45.0% | |
| GAATGCGGTATGATCGTTTG+AGG | - | tig0023792:5758-5777 | Msa1411480:CDS | 45.0% | |
| CGTGGCTGGTAGAATACAAA+CGG | - | tig0023792:5783-5802 | Msa1411480:CDS | 45.0% | |
| ! | ACTCCTTTTCAAATGGTGGC+TGG | - | tig0023792:5925-5944 | Msa1411480:CDS | 45.0% |
| GGAAGCCTGTTTCGAAATCT+GGG | + | tig0023792:5979-5998 | None:intergenic | 45.0% | |
| ! | AAGAAGTTGATCGGTGCAGA+CGG | + | tig0023792:6000-6019 | None:intergenic | 45.0% |
| ! | AGTCGACGGAAGAAGTTGAT+CGG | + | tig0023792:6009-6028 | None:intergenic | 45.0% |
| ! | CTTGGCAAAGTTAGCCTCAC+AGG | - | tig0023792:3126-3145 | Msa1411480:CDS | 50.0% |
| CACTATCCGTTGGAAAAGCG+CGG | - | tig0023792:3186-3205 | Msa1411480:CDS | 50.0% | |
| ! | ACTATCCGTTGGAAAAGCGC+GGG | - | tig0023792:3187-3206 | Msa1411480:CDS | 50.0% |
| ! | GGGATTTTCTCTCGCGTAAG+AGG | - | tig0023792:3207-3226 | Msa1411480:CDS | 50.0% |
| TGCTGAAGTCCTTGGACCTA+CGG | - | tig0023792:3323-3342 | Msa1411480:intron | 50.0% | |
| TCATTGAACCCGTAGGTCCA+AGG | + | tig0023792:3335-3354 | None:intergenic | 50.0% | |
| GTTGATGCTGATGCCGTTGA+TGG | + | tig0023792:3425-3444 | None:intergenic | 50.0% | |
| CAGCATCAACAACACTCCAC+TGG | - | tig0023792:3435-3454 | Msa1411480:intron | 50.0% | |
| GAAACAAGTCCGTTTCTCGG+TGG | - | tig0023792:3585-3604 | Msa1411480:CDS | 50.0% | |
| CTCCCGGTAAGATCCATAGA+AGG | + | tig0023792:3723-3742 | None:intergenic | 50.0% | |
| GCAAAAACCTGATGCCACTC+CGG | + | tig0023792:3819-3838 | None:intergenic | 50.0% | |
| ATAGTCCTTTGGCACCCGAA+TGG | - | tig0023792:3967-3986 | Msa1411480:CDS | 50.0% | |
| TCGTCAAGGCGATACCATTC+GGG | + | tig0023792:3984-4003 | None:intergenic | 50.0% | |
| TTCAGATGCAGCTTCACCTG+TGG | - | tig0023792:4091-4110 | Msa1411480:CDS | 50.0% | |
| CGTATCACTGTCGTAGTAGC+AGG | + | tig0023792:4125-4144 | None:intergenic | 50.0% | |
| CAAAGGTCTATCATGCTCCG+AGG | - | tig0023792:4147-4166 | Msa1411480:CDS | 50.0% | |
| TCTATCATGCTCCGAGGTTG+TGG | - | tig0023792:4153-4172 | Msa1411480:CDS | 50.0% | |
| ACACGAACGTACCACAACCT+CGG | + | tig0023792:4167-4186 | None:intergenic | 50.0% | |
| ! | GGGAAACGGTTTTTCTCCGT+TGG | + | tig0023792:4218-4237 | None:intergenic | 50.0% |
| GGACCTTGACATATGCATCC+GGG | + | tig0023792:4238-4257 | None:intergenic | 50.0% | |
| !! | GGTTGAAGATCGAGTTGGTC+CGG | - | tig0023792:4376-4395 | Msa1411480:CDS | 50.0% |
| !! | GTTGAAGATCGAGTTGGTCC+GGG | - | tig0023792:4377-4396 | Msa1411480:CDS | 50.0% |
| TGATCAACATCCACGGCAAC+AGG | + | tig0023792:4503-4522 | None:intergenic | 50.0% | |
| GCCCCACTGCAAAACAGTTA+TGG | - | tig0023792:4624-4643 | Msa1411480:CDS | 50.0% | |
| CAGTTATGGAGGCCACCAAT+TGG | - | tig0023792:4638-4657 | Msa1411480:CDS | 50.0% | |
| !! | CTCGGAGTGCTGAATGCAAT+AGG | - | tig0023792:4671-4690 | Msa1411480:CDS | 50.0% |
| CAACGAGCAATACACTTGGG+AGG | - | tig0023792:4811-4830 | Msa1411480:CDS | 50.0% | |
| ! | TCGAGTTGCATGACTGCGAA+TGG | + | tig0023792:5124-5143 | None:intergenic | 50.0% |
| CAGTAAACATAGTGGCAGCG+CGG | - | tig0023792:5161-5180 | Msa1411480:CDS | 50.0% | |
| ACGACTTCTTTACGAAGCGG+TGG | + | tig0023792:5202-5221 | None:intergenic | 50.0% | |
| ACCGCTTCGTAAAGAAGTCG+TGG | - | tig0023792:5201-5220 | Msa1411480:CDS | 50.0% | |
| !! | TGTGTGGAGGGTATCTTGGT+CGG | + | tig0023792:5642-5661 | None:intergenic | 50.0% |
| ACACCCCGATGAAATGGATG+AGG | - | tig0023792:5693-5712 | Msa1411480:CDS | 50.0% | |
| GTATGATCGTTTGAGGAGCG+TGG | - | tig0023792:5765-5784 | Msa1411480:CDS | 50.0% | |
| ! | TGTAGGTGATTTGGCTAGCC+AGG | - | tig0023792:5807-5826 | Msa1411480:CDS | 50.0% |
| ! | GTAGGTGATTTGGCTAGCCA+GGG | - | tig0023792:5808-5827 | Msa1411480:CDS | 50.0% |
| GGATTCATGCACTGTTGAGC+TGG | - | tig0023792:5836-5855 | Msa1411480:CDS | 50.0% | |
| !! | CAAATGGTGGCTGGTTTAGC+AGG | - | tig0023792:5934-5953 | Msa1411480:CDS | 50.0% |
| GGCATCCCAGATTTCGAAAC+AGG | - | tig0023792:5971-5990 | Msa1411480:CDS | 50.0% | |
| CGGAAGCCTGTTTCGAAATC+TGG | + | tig0023792:5980-5999 | None:intergenic | 50.0% | |
| CAGTTCTTGCAGGAAGTCGA+CGG | + | tig0023792:6023-6042 | None:intergenic | 50.0% | |
| TCTCGCGTAAGAGGTGAGCT+TGG | - | tig0023792:3216-3235 | Msa1411480:CDS | 55.0% | |
| GTCGGCATGGACTCAACAGA+AGG | + | tig0023792:3294-3313 | None:intergenic | 55.0% | |
| GCTGAAGTCCTTGGACCTAC+GGG | - | tig0023792:3324-3343 | Msa1411480:intron | 55.0% | |
| ACAAGTCCGTTTCTCGGTGG+AGG | - | tig0023792:3588-3607 | Msa1411480:CDS | 55.0% | |
| TCCGTTTCTCGGTGGAGGAA+GGG | - | tig0023792:3593-3612 | Msa1411480:CDS | 55.0% | |
| ACCCTTCCTCCACCGAGAAA+CGG | + | tig0023792:3597-3616 | None:intergenic | 55.0% | |
| GGCTCGTGAGCTTCCTTCTA+TGG | - | tig0023792:3707-3726 | Msa1411480:CDS | 55.0% | |
| TCAGAATCCGGAGTGGCATC+AGG | - | tig0023792:3809-3828 | Msa1411480:CDS | 55.0% | |
| GGTGCCAAAGGACTATCTGG+TGG | + | tig0023792:3963-3982 | None:intergenic | 55.0% | |
| TCGGGTGCCAAAGGACTATC+TGG | + | tig0023792:3966-3985 | None:intergenic | 55.0% | |
| CGATACCATTCGGGTGCCAA+AGG | + | tig0023792:3975-3994 | None:intergenic | 55.0% | |
| TACCATACCGCTGAACGCTG+TGG | - | tig0023792:4424-4443 | Msa1411480:CDS | 55.0% | |
| CTTGGAAAAGCCTGTTGCCG+TGG | - | tig0023792:4490-4509 | Msa1411480:CDS | 55.0% | |
| CAGCTACGGCTATGTCTGGA+TGG | - | tig0023792:4554-4573 | Msa1411480:CDS | 55.0% | |
| CTACGGCTATGTCTGGATGG+AGG | - | tig0023792:4557-4576 | Msa1411480:CDS | 55.0% | |
| GACACCTACTGTGAGGACTG+TGG | + | tig0023792:4849-4868 | None:intergenic | 55.0% | |
| ! | ATTTGGCTAGCCAGGGTGAG+AGG | - | tig0023792:5815-5834 | Msa1411480:CDS | 55.0% |
| GTGCATGAATCCTCTCACCC+TGG | + | tig0023792:5828-5847 | None:intergenic | 55.0% | |
| GTCCGTTTCTCGGTGGAGGA+AGG | - | tig0023792:3592-3611 | Msa1411480:CDS | 60.0% | |
| CTCGGTGGAGGAAGGGTTGT+TGG | - | tig0023792:3600-3619 | Msa1411480:CDS | 60.0% | |
| GGTGGAGGAAGGGTTGTTGG+CGG | - | tig0023792:3603-3622 | Msa1411480:CDS | 60.0% | |
| CTCCACAGCGTTCAGCGGTA+TGG | + | tig0023792:4429-4448 | None:intergenic | 60.0% | |
| TACCGCTGAACGCTGTGGAG+AGG | - | tig0023792:4429-4448 | Msa1411480:CDS | 60.0% | |
| CCTACTGTGAGGACTGTGGC+AGG | + | tig0023792:4845-4864 | None:intergenic | 60.0% | |
| CCTGCCACAGTCCTCACAGT+AGG | - | tig0023792:4842-4861 | Msa1411480:CDS | 60.0% | |
| AACATAGTGGCAGCGCGGCT+CGG | - | tig0023792:5166-5185 | Msa1411480:CDS | 60.0% | |
| ATGGAGCATGCGCCGTAGCA+AGG | - | tig0023792:5252-5271 | Msa1411480:CDS | 60.0% | |
| ! | GATCGTTTGAGGAGCGTGGC+TGG | - | tig0023792:5769-5788 | Msa1411480:CDS | 60.0% |
| GTAGCAGGCGTGCTGTCCAC+AGG | + | tig0023792:4110-4129 | None:intergenic | 65.0% | |
| CGCCTCTCCACAGCGTTCAG+CGG | + | tig0023792:4434-4453 | None:intergenic | 65.0% | |
| ! | GAACGCTGTGGAGAGGCGTG+CGG | - | tig0023792:4436-4455 | Msa1411480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023792 | gene | 2868 | 6056 | 2868 | ID=Msa1411480;Name=Msa1411480 |
| tig0023792 | mRNA | 2868 | 6056 | 2868 | ID=Msa1411480-mRNA-1;Parent=Msa1411480;Name=Msa1411480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|1007 |
| tig0023792 | exon | 3454 | 6056 | 3454 | ID=Msa1411480-mRNA-1:exon:20163;Parent=Msa1411480-mRNA-1 |
| tig0023792 | exon | 2868 | 3288 | 2868 | ID=Msa1411480-mRNA-1:exon:20162;Parent=Msa1411480-mRNA-1 |
| tig0023792 | CDS | 3454 | 6056 | 3454 | ID=Msa1411480-mRNA-1:cds;Parent=Msa1411480-mRNA-1 |
| tig0023792 | CDS | 2868 | 3288 | 2868 | ID=Msa1411480-mRNA-1:cds;Parent=Msa1411480-mRNA-1 |
| Gene Sequence |
| Protein sequence |