Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359740 | XP_013466253.1 | 67.473 | 372 | 110 | 4 | 3 | 372 | 1 | 363 | 1.30e-166 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359740 | sp|Q3EBZ2|SKI23_ARATH | 34.005 | 397 | 221 | 14 | 8 | 372 | 3 | 390 | 1.80e-47 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359740 | A0A072VE49 | 67.473 | 372 | 110 | 4 | 3 | 372 | 1 | 363 | 6.22e-167 | 480 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005840 | Msa1359740 | 0.944904 | 8.255800e-104 | -8.615850e-47 |
| Msa0701700 | Msa1359740 | 0.805232 | 1.474386e-49 | -8.615850e-47 |
| Msa1126450 | Msa1359740 | 0.812820 | 3.498331e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359740 | MtrunA17_Chr1g0157711 | 67.473 | 372 | 110 | 4 | 3 | 372 | 1 | 363 | 1.20e-170 | 480 |
| Msa1359740 | MtrunA17_Chr1g0146401 | 63.073 | 371 | 118 | 7 | 8 | 368 | 22 | 383 | 8.76e-157 | 446 |
| Msa1359740 | MtrunA17_Chr2g0303111 | 53.927 | 382 | 149 | 9 | 3 | 372 | 1 | 367 | 3.08e-131 | 380 |
| Msa1359740 | MtrunA17_Chr6g0457501 | 53.886 | 386 | 151 | 10 | 7 | 373 | 4 | 381 | 5.76e-130 | 379 |
| Msa1359740 | MtrunA17_Chr6g0457531 | 56.992 | 379 | 137 | 11 | 5 | 372 | 2 | 365 | 1.42e-129 | 376 |
| Msa1359740 | MtrunA17_Chr3g0088751 | 54.068 | 381 | 153 | 9 | 5 | 372 | 2 | 373 | 2.66e-127 | 371 |
| Msa1359740 | MtrunA17_Chr3g0088841 | 54.737 | 380 | 144 | 10 | 7 | 372 | 6 | 371 | 1.34e-123 | 361 |
| Msa1359740 | MtrunA17_Chr6g0457541 | 51.047 | 382 | 154 | 12 | 7 | 372 | 4 | 368 | 7.69e-115 | 338 |
| Msa1359740 | MtrunA17_Chr6g0460451 | 50.649 | 385 | 160 | 10 | 7 | 373 | 4 | 376 | 5.43e-111 | 329 |
| Msa1359740 | MtrunA17_Chr6g0460421 | 50.390 | 385 | 161 | 10 | 7 | 373 | 4 | 376 | 1.14e-110 | 328 |
| Msa1359740 | MtrunA17_Chr3g0088721 | 46.310 | 393 | 172 | 12 | 2 | 372 | 3 | 378 | 5.63e-102 | 306 |
| Msa1359740 | MtrunA17_Chr3g0089001 | 49.344 | 381 | 151 | 15 | 5 | 372 | 32 | 383 | 7.18e-101 | 303 |
| Msa1359740 | MtrunA17_Chr3g0088951 | 48.158 | 380 | 160 | 10 | 5 | 372 | 2 | 356 | 7.94e-101 | 302 |
| Msa1359740 | MtrunA17_Chr3g0088931 | 49.570 | 349 | 135 | 11 | 6 | 335 | 3 | 329 | 1.94e-97 | 295 |
| Msa1359740 | MtrunA17_Chr3g0088551 | 46.883 | 401 | 173 | 16 | 5 | 372 | 2 | 395 | 6.00e-97 | 294 |
| Msa1359740 | MtrunA17_Chr3g0127321 | 44.686 | 414 | 171 | 12 | 2 | 372 | 28 | 426 | 5.47e-96 | 293 |
| Msa1359740 | MtrunA17_Chr1g0170781 | 43.032 | 409 | 172 | 14 | 1 | 372 | 12 | 396 | 1.46e-91 | 280 |
| Msa1359740 | MtrunA17_Chr1g0151721 | 45.263 | 380 | 151 | 11 | 2 | 372 | 16 | 347 | 2.46e-91 | 278 |
| Msa1359740 | MtrunA17_Chr3g0088921 | 44.819 | 415 | 162 | 17 | 3 | 372 | 1 | 393 | 1.04e-90 | 278 |
| Msa1359740 | MtrunA17_Chr3g0127311 | 43.216 | 398 | 184 | 12 | 3 | 372 | 2 | 385 | 2.94e-89 | 275 |
| Msa1359740 | MtrunA17_Chr3g0088601 | 43.672 | 403 | 179 | 12 | 2 | 372 | 11 | 397 | 5.24e-89 | 274 |
| Msa1359740 | MtrunA17_Chr3g0088631 | 45.500 | 400 | 170 | 15 | 5 | 372 | 2 | 385 | 2.53e-88 | 271 |
| Msa1359740 | MtrunA17_Chr3g0088621 | 41.667 | 396 | 188 | 15 | 7 | 375 | 15 | 394 | 8.53e-87 | 268 |
| Msa1359740 | MtrunA17_Chr3g0088671 | 43.902 | 369 | 178 | 10 | 5 | 361 | 2 | 353 | 1.98e-84 | 260 |
| Msa1359740 | MtrunA17_Chr3g0088991 | 44.125 | 383 | 157 | 15 | 3 | 372 | 1 | 339 | 1.88e-83 | 258 |
| Msa1359740 | MtrunA17_Chr3g0088641 | 44.444 | 387 | 174 | 15 | 5 | 377 | 1 | 360 | 3.79e-83 | 257 |
| Msa1359740 | MtrunA17_Chr3g0089051 | 44.527 | 402 | 169 | 16 | 7 | 376 | 57 | 436 | 9.76e-83 | 259 |
| Msa1359740 | MtrunA17_Chr3g0088541 | 42.893 | 394 | 176 | 13 | 5 | 376 | 1 | 367 | 1.08e-82 | 256 |
| Msa1359740 | MtrunA17_Chr3g0088531 | 44.051 | 395 | 174 | 16 | 7 | 375 | 2 | 375 | 1.72e-82 | 256 |
| Msa1359740 | MtrunA17_Chr3g0089041 | 41.026 | 390 | 200 | 14 | 5 | 377 | 1 | 377 | 2.29e-77 | 243 |
| Msa1359740 | MtrunA17_Chr3g0088831 | 39.568 | 417 | 190 | 12 | 7 | 372 | 15 | 420 | 1.11e-76 | 243 |
| Msa1359740 | MtrunA17_Chr3g0088741 | 42.670 | 382 | 184 | 14 | 5 | 376 | 2 | 358 | 1.73e-76 | 240 |
| Msa1359740 | MtrunA17_Chr1g0146371 | 60.406 | 197 | 45 | 3 | 170 | 365 | 3 | 167 | 4.89e-73 | 224 |
| Msa1359740 | MtrunA17_Chr3g0096401 | 42.063 | 378 | 162 | 15 | 8 | 374 | 30 | 361 | 3.40e-68 | 219 |
| Msa1359740 | MtrunA17_Chr7g0214521 | 40.000 | 390 | 189 | 11 | 4 | 377 | 8 | 368 | 2.14e-67 | 217 |
| Msa1359740 | MtrunA17_Chr3g0088701 | 41.071 | 392 | 142 | 15 | 2 | 372 | 3 | 326 | 4.13e-65 | 210 |
| Msa1359740 | MtrunA17_Chr3g0088661 | 40.561 | 392 | 144 | 15 | 2 | 372 | 3 | 326 | 2.35e-63 | 205 |
| Msa1359740 | MtrunA17_Chr5g0417881 | 53.927 | 191 | 76 | 4 | 179 | 363 | 6 | 190 | 5.20e-60 | 192 |
| Msa1359740 | MtrunA17_Chr3g0088561 | 52.542 | 177 | 75 | 2 | 200 | 372 | 1 | 172 | 2.36e-56 | 182 |
| Msa1359740 | MtrunA17_Chr8g0392121 | 47.486 | 179 | 85 | 4 | 197 | 372 | 1 | 173 | 8.69e-45 | 152 |
| Msa1359740 | MtrunA17_Chr1g0151701 | 46.196 | 184 | 82 | 3 | 200 | 372 | 1 | 178 | 6.12e-43 | 147 |
| Msa1359740 | MtrunA17_Chr3g0092331 | 46.629 | 178 | 82 | 4 | 206 | 372 | 5 | 180 | 2.65e-41 | 144 |
| Msa1359740 | MtrunA17_Chr3g0088581 | 41.395 | 215 | 112 | 8 | 167 | 375 | 2 | 208 | 1.42e-40 | 142 |
| Msa1359740 | MtrunA17_Chr3g0088571 | 56.552 | 145 | 51 | 6 | 5 | 138 | 2 | 145 | 4.62e-38 | 134 |
| Msa1359740 | MtrunA17_Chr6g0457511 | 63.303 | 109 | 37 | 3 | 200 | 308 | 1 | 106 | 4.83e-38 | 132 |
| Msa1359740 | MtrunA17_Chr3g0088711 | 43.842 | 203 | 90 | 6 | 173 | 372 | 1 | 182 | 9.12e-37 | 131 |
| Msa1359740 | MtrunA17_Chr3g0088691 | 42.246 | 187 | 98 | 5 | 5 | 187 | 2 | 182 | 1.34e-35 | 128 |
| Msa1359740 | MtrunA17_Chr3g0088591 | 45.806 | 155 | 66 | 4 | 2 | 138 | 15 | 169 | 3.41e-34 | 124 |
| Msa1359740 | MtrunA17_Chr3g0088681 | 43.716 | 183 | 75 | 6 | 200 | 372 | 1 | 165 | 1.55e-33 | 122 |
| Msa1359740 | MtrunA17_Chr2g0300541 | 31.043 | 393 | 213 | 16 | 3 | 366 | 21 | 384 | 3.89e-33 | 127 |
| Msa1359740 | MtrunA17_Chr8g0371031 | 29.040 | 396 | 229 | 11 | 7 | 373 | 24 | 396 | 6.72e-33 | 127 |
| Msa1359740 | MtrunA17_Chr8g0371101 | 31.234 | 397 | 226 | 14 | 3 | 373 | 1 | 376 | 1.17e-32 | 125 |
| Msa1359740 | MtrunA17_Chr1g0146361 | 72.619 | 84 | 19 | 2 | 292 | 373 | 1 | 82 | 1.68e-32 | 117 |
| Msa1359740 | MtrunA17_Chr1g0146381 | 67.045 | 88 | 29 | 0 | 1 | 88 | 1 | 88 | 3.90e-32 | 116 |
| Msa1359740 | MtrunA17_Chr3g0088651 | 46.763 | 139 | 66 | 4 | 5 | 137 | 2 | 138 | 5.76e-26 | 103 |
| Msa1359740 | MtrunA17_Chr4g0010441 | 56.098 | 82 | 33 | 1 | 294 | 372 | 4 | 85 | 5.21e-23 | 92.4 |
| Msa1359740 | MtrunA17_Chr5g0435201 | 27.859 | 341 | 207 | 11 | 3 | 328 | 1 | 317 | 1.30e-21 | 94.7 |
| Msa1359740 | MtrunA17_Chr6g0457521 | 56.180 | 89 | 33 | 2 | 4 | 87 | 54 | 141 | 1.36e-21 | 90.9 |
| Msa1359740 | MtrunA17_Chr6g0488491 | 28.399 | 331 | 206 | 11 | 7 | 328 | 7 | 315 | 2.08e-21 | 94.4 |
| Msa1359740 | MtrunA17_Chr8g0349911 | 60.938 | 64 | 25 | 0 | 156 | 219 | 85 | 148 | 1.81e-19 | 85.5 |
| Msa1359740 | MtrunA17_Chr8g0378641 | 25.735 | 408 | 215 | 17 | 7 | 369 | 12 | 376 | 8.40e-18 | 84.0 |
| Msa1359740 | MtrunA17_Chr3g0143621 | 26.829 | 410 | 236 | 18 | 5 | 373 | 20 | 406 | 4.78e-17 | 82.0 |
| Msa1359740 | MtrunA17_Chr3g0101901 | 39.310 | 145 | 70 | 6 | 5 | 143 | 23 | 155 | 4.86e-17 | 77.8 |
| Msa1359740 | MtrunA17_Chr8g0351561 | 43.434 | 99 | 49 | 4 | 209 | 307 | 1 | 92 | 6.62e-17 | 77.4 |
| Msa1359740 | MtrunA17_Chr6g0449121 | 53.165 | 79 | 27 | 2 | 246 | 324 | 1 | 69 | 7.31e-17 | 74.3 |
| Msa1359740 | MtrunA17_Chr7g0261121 | 25.876 | 371 | 202 | 13 | 1 | 328 | 6 | 346 | 1.08e-14 | 74.7 |
| Msa1359740 | MtrunA17_Chr6g0457551 | 70.270 | 37 | 11 | 0 | 8 | 44 | 5 | 41 | 2.96e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359740 | AT2G17030.1 | 34.005 | 397 | 221 | 14 | 8 | 372 | 3 | 390 | 1.83e-48 | 169 |
| Msa1359740 | AT2G17036.1 | 31.899 | 395 | 226 | 14 | 8 | 372 | 3 | 384 | 4.31e-44 | 157 |
| Msa1359740 | AT2G17036.2 | 31.899 | 395 | 226 | 14 | 8 | 372 | 2 | 383 | 4.41e-44 | 157 |
| Msa1359740 | AT5G24040.1 | 24.607 | 382 | 254 | 13 | 9 | 372 | 4 | 369 | 1.67e-23 | 100 |
| Msa1359740 | AT5G60060.1 | 27.859 | 341 | 216 | 15 | 2 | 325 | 4 | 331 | 6.11e-17 | 82.0 |
Find 96 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGGAGTGTTACTGTTAA+TGG | 0.260239 | tig0016715:-451878 | None:intergenic |
| TGATCCAAGGAGTACGAATT+AGG | 0.261247 | tig0016715:-451951 | None:intergenic |
| TGGGTGAAGGTGGCAAATTT+AGG | 0.262056 | tig0016715:+452555 | Msa1359740:CDS |
| CAGAACAATTTACGATATTC+AGG | 0.271061 | tig0016715:-452750 | None:intergenic |
| TCAGTTAGTGGCTGAATCTT+TGG | 0.273972 | tig0016715:+452374 | Msa1359740:CDS |
| TGTGTTTAAGCTTAATAAAA+AGG | 0.297935 | tig0016715:+452524 | Msa1359740:CDS |
| AAAATGTTACGGTGGTGATT+TGG | 0.307795 | tig0016715:-451811 | None:intergenic |
| GGGTGAAGGTGGCAAATTTA+GGG | 0.314083 | tig0016715:+452556 | Msa1359740:CDS |
| CAATTTATCTCTCATTCATT+TGG | 0.334290 | tig0016715:+452068 | Msa1359740:CDS |
| TCAAATGCGGGGATGATAAT+TGG | 0.334319 | tig0016715:+452235 | Msa1359740:CDS |
| CTGAATATCGTAAATTGTTC+TGG | 0.359358 | tig0016715:+452751 | Msa1359740:CDS |
| AAATGTTACGGTGGTGATTT+GGG | 0.365695 | tig0016715:-451810 | None:intergenic |
| CCTAAGTAAGCCGACATGTT+AGG | 0.373522 | tig0016715:-452267 | None:intergenic |
| TTTACGATATTCAGGATAAT+CGG | 0.381408 | tig0016715:-452742 | None:intergenic |
| AACTGAATAGTGGAGTTATC+TGG | 0.396368 | tig0016715:-452357 | None:intergenic |
| TTTGAACACTACCGGTTGTC+CGG | 0.397021 | tig0016715:-452217 | None:intergenic |
| TCCTTACATGTTCATGTTCG+TGG | 0.406986 | tig0016715:-452497 | None:intergenic |
| GGAATTTGAGGAGTGGATAC+TGG | 0.407057 | tig0016715:-451840 | None:intergenic |
| GAAGCGAATCAGATCGATTT+CGG | 0.409639 | tig0016715:-451752 | None:intergenic |
| GTGACAGCAACGACTTTGCC+AGG | 0.413150 | tig0016715:-452150 | None:intergenic |
| GAGGAGTGGGTGGTAGTGTT+GGG | 0.413864 | tig0016715:-452004 | None:intergenic |
| CTCCATGTCGATGGCGGTGG+AGG | 0.420685 | tig0016715:+451672 | None:intergenic |
| CCTTATGTGGTAGACAAAAC+TGG | 0.423087 | tig0016715:+452315 | Msa1359740:CDS |
| CCTAACATGTCGGCTTACTT+AGG | 0.428884 | tig0016715:+452267 | Msa1359740:CDS |
| AAAATTACACAAAACTCAAC+TGG | 0.429743 | tig0016715:+451976 | Msa1359740:CDS |
| GATGAGGAAGAAGCTGTGTT+TGG | 0.431354 | tig0016715:-451911 | None:intergenic |
| CAATGTCGAGTGGGAATTTG+AGG | 0.432815 | tig0016715:-451852 | None:intergenic |
| CGAGGAGTGGGTGGTAGTGT+TGG | 0.432869 | tig0016715:-452005 | None:intergenic |
| CCAGGGTTCATGTAACCATA+TGG | 0.432952 | tig0016715:-452132 | None:intergenic |
| TAACTCCACTATTCAGTTAG+TGG | 0.450699 | tig0016715:+452362 | Msa1359740:CDS |
| TTCAGATTCTCAATCCACTT+TGG | 0.457114 | tig0016715:-452780 | None:intergenic |
| ATCCAATTCAAAAGTTCCTT+CGG | 0.462497 | tig0016715:-451712 | None:intergenic |
| AATGATCACACAATTCCCTT+TGG | 0.478379 | tig0016715:-452643 | None:intergenic |
| GTGGCTGAATCTTTGGTTGG+TGG | 0.478548 | tig0016715:+452381 | Msa1359740:CDS |
| AGATTCTCAATCCACTTTGG+AGG | 0.478987 | tig0016715:-452777 | None:intergenic |
| AAATCCTAATTCGTACTCCT+TGG | 0.479712 | tig0016715:+451947 | Msa1359740:CDS |
| TTCTCAATCCACTTTGGAGG+TGG | 0.485651 | tig0016715:-452774 | None:intergenic |
| TTCAGCCACTAACTGAATAG+TGG | 0.487571 | tig0016715:-452367 | None:intergenic |
| CGGATTTGTGTCTTGCCAAA+GGG | 0.495229 | tig0016715:+452628 | Msa1359740:CDS |
| TTAAAAGTGCCAACAACGAT+AGG | 0.496039 | tig0016715:-452189 | None:intergenic |
| TCCGATCGATTTGTAGCAAG+TGG | 0.496425 | tig0016715:+451773 | Msa1359740:CDS |
| CGAATTAGGATTTGTGGTGG+TGG | 0.496853 | tig0016715:-451937 | None:intergenic |
| AACACAGATGACGTGCCATA+TGG | 0.497392 | tig0016715:+452117 | Msa1359740:CDS |
| CGATGGCGGTGGAGGCAGAT+TGG | 0.501078 | tig0016715:+451680 | Msa1359740:CDS |
| ACCACGAACATGAACATGTA+AGG | 0.505161 | tig0016715:+452496 | Msa1359740:CDS |
| GTCGTTGCTGTCACTTGCCA+TGG | 0.508046 | tig0016715:+452159 | Msa1359740:CDS |
| AGTGGAGTTATCTGGTTCAA+TGG | 0.508785 | tig0016715:-452349 | None:intergenic |
| ACTGGATGGTTAAAATGTTA+CGG | 0.510475 | tig0016715:-451822 | None:intergenic |
| AACCGGTAGTGTTCAAATGC+GGG | 0.511958 | tig0016715:+452223 | Msa1359740:CDS |
| TTTCAAAGGCCGACCTTATG+TGG | 0.512326 | tig0016715:+452302 | Msa1359740:CDS |
| TGGCGATATCAAATTCTTAG+TGG | 0.518608 | tig0016715:+452404 | Msa1359740:CDS |
| TTTGAGGAGTGGATACTGGA+TGG | 0.521703 | tig0016715:-451836 | None:intergenic |
| GGATATGGAGTGGGTGAAGG+TGG | 0.524790 | tig0016715:+452545 | Msa1359740:CDS |
| TCCCCGCATTTGAACACTAC+CGG | 0.526550 | tig0016715:-452225 | None:intergenic |
| ATCCTCCATGTCGATGGCGG+TGG | 0.528055 | tig0016715:+451669 | None:intergenic |
| GTGAGAAATGTCCGAGGAGT+GGG | 0.529372 | tig0016715:-452017 | None:intergenic |
| TCGGATTTGTGTCTTGCCAA+AGG | 0.531536 | tig0016715:+452627 | Msa1359740:CDS |
| GGAGTACGAATTAGGATTTG+TGG | 0.532902 | tig0016715:-451943 | None:intergenic |
| TAAAAGTGCCAACAACGATA+GGG | 0.541260 | tig0016715:-452188 | None:intergenic |
| AAAGGATATGGAGTGGGTGA+AGG | 0.544340 | tig0016715:+452542 | Msa1359740:CDS |
| TTAGTGGCTGAATCTTTGGT+TGG | 0.546051 | tig0016715:+452378 | Msa1359740:CDS |
| TTGAAGTCGAAGACAGGAGA+AGG | 0.548552 | tig0016715:-452045 | None:intergenic |
| TCGAAGACAGGAGAAGGAAA+AGG | 0.548613 | tig0016715:-452039 | None:intergenic |
| AAATTGTTGAAGTCGAAGAC+AGG | 0.549220 | tig0016715:-452051 | None:intergenic |
| TGCCTCCACCGCCATCGACA+TGG | 0.550573 | tig0016715:-451674 | None:intergenic |
| GTTACGGTGGTGATTTGGGA+TGG | 0.559097 | tig0016715:-451806 | None:intergenic |
| GCTGAATCTTTGGTTGGTGG+TGG | 0.561980 | tig0016715:+452384 | Msa1359740:CDS |
| GGAAGAAGCTGTGTTTGGAG+AGG | 0.580108 | tig0016715:-451906 | None:intergenic |
| CAACACTACCACCCACTCCT+CGG | 0.581458 | tig0016715:+452006 | Msa1359740:CDS |
| GCTAGCATCCTCCATGTCGA+TGG | 0.588331 | tig0016715:+451663 | None:intergenic |
| GAAGGTTATTCCTAACATGT+CGG | 0.589130 | tig0016715:+452257 | Msa1359740:CDS |
| TGTTCTGGCCACCTCCAAAG+TGG | 0.594726 | tig0016715:+452766 | Msa1359740:CDS |
| ACGAAAAGTCATTATACAGA+CGG | 0.599089 | tig0016715:-452464 | None:intergenic |
| TATTCAGGATAATCGGTCAA+AGG | 0.599889 | tig0016715:-452735 | None:intergenic |
| GCCACTTGCTACAAATCGAT+CGG | 0.603998 | tig0016715:-451774 | None:intergenic |
| GGTGAGAAATGTCCGAGGAG+TGG | 0.606106 | tig0016715:-452018 | None:intergenic |
| TAATGGAATCAATGTCGAGT+GGG | 0.612257 | tig0016715:-451861 | None:intergenic |
| TGTTTGGAGAGGTTACAGAA+TGG | 0.615612 | tig0016715:-451895 | None:intergenic |
| ATGCGGGGATGATAATTGGA+AGG | 0.616474 | tig0016715:+452239 | Msa1359740:CDS |
| TTTGTGGTGGTGGTTTGATG+AGG | 0.616532 | tig0016715:-451927 | None:intergenic |
| AGAAATGTCCGAGGAGTGGG+TGG | 0.622073 | tig0016715:-452014 | None:intergenic |
| AGCATCCTCCATGTCGATGG+CGG | 0.625682 | tig0016715:+451666 | None:intergenic |
| TCGAGTGGGAATTTGAGGAG+TGG | 0.626686 | tig0016715:-451847 | None:intergenic |
| GGTGAAGGTGGCAAATTTAG+GGG | 0.632817 | tig0016715:+452557 | Msa1359740:CDS |
| ACCGGTAGTGTTCAAATGCG+GGG | 0.634231 | tig0016715:+452224 | Msa1359740:CDS |
| CATCTGTGTTGTCGTGACGA+TGG | 0.639772 | tig0016715:-452104 | None:intergenic |
| TGACAGCAACGACTTTGCCA+GGG | 0.644576 | tig0016715:-452149 | None:intergenic |
| CCATATGGTTACATGAACCC+TGG | 0.645312 | tig0016715:+452132 | Msa1359740:CDS |
| ATGTGGTAGACAAAACTGGA+TGG | 0.655358 | tig0016715:+452319 | Msa1359740:CDS |
| TTAATGGAATCAATGTCGAG+TGG | 0.660878 | tig0016715:-451862 | None:intergenic |
| GTACGAATTAGGATTTGTGG+TGG | 0.660887 | tig0016715:-451940 | None:intergenic |
| AGATTGGTCTGAACTGCCGA+AGG | 0.661347 | tig0016715:+451696 | Msa1359740:CDS |
| AAATTCTTAGTGGAGAGCGA+TGG | 0.664986 | tig0016715:+452414 | Msa1359740:CDS |
| CAACCGGTAGTGTTCAAATG+CGG | 0.669905 | tig0016715:+452222 | Msa1359740:CDS |
| GAAAAGGTGAGAAATGTCCG+AGG | 0.710899 | tig0016715:-452023 | None:intergenic |
| GGATGGTTAAAATGTTACGG+TGG | 0.793282 | tig0016715:-451819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTGTTTAAGCTTAATAAAA+AGG | + | tig0016715:452524-452543 | Msa1359740:CDS | 20.0% |
| !! | TAAGCTTAATAAAAAGGATA+TGG | + | tig0016715:452530-452549 | Msa1359740:CDS | 20.0% |
| !! | TGTGTTTAAGCTTAATAAAA+AGG | + | tig0016715:452524-452543 | Msa1359740:CDS | 20.0% |
| !! | TAAGCTTAATAAAAAGGATA+TGG | + | tig0016715:452530-452549 | Msa1359740:CDS | 20.0% |
| !!! | TGTGTAATTTTAATGATCCA+AGG | - | tig0016715:451967-451986 | None:intergenic | 25.0% |
| ! | AAAATTACACAAAACTCAAC+TGG | + | tig0016715:451976-451995 | Msa1359740:CDS | 25.0% |
| ! | CAATTTATCTCTCATTCATT+TGG | + | tig0016715:452068-452087 | Msa1359740:CDS | 25.0% |
| ! | TTAATAAAAAGGATATGGAG+TGG | + | tig0016715:452535-452554 | Msa1359740:CDS | 25.0% |
| ! | TAATAAAAAGGATATGGAGT+GGG | + | tig0016715:452536-452555 | Msa1359740:CDS | 25.0% |
| ! | TTTACGATATTCAGGATAAT+CGG | - | tig0016715:452745-452764 | None:intergenic | 25.0% |
| !!! | TGTGTAATTTTAATGATCCA+AGG | - | tig0016715:451967-451986 | None:intergenic | 25.0% |
| ! | AAAATTACACAAAACTCAAC+TGG | + | tig0016715:451976-451995 | Msa1359740:CDS | 25.0% |
| ! | CAATTTATCTCTCATTCATT+TGG | + | tig0016715:452068-452087 | Msa1359740:CDS | 25.0% |
| ! | TTAATAAAAAGGATATGGAG+TGG | + | tig0016715:452535-452554 | Msa1359740:CDS | 25.0% |
| ! | TAATAAAAAGGATATGGAGT+GGG | + | tig0016715:452536-452555 | Msa1359740:CDS | 25.0% |
| ! | TTTACGATATTCAGGATAAT+CGG | - | tig0016715:452745-452764 | None:intergenic | 25.0% |
| ATCCAATTCAAAAGTTCCTT+CGG | - | tig0016715:451715-451734 | None:intergenic | 30.0% | |
| ACTGGATGGTTAAAATGTTA+CGG | - | tig0016715:451825-451844 | None:intergenic | 30.0% | |
| ACGAAAAGTCATTATACAGA+CGG | - | tig0016715:452467-452486 | None:intergenic | 30.0% | |
| CAGAACAATTTACGATATTC+AGG | - | tig0016715:452753-452772 | None:intergenic | 30.0% | |
| CTGAATATCGTAAATTGTTC+TGG | + | tig0016715:452751-452770 | Msa1359740:CDS | 30.0% | |
| ATCCAATTCAAAAGTTCCTT+CGG | - | tig0016715:451715-451734 | None:intergenic | 30.0% | |
| ACTGGATGGTTAAAATGTTA+CGG | - | tig0016715:451825-451844 | None:intergenic | 30.0% | |
| ACGAAAAGTCATTATACAGA+CGG | - | tig0016715:452467-452486 | None:intergenic | 30.0% | |
| CAGAACAATTTACGATATTC+AGG | - | tig0016715:452753-452772 | None:intergenic | 30.0% | |
| CTGAATATCGTAAATTGTTC+TGG | + | tig0016715:452751-452770 | Msa1359740:CDS | 30.0% | |
| AAATGTTACGGTGGTGATTT+GGG | - | tig0016715:451813-451832 | None:intergenic | 35.0% | |
| AAAATGTTACGGTGGTGATT+TGG | - | tig0016715:451814-451833 | None:intergenic | 35.0% | |
| TAATGGAATCAATGTCGAGT+GGG | - | tig0016715:451864-451883 | None:intergenic | 35.0% | |
| TTAATGGAATCAATGTCGAG+TGG | - | tig0016715:451865-451884 | None:intergenic | 35.0% | |
| ! | GAATGGAGTGTTACTGTTAA+TGG | - | tig0016715:451881-451900 | None:intergenic | 35.0% |
| AAATCCTAATTCGTACTCCT+TGG | + | tig0016715:451947-451966 | Msa1359740:CDS | 35.0% | |
| AAATTGTTGAAGTCGAAGAC+AGG | - | tig0016715:452054-452073 | None:intergenic | 35.0% | |
| !! | TAAAAGTGCCAACAACGATA+GGG | - | tig0016715:452191-452210 | None:intergenic | 35.0% |
| !! | TTAAAAGTGCCAACAACGAT+AGG | - | tig0016715:452192-452211 | None:intergenic | 35.0% |
| !! | GTTGGCACTTTTAATTGTAC+CGG | + | tig0016715:452198-452217 | Msa1359740:CDS | 35.0% |
| !! | TTTTAATTGTACCGGACAAC+CGG | + | tig0016715:452206-452225 | Msa1359740:CDS | 35.0% |
| GAAGGTTATTCCTAACATGT+CGG | + | tig0016715:452257-452276 | Msa1359740:CDS | 35.0% | |
| ! | TTTTGTCTACCACATAAGGT+CGG | - | tig0016715:452314-452333 | None:intergenic | 35.0% |
| ! | AACTGAATAGTGGAGTTATC+TGG | - | tig0016715:452360-452379 | None:intergenic | 35.0% |
| TAACTCCACTATTCAGTTAG+TGG | + | tig0016715:452362-452381 | Msa1359740:CDS | 35.0% | |
| TGGCGATATCAAATTCTTAG+TGG | + | tig0016715:452404-452423 | Msa1359740:CDS | 35.0% | |
| !!! | TTCATTTTCTGTTTCTGCGT+CGG | + | tig0016715:452608-452627 | Msa1359740:CDS | 35.0% |
| AATGATCACACAATTCCCTT+TGG | - | tig0016715:452646-452665 | None:intergenic | 35.0% | |
| !!! | GTATTGTGAGAGCTCTTTTT+TGG | + | tig0016715:452689-452708 | Msa1359740:CDS | 35.0% |
| !!! | TCTTTTTTGGACTTGGATGA+TGG | + | tig0016715:452702-452721 | Msa1359740:CDS | 35.0% |
| TATTCAGGATAATCGGTCAA+AGG | - | tig0016715:452738-452757 | None:intergenic | 35.0% | |
| TTCAGATTCTCAATCCACTT+TGG | - | tig0016715:452783-452802 | None:intergenic | 35.0% | |
| AAATGTTACGGTGGTGATTT+GGG | - | tig0016715:451813-451832 | None:intergenic | 35.0% | |
| AAAATGTTACGGTGGTGATT+TGG | - | tig0016715:451814-451833 | None:intergenic | 35.0% | |
| TAATGGAATCAATGTCGAGT+GGG | - | tig0016715:451864-451883 | None:intergenic | 35.0% | |
| TTAATGGAATCAATGTCGAG+TGG | - | tig0016715:451865-451884 | None:intergenic | 35.0% | |
| ! | GAATGGAGTGTTACTGTTAA+TGG | - | tig0016715:451881-451900 | None:intergenic | 35.0% |
| AAATCCTAATTCGTACTCCT+TGG | + | tig0016715:451947-451966 | Msa1359740:CDS | 35.0% | |
| AAATTGTTGAAGTCGAAGAC+AGG | - | tig0016715:452054-452073 | None:intergenic | 35.0% | |
| !! | TAAAAGTGCCAACAACGATA+GGG | - | tig0016715:452191-452210 | None:intergenic | 35.0% |
| !! | TTAAAAGTGCCAACAACGAT+AGG | - | tig0016715:452192-452211 | None:intergenic | 35.0% |
| !! | GTTGGCACTTTTAATTGTAC+CGG | + | tig0016715:452198-452217 | Msa1359740:CDS | 35.0% |
| !! | TTTTAATTGTACCGGACAAC+CGG | + | tig0016715:452206-452225 | Msa1359740:CDS | 35.0% |
| GAAGGTTATTCCTAACATGT+CGG | + | tig0016715:452257-452276 | Msa1359740:CDS | 35.0% | |
| ! | TTTTGTCTACCACATAAGGT+CGG | - | tig0016715:452314-452333 | None:intergenic | 35.0% |
| ! | AACTGAATAGTGGAGTTATC+TGG | - | tig0016715:452360-452379 | None:intergenic | 35.0% |
| TAACTCCACTATTCAGTTAG+TGG | + | tig0016715:452362-452381 | Msa1359740:CDS | 35.0% | |
| TGGCGATATCAAATTCTTAG+TGG | + | tig0016715:452404-452423 | Msa1359740:CDS | 35.0% | |
| !!! | TTCATTTTCTGTTTCTGCGT+CGG | + | tig0016715:452608-452627 | Msa1359740:CDS | 35.0% |
| AATGATCACACAATTCCCTT+TGG | - | tig0016715:452646-452665 | None:intergenic | 35.0% | |
| !!! | GTATTGTGAGAGCTCTTTTT+TGG | + | tig0016715:452689-452708 | Msa1359740:CDS | 35.0% |
| !!! | TCTTTTTTGGACTTGGATGA+TGG | + | tig0016715:452702-452721 | Msa1359740:CDS | 35.0% |
| TATTCAGGATAATCGGTCAA+AGG | - | tig0016715:452738-452757 | None:intergenic | 35.0% | |
| TTCAGATTCTCAATCCACTT+TGG | - | tig0016715:452783-452802 | None:intergenic | 35.0% | |
| ! | TGCCGAAGGAACTTTTGAAT+TGG | + | tig0016715:451710-451729 | Msa1359740:CDS | 40.0% |
| ! | GAAGCGAATCAGATCGATTT+CGG | - | tig0016715:451755-451774 | None:intergenic | 40.0% |
| GGATGGTTAAAATGTTACGG+TGG | - | tig0016715:451822-451841 | None:intergenic | 40.0% | |
| TGTTTGGAGAGGTTACAGAA+TGG | - | tig0016715:451898-451917 | None:intergenic | 40.0% | |
| GTACGAATTAGGATTTGTGG+TGG | - | tig0016715:451943-451962 | None:intergenic | 40.0% | |
| GGAGTACGAATTAGGATTTG+TGG | - | tig0016715:451946-451965 | None:intergenic | 40.0% | |
| ! | TGATCCAAGGAGTACGAATT+AGG | - | tig0016715:451954-451973 | None:intergenic | 40.0% |
| !!! | CAACGATAGGGTTTTTTCCA+TGG | - | tig0016715:452179-452198 | None:intergenic | 40.0% |
| GGAAAAAACCCTATCGTTGT+TGG | + | tig0016715:452180-452199 | Msa1359740:CDS | 40.0% | |
| TCAAATGCGGGGATGATAAT+TGG | + | tig0016715:452235-452254 | Msa1359740:CDS | 40.0% | |
| ! | GGAGACATCTACGTTTTCAA+AGG | + | tig0016715:452288-452307 | Msa1359740:CDS | 40.0% |
| !! | CCAGTTTTGTCTACCACATA+AGG | - | tig0016715:452318-452337 | None:intergenic | 40.0% |
| CCTTATGTGGTAGACAAAAC+TGG | + | tig0016715:452315-452334 | Msa1359740:CDS | 40.0% | |
| ATGTGGTAGACAAAACTGGA+TGG | + | tig0016715:452319-452338 | Msa1359740:CDS | 40.0% | |
| ! | AGTGGAGTTATCTGGTTCAA+TGG | - | tig0016715:452352-452371 | None:intergenic | 40.0% |
| TTCAGCCACTAACTGAATAG+TGG | - | tig0016715:452370-452389 | None:intergenic | 40.0% | |
| TCAGTTAGTGGCTGAATCTT+TGG | + | tig0016715:452374-452393 | Msa1359740:CDS | 40.0% | |
| TTAGTGGCTGAATCTTTGGT+TGG | + | tig0016715:452378-452397 | Msa1359740:CDS | 40.0% | |
| AAATTCTTAGTGGAGAGCGA+TGG | + | tig0016715:452414-452433 | Msa1359740:CDS | 40.0% | |
| ACCACGAACATGAACATGTA+AGG | + | tig0016715:452496-452515 | Msa1359740:CDS | 40.0% | |
| TCCTTACATGTTCATGTTCG+TGG | - | tig0016715:452500-452519 | None:intergenic | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | + | tig0016715:452575-452594 | Msa1359740:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | + | tig0016715:452576-452595 | Msa1359740:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | + | tig0016715:452577-452596 | Msa1359740:CDS | 40.0% |
| !!! | TGAGAGCTCTTTTTTGGACT+TGG | + | tig0016715:452695-452714 | Msa1359740:CDS | 40.0% |
| !! | TTTTGGACTTGGATGATGGT+CGG | + | tig0016715:452706-452725 | Msa1359740:CDS | 40.0% |
| AGATTCTCAATCCACTTTGG+AGG | - | tig0016715:452780-452799 | None:intergenic | 40.0% | |
| ! | TGCCGAAGGAACTTTTGAAT+TGG | + | tig0016715:451710-451729 | Msa1359740:CDS | 40.0% |
| ! | GAAGCGAATCAGATCGATTT+CGG | - | tig0016715:451755-451774 | None:intergenic | 40.0% |
| GGATGGTTAAAATGTTACGG+TGG | - | tig0016715:451822-451841 | None:intergenic | 40.0% | |
| TGTTTGGAGAGGTTACAGAA+TGG | - | tig0016715:451898-451917 | None:intergenic | 40.0% | |
| GTACGAATTAGGATTTGTGG+TGG | - | tig0016715:451943-451962 | None:intergenic | 40.0% | |
| GGAGTACGAATTAGGATTTG+TGG | - | tig0016715:451946-451965 | None:intergenic | 40.0% | |
| ! | TGATCCAAGGAGTACGAATT+AGG | - | tig0016715:451954-451973 | None:intergenic | 40.0% |
| !!! | CAACGATAGGGTTTTTTCCA+TGG | - | tig0016715:452179-452198 | None:intergenic | 40.0% |
| GGAAAAAACCCTATCGTTGT+TGG | + | tig0016715:452180-452199 | Msa1359740:CDS | 40.0% | |
| TCAAATGCGGGGATGATAAT+TGG | + | tig0016715:452235-452254 | Msa1359740:CDS | 40.0% | |
| ! | GGAGACATCTACGTTTTCAA+AGG | + | tig0016715:452288-452307 | Msa1359740:CDS | 40.0% |
| !! | CCAGTTTTGTCTACCACATA+AGG | - | tig0016715:452318-452337 | None:intergenic | 40.0% |
| CCTTATGTGGTAGACAAAAC+TGG | + | tig0016715:452315-452334 | Msa1359740:CDS | 40.0% | |
| ATGTGGTAGACAAAACTGGA+TGG | + | tig0016715:452319-452338 | Msa1359740:CDS | 40.0% | |
| ! | AGTGGAGTTATCTGGTTCAA+TGG | - | tig0016715:452352-452371 | None:intergenic | 40.0% |
| TTCAGCCACTAACTGAATAG+TGG | - | tig0016715:452370-452389 | None:intergenic | 40.0% | |
| TCAGTTAGTGGCTGAATCTT+TGG | + | tig0016715:452374-452393 | Msa1359740:CDS | 40.0% | |
| TTAGTGGCTGAATCTTTGGT+TGG | + | tig0016715:452378-452397 | Msa1359740:CDS | 40.0% | |
| AAATTCTTAGTGGAGAGCGA+TGG | + | tig0016715:452414-452433 | Msa1359740:CDS | 40.0% | |
| ACCACGAACATGAACATGTA+AGG | + | tig0016715:452496-452515 | Msa1359740:CDS | 40.0% | |
| TCCTTACATGTTCATGTTCG+TGG | - | tig0016715:452500-452519 | None:intergenic | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | + | tig0016715:452575-452594 | Msa1359740:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | + | tig0016715:452576-452595 | Msa1359740:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | + | tig0016715:452577-452596 | Msa1359740:CDS | 40.0% |
| !!! | TGAGAGCTCTTTTTTGGACT+TGG | + | tig0016715:452695-452714 | Msa1359740:CDS | 40.0% |
| !! | TTTTGGACTTGGATGATGGT+CGG | + | tig0016715:452706-452725 | Msa1359740:CDS | 40.0% |
| AGATTCTCAATCCACTTTGG+AGG | - | tig0016715:452780-452799 | None:intergenic | 40.0% | |
| !! | TCCGATCGATTTGTAGCAAG+TGG | + | tig0016715:451773-451792 | Msa1359740:CDS | 45.0% |
| ! | GCCACTTGCTACAAATCGAT+CGG | - | tig0016715:451777-451796 | None:intergenic | 45.0% |
| TTTGAGGAGTGGATACTGGA+TGG | - | tig0016715:451839-451858 | None:intergenic | 45.0% | |
| GGAATTTGAGGAGTGGATAC+TGG | - | tig0016715:451843-451862 | None:intergenic | 45.0% | |
| CAATGTCGAGTGGGAATTTG+AGG | - | tig0016715:451855-451874 | None:intergenic | 45.0% | |
| GATGAGGAAGAAGCTGTGTT+TGG | - | tig0016715:451914-451933 | None:intergenic | 45.0% | |
| !! | TTTGTGGTGGTGGTTTGATG+AGG | - | tig0016715:451930-451949 | None:intergenic | 45.0% |
| CGAATTAGGATTTGTGGTGG+TGG | - | tig0016715:451940-451959 | None:intergenic | 45.0% | |
| GAAAAGGTGAGAAATGTCCG+AGG | - | tig0016715:452026-452045 | None:intergenic | 45.0% | |
| TCGAAGACAGGAGAAGGAAA+AGG | - | tig0016715:452042-452061 | None:intergenic | 45.0% | |
| TTGAAGTCGAAGACAGGAGA+AGG | - | tig0016715:452048-452067 | None:intergenic | 45.0% | |
| AACACAGATGACGTGCCATA+TGG | + | tig0016715:452117-452136 | Msa1359740:CDS | 45.0% | |
| CCAGGGTTCATGTAACCATA+TGG | - | tig0016715:452135-452154 | None:intergenic | 45.0% | |
| CCATATGGTTACATGAACCC+TGG | + | tig0016715:452132-452151 | Msa1359740:CDS | 45.0% | |
| ! | TTTGAACACTACCGGTTGTC+CGG | - | tig0016715:452220-452239 | None:intergenic | 45.0% |
| CAACCGGTAGTGTTCAAATG+CGG | + | tig0016715:452222-452241 | Msa1359740:CDS | 45.0% | |
| AACCGGTAGTGTTCAAATGC+GGG | + | tig0016715:452223-452242 | Msa1359740:CDS | 45.0% | |
| ATGCGGGGATGATAATTGGA+AGG | + | tig0016715:452239-452258 | Msa1359740:CDS | 45.0% | |
| CCTAAGTAAGCCGACATGTT+AGG | - | tig0016715:452270-452289 | None:intergenic | 45.0% | |
| !! | CCTAACATGTCGGCTTACTT+AGG | + | tig0016715:452267-452286 | Msa1359740:CDS | 45.0% |
| TTTCAAAGGCCGACCTTATG+TGG | + | tig0016715:452302-452321 | Msa1359740:CDS | 45.0% | |
| AAAGGATATGGAGTGGGTGA+AGG | + | tig0016715:452542-452561 | Msa1359740:CDS | 45.0% | |
| TGGGTGAAGGTGGCAAATTT+AGG | + | tig0016715:452555-452574 | Msa1359740:CDS | 45.0% | |
| GGGTGAAGGTGGCAAATTTA+GGG | + | tig0016715:452556-452575 | Msa1359740:CDS | 45.0% | |
| GGTGAAGGTGGCAAATTTAG+GGG | + | tig0016715:452557-452576 | Msa1359740:CDS | 45.0% | |
| TCGGATTTGTGTCTTGCCAA+AGG | + | tig0016715:452627-452646 | Msa1359740:CDS | 45.0% | |
| CGGATTTGTGTCTTGCCAAA+GGG | + | tig0016715:452628-452647 | Msa1359740:CDS | 45.0% | |
| ! | TTCTCAATCCACTTTGGAGG+TGG | - | tig0016715:452777-452796 | None:intergenic | 45.0% |
| !! | TCCGATCGATTTGTAGCAAG+TGG | + | tig0016715:451773-451792 | Msa1359740:CDS | 45.0% |
| ! | GCCACTTGCTACAAATCGAT+CGG | - | tig0016715:451777-451796 | None:intergenic | 45.0% |
| TTTGAGGAGTGGATACTGGA+TGG | - | tig0016715:451839-451858 | None:intergenic | 45.0% | |
| GGAATTTGAGGAGTGGATAC+TGG | - | tig0016715:451843-451862 | None:intergenic | 45.0% | |
| CAATGTCGAGTGGGAATTTG+AGG | - | tig0016715:451855-451874 | None:intergenic | 45.0% | |
| GATGAGGAAGAAGCTGTGTT+TGG | - | tig0016715:451914-451933 | None:intergenic | 45.0% | |
| !! | TTTGTGGTGGTGGTTTGATG+AGG | - | tig0016715:451930-451949 | None:intergenic | 45.0% |
| CGAATTAGGATTTGTGGTGG+TGG | - | tig0016715:451940-451959 | None:intergenic | 45.0% | |
| GAAAAGGTGAGAAATGTCCG+AGG | - | tig0016715:452026-452045 | None:intergenic | 45.0% | |
| TCGAAGACAGGAGAAGGAAA+AGG | - | tig0016715:452042-452061 | None:intergenic | 45.0% | |
| TTGAAGTCGAAGACAGGAGA+AGG | - | tig0016715:452048-452067 | None:intergenic | 45.0% | |
| AACACAGATGACGTGCCATA+TGG | + | tig0016715:452117-452136 | Msa1359740:CDS | 45.0% | |
| CCAGGGTTCATGTAACCATA+TGG | - | tig0016715:452135-452154 | None:intergenic | 45.0% | |
| CCATATGGTTACATGAACCC+TGG | + | tig0016715:452132-452151 | Msa1359740:CDS | 45.0% | |
| ! | TTTGAACACTACCGGTTGTC+CGG | - | tig0016715:452220-452239 | None:intergenic | 45.0% |
| CAACCGGTAGTGTTCAAATG+CGG | + | tig0016715:452222-452241 | Msa1359740:CDS | 45.0% | |
| AACCGGTAGTGTTCAAATGC+GGG | + | tig0016715:452223-452242 | Msa1359740:CDS | 45.0% | |
| ATGCGGGGATGATAATTGGA+AGG | + | tig0016715:452239-452258 | Msa1359740:CDS | 45.0% | |
| CCTAAGTAAGCCGACATGTT+AGG | - | tig0016715:452270-452289 | None:intergenic | 45.0% | |
| !! | CCTAACATGTCGGCTTACTT+AGG | + | tig0016715:452267-452286 | Msa1359740:CDS | 45.0% |
| TTTCAAAGGCCGACCTTATG+TGG | + | tig0016715:452302-452321 | Msa1359740:CDS | 45.0% | |
| AAAGGATATGGAGTGGGTGA+AGG | + | tig0016715:452542-452561 | Msa1359740:CDS | 45.0% | |
| TGGGTGAAGGTGGCAAATTT+AGG | + | tig0016715:452555-452574 | Msa1359740:CDS | 45.0% | |
| GGGTGAAGGTGGCAAATTTA+GGG | + | tig0016715:452556-452575 | Msa1359740:CDS | 45.0% | |
| GGTGAAGGTGGCAAATTTAG+GGG | + | tig0016715:452557-452576 | Msa1359740:CDS | 45.0% | |
| TCGGATTTGTGTCTTGCCAA+AGG | + | tig0016715:452627-452646 | Msa1359740:CDS | 45.0% | |
| CGGATTTGTGTCTTGCCAAA+GGG | + | tig0016715:452628-452647 | Msa1359740:CDS | 45.0% | |
| ! | TTCTCAATCCACTTTGGAGG+TGG | - | tig0016715:452777-452796 | None:intergenic | 45.0% |
| !! | AGATTGGTCTGAACTGCCGA+AGG | + | tig0016715:451696-451715 | Msa1359740:CDS | 50.0% |
| ! | GTTACGGTGGTGATTTGGGA+TGG | - | tig0016715:451809-451828 | None:intergenic | 50.0% |
| TCGAGTGGGAATTTGAGGAG+TGG | - | tig0016715:451850-451869 | None:intergenic | 50.0% | |
| GGAAGAAGCTGTGTTTGGAG+AGG | - | tig0016715:451909-451928 | None:intergenic | 50.0% | |
| GTGAGAAATGTCCGAGGAGT+GGG | - | tig0016715:452020-452039 | None:intergenic | 50.0% | |
| CATCTGTGTTGTCGTGACGA+TGG | - | tig0016715:452107-452126 | None:intergenic | 50.0% | |
| TGACAGCAACGACTTTGCCA+GGG | - | tig0016715:452152-452171 | None:intergenic | 50.0% | |
| ACCGGTAGTGTTCAAATGCG+GGG | + | tig0016715:452224-452243 | Msa1359740:CDS | 50.0% | |
| TCCCCGCATTTGAACACTAC+CGG | - | tig0016715:452228-452247 | None:intergenic | 50.0% | |
| GTGGCTGAATCTTTGGTTGG+TGG | + | tig0016715:452381-452400 | Msa1359740:CDS | 50.0% | |
| !! | GCTGAATCTTTGGTTGGTGG+TGG | + | tig0016715:452384-452403 | Msa1359740:CDS | 50.0% |
| !! | AGATTGGTCTGAACTGCCGA+AGG | + | tig0016715:451696-451715 | Msa1359740:CDS | 50.0% |
| ! | GTTACGGTGGTGATTTGGGA+TGG | - | tig0016715:451809-451828 | None:intergenic | 50.0% |
| TCGAGTGGGAATTTGAGGAG+TGG | - | tig0016715:451850-451869 | None:intergenic | 50.0% | |
| GGAAGAAGCTGTGTTTGGAG+AGG | - | tig0016715:451909-451928 | None:intergenic | 50.0% | |
| GTGAGAAATGTCCGAGGAGT+GGG | - | tig0016715:452020-452039 | None:intergenic | 50.0% | |
| CATCTGTGTTGTCGTGACGA+TGG | - | tig0016715:452107-452126 | None:intergenic | 50.0% | |
| TGACAGCAACGACTTTGCCA+GGG | - | tig0016715:452152-452171 | None:intergenic | 50.0% | |
| ACCGGTAGTGTTCAAATGCG+GGG | + | tig0016715:452224-452243 | Msa1359740:CDS | 50.0% | |
| TCCCCGCATTTGAACACTAC+CGG | - | tig0016715:452228-452247 | None:intergenic | 50.0% | |
| GTGGCTGAATCTTTGGTTGG+TGG | + | tig0016715:452381-452400 | Msa1359740:CDS | 50.0% | |
| !! | GCTGAATCTTTGGTTGGTGG+TGG | + | tig0016715:452384-452403 | Msa1359740:CDS | 50.0% |
| ! | GAGGAGTGGGTGGTAGTGTT+GGG | - | tig0016715:452007-452026 | None:intergenic | 55.0% |
| CAACACTACCACCCACTCCT+CGG | + | tig0016715:452006-452025 | Msa1359740:CDS | 55.0% | |
| AGAAATGTCCGAGGAGTGGG+TGG | - | tig0016715:452017-452036 | None:intergenic | 55.0% | |
| GGTGAGAAATGTCCGAGGAG+TGG | - | tig0016715:452021-452040 | None:intergenic | 55.0% | |
| GTGACAGCAACGACTTTGCC+AGG | - | tig0016715:452153-452172 | None:intergenic | 55.0% | |
| ! | GTCGTTGCTGTCACTTGCCA+TGG | + | tig0016715:452159-452178 | Msa1359740:CDS | 55.0% |
| GGATATGGAGTGGGTGAAGG+TGG | + | tig0016715:452545-452564 | Msa1359740:CDS | 55.0% | |
| TGTTCTGGCCACCTCCAAAG+TGG | + | tig0016715:452766-452785 | Msa1359740:CDS | 55.0% | |
| ! | GAGGAGTGGGTGGTAGTGTT+GGG | - | tig0016715:452007-452026 | None:intergenic | 55.0% |
| CAACACTACCACCCACTCCT+CGG | + | tig0016715:452006-452025 | Msa1359740:CDS | 55.0% | |
| AGAAATGTCCGAGGAGTGGG+TGG | - | tig0016715:452017-452036 | None:intergenic | 55.0% | |
| GGTGAGAAATGTCCGAGGAG+TGG | - | tig0016715:452021-452040 | None:intergenic | 55.0% | |
| GTGACAGCAACGACTTTGCC+AGG | - | tig0016715:452153-452172 | None:intergenic | 55.0% | |
| ! | GTCGTTGCTGTCACTTGCCA+TGG | + | tig0016715:452159-452178 | Msa1359740:CDS | 55.0% |
| GGATATGGAGTGGGTGAAGG+TGG | + | tig0016715:452545-452564 | Msa1359740:CDS | 55.0% | |
| TGTTCTGGCCACCTCCAAAG+TGG | + | tig0016715:452766-452785 | Msa1359740:CDS | 55.0% | |
| ! | CGAGGAGTGGGTGGTAGTGT+TGG | - | tig0016715:452008-452027 | None:intergenic | 60.0% |
| ! | CGAGGAGTGGGTGGTAGTGT+TGG | - | tig0016715:452008-452027 | None:intergenic | 60.0% |
| ! | CGATGGCGGTGGAGGCAGAT+TGG | + | tig0016715:451680-451699 | Msa1359740:CDS | 65.0% |
| ! | CGATGGCGGTGGAGGCAGAT+TGG | + | tig0016715:451680-451699 | Msa1359740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016715 | gene | 451676 | 452809 | 451676 | ID=Msa1359740;Name=Msa1359740 |
| tig0016715 | mRNA | 451676 | 452809 | 451676 | ID=Msa1359740-mRNA-1;Parent=Msa1359740;Name=Msa1359740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|377 |
| tig0016715 | exon | 451676 | 452809 | 451676 | ID=Msa1359740-mRNA-1:exon:11442;Parent=Msa1359740-mRNA-1 |
| tig0016715 | CDS | 451676 | 452809 | 451676 | ID=Msa1359740-mRNA-1:cds;Parent=Msa1359740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
