AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAGAAAACTTGAGATAAA+AGG 0.282546 7_3:+77984707 None:intergenic
CCCAATTAGGCACTTGCTTT+GGG 0.305358 7_3:-77986679 Msa1126450:intron
CCCAATTAGGCACTTGCTTT+GGG 0.305358 7_3:-77986875 Msa1126450:intron
GCCCAATTAGGCACTTGCTT+TGG 0.322357 7_3:-77986680 Msa1126450:intron
GCCCAATTAGGCACTTGCTT+TGG 0.322357 7_3:-77986876 Msa1126450:intron
AAGGCTGCCCAAGGCTGGTT+TGG 0.323136 7_3:+77984896 None:intergenic
GGCACTTGCTTTGGGAGATC+AGG 0.334429 7_3:-77986671 Msa1126450:CDS
GGCACTTGCTTTGGGAGATC+AGG 0.334429 7_3:-77986867 Msa1126450:CDS
TTGTTTCATGAATTGCCTTT+TGG 0.339837 7_3:-77984840 Msa1126450:three_prime_UTR
ATGATCCACATCCACAAATA+TGG 0.340272 7_3:+77984966 None:intergenic
GGGGCTGCCAAGACTGTAGT+GGG 0.349111 7_3:-77988219 Msa1126450:CDS
CTCAAGGAAAATCGTATCTA+AGG 0.357147 7_3:-77987666 Msa1126450:CDS
TCATCTGTAGCCATGCTTGC+AGG 0.369312 7_3:+77986833 None:intergenic
GCTTCTAAATGTAGCCTCAT+TGG 0.379793 7_3:-77987842 Msa1126450:intron
TCATCTGTAGCCATGCTTGC+AGG 0.387125 7_3:+77987028 None:intergenic
GGCTGCCAAGACTGTAGTGG+GGG 0.390292 7_3:-77988217 Msa1126450:CDS
AACACAGTTCAGAGGGCGCC+AGG 0.390682 7_3:+77984669 None:intergenic
ATCGGGCTGTCGAGGCTTAT+AGG 0.393390 7_3:-77987700 Msa1126450:CDS
AGTTTGCATCTTTGTTTAAG+TGG 0.398316 7_3:+77984597 None:intergenic
GGTTGCTTAAAGTCTGGTTA+TGG 0.409173 7_3:+77986539 None:intergenic
CTGTCGATTGACAAGAAAAC+TGG 0.416287 7_3:-77987633 Msa1126450:CDS
TTGAACGTTAACATTGTTCA+AGG 0.416538 7_3:+77984877 None:intergenic
ACATCCACAAATATGGCATC+AGG 0.420855 7_3:+77984973 None:intergenic
ACCATGGGAGATATGTTCAT+TGG 0.420881 7_3:-77984936 Msa1126450:CDS
TGGATGTTTGAGTCCTTGTA+TGG 0.427317 7_3:-77984820 Msa1126450:three_prime_UTR
GGGCTGCCAAGACTGTAGTG+GGG 0.430289 7_3:-77988218 Msa1126450:CDS
GCTACTGCCAAGACTGCACT+GGG 0.431898 7_3:-77988240 Msa1126450:CDS
CAGACTTTAAGCAACCTCTA+TGG 0.433770 7_3:-77986532 Msa1126450:CDS
TTGCAAATTATCGTGTAGTA+AGG 0.436109 7_3:+77986573 None:intergenic
CATAGAGGTTGCTTAAAGTC+TGG 0.443079 7_3:+77986533 None:intergenic
GTTCTTTAACCAGGGTGATC+GGG 0.447646 7_3:-77987717 Msa1126450:intron
TGCTGTGGTTCGGAAAGTTA+TGG 0.448779 7_3:-77985085 Msa1126450:CDS
AACTTACTCCTAATCTTGTA+AGG 0.449123 7_3:+77987569 None:intergenic
TGAATGATCCAAACCAGCCT+TGG 0.449389 7_3:-77984904 Msa1126450:three_prime_UTR
TGTTCTTTAACCAGGGTGAT+CGG 0.449896 7_3:-77987718 Msa1126450:intron
GTTCTTTAACCAAGGTGATC+GGG 0.451825 7_3:+77988898 None:intergenic
GTTTGCATCTTTGTTTAAGT+GGG 0.452402 7_3:+77984598 None:intergenic
TTGGGAGATCAGGGTGCTGA+GGG 0.469726 7_3:-77986661 Msa1126450:CDS
TGCTGAGGAGCCTGCAAGCA+TGG 0.472976 7_3:-77986843 Msa1126450:CDS
GAATGATCCAAACCAGCCTT+GGG 0.477059 7_3:-77984903 Msa1126450:three_prime_UTR
TGTTCAAGGCTGCCCAAGGC+TGG 0.477332 7_3:+77984891 None:intergenic
CCGAACCACAGCAGTACTCT+TGG 0.477785 7_3:+77985095 None:intergenic
TTTGGCAGGGTTTAAGAGGA+AGG 0.479372 7_3:-77987080 Msa1126450:intron
ACGATAATTTGCAAGAATTG+AGG 0.484412 7_3:-77986564 Msa1126450:CDS
GGCTACTGCCAAGACTGCAC+TGG 0.484854 7_3:-77988241 Msa1126450:CDS
TGTTCTTTAACCAAGGTGAT+CGG 0.484941 7_3:+77988897 None:intergenic
GCTGTGGTTCGGAAAGTTAT+GGG 0.485733 7_3:-77985084 Msa1126450:CDS
GATCACCTTGGTTAAAGAAC+AGG 0.486086 7_3:-77988895 Msa1126450:intron
GCACTTGCTTTGGGAGATCA+GGG 0.489295 7_3:-77986670 Msa1126450:CDS
GCACTTGCTTTGGGAGATCA+GGG 0.489295 7_3:-77986866 Msa1126450:CDS
TACTTAGGATGATGTTGCTG+TGG 0.498806 7_3:-77988298 Msa1126450:intron
CCAGGGTGATCGGGCTGTCG+AGG 0.499757 7_3:-77987708 Msa1126450:intron
ATACCCTGATGCCATATTTG+TGG 0.500174 7_3:-77984977 Msa1126450:CDS
TGATGCCATATTTGTGGATG+TGG 0.502868 7_3:-77984971 Msa1126450:CDS
TGGCAGGGTTTAAGAGGAAG+GGG 0.506765 7_3:-77987078 Msa1126450:intron
TTTGGGGCTTGATGTGGAGA+TGG 0.517170 7_3:-77986626 Msa1126450:CDS
AATTATCGTGTAGTAAGGTC+AGG 0.520177 7_3:+77986578 None:intergenic
AGGTCATTAAAATCTGCAAA+TGG 0.520606 7_3:+77986598 None:intergenic
CAAGGACTCAAACATCCAAA+AGG 0.523797 7_3:+77984825 None:intergenic
GTTAAGAAAACACAGTTCAG+AGG 0.526834 7_3:+77984661 None:intergenic
TTGACAAGAAAACTGGCTAC+TGG 0.527466 7_3:-77987626 Msa1126450:CDS
TCCCATCTTCGTCTCAAAAG+TGG 0.527558 7_3:-77984629 Msa1126450:three_prime_UTR
TCTTACCTGTTCTTTAACCA+AGG 0.529640 7_3:+77988890 None:intergenic
GCTGCCAAGACTGTAGTGGG+GGG 0.532385 7_3:-77988216 Msa1126450:intron
CCAAGAGTACTGCTGTGGTT+CGG 0.534633 7_3:-77985095 Msa1126450:CDS
TTGGCAGGGTTTAAGAGGAA+GGG 0.538562 7_3:-77987079 Msa1126450:intron
TTTGGGAGATCAGGGTGCTG+AGG 0.543639 7_3:-77986662 Msa1126450:CDS
TACTGCCAAGACTGCACTGG+GGG 0.545287 7_3:-77988238 Msa1126450:CDS
AGCTCTTATCTAATCCGCCC+TGG 0.547269 7_3:-77984687 Msa1126450:three_prime_UTR
ATAGGCAGAAAGAGCGCTCA+AGG 0.550175 7_3:-77987682 Msa1126450:CDS
TGATGCGCACCTCAATGCGC+AGG 0.581755 7_3:-77986813 Msa1126450:CDS
TGATGCGCACCTCAATGCGC+AGG 0.581755 7_3:-77987008 Msa1126450:CDS
TGAATACCTCCTGCGCATTG+AGG 0.582027 7_3:+77986804 None:intergenic
TGAATACCTCCTGCGCATTG+AGG 0.582027 7_3:+77986999 None:intergenic
CTGTAGCCATGCTTGCAGGA+AGG 0.584184 7_3:+77987032 None:intergenic
TTTGGGAGATCAGGGTGCTG+AGG 0.589123 7_3:-77986858 Msa1126450:CDS
GGTTACAAGAAAGCTCATGC+TGG 0.591204 7_3:-77987605 Msa1126450:CDS
ACATTGTTCAAGGCTGCCCA+AGG 0.592741 7_3:+77984887 None:intergenic
AGAACTATTATCACCATACA+AGG 0.595178 7_3:+77984807 None:intergenic
TCTTTCTAGCCCGATCACCT+TGG 0.600297 7_3:-77988907 Msa1126450:CDS
GCGTAATATGCTCTCCATAG+AGG 0.601369 7_3:+77986518 None:intergenic
TTAAGAAAACACAGTTCAGA+GGG 0.601755 7_3:+77984662 None:intergenic
ACTTACTCCTAATCTTGTAA+GGG 0.606978 7_3:+77987570 None:intergenic
TCCAATGAACATATCTCCCA+TGG 0.607469 7_3:+77984935 None:intergenic
TGGATCATGTTGATTACCAT+GGG 0.612076 7_3:-77984951 Msa1126450:CDS
ACACAGTTCAGAGGGCGCCA+GGG 0.612347 7_3:+77984670 None:intergenic
GTGGATCATGTTGATTACCA+TGG 0.635272 7_3:-77984952 Msa1126450:CDS
CATCCACAAATATGGCATCA+GGG 0.635750 7_3:+77984974 None:intergenic
CAGTTCAGAGGGCGCCAGGG+CGG 0.639291 7_3:+77984673 None:intergenic
TTCAAACTAAAGAACCAATG+AGG 0.650366 7_3:+77987828 None:intergenic
GAGAGCATATTACGCGCACT+CGG 0.654391 7_3:-77986510 Msa1126450:CDS
TGCGCACCTCAATGCGCAGG+AGG 0.656178 7_3:-77986810 Msa1126450:intron
TGCGCACCTCAATGCGCAGG+AGG 0.656178 7_3:-77987005 Msa1126450:intron
CTACTGCCAAGACTGCACTG+GGG 0.680684 7_3:-77988239 Msa1126450:CDS
AATCACCAAGAGTACTGCTG+TGG 0.685662 7_3:-77985100 Msa1126450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAACAG+TGG + chr7_3:77986196-77986215 None:intergenic 10.0%
!!! TTCTTAAAATTAAGAAATTT+TGG - chr7_3:77986370-77986389 Msa1126450:intron 10.0%
!! TAAATAAAAAAACAAAACAA+AGG + chr7_3:77986572-77986591 None:intergenic 10.0%
!! AAATAAAAAAAACAAAACAA+AGG + chr7_3:77986767-77986786 None:intergenic 10.0%
!! AAAGGAAGAAATTAAAAAAA+AGG + chr7_3:77985425-77985444 None:intergenic 15.0%
!!! TGAAAATAAAACTTTTGAAA+AGG + chr7_3:77985443-77985462 None:intergenic 15.0%
!!! ATATATTATTTTTTTTTGGC+AGG - chr7_3:77986421-77986440 Msa1126450:intron 15.0%
!!! TATATTATTTTTTTTTGGCA+GGG - chr7_3:77986422-77986441 Msa1126450:intron 15.0%
!! AATAAAAATATTCCAGAATA+AGG + chr7_3:77987069-77987088 None:intergenic 15.0%
!! TGAAAATAGGTAATTTAAAT+TGG - chr7_3:77987850-77987869 Msa1126450:intron 15.0%
!!! AAGTTTTTAAACAAAATAGT+TGG + chr7_3:77988072-77988091 None:intergenic 15.0%
!! GAATTAGAATAAGAATATCA+CGG - chr7_3:77984646-77984665 Msa1126450:three_prime_UTR 20.0%
!! AATTAGAATAAGAATATCAC+GGG - chr7_3:77984647-77984666 Msa1126450:three_prime_UTR 20.0%
!! CAAACATACAAAAAATTAGT+AGG + chr7_3:77985185-77985204 None:intergenic 20.0%
!!! TTGTTTTACTTGTTTTACTT+AGG - chr7_3:77985202-77985221 Msa1126450:intron 20.0%
!! GAATTAGAATAAGAATATCA+CGG + chr7_3:77984646-77984665 None:intergenic 20.0%
!!! TATTTTCATCAATGTTTAGA+AGG - chr7_3:77986147-77986166 Msa1126450:intron 20.0%
!!! TCTTTTCTTTATCCTTTTAT+AGG - chr7_3:77986223-77986242 Msa1126450:intron 20.0%
!! CTAAATTCTAATCCTATAAA+AGG + chr7_3:77986238-77986257 None:intergenic 20.0%
!! ATAGGATTAGAATTTAGAAA+TGG - chr7_3:77986241-77986260 Msa1126450:intron 20.0%
!! TTTATACTTGAATTAAGTTC+AGG - chr7_3:77986784-77986803 Msa1126450:intron 20.0%
!! TTATACTTGAATTAAGTTCA+GGG - chr7_3:77986785-77986804 Msa1126450:intron 20.0%
!!! AAAGTAAGTCGTTTAATTTT+TGG - chr7_3:77987032-77987051 Msa1126450:CDS 20.0%
!!! AAGTAAGTCGTTTAATTTTT+GGG - chr7_3:77987033-77987052 Msa1126450:CDS 20.0%
!! TAGAATACATTAAAAGAACA+AGG + chr7_3:77987363-77987382 None:intergenic 20.0%
!!! TGAAGAATTGGATAAAATTT+TGG - chr7_3:77987386-77987405 Msa1126450:intron 20.0%
!! ATATACAAACTAGTTAATGA+GGG - chr7_3:77987459-77987478 Msa1126450:intron 20.0%
!! AATGATTATCACTAATGAAT+GGG + chr7_3:77987528-77987547 None:intergenic 20.0%
!! TAATGATTATCACTAATGAA+TGG + chr7_3:77987529-77987548 None:intergenic 20.0%
!! AGGTAATTTAAATTGGTTAA+TGG - chr7_3:77987857-77987876 Msa1126450:intron 20.0%
!! TTATTTAACAGTGAATAATC+TGG - chr7_3:77988256-77988275 Msa1126450:CDS 20.0%
!! ACAAAAGTTTAAAAATGAAC+AGG + chr7_3:77988317-77988336 None:intergenic 20.0%
!!! TCTTGATTTCTTTTGATATT+TGG - chr7_3:77988785-77988804 Msa1126450:intron 20.0%
! ATTAGAATAAGAATATCACG+GGG - chr7_3:77984648-77984667 Msa1126450:three_prime_UTR 25.0%
! CAGTTATAGACATAGAAAAT+AGG + chr7_3:77985094-77985113 None:intergenic 25.0%
!! CTATAACTGTTTGTAGATTT+TGG - chr7_3:77985105-77985124 Msa1126450:CDS 25.0%
! TATATGTTCATTCATGTTGA+AGG - chr7_3:77985331-77985350 Msa1126450:intron 25.0%
!!! GTTGTTTTTTAAACAAATCG+TGG - chr7_3:77985395-77985414 Msa1126450:intron 25.0%
!! TTTTCCAGAATATACATATG+CGG + chr7_3:77985589-77985608 None:intergenic 25.0%
! ACCATAACCATACATATTAA+GGG + chr7_3:77986343-77986362 None:intergenic 25.0%
! TTTATACCTGAATTAAGTTC+AGG - chr7_3:77986588-77986607 Msa1126450:CDS 25.0%
! TTATACCTGAATTAAGTTCA+GGG - chr7_3:77986589-77986608 Msa1126450:CDS 25.0%
! GGATATAAATAACCTTATTC+TGG - chr7_3:77987054-77987073 Msa1126450:CDS 25.0%
! AGTGCAACATATGATTAAAA+AGG + chr7_3:77987106-77987125 None:intergenic 25.0%
!! ATATGTTGCACTTGATTTTT+GGG - chr7_3:77987114-77987133 Msa1126450:intron 25.0%
!!! TTTTAGTATTTGTCTTGTTG+CGG - chr7_3:77987227-77987246 Msa1126450:intron 25.0%
!! TGTATTCTAAGTTGAAGAAT+TGG - chr7_3:77987374-77987393 Msa1126450:intron 25.0%
!! GGAATACTTACTAAATTTTC+TGG - chr7_3:77987430-77987449 Msa1126450:intron 25.0%
! CATATACAAACTAGTTAATG+AGG - chr7_3:77987458-77987477 Msa1126450:intron 25.0%
! ATGATTATCACTAATGAATG+GGG + chr7_3:77987527-77987546 None:intergenic 25.0%
! AGTAACTATATATACTAGCA+AGG + chr7_3:77987736-77987755 None:intergenic 25.0%
! TAGTATCATGGAAAACTATT+AGG + chr7_3:77987792-77987811 None:intergenic 25.0%
! GTTTGTTCTTATGTTTGTAA+AGG - chr7_3:77987879-77987898 Msa1126450:intron 25.0%
! AAATTCTAAGTAATCATCAC+AGG + chr7_3:77987956-77987975 None:intergenic 25.0%
! TTCTTAATCACAAGTTAGAT+AGG + chr7_3:77988101-77988120 None:intergenic 25.0%
! TTCACTGTTAAATAAATTCC+AGG + chr7_3:77988251-77988270 None:intergenic 25.0%
AAAACCTAAAACACTACCAT+TGG + chr7_3:77984696-77984715 None:intergenic 30.0%
TCTGTTAATCTATCTATTGC+AGG - chr7_3:77985019-77985038 Msa1126450:intron 30.0%
! AATCTATCTATTGCAGGTTT+TGG - chr7_3:77985025-77985044 Msa1126450:intron 30.0%
!! ATATGGCTTTTTGACTGTTT+CGG - chr7_3:77985373-77985392 Msa1126450:intron 30.0%
ACCTGAGAACAAAATTTAAG+TGG - chr7_3:77985541-77985560 Msa1126450:intron 30.0%
! TCCACTTAAATTTTGTTCTC+AGG + chr7_3:77985545-77985564 None:intergenic 30.0%
AATACCGCATATGTATATTC+TGG - chr7_3:77985582-77985601 Msa1126450:intron 30.0%
ATGAAGCTTAGGTCAAAATT+TGG + chr7_3:77985631-77985650 None:intergenic 30.0%
!! AATTTTGACCTAAGCTTCAT+TGG - chr7_3:77985631-77985650 Msa1126450:intron 30.0%
TTAAAGAACCAATGAAGCTT+AGG + chr7_3:77985642-77985661 None:intergenic 30.0%
TTCAAACTAAAGAACCAATG+AGG + chr7_3:77985690-77985709 None:intergenic 30.0%
ACTTACTCCTAATCTTGTAA+GGG + chr7_3:77985948-77985967 None:intergenic 30.0%
AACTTACTCCTAATCTTGTA+AGG + chr7_3:77985949-77985968 None:intergenic 30.0%
! TTTTATGTGTTTGAGTGATG+AGG - chr7_3:77986067-77986086 Msa1126450:intron 30.0%
TTTATGTGTTTGAGTGATGA+GGG - chr7_3:77986068-77986087 Msa1126450:intron 30.0%
AAGACAAATCTTAGCATCTT+AGG - chr7_3:77986103-77986122 Msa1126450:intron 30.0%
TTTGTAGTTTGAAAGCGAAT+TGG - chr7_3:77986274-77986293 Msa1126450:intron 30.0%
TTGTAGTTTGAAAGCGAATT+GGG - chr7_3:77986275-77986294 Msa1126450:intron 30.0%
TCCCTTAATATGTATGGTTA+TGG - chr7_3:77986339-77986358 Msa1126450:intron 30.0%
CACCATAACCATACATATTA+AGG + chr7_3:77986344-77986363 None:intergenic 30.0%
TATACCTGAATTAAGTTCAG+GGG - chr7_3:77986590-77986609 Msa1126450:CDS 30.0%
!!! TGAGGGATTTGATTTTGATT+TGG - chr7_3:77986871-77986890 Msa1126450:intron 30.0%
!!! GAGGGATTTGATTTTGATTT+GGG - chr7_3:77986872-77986891 Msa1126450:intron 30.0%
!!! AGGGATTTGATTTTGATTTG+GGG - chr7_3:77986873-77986892 Msa1126450:intron 30.0%
AGGTCATTAAAATCTGCAAA+TGG + chr7_3:77986920-77986939 None:intergenic 30.0%
TTGCAAATTATCGTGTAGTA+AGG + chr7_3:77986945-77986964 None:intergenic 30.0%
! ACGATAATTTGCAAGAATTG+AGG - chr7_3:77986951-77986970 Msa1126450:intron 30.0%
! CATATGTTGCACTTGATTTT+TGG - chr7_3:77987113-77987132 Msa1126450:intron 30.0%
GACAAATACTAAAACAGAGT+TGG + chr7_3:77987221-77987240 None:intergenic 30.0%
!! AGTTTTTCAGAGTAGTATCA+TGG + chr7_3:77987804-77987823 None:intergenic 30.0%
TATGTTTGTAAAGGCCATAA+TGG - chr7_3:77987888-77987907 Msa1126450:intron 30.0%
AAAATTAGCGTGCTTGTATT+GGG + chr7_3:77987983-77988002 None:intergenic 30.0%
AAAAATTAGCGTGCTTGTAT+TGG + chr7_3:77987984-77988003 None:intergenic 30.0%
AGTACAATCAAAACTTCAAC+TGG + chr7_3:77988175-77988194 None:intergenic 30.0%
ACTTGTAAAGGAAGGAAAAA+TGG + chr7_3:77988215-77988234 None:intergenic 30.0%
TAAATAAATTCCAGGACTTC+TGG + chr7_3:77988243-77988262 None:intergenic 30.0%
TAAATGTGAAGTACGTTTAG+TGG - chr7_3:77988291-77988310 Msa1126450:CDS 30.0%
TAATTACACATAACGACACT+AGG + chr7_3:77988342-77988361 None:intergenic 30.0%
TTGAACGTTAACATTGTTCA+AGG + chr7_3:77988641-77988660 None:intergenic 30.0%
! TTGTTTCATGAATTGCCTTT+TGG - chr7_3:77988675-77988694 Msa1126450:intron 30.0%
AGAACTATTATCACCATACA+AGG + chr7_3:77988711-77988730 None:intergenic 30.0%
GCTAGAAAACTTGAGATAAA+AGG + chr7_3:77988811-77988830 None:intergenic 30.0%
TTAAGAAAACACAGTTCAGA+GGG + chr7_3:77988856-77988875 None:intergenic 30.0%
! GTTTGCATCTTTGTTTAAGT+GGG + chr7_3:77988920-77988939 None:intergenic 30.0%
! AGTTTGCATCTTTGTTTAAG+TGG + chr7_3:77988921-77988940 None:intergenic 30.0%
TGTTCTTTAACCAAGGTGAT+CGG + chr7_3:77984621-77984640 None:intergenic 35.0%
TCTTACCTGTTCTTTAACCA+AGG + chr7_3:77985790-77985809 None:intergenic 35.0%
!! TCTTCCAATGGTAGTGTTTT+AGG - chr7_3:77984689-77984708 Msa1126450:three_prime_UTR 35.0%
AGATCTGTTATTGCAGATCT+TGG - chr7_3:77984762-77984781 Msa1126450:three_prime_UTR 35.0%
AAACCAAGATCTGCAATAAC+AGG + chr7_3:77984768-77984787 None:intergenic 35.0%
TGAAAAAGCTGAGAGTGATT+TGG - chr7_3:77985253-77985272 Msa1126450:intron 35.0%
TTCTTACCTGTTCTTTAACC+AGG - chr7_3:77985789-77985808 Msa1126450:intron 35.0%
TCTTACCTGTTCTTTAACCA+GGG - chr7_3:77985790-77985809 Msa1126450:intron 35.0%
CTCAAGGAAAATCGTATCTA+AGG - chr7_3:77985849-77985868 Msa1126450:intron 35.0%
! CTTTTCTCCCTTACAAGATT+AGG - chr7_3:77985938-77985957 Msa1126450:intron 35.0%
TTATGTGTTTGAGTGATGAG+GGG - chr7_3:77986069-77986088 Msa1126450:intron 35.0%
CAAATCTTAGCATCTTAGGT+AGG - chr7_3:77986107-77986126 Msa1126450:intron 35.0%
TTAGGTAGGTTTAGTGATTG+TGG - chr7_3:77986121-77986140 Msa1126450:intron 35.0%
TATGCTCTTGTACTTACAAG+AGG - chr7_3:77986298-77986317 Msa1126450:intron 35.0%
TACATATTAAGGGACCAACT+AGG + chr7_3:77986333-77986352 None:intergenic 35.0%
AGTTGGTCCCTTAATATGTA+TGG - chr7_3:77986333-77986352 Msa1126450:intron 35.0%
!!! TTTTTTTGGCAGGGTTTAAG+AGG - chr7_3:77986431-77986450 Msa1126450:intron 35.0%
ATACCTGAATTAAGTTCAGG+GGG - chr7_3:77986591-77986610 Msa1126450:CDS 35.0%
AATTATCGTGTAGTAAGGTC+AGG + chr7_3:77986940-77986959 None:intergenic 35.0%
TATTTGTGATTGTGTCCTGT+TGG - chr7_3:77987139-77987158 Msa1126450:intron 35.0%
AAAACTGGTAAAACTCCAAC+AGG + chr7_3:77987157-77987176 None:intergenic 35.0%
GTTGGAAAGACAAACTTCTA+TGG + chr7_3:77987203-77987222 None:intergenic 35.0%
CTCATGTGTTAACTGTTAAC+AGG - chr7_3:77987409-77987428 Msa1126450:intron 35.0%
!! ACTTACTAAATTTTCTGGCG+TGG - chr7_3:77987435-77987454 Msa1126450:intron 35.0%
ATGATCCACATCCACAAATA+TGG + chr7_3:77988552-77988571 None:intergenic 35.0%
! TGGATCATGTTGATTACCAT+GGG - chr7_3:77988564-77988583 Msa1126450:intron 35.0%
GTTAAGAAAACACAGTTCAG+AGG + chr7_3:77988857-77988876 None:intergenic 35.0%
GTTCTTTAACCAAGGTGATC+GGG + chr7_3:77984620-77984639 None:intergenic 40.0%
GATCACCTTGGTTAAAGAAC+AGG - chr7_3:77984620-77984639 Msa1126450:three_prime_UTR 40.0%
ATAAGAATATCACGGGGTGA+AGG - chr7_3:77984654-77984673 Msa1126450:three_prime_UTR 40.0%
TGCTTCTTTCACTCTTCCAA+TGG - chr7_3:77984677-77984696 Msa1126450:three_prime_UTR 40.0%
GTTCCTGTTATTGCAGATCT+TGG - chr7_3:77984802-77984821 Msa1126450:three_prime_UTR 40.0%
TACTTAGGATGATGTTGCTG+TGG - chr7_3:77985217-77985236 Msa1126450:intron 40.0%
GCTTCTAAATGTAGCCTCAT+TGG - chr7_3:77985673-77985692 Msa1126450:intron 40.0%
TGTTCTTTAACCAGGGTGAT+CGG - chr7_3:77985797-77985816 Msa1126450:intron 40.0%
! CTGTCGATTGACAAGAAAAC+TGG - chr7_3:77985882-77985901 Msa1126450:intron 40.0%
TTGACAAGAAAACTGGCTAC+TGG - chr7_3:77985889-77985908 Msa1126450:intron 40.0%
! AGAGCAGTGTTGAAGAGAAA+GGG + chr7_3:77986011-77986030 None:intergenic 40.0%
! AAGAGCAGTGTTGAAGAGAA+AGG + chr7_3:77986012-77986031 None:intergenic 40.0%
GTGAATGTTGATGCCCAATT+AGG - chr7_3:77986627-77986646 Msa1126450:CDS 40.0%
GTGAATGTTGATGCCCAATT+AGG - chr7_3:77986627-77986646 Msa1126450:CDS 40.0%
!!! TTTTGATTTGGGGCTTGATG+TGG - chr7_3:77986883-77986902 Msa1126450:intron 40.0%
GGTTGCTTAAAGTCTGGTTA+TGG + chr7_3:77986979-77986998 None:intergenic 40.0%
CATAGAGGTTGCTTAAAGTC+TGG + chr7_3:77986985-77987004 None:intergenic 40.0%
CAGACTTTAAGCAACCTCTA+TGG - chr7_3:77986983-77987002 Msa1126450:intron 40.0%
AGGCTAGATGCACGTTAAAT+TGG + chr7_3:77987606-77987625 None:intergenic 40.0%
AACGTGGAAATGTAGAAGCT+GGG + chr7_3:77987641-77987660 None:intergenic 40.0%
TTTCCACGTTGAACTTGTCT+AGG - chr7_3:77987651-77987670 Msa1126450:CDS 40.0%
ATTCCTAGACAAGTTCAACG+TGG + chr7_3:77987657-77987676 None:intergenic 40.0%
ACGTTGAACTTGTCTAGGAA+TGG - chr7_3:77987656-77987675 Msa1126450:CDS 40.0%
! AGCAAAATGTTTTTCCGAGC+AGG - chr7_3:77987688-77987707 Msa1126450:CDS 40.0%
ATTATGTATCTGCACCTGCT+CGG + chr7_3:77987705-77987724 None:intergenic 40.0%
TGGCATGTACTTGTAAAGGA+AGG + chr7_3:77988223-77988242 None:intergenic 40.0%
CTTCTGGCATGTACTTGTAA+AGG + chr7_3:77988227-77988246 None:intergenic 40.0%
ATACCCTGATGCCATATTTG+TGG - chr7_3:77988538-77988557 Msa1126450:intron 40.0%
CATCCACAAATATGGCATCA+GGG + chr7_3:77988544-77988563 None:intergenic 40.0%
ACATCCACAAATATGGCATC+AGG + chr7_3:77988545-77988564 None:intergenic 40.0%
TGATGCCATATTTGTGGATG+TGG - chr7_3:77988544-77988563 Msa1126450:intron 40.0%
! GTGGATCATGTTGATTACCA+TGG - chr7_3:77988563-77988582 Msa1126450:intron 40.0%
ACCATGGGAGATATGTTCAT+TGG - chr7_3:77988579-77988598 Msa1126450:intron 40.0%
TCCAATGAACATATCTCCCA+TGG + chr7_3:77988583-77988602 None:intergenic 40.0%
CAAGGACTCAAACATCCAAA+AGG + chr7_3:77988693-77988712 None:intergenic 40.0%
TGGATGTTTGAGTCCTTGTA+TGG - chr7_3:77988695-77988714 Msa1126450:intron 40.0%
GATCACCCTGGTTAAAGAAC+AGG + chr7_3:77985798-77985817 None:intergenic 45.0%
GTTCTTTAACCAGGGTGATC+GGG - chr7_3:77985798-77985817 Msa1126450:intron 45.0%
GGTTACAAGAAAGCTCATGC+TGG - chr7_3:77985910-77985929 Msa1126450:intron 45.0%
TCAACACTGCTCTTCAACAC+TGG - chr7_3:77986018-77986037 Msa1126450:intron 45.0%
AGAGGAGTGAATGTCCTAGT+TGG - chr7_3:77986316-77986335 Msa1126450:intron 45.0%
TTTGGCAGGGTTTAAGAGGA+AGG - chr7_3:77986435-77986454 Msa1126450:intron 45.0%
TTGGCAGGGTTTAAGAGGAA+GGG - chr7_3:77986436-77986455 Msa1126450:intron 45.0%
CAAAAACCTTCCTGCAAGCA+TGG - chr7_3:77986477-77986496 Msa1126450:intron 45.0%
CCCAAAGCAAGTGCCTAATT+GGG + chr7_3:77986643-77986662 None:intergenic 45.0%
CCCAATTAGGCACTTGCTTT+GGG - chr7_3:77986640-77986659 Msa1126450:CDS 45.0%
TCCCAAAGCAAGTGCCTAAT+TGG + chr7_3:77986644-77986663 None:intergenic 45.0%
CCCAAAGCAAGTGCCTAATT+GGG + chr7_3:77986643-77986662 None:intergenic 45.0%
CCCAATTAGGCACTTGCTTT+GGG - chr7_3:77986640-77986659 Msa1126450:CDS 45.0%
TCCCAAAGCAAGTGCCTAAT+TGG + chr7_3:77986644-77986663 None:intergenic 45.0%
GCGTAATATGCTCTCCATAG+AGG + chr7_3:77987000-77987019 None:intergenic 45.0%
GTGATGCAGATGCAGAAAAC+TGG + chr7_3:77987172-77987191 None:intergenic 45.0%
GCACCTTACTACGTCTTATG+CGG - chr7_3:77987276-77987295 Msa1126450:intron 45.0%
CACCTTACTACGTCTTATGC+GGG - chr7_3:77987277-77987296 Msa1126450:intron 45.0%
ACCTTACTACGTCTTATGCG+GGG - chr7_3:77987278-77987297 Msa1126450:intron 45.0%
AAGCTGGGGAAAGTAGCATT+AGG + chr7_3:77987626-77987645 None:intergenic 45.0%
ACGTGGAAATGTAGAAGCTG+GGG + chr7_3:77987640-77987659 None:intergenic 45.0%
CAACGTGGAAATGTAGAAGC+TGG + chr7_3:77987642-77987661 None:intergenic 45.0%
ATAATGGTCAGAGTGCGCAA+CGG - chr7_3:77987904-77987923 Msa1126450:intron 45.0%
!! AATCACCAAGAGTACTGCTG+TGG - chr7_3:77988415-77988434 Msa1126450:intron 45.0%
! TGCTGTGGTTCGGAAAGTTA+TGG - chr7_3:77988430-77988449 Msa1126450:intron 45.0%
! GCTGTGGTTCGGAAAGTTAT+GGG - chr7_3:77988431-77988450 Msa1126450:intron 45.0%
TGAATGATCCAAACCAGCCT+TGG - chr7_3:77988611-77988630 Msa1126450:intron 45.0%
GAATGATCCAAACCAGCCTT+GGG - chr7_3:77988612-77988631 Msa1126450:intron 45.0%
TCCCATCTTCGTCTCAAAAG+TGG - chr7_3:77988886-77988905 Msa1126450:intron 45.0%
!!! GCCACTTTTGAGACGAAGAT+GGG + chr7_3:77988890-77988909 None:intergenic 45.0%
!!! TGCCACTTTTGAGACGAAGA+TGG + chr7_3:77988891-77988910 None:intergenic 45.0%
!! ATTTATTTAAATTCTTAATA+TGG - chr7_3:77985356-77985375 Msa1126450:intron 5.0%
!!! TAACATATATTATTTTTTTT+TGG - chr7_3:77986417-77986436 Msa1126450:intron 5.0%
!! AAATTATAATAAATGAAAAT+AGG - chr7_3:77987837-77987856 Msa1126450:intron 5.0%
! TCTTTCTAGCCCGATCACCT+TGG - chr7_3:77984608-77984627 Msa1126450:three_prime_UTR 50.0%
TTTACCCCCCACTACAGTCT+TGG + chr7_3:77985306-77985325 None:intergenic 50.0%
!! ATAGGCAGAAAGAGCGCTCA+AGG - chr7_3:77985833-77985852 Msa1126450:intron 50.0%
TGTGTTTGAGTGATGAGGGG+TGG - chr7_3:77986072-77986091 Msa1126450:intron 50.0%
TTTGAGTGATGAGGGGTGGA+GGG - chr7_3:77986076-77986095 Msa1126450:intron 50.0%
TGGCAGGGTTTAAGAGGAAG+GGG - chr7_3:77986437-77986456 Msa1126450:intron 50.0%
TCATCTGTAGCCATGCTTGC+AGG + chr7_3:77986490-77986509 None:intergenic 50.0%
TGAATACCTCCTGCGCATTG+AGG + chr7_3:77986519-77986538 None:intergenic 50.0%
CAGCCCCCTGAACTTAATTC+AGG + chr7_3:77986597-77986616 None:intergenic 50.0%
GCCCAATTAGGCACTTGCTT+TGG - chr7_3:77986639-77986658 Msa1126450:CDS 50.0%
!! GCACTTGCTTTGGGAGATCA+GGG - chr7_3:77986649-77986668 Msa1126450:CDS 50.0%
TCATCTGTAGCCATGCTTGC+AGG + chr7_3:77986490-77986509 None:intergenic 50.0%
TGAATACCTCCTGCGCATTG+AGG + chr7_3:77986519-77986538 None:intergenic 50.0%
GCCCAATTAGGCACTTGCTT+TGG - chr7_3:77986639-77986658 Msa1126450:CDS 50.0%
!! GCACTTGCTTTGGGAGATCA+GGG - chr7_3:77986649-77986668 Msa1126450:CDS 50.0%
! TTTGGGGCTTGATGTGGAGA+TGG - chr7_3:77986889-77986908 Msa1126450:intron 50.0%
! GAGAGCATATTACGCGCACT+CGG - chr7_3:77987005-77987024 Msa1126450:intron 50.0%
ACCCCGCATAAGACGTAGTA+AGG + chr7_3:77987282-77987301 None:intergenic 50.0%
GTTGCGCACTCTGACCATTA+TGG + chr7_3:77987905-77987924 None:intergenic 50.0%
TAATGGTCAGAGTGCGCAAC+GGG - chr7_3:77987905-77987924 Msa1126450:intron 50.0%
CAAGTACATGCCAGAAGTCC+TGG - chr7_3:77988230-77988249 Msa1126450:CDS 50.0%
!! CCAAGAGTACTGCTGTGGTT+CGG - chr7_3:77988420-77988439 Msa1126450:intron 50.0%
ACATTGTTCAAGGCTGCCCA+AGG + chr7_3:77988631-77988650 None:intergenic 50.0%
AGCTCTTATCTAATCCGCCC+TGG - chr7_3:77988828-77988847 Msa1126450:intron 50.0%
GCTACTGCCAAGACTGCACT+GGG - chr7_3:77985275-77985294 Msa1126450:intron 55.0%
CTACTGCCAAGACTGCACTG+GGG - chr7_3:77985276-77985295 Msa1126450:intron 55.0%
TACTGCCAAGACTGCACTGG+GGG - chr7_3:77985277-77985296 Msa1126450:intron 55.0%
ATCGGGCTGTCGAGGCTTAT+AGG - chr7_3:77985815-77985834 Msa1126450:intron 55.0%
GTTTGAGTGATGAGGGGTGG+AGG - chr7_3:77986075-77986094 Msa1126450:intron 55.0%
TTGAGTGATGAGGGGTGGAG+GGG - chr7_3:77986077-77986096 Msa1126450:intron 55.0%
CTGTAGCCATGCTTGCAGGA+AGG + chr7_3:77986486-77986505 None:intergenic 55.0%
!! GGCACTTGCTTTGGGAGATC+AGG - chr7_3:77986648-77986667 Msa1126450:CDS 55.0%
!! TTTGGGAGATCAGGGTGCTG+AGG - chr7_3:77986657-77986676 Msa1126450:CDS 55.0%
!! GGCACTTGCTTTGGGAGATC+AGG - chr7_3:77986648-77986667 Msa1126450:CDS 55.0%
!! TTTGGGAGATCAGGGTGCTG+AGG - chr7_3:77986657-77986676 Msa1126450:CDS 55.0%
!! TTGGGAGATCAGGGTGCTGA+GGG - chr7_3:77986658-77986677 Msa1126450:CDS 55.0%
CCGAACCACAGCAGTACTCT+TGG + chr7_3:77988423-77988442 None:intergenic 55.0%
GGCTACTGCCAAGACTGCAC+TGG - chr7_3:77985274-77985293 Msa1126450:intron 60.0%
GGGGCTGCCAAGACTGTAGT+GGG - chr7_3:77985296-77985315 Msa1126450:intron 60.0%
GGGCTGCCAAGACTGTAGTG+GGG - chr7_3:77985297-77985316 Msa1126450:intron 60.0%
GGCTGCCAAGACTGTAGTGG+GGG - chr7_3:77985298-77985317 Msa1126450:intron 60.0%
! GCTGCCAAGACTGTAGTGGG+GGG - chr7_3:77985299-77985318 Msa1126450:intron 60.0%
TGATGCGCACCTCAATGCGC+AGG - chr7_3:77986507-77986526 Msa1126450:CDS 60.0%
TGCTGAGGAGCCTGCAAGCA+TGG - chr7_3:77986672-77986691 Msa1126450:CDS 60.0%
TGATGCGCACCTCAATGCGC+AGG - chr7_3:77986507-77986526 Msa1126450:CDS 60.0%
! AAGGCTGCCCAAGGCTGGTT+TGG + chr7_3:77988622-77988641 None:intergenic 60.0%
TGTTCAAGGCTGCCCAAGGC+TGG + chr7_3:77988627-77988646 None:intergenic 60.0%
!! ACACAGTTCAGAGGGCGCCA+GGG + chr7_3:77988848-77988867 None:intergenic 60.0%
!! AACACAGTTCAGAGGGCGCC+AGG + chr7_3:77988849-77988868 None:intergenic 60.0%
GGGGGCTGCCAAGACTGTAG+TGG - chr7_3:77985295-77985314 Msa1126450:intron 65.0%
TGCGCACCTCAATGCGCAGG+AGG - chr7_3:77986510-77986529 Msa1126450:CDS 65.0%
TGCGCACCTCAATGCGCAGG+AGG - chr7_3:77986510-77986529 Msa1126450:CDS 65.0%
GGCAGCCCCCAGTGCAGTCT+TGG + chr7_3:77985285-77985304 None:intergenic 70.0%
CCTCGACAGCCCGATCACCC+TGG + chr7_3:77985810-77985829 None:intergenic 70.0%
CCAGGGTGATCGGGCTGTCG+AGG - chr7_3:77985807-77985826 Msa1126450:intron 70.0%
!! CAGTTCAGAGGGCGCCAGGG+CGG + chr7_3:77988845-77988864 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77984588 77988949 77984588 ID=Msa1126450;Name=Msa1126450
chr7_3 mRNA 77984588 77988949 77984588 ID=Msa1126450-mRNA-1;Parent=Msa1126450;Name=Msa1126450-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.75|0.88|1|0.62|0.77|9|336|273
chr7_3 exon 77984588 77984999 77984588 ID=Msa1126450-mRNA-1:exon:21657;Parent=Msa1126450-mRNA-1
chr7_3 exon 77985057 77985135 77985057 ID=Msa1126450-mRNA-1:exon:21656;Parent=Msa1126450-mRNA-1
chr7_3 exon 77986503 77986692 77986503 ID=Msa1126450-mRNA-1:exon:21655;Parent=Msa1126450-mRNA-1
chr7_3 exon 77986811 77986888 77986811 ID=Msa1126450-mRNA-1:exon:21654;Parent=Msa1126450-mRNA-1
chr7_3 exon 77987006 77987094 77987006 ID=Msa1126450-mRNA-1:exon:21653;Parent=Msa1126450-mRNA-1
chr7_3 exon 77987576 77987726 77987576 ID=Msa1126450-mRNA-1:exon:21652;Parent=Msa1126450-mRNA-1
chr7_3 exon 77987843 77987850 77987843 ID=Msa1126450-mRNA-1:exon:21651;Parent=Msa1126450-mRNA-1
chr7_3 exon 77988217 77988313 77988217 ID=Msa1126450-mRNA-1:exon:21650;Parent=Msa1126450-mRNA-1
chr7_3 exon 77988896 77988949 77988896 ID=Msa1126450-mRNA-1:exon:21649;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77988896 77988949 77988896 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77988217 77988313 77988217 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77987843 77987850 77987843 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77987576 77987726 77987576 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77987006 77987094 77987006 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77986811 77986888 77986811 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77986503 77986692 77986503 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77985057 77985135 77985057 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 CDS 77984924 77984999 77984924 ID=Msa1126450-mRNA-1:cds;Parent=Msa1126450-mRNA-1
chr7_3 three_prime_UTR 77984588 77984923 77984588 ID=Msa1126450-mRNA-1:three_prime_utr;Parent=Msa1126450-mRNA-1
Gene Sequence

>Msa1126450

TTTTCTTGTCAATCGACAGTTCTTTCTAGCCCGATCACCTTGGTTAAAGAACAGGATGATGTTGCTGTGGCTCGAGAGAGAGTTGAAAAAGCTGAGAGTGATTTGGCTACTGCCAAGACTGCACTGGGGGCTGCCAAGACTGTAGTGGGGGCCTCATTGGGTGATCGGGCTGTCGAGGCTTATAGGCAGAAAGAGCGCTCAAGGAAAATCGTATCTAAGGCTAGAAAGAACTGTCGATTGACAAGAAAACTGGCTACTGGTTACAAGAAAGCTCATGCTGGTCGTGCTTTTCTCCCTTACAAGATTAGGAGGTTTAAGAGGAAGGGGAAGAAGCTTTTGAATAACAAAAACCTTCCTGCAAGCATGGCTACAGATGATGCGCACCTCAATGCGCAGGAGGCACTTGCTTTGGGAGATCAGGGTGCTGAGGAGCCTGCAAGCATGGCTACAGATGATGCGCACCTCAATGCGCAGGAGGCACTTGCTTTGGGAGATCAGGGTGCTGAGGGATTTGATTTTGATTTGGGGCTTGATGTGGAGATGGAGCAGCCATTTGCAGATTTTAATGACCTGACCTTACTACACGATAATTTGCAAGAATTGAGGAACCATAACCAGACTTTAAGCAACCTCTATGGAGAGCATATTACGCGCACTCGGCGAAAAAAATTGAAGAAGAAAATCACCAAGAGTACTGCTGTGGTTCGGAAAGTTATGGGTGAACTTGATTATGATTTCGATGAAATATACCCTGATGCCATATTTGTGGATGTGGATCATGTTGATTACCATGGGAGATATGTTCATTGGATCAAGTTTTGA

Protein sequence

>Msa1126450

FSCQSTVLSSPITLVKEQDDVAVARERVEKAESDLATAKTALGAAKTVVGASLGDRAVEAYRQKERSRKIVSKARKNCRLTRKLATGYKKAHAGRAFLPYKIRRFKRKGKKLLNNKNLPASMATDDAHLNAQEALALGDQGAEEPASMATDDAHLNAQEALALGDQGAEGFDFDLGLDVEMEQPFADFNDLTLLHDNLQELRNHNQTLSNLYGEHITRTRRKKLKKKITKSTAVVRKVMGELDYDFDEIYPDAIFVDVDHVDYHGRYVHWIKF*