AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701700 MtrunA17_Chr8g0379961 95.982 672 26 1 1 672 1 671 0.0 1310
Msa0701700 MtrunA17_Chr8g0379961 80.000 220 17 1 671 863 49 268 9.07e-105 338
Msa0701700 MtrunA17_Chr8g0379941 82.021 673 111 5 6 673 11 678 0.0 1112
Msa0701700 MtrunA17_Chr8g0379941 79.091 220 19 2 671 863 52 271 3.42e-102 332
Msa0701700 MtrunA17_Chr8g0379951 77.600 125 28 0 439 563 1 125 5.71e-65 213
Msa0701700 MtrunA17_Chr4g0049731 36.364 341 197 7 50 376 18 352 1.18e-42 167
Msa0701700 MtrunA17_Chr4g0049731 35.377 212 96 4 688 863 35 241 3.83e-22 102
Msa0701700 MtrunA17_Chr2g0279671 35.780 327 198 6 50 366 27 351 5.63e-40 159
Msa0701700 MtrunA17_Chr2g0279671 35.106 188 91 2 684 841 40 226 1.37e-22 103
Msa0701700 MtrunA17_Chr8g0391891 35.106 282 164 6 69 337 35 310 2.19e-31 130
Msa0701700 MtrunA17_Chr8g0391891 35.294 204 98 4 690 864 35 233 2.67e-22 102
Msa0701700 MtrunA17_Chr5g0396561 41.935 186 106 2 69 252 35 220 9.78e-31 129
Msa0701700 MtrunA17_Chr5g0396561 35.484 186 91 1 690 846 35 220 1.42e-22 103
Msa0701700 MtrunA17_Chr7g0233071 34.932 292 166 8 69 346 40 321 3.17e-30 127
Msa0701700 MtrunA17_Chr7g0233071 35.610 205 97 3 690 864 40 239 1.74e-22 103
Msa0701700 MtrunA17_Chr8g0337041 34.177 316 184 9 69 369 40 346 9.15e-30 125
Msa0701700 MtrunA17_Chr8g0337041 34.634 205 99 3 690 864 40 239 1.27e-20 97.1
Msa0701700 MtrunA17_Chr8g0388271 41.579 190 101 3 69 252 34 219 2.03e-29 124
Msa0701700 MtrunA17_Chr8g0388271 35.610 205 97 4 690 864 34 233 9.63e-22 100
Msa0701700 MtrunA17_Chr4g0055051 34.268 321 177 10 69 369 34 340 7.31e-29 122
Msa0701700 MtrunA17_Chr4g0055051 35.122 205 98 3 690 864 34 233 2.25e-21 99.4
Msa0701700 MtrunA17_Chr8g0346971 36.364 220 124 5 69 274 34 251 6.09e-27 117
Msa0701700 MtrunA17_Chr8g0346971 33.505 194 92 3 690 846 34 227 3.68e-19 92.4
Msa0701700 MtrunA17_Chr8g0360401 29.870 231 146 7 51 269 27 253 4.79e-17 86.3
Msa0701700 MtrunA17_Chr1g0161401 31.694 183 107 5 167 337 5 181 3.39e-13 72.0
Msa0701700 MtrunA17_Chr1g0161401 38.372 86 53 0 761 846 5 90 1.07e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701700 AT1G60500.1 55.952 672 284 4 3 668 2 667 0.0 766
Msa0701700 AT1G60500.1 57.874 254 79 2 638 863 12 265 5.35e-79 270
Msa0701700 AT1G60530.1 71.724 290 74 1 18 307 19 300 2.78e-140 418
Msa0701700 AT1G60530.1 63.478 230 56 2 662 863 33 262 8.47e-83 268
Msa0701700 AT4G33650.2 30.023 443 266 11 35 452 29 452 3.42e-39 157
Msa0701700 AT4G33650.2 33.333 213 104 3 688 863 57 268 1.81e-22 103
Msa0701700 AT4G33650.1 30.023 443 266 11 35 452 29 452 3.53e-39 157
Msa0701700 AT4G33650.1 33.333 213 104 3 688 863 57 268 1.87e-22 103
Msa0701700 AT2G14120.4 33.234 337 207 7 25 346 1 334 7.80e-39 155
Msa0701700 AT2G14120.4 32.710 214 105 4 688 863 41 253 2.65e-21 100
Msa0701700 AT2G14120.2 33.234 337 207 7 25 346 1 334 1.24e-38 155
Msa0701700 AT2G14120.2 32.710 214 105 4 688 863 41 253 2.97e-21 100
Msa0701700 AT2G14120.3 33.234 337 207 7 25 346 1 334 1.30e-38 155
Msa0701700 AT2G14120.3 32.710 214 105 4 688 863 41 253 3.09e-21 100
Msa0701700 AT2G14120.1 33.234 337 207 7 25 346 1 334 1.39e-38 154
Msa0701700 AT2G14120.1 32.710 214 105 4 688 863 41 253 3.10e-21 100
Msa0701700 AT1G14830.1 34.173 278 173 5 69 337 35 311 1.18e-32 135
Msa0701700 AT1G14830.1 35.912 181 87 1 690 841 35 215 4.04e-23 105
Msa0701700 AT5G42080.2 33.226 310 195 6 69 369 34 340 1.51e-30 125
Msa0701700 AT5G42080.2 34.946 186 92 2 690 846 34 219 2.23e-21 98.6
Msa0701700 AT3G60190.1 33.910 289 179 6 69 347 40 326 3.21e-30 127
Msa0701700 AT3G60190.1 35.912 181 87 2 690 841 40 220 5.28e-22 102
Msa0701700 AT5G42080.3 33.226 310 195 6 69 369 34 340 4.88e-30 127
Msa0701700 AT5G42080.3 34.946 186 92 2 690 846 34 219 3.79e-21 99.4
Msa0701700 AT5G42080.4 33.226 310 195 6 69 369 34 340 5.76e-30 126
Msa0701700 AT5G42080.4 34.946 186 92 2 690 846 34 219 3.87e-21 99.4
Msa0701700 AT5G42080.1 33.226 310 195 6 69 369 34 340 5.76e-30 126
Msa0701700 AT5G42080.1 34.946 186 92 2 690 846 34 219 3.87e-21 99.4
Msa0701700 AT2G44590.3 32.639 288 176 7 69 345 35 315 1.33e-29 125
Msa0701700 AT2G44590.3 33.981 206 99 5 690 864 35 234 6.54e-20 95.1
Msa0701700 AT3G61760.3 40.686 204 111 5 69 268 34 231 1.33e-28 120
Msa0701700 AT3G61760.3 35.294 204 99 4 690 864 34 233 3.81e-21 98.2
Msa0701700 AT3G61760.1 40.686 204 111 5 69 268 34 231 2.08e-28 122
Msa0701700 AT3G61760.1 35.294 204 99 4 690 864 34 233 4.90e-21 99.0
Msa0701700 AT3G61760.2 40.686 204 111 5 69 268 34 231 2.19e-28 121
Msa0701700 AT3G61760.2 35.294 204 99 4 690 864 34 233 5.32e-21 98.6
Msa0701700 AT2G44590.1 29.514 288 168 8 69 345 35 298 3.01e-20 96.3
Msa0701700 AT2G44590.2 29.514 288 168 8 69 345 35 298 3.45e-20 96.3
Msa0701700 AT1G53140.1 27.731 238 156 7 44 269 36 269 2.08e-14 78.2

Find 180 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGTCTCCATCTATTTC+TGG 0.166668 4_4:-73108537 Msa0701700:CDS
CATTGTTGGTATTCCTGTTT+TGG 0.198486 4_4:-73109534 Msa0701700:CDS
GCAGTTCTTGGCATGAAATT+TGG 0.208693 4_4:+73109137 None:intergenic
TTAGTACTTGTGAGTCTATT+AGG 0.242558 4_4:-73109784 Msa0701700:CDS
CTTGAGGAAGCTAAGTTAAT+TGG 0.255531 4_4:-73109164 Msa0701700:CDS
TCACAAACTGTTGATAAAAC+TGG 0.258921 4_4:-73107399 Msa0701700:CDS
TGGAAGCTGGATTCCCTCTT+TGG 0.259636 4_4:+73110255 None:intergenic
GGGAAGTTGGATTCCCTCTT+TGG 0.273448 4_4:+73107895 None:intergenic
ATCAAGTTTATTTGCCTTTG+TGG 0.295952 4_4:+73110420 None:intergenic
TGACAATGTGTGGAGCTATT+TGG 0.298324 4_4:-73109054 Msa0701700:CDS
TCTGAGAAAGATTCTTCTAA+TGG 0.298751 4_4:-73109330 Msa0701700:CDS
AATGTTAGAAAAGCAGTTCT+TGG 0.299019 4_4:+73109125 None:intergenic
ATCTGATCATAAATGTTATC+AGG 0.304162 4_4:+73107522 None:intergenic
ATCTGATCATAAATGTTATC+AGG 0.304162 4_4:+73109881 None:intergenic
CTTCCAAACATTGTTGTTGT+TGG 0.310906 4_4:-73110238 Msa0701700:CDS
TAACATTTATGATCAGATTA+AGG 0.317964 4_4:-73107517 Msa0701700:CDS
TAACATTTATGATCAGATTA+AGG 0.317964 4_4:-73109876 Msa0701700:CDS
TGATGATGTTAACATTGGTT+TGG 0.323376 4_4:-73109666 Msa0701700:CDS
TCCACAGCCAGAGCTTGTTT+TGG 0.330947 4_4:-73107738 Msa0701700:intron
TCCACAGCCAGAGCTTGTTT+TGG 0.333742 4_4:-73110098 Msa0701700:CDS
GCCTGCCAATTTGACTTCAT+TGG 0.333846 4_4:-73109402 Msa0701700:CDS
TTCATTTCTTGCTTCTTCAT+AGG 0.344245 4_4:+73109607 None:intergenic
AGAGACTGTGGCCAACATTA+TGG 0.346194 4_4:-73108466 Msa0701700:CDS
CTTACTATGGTTGATCTTCC+AGG 0.352429 4_4:-73107573 Msa0701700:CDS
ATCTGCCAATGAAGTCAAAT+TGG 0.360580 4_4:+73109397 None:intergenic
CAATGCATTTGTTTATCATC+AGG 0.370755 4_4:+73109290 None:intergenic
TCTCCAACAACAACAATGTT+TGG 0.373812 4_4:+73110235 None:intergenic
TGCAAACTATTACCAGTTGC+AGG 0.374084 4_4:-73108997 Msa0701700:CDS
TGGAGTTCCTGATCTTACTA+TGG 0.379945 4_4:-73107586 Msa0701700:CDS
CTTACAATGGTTGATCTTCC+AGG 0.382214 4_4:-73109932 Msa0701700:CDS
GCAGCCACTGAGGAGCTTGC+TGG 0.382789 4_4:-73110019 Msa0701700:CDS
GCAGCCACTCAGGAGCTTGC+TGG 0.384321 4_4:-73107660 Msa0701700:CDS
ACTTTCTCCAACAAACCTTC+AGG 0.384947 4_4:+73109695 None:intergenic
TAAATCTCCTGAAGGTTTGC+TGG 0.387244 4_4:-73107343 Msa0701700:CDS
CTTCCCACCATTGTTGTTGT+TGG 0.388693 4_4:-73107878 Msa0701700:CDS
CTGAGAAAGATTCTTCTAAT+GGG 0.390787 4_4:-73109329 Msa0701700:CDS
TTCAAAATAATACTCTCTTC+AGG 0.391689 4_4:+73107471 None:intergenic
GATGATGTTAACATTGGTTT+GGG 0.391771 4_4:-73109665 Msa0701700:CDS
TTCCATTAGGAAATCCTTTG+TGG 0.394982 4_4:+73109199 None:intergenic
ATAACTCGTGTTCCTGTTCA+TGG 0.396246 4_4:-73107549 Msa0701700:CDS
TTGATCTTCTTAATTATCTC+AGG 0.396848 4_4:+73109464 None:intergenic
TCACAGATAGTTGATAAAAC+TGG 0.398319 4_4:-73109758 Msa0701700:CDS
AGGCAAGATTAATTGCCTAT+TGG 0.399341 4_4:-73108689 Msa0701700:CDS
ACCTTCTCCAGCAAACCTTC+AGG 0.399453 4_4:+73107336 None:intergenic
AAGATTGACAAATCCATTGT+TGG 0.402415 4_4:-73109548 Msa0701700:CDS
TTACTACTTGTGAGTCGATA+AGG 0.405010 4_4:-73107425 Msa0701700:CDS
TCCGATCAATGTGTTGAATC+AGG 0.406853 4_4:-73108724 Msa0701700:CDS
TTGAGGATAATGCTCTCTTC+AGG 0.409426 4_4:+73109830 None:intergenic
ATGGACAGGATTGGAGTCTA+TGG 0.410033 4_4:-73108447 Msa0701700:intron
GAATCAGGCCTTTGACTTGA+AGG 0.413968 4_4:-73108709 Msa0701700:CDS
GACGATGTTAACATTGGTCT+TGG 0.414913 4_4:-73107306 Msa0701700:CDS
TTGATGCTCTTGAAAATCTA+AGG 0.415233 4_4:-73110291 Msa0701700:CDS
TTGCAATCCGGAGTACTTGC+AGG 0.423704 4_4:-73108871 Msa0701700:CDS
TCAAGTACTGTGAAGCTTGA+AGG 0.424080 4_4:-73108783 Msa0701700:CDS
TATTTGTACAAGGGTACCTT+TGG 0.424963 4_4:-73110146 Msa0701700:CDS
TGTCTCTTACCAGAAATAGA+TGG 0.425419 4_4:+73108528 None:intergenic
TGATAGCAGCTAACGATTCA+AGG 0.426288 4_4:+73110188 None:intergenic
GGACTACGATCTCTTCCATT+AGG 0.434291 4_4:+73109186 None:intergenic
ACAAGCTCTGGCTGTGGAAG+TGG 0.435721 4_4:+73110103 None:intergenic
TGTGATGCAAGCTGTTGATA+TGG 0.436114 4_4:-73108913 Msa0701700:CDS
TAAATCACCTGAAGGTTTGT+TGG 0.440077 4_4:-73109702 Msa0701700:CDS
TTTGGAAAGGGTTGTTATCT+CGG 0.442091 4_4:-73109036 Msa0701700:CDS
CCTCAGCACAATCTTCCAAT+AGG 0.443004 4_4:+73108674 None:intergenic
TGGGGTGTTGGAAATCCCTT+TGG 0.443439 4_4:+73107632 None:intergenic
TGGGGTGTTGGAAATCCCTT+TGG 0.443439 4_4:+73109991 None:intergenic
TTCCACAAAGGATTTCCTAA+TGG 0.449900 4_4:-73109201 Msa0701700:CDS
ACAAGCTTCTGAGCCAAAAC+AGG 0.453897 4_4:+73109521 None:intergenic
ACATTGTCAACAAAATTAGT+TGG 0.454264 4_4:+73109068 None:intergenic
GCATTGTACTGCTCGGTTAG+TGG 0.455271 4_4:-73109273 Msa0701700:CDS
TCATTATAAGAAGATACAAT+TGG 0.458646 4_4:+73110331 None:intergenic
TACGAGTAGCAACCTGCAAC+TGG 0.461514 4_4:+73108985 None:intergenic
CAACAACAATGGTGGGAAGT+TGG 0.467309 4_4:+73107882 None:intergenic
ACAATTGGTGCAACAGATAG+AGG 0.467988 4_4:+73110346 None:intergenic
GAGCTTGCTGGCACTGCCAA+AGG 0.469671 4_4:-73107648 Msa0701700:CDS
TCTTTACTATCAAAGTCAGT+GGG 0.470875 4_4:+73107613 None:intergenic
GAGCTTGCTGGCACTGCCAA+AGG 0.478600 4_4:-73110007 Msa0701700:CDS
TGCTATAAACGCAGCCACTC+AGG 0.481328 4_4:-73107670 Msa0701700:CDS
CAACAACAATGTTTGGAAGC+TGG 0.484421 4_4:+73110242 None:intergenic
TCCTGAAGGTTTGCTGGAGA+AGG 0.484851 4_4:-73107337 Msa0701700:CDS
GTTGTTGGAGATCAATCATC+TGG 0.485196 4_4:-73110223 Msa0701700:CDS
ATTATCTCCAAAACAAGCTC+TGG 0.491062 4_4:+73107731 None:intergenic
TTATACTCCAAAACAAGCTC+TGG 0.492061 4_4:+73110091 None:intergenic
TATCAAAGTCAGTGGGGTGT+TGG 0.492352 4_4:+73107620 None:intergenic
AATCAAAGTCAGTGGGGTGT+TGG 0.493013 4_4:+73109979 None:intergenic
TTATCAGGTTGACCATGAAC+AGG 0.495576 4_4:+73107537 None:intergenic
AGCTTGCATCACATGTTGAA+TGG 0.501675 4_4:+73108923 None:intergenic
GCCAATGAAGTCAAATTGGC+AGG 0.504122 4_4:+73109401 None:intergenic
GTTGTTGGTAATCAATCGTC+TGG 0.509720 4_4:-73107863 Msa0701700:CDS
CACGGATTACACTTGCAATC+CGG 0.511102 4_4:-73108883 Msa0701700:CDS
CTGGAAGATCAACCATTGTA+AGG 0.513573 4_4:+73109933 None:intergenic
ATAACTCGTGTTCCTGTACA+TGG 0.514492 4_4:-73109908 Msa0701700:CDS
TTTGTGTGAGAAATCGCATT+GGG 0.515555 4_4:-73109637 Msa0701700:CDS
AGTGTCCTTGAGTCATTAGC+TGG 0.515596 4_4:-73107833 Msa0701700:intron
GTAAGAGACAAAGTTTAAGC+AGG 0.516534 4_4:-73108515 Msa0701700:CDS
AATGCATTTGTTTATCATCA+GGG 0.517273 4_4:+73109291 None:intergenic
TCCAATCCTGTCCATAATGT+TGG 0.522411 4_4:+73108455 None:intergenic
AGATCAACCATAGTAAGATC+AGG 0.522883 4_4:+73107579 None:intergenic
AGCTTGCTGGCACTGCCAAA+GGG 0.524521 4_4:-73107647 Msa0701700:CDS
TCCAAAACAAGCTCTGGCTG+TGG 0.524796 4_4:+73110097 None:intergenic
GGTGCAACAGATAGAGGTTG+AGG 0.525331 4_4:+73110352 None:intergenic
TAGATGCCCTTGAAAACCTC+AGG 0.528443 4_4:-73107931 Msa0701700:CDS
AGATCAACCATTGTAAGGTC+AGG 0.531215 4_4:+73109938 None:intergenic
TAATCTTGCCTTCAAGTCAA+AGG 0.534214 4_4:+73108701 None:intergenic
GCCAACATTATGGACAGGAT+TGG 0.534644 4_4:-73108456 Msa0701700:CDS
GCCTGATTCAACACATTGAT+CGG 0.536471 4_4:+73108723 None:intergenic
CAAGGGTACCTTTGGTTATG+CGG 0.538549 4_4:-73110138 Msa0701700:CDS
AAGGAGATTTGTAATGAACT+TGG 0.538785 4_4:-73108582 Msa0701700:CDS
ACTTTGATTGTGAAGAAGAA+TGG 0.539337 4_4:-73109965 Msa0701700:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 4_4:-73107505 Msa0701700:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 4_4:-73109864 Msa0701700:CDS
TTATATTCCTGCAAGTACTC+CGG 0.543933 4_4:+73108864 None:intergenic
TTTCAAGAGCATCAAGCACT+GGG 0.544310 4_4:+73110299 None:intergenic
ATCAGCTTGCCACGTGGACA+AGG 0.546387 4_4:-73110169 Msa0701700:CDS
AGCTTGCTGGCACTGCCAAA+GGG 0.547647 4_4:-73110006 Msa0701700:CDS
TCTTCACAATCAAAGTCAGT+GGG 0.547834 4_4:+73109972 None:intergenic
ATGTGTGGAGCTATTTGGAA+AGG 0.549884 4_4:-73109049 Msa0701700:CDS
AACAAATGCATTGTACTGCT+CGG 0.550416 4_4:-73109280 Msa0701700:CDS
GTGGACAAGGTATTTGTACA+AGG 0.554093 4_4:-73110156 Msa0701700:CDS
GAGATTTGTAATGAACTTGG+TGG 0.560761 4_4:-73108579 Msa0701700:CDS
TTCTTCACAATCAAAGTCAG+TGG 0.568996 4_4:+73109971 None:intergenic
ACTTTGATAGTAAAGAAGAA+TGG 0.569006 4_4:-73107606 Msa0701700:CDS
TAGTTGATAAAACTGGTTTG+AGG 0.569831 4_4:-73109751 Msa0701700:CDS
CGTCTCAACATTGCCAAAGA+GGG 0.570391 4_4:-73107908 Msa0701700:CDS
ATTACCAACAACAACAATGG+TGG 0.571180 4_4:+73107874 None:intergenic
GTACTGCTCGGTTAGTGGAG+AGG 0.571484 4_4:-73109268 Msa0701700:CDS
CTGTGGCCAACATTATGGAC+AGG 0.573065 4_4:-73108461 Msa0701700:CDS
GACATTAGCTGTTGTAACAA+AGG 0.576294 4_4:-73109729 Msa0701700:CDS
ATTACTTCAGAGAAAAGTGA+AGG 0.577066 4_4:-73109105 Msa0701700:CDS
TTATCAGGTTGACCATGTAC+AGG 0.577742 4_4:+73109896 None:intergenic
AGTGCCAGCAAGCTCCTCAG+TGG 0.578957 4_4:+73110015 None:intergenic
TTCTTTACTATCAAAGTCAG+TGG 0.579933 4_4:+73107612 None:intergenic
AACGCTTGCTGTTGTGACAA+AGG 0.585264 4_4:-73107370 Msa0701700:CDS
AGTCTCAACATTGCCAAAGA+GGG 0.586563 4_4:-73110268 Msa0701700:CDS
AGCTAATGACTCAAGGACAC+TGG 0.593764 4_4:+73107835 None:intergenic
CAGTGTTGAGAGGCTGCTTG+AGG 0.594487 4_4:-73108556 Msa0701700:CDS
GAGTCTCAACATTGCCAAAG+AGG 0.596041 4_4:-73110269 Msa0701700:CDS
GGAAGAGATCGTAGTCCTTG+AGG 0.596070 4_4:-73109180 Msa0701700:CDS
AGTGCCAGCAAGCTCCTGAG+TGG 0.596444 4_4:+73107656 None:intergenic
ATTGGAAGATTGTGCTGAGG+AGG 0.597029 4_4:-73108671 Msa0701700:CDS
GCGTCTCAACATTGCCAAAG+AGG 0.597691 4_4:-73107909 Msa0701700:CDS
CACAAACTGTTGATAAAACT+GGG 0.598278 4_4:-73107398 Msa0701700:CDS
AAGGCTGATAAATCTCCTGA+AGG 0.599516 4_4:-73107351 Msa0701700:CDS
ACTGTGAAGCTTGAAGGAGT+TGG 0.602736 4_4:-73108777 Msa0701700:CDS
TTATACCAGCTAATGACTCA+AGG 0.606048 4_4:+73107828 None:intergenic
TGTGAGAAATCGCATTGGGG+AGG 0.608396 4_4:-73109633 Msa0701700:CDS
CAAGCAAGTTTCAACTGATG+AGG 0.612510 4_4:-73107706 Msa0701700:CDS
CAAGCAAGTTTCAACTGATG+AGG 0.612510 4_4:-73110065 Msa0701700:CDS
GGTTGCTACTCGTAGAGCTG+TGG 0.612719 4_4:-73108976 Msa0701700:CDS
ACAGGAACACGAGTTATACC+TGG 0.615115 4_4:+73107555 None:intergenic
TGTGTGGAGCTATTTGGAAA+GGG 0.616400 4_4:-73109048 Msa0701700:CDS
CAATTAACTTAGCTTCCTCA+AGG 0.618556 4_4:+73109165 None:intergenic
TTACCAACAACAACAATGGT+GGG 0.619377 4_4:+73107875 None:intergenic
ACAGGAACACGAGTTATACC+TGG 0.620303 4_4:+73109914 None:intergenic
CAAAACAGGAATACCAACAA+TGG 0.623000 4_4:+73109535 None:intergenic
TGCTATAAACGCAGCCACTG+AGG 0.623567 4_4:-73110029 Msa0701700:CDS
ACAGCTGACGATGTTAACAT+TGG 0.623909 4_4:-73107312 Msa0701700:CDS
GATTAACAATGATCTGCAGA+AGG 0.625104 4_4:-73108601 Msa0701700:CDS
ACTGCTGATGATGTTAACAT+TGG 0.625783 4_4:-73109671 Msa0701700:CDS
TTGATTACCAACAACAACAA+TGG 0.627415 4_4:+73107871 None:intergenic
AAGGCTGATAAATCACCTGA+AGG 0.627415 4_4:-73109710 Msa0701700:CDS
TGGCAATGTTGAGACGCCTG+AGG 0.636315 4_4:+73107915 None:intergenic
GCTCTGGCTGTGGAAGTGGA+TGG 0.648549 4_4:+73110107 None:intergenic
TAGAGAAAGCAAAGAGACTG+TGG 0.654791 4_4:-73108478 Msa0701700:CDS
TTACTTCAGAGAAAAGTGAA+GGG 0.662697 4_4:-73109104 Msa0701700:CDS
TGTTGATATGGAGAAGCACA+CGG 0.665028 4_4:-73108901 Msa0701700:CDS
AACTTGGTGGCAGTGTTGAG+AGG 0.665158 4_4:-73108566 Msa0701700:CDS
CAGTAGCAGAAAGAACATTG+AGG 0.676780 4_4:+73109813 None:intergenic
GTTTGTGTGAGAAATCGCAT+TGG 0.677044 4_4:-73109638 Msa0701700:CDS
GTACAAATACCTTGTCCACG+TGG 0.678484 4_4:+73110160 None:intergenic
TGGTGTTCCTGACCTTACAA+TGG 0.692132 4_4:-73109945 Msa0701700:CDS
CTTTACTATCAAAGTCAGTG+GGG 0.697240 4_4:+73107614 None:intergenic
TGCTGAAAGTGATTCCACAA+AGG 0.697479 4_4:-73109213 Msa0701700:CDS
TGGACAAGGTATTTGTACAA+GGG 0.698939 4_4:-73110155 Msa0701700:CDS
GCTGCTATCAGCTTGCCACG+TGG 0.701846 4_4:-73110175 Msa0701700:CDS
GTTGATCATCAACATCAACA+TGG 0.706155 4_4:+73110374 None:intergenic
TGGAAACAAGAGTTCCACAA+AGG 0.707464 4_4:-73110434 Msa0701700:CDS
CCTATTGGAAGATTGTGCTG+AGG 0.716472 4_4:-73108674 Msa0701700:CDS
TTGTGTGAGAAATCGCATTG+GGG 0.740526 4_4:-73109636 Msa0701700:CDS
ACTGGTAATAGTTTGCAGAG+TGG 0.741343 4_4:+73109003 None:intergenic
CTTCACAATCAAAGTCAGTG+GGG 0.747498 4_4:+73109973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACAAAATATTTTTGATT+TGG + chr4_4:73109637-73109656 None:intergenic 10.0%
!! ATTAATGAATAGATAAAACA+AGG + chr4_4:73109580-73109599 None:intergenic 15.0%
!! TCATTATAAGAAGATACAAT+TGG + chr4_4:73107407-73107426 None:intergenic 20.0%
!! TAACATTTATGATCAGATTA+AGG - chr4_4:73107859-73107878 Msa0701700:CDS 20.0%
!!! AGCATTTTTGAAAAAAGTTT+TGG - chr4_4:73108915-73108934 Msa0701700:CDS 20.0%
!! AGTTTAATTACCTTAATGTA+TGG - chr4_4:73109514-73109533 Msa0701700:CDS 20.0%
!!! CTATTCATTAATTCTTGTTT+AGG - chr4_4:73109588-73109607 Msa0701700:CDS 20.0%
!! TAACATTTATGATCAGATTA+AGG - chr4_4:73107859-73107878 Msa0701700:CDS 20.0%
! ATCTGATCATAAATGTTATC+AGG + chr4_4:73107857-73107876 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG - chr4_4:73107871-73107890 Msa0701700:CDS 25.0%
! TTGATCTTCTTAATTATCTC+AGG + chr4_4:73108274-73108293 None:intergenic 25.0%
! AATGCATTTGTTTATCATCA+GGG + chr4_4:73108447-73108466 None:intergenic 25.0%
! ACATTGTCAACAAAATTAGT+TGG + chr4_4:73108670-73108689 None:intergenic 25.0%
!! ATGTCTTTTTGTTAATCAGT+TGG - chr4_4:73109387-73109406 Msa0701700:CDS 25.0%
! AACTTGAACAAACAAAAAAC+AGG + chr4_4:73109434-73109453 None:intergenic 25.0%
! GACAATAAAACCATACATTA+AGG + chr4_4:73109527-73109546 None:intergenic 25.0%
!! ACTTTGATAGTAAAGAAGAA+TGG - chr4_4:73110129-73110148 Msa0701700:CDS 25.0%
! ATCTGATCATAAATGTTATC+AGG + chr4_4:73107857-73107876 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG - chr4_4:73107871-73107890 Msa0701700:CDS 25.0%
! TTCAAAATAATACTCTCTTC+AGG + chr4_4:73110267-73110286 None:intergenic 25.0%
ATCAAGTTTATTTGCCTTTG+TGG + chr4_4:73107318-73107337 None:intergenic 30.0%
TTGATGCTCTTGAAAATCTA+AGG - chr4_4:73107444-73107463 Msa0701700:CDS 30.0%
ACTTTGATTGTGAAGAAGAA+TGG - chr4_4:73107770-73107789 Msa0701700:intron 30.0%
TTAGTACTTGTGAGTCTATT+AGG - chr4_4:73107951-73107970 Msa0701700:intron 30.0%
!! TCACAGATAGTTGATAAAAC+TGG - chr4_4:73107977-73107996 Msa0701700:intron 30.0%
!! TAGTTGATAAAACTGGTTTG+AGG - chr4_4:73107984-73108003 Msa0701700:intron 30.0%
! TGATGATGTTAACATTGGTT+TGG - chr4_4:73108069-73108088 Msa0701700:intron 30.0%
!! GATGATGTTAACATTGGTTT+GGG - chr4_4:73108070-73108089 Msa0701700:intron 30.0%
TTCATTTCTTGCTTCTTCAT+AGG + chr4_4:73108131-73108150 None:intergenic 30.0%
AAGATTGACAAATCCATTGT+TGG - chr4_4:73108187-73108206 Msa0701700:intron 30.0%
TCTGAGAAAGATTCTTCTAA+TGG - chr4_4:73108405-73108424 Msa0701700:intron 30.0%
CTGAGAAAGATTCTTCTAAT+GGG - chr4_4:73108406-73108425 Msa0701700:intron 30.0%
CAATGCATTTGTTTATCATC+AGG + chr4_4:73108448-73108467 None:intergenic 30.0%
AATGTTAGAAAAGCAGTTCT+TGG + chr4_4:73108613-73108632 None:intergenic 30.0%
ATTACTTCAGAGAAAAGTGA+AGG - chr4_4:73108630-73108649 Msa0701700:CDS 30.0%
TTACTTCAGAGAAAAGTGAA+GGG - chr4_4:73108631-73108650 Msa0701700:CDS 30.0%
! CTAATTTTGTTGACAATGTG+TGG - chr4_4:73108671-73108690 Msa0701700:CDS 30.0%
AAGGAGATTTGTAATGAACT+TGG - chr4_4:73109153-73109172 Msa0701700:CDS 30.0%
GAATTGCTTGATGTTTCTTA+AGG - chr4_4:73109323-73109342 Msa0701700:CDS 30.0%
TTTGTTTGGATCTATTATGC+AGG - chr4_4:73109353-73109372 Msa0701700:CDS 30.0%
! TGGAACTTTTATTAGTATCC+AGG - chr4_4:73109407-73109426 Msa0701700:CDS 30.0%
TTGATTACCAACAACAACAA+TGG + chr4_4:73109867-73109886 None:intergenic 30.0%
TCTTTACTATCAAAGTCAGT+GGG + chr4_4:73110125-73110144 None:intergenic 30.0%
TTCTTTACTATCAAAGTCAG+TGG + chr4_4:73110126-73110145 None:intergenic 30.0%
! TCACAAACTGTTGATAAAAC+TGG - chr4_4:73110336-73110355 Msa0701700:CDS 30.0%
! CACAAACTGTTGATAAAACT+GGG - chr4_4:73110337-73110356 Msa0701700:CDS 30.0%
GTTGATCATCAACATCAACA+TGG + chr4_4:73107364-73107383 None:intergenic 35.0%
! CTTCCAAACATTGTTGTTGT+TGG - chr4_4:73107497-73107516 Msa0701700:CDS 35.0%
TCTCCAACAACAACAATGTT+TGG + chr4_4:73107503-73107522 None:intergenic 35.0%
! TGGACAAGGTATTTGTACAA+GGG - chr4_4:73107580-73107599 Msa0701700:CDS 35.0%
!! TATTTGTACAAGGGTACCTT+TGG - chr4_4:73107589-73107608 Msa0701700:CDS 35.0%
TTATACTCCAAAACAAGCTC+TGG + chr4_4:73107647-73107666 None:intergenic 35.0%
!!! GAGCTTGTTTTGGAGTATAA+TGG - chr4_4:73107647-73107666 Msa0701700:CDS 35.0%
TCTTCACAATCAAAGTCAGT+GGG + chr4_4:73107766-73107785 None:intergenic 35.0%
TTCTTCACAATCAAAGTCAG+TGG + chr4_4:73107767-73107786 None:intergenic 35.0%
GACATTAGCTGTTGTAACAA+AGG - chr4_4:73108006-73108025 Msa0701700:intron 35.0%
TAAATCACCTGAAGGTTTGT+TGG - chr4_4:73108033-73108052 Msa0701700:intron 35.0%
! ACTGCTGATGATGTTAACAT+TGG - chr4_4:73108064-73108083 Msa0701700:intron 35.0%
TTTGTGTGAGAAATCGCATT+GGG - chr4_4:73108098-73108117 Msa0701700:intron 35.0%
CAAAACAGGAATACCAACAA+TGG + chr4_4:73108203-73108222 None:intergenic 35.0%
! CATTGTTGGTATTCCTGTTT+TGG - chr4_4:73108201-73108220 Msa0701700:intron 35.0%
ATCTGCCAATGAAGTCAAAT+TGG + chr4_4:73108341-73108360 None:intergenic 35.0%
AACAAATGCATTGTACTGCT+CGG - chr4_4:73108455-73108474 Msa0701700:CDS 35.0%
TTCCACAAAGGATTTCCTAA+TGG - chr4_4:73108534-73108553 Msa0701700:CDS 35.0%
TTCCATTAGGAAATCCTTTG+TGG + chr4_4:73108539-73108558 None:intergenic 35.0%
CAATTAACTTAGCTTCCTCA+AGG + chr4_4:73108573-73108592 None:intergenic 35.0%
CTTGAGGAAGCTAAGTTAAT+TGG - chr4_4:73108571-73108590 Msa0701700:CDS 35.0%
TTTGGAAAGGGTTGTTATCT+CGG - chr4_4:73108699-73108718 Msa0701700:CDS 35.0%
TTATATTCCTGCAAGTACTC+CGG + chr4_4:73108874-73108893 None:intergenic 35.0%
TAATCTTGCCTTCAAGTCAA+AGG + chr4_4:73109037-73109056 None:intergenic 35.0%
AGGCAAGATTAATTGCCTAT+TGG - chr4_4:73109046-73109065 Msa0701700:CDS 35.0%
GATTAACAATGATCTGCAGA+AGG - chr4_4:73109134-73109153 Msa0701700:CDS 35.0%
GAGATTTGTAATGAACTTGG+TGG - chr4_4:73109156-73109175 Msa0701700:CDS 35.0%
TGTCTCTTACCAGAAATAGA+TGG + chr4_4:73109210-73109229 None:intergenic 35.0%
GTAAGAGACAAAGTTTAAGC+AGG - chr4_4:73109220-73109239 Msa0701700:CDS 35.0%
GCTTGATGTTTCTTAAGGAT+TGG - chr4_4:73109328-73109347 Msa0701700:CDS 35.0%
!! CTTAAGGATTGGTCTTTGTT+TGG - chr4_4:73109339-73109358 Msa0701700:CDS 35.0%
AACAAACAAAAAACAGGACC+TGG + chr4_4:73109428-73109447 None:intergenic 35.0%
TTACCAACAACAACAATGGT+GGG + chr4_4:73109863-73109882 None:intergenic 35.0%
ATTACCAACAACAACAATGG+TGG + chr4_4:73109864-73109883 None:intergenic 35.0%
TTATACCAGCTAATGACTCA+AGG + chr4_4:73109910-73109929 None:intergenic 35.0%
! TTTTGCAGCCTCATAAACAA+TGG + chr4_4:73109968-73109987 None:intergenic 35.0%
ATTATCTCCAAAACAAGCTC+TGG + chr4_4:73110007-73110026 None:intergenic 35.0%
!!! AGAGCTTGTTTTGGAGATAA+TGG - chr4_4:73110006-73110025 Msa0701700:CDS 35.0%
CTTTACTATCAAAGTCAGTG+GGG + chr4_4:73110124-73110143 None:intergenic 35.0%
AGATCAACCATAGTAAGATC+AGG + chr4_4:73110159-73110178 None:intergenic 35.0%
TTACTACTTGTGAGTCGATA+AGG - chr4_4:73110310-73110329 Msa0701700:CDS 35.0%
TGGAAACAAGAGTTCCACAA+AGG - chr4_4:73107301-73107320 Msa0701700:CDS 40.0%
ACAATTGGTGCAACAGATAG+AGG + chr4_4:73107392-73107411 None:intergenic 40.0%
!! TTTCAAGAGCATCAAGCACT+GGG + chr4_4:73107439-73107458 None:intergenic 40.0%
!!! TTTTCAAGAGCATCAAGCAC+TGG + chr4_4:73107440-73107459 None:intergenic 40.0%
AGTCTCAACATTGCCAAAGA+GGG - chr4_4:73107467-73107486 Msa0701700:CDS 40.0%
CAACAACAATGTTTGGAAGC+TGG + chr4_4:73107496-73107515 None:intergenic 40.0%
GTTGTTGGAGATCAATCATC+TGG - chr4_4:73107512-73107531 Msa0701700:CDS 40.0%
TGATAGCAGCTAACGATTCA+AGG + chr4_4:73107550-73107569 None:intergenic 40.0%
! GTGGACAAGGTATTTGTACA+AGG - chr4_4:73107579-73107598 Msa0701700:CDS 40.0%
CAAGCAAGTTTCAACTGATG+AGG - chr4_4:73107670-73107689 Msa0701700:CDS 40.0%
CTTCACAATCAAAGTCAGTG+GGG + chr4_4:73107765-73107784 None:intergenic 40.0%
AGATCAACCATTGTAAGGTC+AGG + chr4_4:73107800-73107819 None:intergenic 40.0%
CTGGAAGATCAACCATTGTA+AGG + chr4_4:73107805-73107824 None:intergenic 40.0%
CTTACAATGGTTGATCTTCC+AGG - chr4_4:73107803-73107822 Msa0701700:intron 40.0%
ATAACTCGTGTTCCTGTACA+TGG - chr4_4:73107827-73107846 Msa0701700:intron 40.0%
!! TTATCAGGTTGACCATGTAC+AGG + chr4_4:73107842-73107861 None:intergenic 40.0%
TTGAGGATAATGCTCTCTTC+AGG + chr4_4:73107908-73107927 None:intergenic 40.0%
CAGTAGCAGAAAGAACATTG+AGG + chr4_4:73107925-73107944 None:intergenic 40.0%
AAGGCTGATAAATCACCTGA+AGG - chr4_4:73108025-73108044 Msa0701700:intron 40.0%
ACTTTCTCCAACAAACCTTC+AGG + chr4_4:73108043-73108062 None:intergenic 40.0%
GTTTGTGTGAGAAATCGCAT+TGG - chr4_4:73108097-73108116 Msa0701700:intron 40.0%
TTGTGTGAGAAATCGCATTG+GGG - chr4_4:73108099-73108118 Msa0701700:intron 40.0%
TGCTGAAAGTGATTCCACAA+AGG - chr4_4:73108522-73108541 Msa0701700:CDS 40.0%
GCAGTTCTTGGCATGAAATT+TGG + chr4_4:73108601-73108620 None:intergenic 40.0%
TGACAATGTGTGGAGCTATT+TGG - chr4_4:73108681-73108700 Msa0701700:CDS 40.0%
ATGTGTGGAGCTATTTGGAA+AGG - chr4_4:73108686-73108705 Msa0701700:CDS 40.0%
TGTGTGGAGCTATTTGGAAA+GGG - chr4_4:73108687-73108706 Msa0701700:CDS 40.0%
! ACTGGTAATAGTTTGCAGAG+TGG + chr4_4:73108735-73108754 None:intergenic 40.0%
TGCAAACTATTACCAGTTGC+AGG - chr4_4:73108738-73108757 Msa0701700:CDS 40.0%
AGCTTGCATCACATGTTGAA+TGG + chr4_4:73108815-73108834 None:intergenic 40.0%
TGTGATGCAAGCTGTTGATA+TGG - chr4_4:73108822-73108841 Msa0701700:CDS 40.0%
! TGTTGATATGGAGAAGCACA+CGG - chr4_4:73108834-73108853 Msa0701700:CDS 40.0%
! TCAAGTACTGTGAAGCTTGA+AGG - chr4_4:73108952-73108971 Msa0701700:CDS 40.0%
TCCGATCAATGTGTTGAATC+AGG - chr4_4:73109011-73109030 Msa0701700:CDS 40.0%
GCCTGATTCAACACATTGAT+CGG + chr4_4:73109015-73109034 None:intergenic 40.0%
TAGAGAAAGCAAAGAGACTG+TGG - chr4_4:73109257-73109276 Msa0701700:CDS 40.0%
TCCAATCCTGTCCATAATGT+TGG + chr4_4:73109283-73109302 None:intergenic 40.0%
GTTTGGATCTATTATGCAGG+CGG - chr4_4:73109356-73109375 Msa0701700:CDS 40.0%
TCACAAAATGCAACAACGAC+AGG + chr4_4:73109465-73109484 None:intergenic 40.0%
!!! TTTTCAAGGGCATCTAGAAC+AGG + chr4_4:73109800-73109819 None:intergenic 40.0%
!! GTTGTTGGTAATCAATCGTC+TGG - chr4_4:73109872-73109891 Msa0701700:CDS 40.0%
!! CAAGGGTACCATTGTTTATG+AGG - chr4_4:73109957-73109976 Msa0701700:CDS 40.0%
CAAGCAAGTTTCAACTGATG+AGG - chr4_4:73107670-73107689 Msa0701700:CDS 40.0%
TGGAGTTCCTGATCTTACTA+TGG - chr4_4:73110149-73110168 Msa0701700:CDS 40.0%
CTTACTATGGTTGATCTTCC+AGG - chr4_4:73110162-73110181 Msa0701700:CDS 40.0%
ATAACTCGTGTTCCTGTTCA+TGG - chr4_4:73110186-73110205 Msa0701700:CDS 40.0%
!! TTATCAGGTTGACCATGAAC+AGG + chr4_4:73110201-73110220 None:intergenic 40.0%
AAGGCTGATAAATCTCCTGA+AGG - chr4_4:73110384-73110403 Msa0701700:CDS 40.0%
TAAATCTCCTGAAGGTTTGC+TGG - chr4_4:73110392-73110411 Msa0701700:CDS 40.0%
ACAGCTGACGATGTTAACAT+TGG - chr4_4:73110423-73110442 Msa0701700:CDS 40.0%
! GACGATGTTAACATTGGTCT+TGG - chr4_4:73110429-73110448 Msa0701700:CDS 40.0%
GAGTCTCAACATTGCCAAAG+AGG - chr4_4:73107466-73107485 Msa0701700:CDS 45.0%
GTACAAATACCTTGTCCACG+TGG + chr4_4:73107578-73107597 None:intergenic 45.0%
!! CAAGGGTACCTTTGGTTATG+CGG - chr4_4:73107597-73107616 Msa0701700:CDS 45.0%
! TTTTGCAGCCGCATAACCAA+AGG + chr4_4:73107608-73107627 None:intergenic 45.0%
AATCAAAGTCAGTGGGGTGT+TGG + chr4_4:73107759-73107778 None:intergenic 45.0%
TGGTGTTCCTGACCTTACAA+TGG - chr4_4:73107790-73107809 Msa0701700:intron 45.0%
ACAGGAACACGAGTTATACC+TGG + chr4_4:73107824-73107843 None:intergenic 45.0%
ACAAGCTTCTGAGCCAAAAC+AGG + chr4_4:73108217-73108236 None:intergenic 45.0%
! GCCTGCCAATTTGACTTCAT+TGG - chr4_4:73108333-73108352 Msa0701700:intron 45.0%
GCCAATGAAGTCAAATTGGC+AGG + chr4_4:73108337-73108356 None:intergenic 45.0%
GGACTACGATCTCTTCCATT+AGG + chr4_4:73108552-73108571 None:intergenic 45.0%
! CACGGATTACACTTGCAATC+CGG - chr4_4:73108852-73108871 Msa0701700:CDS 45.0%
ACTGTGAAGCTTGAAGGAGT+TGG - chr4_4:73108958-73108977 Msa0701700:CDS 45.0%
!! GAATCAGGCCTTTGACTTGA+AGG - chr4_4:73109026-73109045 Msa0701700:CDS 45.0%
CCTCAGCACAATCTTCCAAT+AGG + chr4_4:73109064-73109083 None:intergenic 45.0%
CCTATTGGAAGATTGTGCTG+AGG - chr4_4:73109061-73109080 Msa0701700:CDS 45.0%
ATTGGAAGATTGTGCTGAGG+AGG - chr4_4:73109064-73109083 Msa0701700:CDS 45.0%
GAGGAGTCTCCATCTATTTC+TGG - chr4_4:73109198-73109217 Msa0701700:CDS 45.0%
AGAGACTGTGGCCAACATTA+TGG - chr4_4:73109269-73109288 Msa0701700:CDS 45.0%
GCCAACATTATGGACAGGAT+TGG - chr4_4:73109279-73109298 Msa0701700:CDS 45.0%
ATGGACAGGATTGGAGTCTA+TGG - chr4_4:73109288-73109307 Msa0701700:CDS 45.0%
TAGATGCCCTTGAAAACCTC+AGG - chr4_4:73109804-73109823 Msa0701700:CDS 45.0%
CGTCTCAACATTGCCAAAGA+GGG - chr4_4:73109827-73109846 Msa0701700:CDS 45.0%
! CAACAACAATGGTGGGAAGT+TGG + chr4_4:73109856-73109875 None:intergenic 45.0%
! CTTCCCACCATTGTTGTTGT+TGG - chr4_4:73109857-73109876 Msa0701700:CDS 45.0%
AGCTAATGACTCAAGGACAC+TGG + chr4_4:73109903-73109922 None:intergenic 45.0%
AGTGTCCTTGAGTCATTAGC+TGG - chr4_4:73109902-73109921 Msa0701700:CDS 45.0%
TGGCCAAGGAATTTGCACAA+GGG - chr4_4:73109940-73109959 Msa0701700:CDS 45.0%
GTACCCTTGTGCAAATTCCT+TGG + chr4_4:73109946-73109965 None:intergenic 45.0%
TATCAAAGTCAGTGGGGTGT+TGG + chr4_4:73110118-73110137 None:intergenic 45.0%
ACAGGAACACGAGTTATACC+TGG + chr4_4:73107824-73107843 None:intergenic 45.0%
!! AACGCTTGCTGTTGTGACAA+AGG - chr4_4:73110365-73110384 Msa0701700:CDS 45.0%
GGTGCAACAGATAGAGGTTG+AGG + chr4_4:73107386-73107405 None:intergenic 50.0%
TGGAAGCTGGATTCCCTCTT+TGG + chr4_4:73107483-73107502 None:intergenic 50.0%
!! TCCACAGCCAGAGCTTGTTT+TGG - chr4_4:73107637-73107656 Msa0701700:CDS 50.0%
! TCCAAAACAAGCTCTGGCTG+TGG + chr4_4:73107641-73107660 None:intergenic 50.0%
TGCTATAAACGCAGCCACTG+AGG - chr4_4:73107706-73107725 Msa0701700:CDS 50.0%
!! TGGGGTGTTGGAAATCCCTT+TGG + chr4_4:73107747-73107766 None:intergenic 50.0%
TGTGAGAAATCGCATTGGGG+AGG - chr4_4:73108102-73108121 Msa0701700:intron 50.0%
GCATTGTACTGCTCGGTTAG+TGG - chr4_4:73108462-73108481 Msa0701700:CDS 50.0%
GGAAGAGATCGTAGTCCTTG+AGG - chr4_4:73108555-73108574 Msa0701700:CDS 50.0%
TACGAGTAGCAACCTGCAAC+TGG + chr4_4:73108753-73108772 None:intergenic 50.0%
! TTGCAATCCGGAGTACTTGC+AGG - chr4_4:73108864-73108883 Msa0701700:CDS 50.0%
! AACTTGGTGGCAGTGTTGAG+AGG - chr4_4:73109169-73109188 Msa0701700:CDS 50.0%
CTGTGGCCAACATTATGGAC+AGG - chr4_4:73109274-73109293 Msa0701700:CDS 50.0%
! GAGACGCCTGAGGTTTTCAA+GGG + chr4_4:73109813-73109832 None:intergenic 50.0%
! TGAGACGCCTGAGGTTTTCA+AGG + chr4_4:73109814-73109833 None:intergenic 50.0%
GCGTCTCAACATTGCCAAAG+AGG - chr4_4:73109826-73109845 Msa0701700:CDS 50.0%
GGGAAGTTGGATTCCCTCTT+TGG + chr4_4:73109843-73109862 None:intergenic 50.0%
GCTGGTATAAGTTTGCCACG+TGG - chr4_4:73109920-73109939 Msa0701700:CDS 50.0%
ATAAGTTTGCCACGTGGCCA+AGG - chr4_4:73109926-73109945 Msa0701700:CDS 50.0%
GTGGCCAAGGAATTTGCACA+AGG - chr4_4:73109939-73109958 Msa0701700:CDS 50.0%
!! TCCACAGCCAGAGCTTGTTT+TGG - chr4_4:73107637-73107656 Msa0701700:CDS 50.0%
! TCCAAAACAAGCTCTGGCTG+TGG + chr4_4:73107641-73107660 None:intergenic 50.0%
TGCTATAAACGCAGCCACTC+AGG - chr4_4:73110065-73110084 Msa0701700:CDS 50.0%
!! TGGGGTGTTGGAAATCCCTT+TGG + chr4_4:73107747-73107766 None:intergenic 50.0%
!! TCCTGAAGGTTTGCTGGAGA+AGG - chr4_4:73110398-73110417 Msa0701700:CDS 50.0%
ACCTTCTCCAGCAAACCTTC+AGG + chr4_4:73110402-73110421 None:intergenic 50.0%
ATCAGCTTGCCACGTGGACA+AGG - chr4_4:73107566-73107585 Msa0701700:CDS 55.0%
! ACAAGCTCTGGCTGTGGAAG+TGG + chr4_4:73107635-73107654 None:intergenic 55.0%
!! AGCTTGCTGGCACTGCCAAA+GGG - chr4_4:73107729-73107748 Msa0701700:CDS 55.0%
GTACTGCTCGGTTAGTGGAG+AGG - chr4_4:73108467-73108486 Msa0701700:CDS 55.0%
GGTTGCTACTCGTAGAGCTG+TGG - chr4_4:73108759-73108778 Msa0701700:CDS 55.0%
! CAGTGTTGAGAGGCTGCTTG+AGG - chr4_4:73109179-73109198 Msa0701700:CDS 55.0%
TGGCAATGTTGAGACGCCTG+AGG + chr4_4:73109823-73109842 None:intergenic 55.0%
GTGCAAATTCCTTGGCCACG+TGG + chr4_4:73109938-73109957 None:intergenic 55.0%
! ACAAGCTCTGGCTGTGGAAG+TGG + chr4_4:73107635-73107654 None:intergenic 55.0%
!! AGCTTGCTGGCACTGCCAAA+GGG - chr4_4:73107729-73107748 Msa0701700:CDS 55.0%
GCTGCTATCAGCTTGCCACG+TGG - chr4_4:73107560-73107579 Msa0701700:CDS 60.0%
GCTCTGGCTGTGGAAGTGGA+TGG + chr4_4:73107631-73107650 None:intergenic 60.0%
AGTGCCAGCAAGCTCCTCAG+TGG + chr4_4:73107723-73107742 None:intergenic 60.0%
!! GAGCTTGCTGGCACTGCCAA+AGG - chr4_4:73107728-73107747 Msa0701700:CDS 60.0%
GCTCTGGCTGTGGAAGTGGA+TGG + chr4_4:73107631-73107650 None:intergenic 60.0%
AGTGCCAGCAAGCTCCTGAG+TGG + chr4_4:73110082-73110101 None:intergenic 60.0%
!! GAGCTTGCTGGCACTGCCAA+AGG - chr4_4:73107728-73107747 Msa0701700:CDS 60.0%
GCAGCCACTGAGGAGCTTGC+TGG - chr4_4:73107716-73107735 Msa0701700:CDS 65.0%
GCAGCCACTCAGGAGCTTGC+TGG - chr4_4:73110075-73110094 Msa0701700:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 73107293 73110464 73107293 ID=Msa0701700;Name=Msa0701700
chr4_4 mRNA 73107293 73110464 73107293 ID=Msa0701700-mRNA-1;Parent=Msa0701700;Name=Msa0701700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|864
chr4_4 exon 73108448 73110464 73108448 ID=Msa0701700-mRNA-1:exon:22412;Parent=Msa0701700-mRNA-1
chr4_4 exon 73107834 73107950 73107834 ID=Msa0701700-mRNA-1:exon:22411;Parent=Msa0701700-mRNA-1
chr4_4 exon 73107293 73107753 73107293 ID=Msa0701700-mRNA-1:exon:22410;Parent=Msa0701700-mRNA-1
chr4_4 CDS 73108448 73110464 73108448 ID=Msa0701700-mRNA-1:cds;Parent=Msa0701700-mRNA-1
chr4_4 CDS 73107834 73107950 73107834 ID=Msa0701700-mRNA-1:cds;Parent=Msa0701700-mRNA-1
chr4_4 CDS 73107293 73107753 73107293 ID=Msa0701700-mRNA-1:cds;Parent=Msa0701700-mRNA-1
Gene Sequence

>Msa0701700

ATGACAATTGGAAACAAGAGTTCCACAAAGGCAAATAAACTTGATGAATCATCATCACTTGCATTAGTCCATGTTGATGTTGATGATCAACCTCAACCTCTATCTGTTGCACCAATTGTATCTTCTTATAATGAGAAGATACGCCCAGTGCTTGATGCTCTTGAAAATCTAAGGAGTCTCAACATTGCCAAAGAGGGAATCCAGCTTCCAAACATTGTTGTTGTTGGAGATCAATCATCTGGAAAGTCTAGTGTCCTTGAATCGTTAGCTGCTATCAGCTTGCCACGTGGACAAGGTATTTGTACAAGGGTACCTTTGGTTATGCGGCTGCAAAACCATCCACTTCCACAGCCAGAGCTTGTTTTGGAGTATAATGGCAAGCAAGTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAACGCAGCCACTGAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATTGTGAAGAAGAATGGTGTTCCTGACCTTACAATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTACATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACTCCTGAAGAGAGCATTATCCTCAATGTTCTTTCTGCTACTGTCGATTTTAGTACTTGTGAGTCTATTAGGATGTCACAGATAGTTGATAAAACTGGTTTGAGGACATTAGCTGTTGTAACAAAGGCTGATAAATCACCTGAAGGTTTGTTGGAGAAAGTAACTGCTGATGATGTTAACATTGGTTTGGGCTATGTTTGTGTGAGAAATCGCATTGGGGAGGAATCCTATGAAGAAGCAAGAAATGAAGAACAGAAGTTGTTTGAGTCTCACTCACTTCTTTCTAAGATTGACAAATCCATTGTTGGTATTCCTGTTTTGGCTCAGAAGCTTGTTAATGTGCAAGCTATGATTATTTCAAAAACTTTGCCTGAGATAATTAAGAAGATCAATGAGAAGCTTTATAATAGTGTACATGAGTTGAAGACTTTGCCTGCCAATTTGACTTCATTGGCAGATGCTATGTCTGCTTTTCTGCATATTGTTTCTCTGTCAAGAGATTCTCTGAGAAAGATTCTTCTAATGGGAGAATTTGAAGAATACCCTGATGATAAACAAATGCATTGTACTGCTCGGTTAGTGGAGAGGTTGAATTCATATGCAAGTGATCTTCAAAACTGTGCTGAAAGTGATTCCACAAAGGATTTCCTAATGGAAGAGATCGTAGTCCTTGAGGAAGCTAAGTTAATTGGTCTTCCAAATTTCATGCCAAGAACTGCTTTTCTAACATTACTTCAGAGAAAAGTGAAGGGCATTTCTCATATGCCAACTAATTTTGTTGACAATGTGTGGAGCTATTTGGAAAGGGTTGTTATCTCGGTCATGAATCGCCACTCTGCAAACTATTACCAGTTGCAGGTTGCTACTCGTAGAGCTGTGGAGCACGTTATTGCTAAGAAGAAGAGCAATTCCATTCAACATGTGATGCAAGCTGTTGATATGGAGAAGCACACGGATTACACTTGCAATCCGGAGTACTTGCAGGAATATAACGAGCTGATGTCTTATCAAGAAGCATTTTTGAAAAAAGTTTTGGATGATGATCGATGTTCAAGTACTGTGAAGCTTGAAGGAGTTGGTAACATTAAAGTTAATCATCTGATAGAGTATCCGATCAATGTGTTGAATCAGGCCTTTGACTTGAAGGCAAGATTAATTGCCTATTGGAAGATTGTGCTGAGGAGGCTCATTGATAGTATTGCTTTGCATTTGATGCTAAGCATCAATGAACTGATTAACAATGATCTGCAGAAGGAGATTTGTAATGAACTTGGTGGCAGTGTTGAGAGGCTGCTTGAGGAGTCTCCATCTATTTCTGGTAAGAGACAAAGTTTAAGCAGGAGTGTGAAAGTTCTTAGAGAAAGCAAAGAGACTGTGGCCAACATTATGGACAGGATTGGAGTCTATGATGCCCTTGAAAACCTCAGGCGTCTCAACATTGCCAAAGAGGGAATCCAACTTCCCACCATTGTTGTTGTTGGTAATCAATCGTCTGGCAAGTCCAGTGTCCTTGAGTCATTAGCTGCCAGAGCTTGTTTTGGAGATAATGGCAAGCAAGTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAACGCAGCCACTCAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATAGTAAAGAAGAATGGAGTTCCTGATCTTACTATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTTCATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATCTCTCCTGAAGAGAGTATTATTTTGAATGTGCTCTCTGCTACTGTTGATTTTACTACTTGTGAGTCGATAAGGATGTCACAAACTGTTGATAAAACTGGGTTGAGAACGCTTGCTGTTGTGACAAAGGCTGATAAATCTCCTGAAGGTTTGCTGGAGAAGGTTACAGCTGACGATGTTAACATTGGTCTTGGTTATGTTTTGTAA
Protein sequence

>Msa0701700

MTIGNKSSTKANKLDESSSLALVHVDVDDQPQPLSVAPIVSSYNEKIRPVLDALENLRSLNIAKEGIQLPNIVVVGDQSSGKSSVLESLAAISLPRGQGICTRVPLVMRLQNHPLPQPELVLEYNGKQVSTDEENVSDAINAATEELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSATVDFSTCESIRMSQIVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEEARNEEQKLFESHSLLSKIDKSIVGIPVLAQKLVNVQAMIISKTLPEIIKKINEKLYNSVHELKTLPANLTSLADAMSAFLHIVSLSRDSLRKILLMGEFEEYPDDKQMHCTARLVERLNSYASDLQNCAESDSTKDFLMEEIVVLEEAKLIGLPNFMPRTAFLTLLQRKVKGISHMPTNFVDNVWSYLERVVISVMNRHSANYYQLQVATRRAVEHVIAKKKSNSIQHVMQAVDMEKHTDYTCNPEYLQEYNELMSYQEAFLKKVLDDDRCSSTVKLEGVGNIKVNHLIEYPINVLNQAFDLKARLIAYWKIVLRRLIDSIALHLMLSINELINNDLQKEICNELGGSVERLLEESPSISGKRQSLSRSVKVLRESKETVANIMDRIGVYDALENLRRLNIAKEGIQLPTIVVVGNQSSGKSSVLESLAARACFGDNGKQVSTDEENVSDAINAATQELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYISPEESIILNVLSATVDFTTCESIRMSQTVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVL*