Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005840 | XP_013466253.1 | 67.473 | 372 | 110 | 4 | 3 | 372 | 1 | 363 | 1.30e-166 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005840 | sp|Q3EBZ2|SKI23_ARATH | 34.005 | 397 | 221 | 14 | 8 | 372 | 3 | 390 | 1.80e-47 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0005840 | 0.815963 | 7.062417e-52 | -8.615850e-47 |
| Msa0005840 | Msa0032920 | -0.810798 | 9.637286e-51 | -8.615850e-47 |
| Msa0005840 | Msa0032960 | -0.803191 | 3.921796e-49 | -8.615850e-47 |
| Msa0005840 | Msa0084420 | 0.810172 | 1.315551e-50 | -8.615850e-47 |
| Msa0005840 | Msa0176340 | 0.800879 | 1.171336e-48 | -8.615850e-47 |
| Msa0005840 | Msa0219880 | 0.809409 | 1.919330e-50 | -8.615850e-47 |
| Msa0005840 | Msa0287740 | 0.804978 | 1.665917e-49 | -8.615850e-47 |
| Msa0005840 | Msa0481530 | 0.801180 | 1.017027e-48 | -8.615850e-47 |
| Msa0005840 | Msa0481750 | 0.811357 | 7.288983e-51 | -8.615850e-47 |
| Msa0005840 | Msa0529890 | 0.801285 | 9.675718e-49 | -8.615850e-47 |
| Msa0005840 | Msa0557070 | 0.810318 | 1.223342e-50 | -8.615850e-47 |
| Msa0005840 | Msa0574390 | 0.801887 | 7.281801e-49 | -8.615850e-47 |
| Msa0005840 | Msa0585560 | 0.808029 | 3.786258e-50 | -8.615850e-47 |
| Msa0005840 | Msa0625720 | 0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0005840 | Msa0658590 | 0.802642 | 5.092044e-49 | -8.615850e-47 |
| Msa0005840 | Msa0663390 | 0.809185 | 2.144270e-50 | -8.615850e-47 |
| Msa0005840 | Msa0711430 | 0.807789 | 4.257354e-50 | -8.615850e-47 |
| Msa0005840 | Msa0866520 | 0.823264 | 1.521068e-53 | -8.615850e-47 |
| Msa0005840 | Msa1035960 | 0.801801 | 7.586345e-49 | -8.615850e-47 |
| Msa0005840 | Msa1080640 | 0.827351 | 1.641306e-54 | -8.615850e-47 |
| Msa0005840 | Msa1126450 | 0.850424 | 1.713777e-60 | -8.615850e-47 |
| Msa0005840 | Msa1132480 | 0.801234 | 9.914065e-49 | -8.615850e-47 |
| Msa0005840 | Msa1145810 | 0.800011 | 1.760516e-48 | -8.615850e-47 |
| Msa0005840 | Msa1226470 | 0.819053 | 1.421349e-52 | -8.615850e-47 |
| Msa0005840 | Msa1359740 | 0.944904 | 8.255800e-104 | -8.615850e-47 |
| Msa0005840 | Msa1360980 | 0.807932 | 3.970508e-50 | -8.615850e-47 |
| Msa0005840 | Msa1366600 | 0.803674 | 3.115080e-49 | -8.615850e-47 |
| Msa0005840 | Msa1368430 | 0.801653 | 8.134879e-49 | -8.615850e-47 |
| Msa0005840 | Msa1382560 | 0.815528 | 8.826221e-52 | -8.615850e-47 |
| Msa0005840 | Msa1423350 | 0.802628 | 5.127083e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005840 | MtrunA17_Chr1g0157711 | 67.473 | 372 | 110 | 4 | 3 | 372 | 1 | 363 | 1.20e-170 | 480 |
| Msa0005840 | MtrunA17_Chr1g0146401 | 63.073 | 371 | 118 | 7 | 8 | 368 | 22 | 383 | 8.76e-157 | 446 |
| Msa0005840 | MtrunA17_Chr2g0303111 | 53.927 | 382 | 149 | 9 | 3 | 372 | 1 | 367 | 3.08e-131 | 380 |
| Msa0005840 | MtrunA17_Chr6g0457501 | 53.886 | 386 | 151 | 10 | 7 | 373 | 4 | 381 | 5.76e-130 | 379 |
| Msa0005840 | MtrunA17_Chr6g0457531 | 56.992 | 379 | 137 | 11 | 5 | 372 | 2 | 365 | 1.42e-129 | 376 |
| Msa0005840 | MtrunA17_Chr3g0088751 | 54.068 | 381 | 153 | 9 | 5 | 372 | 2 | 373 | 2.66e-127 | 371 |
| Msa0005840 | MtrunA17_Chr3g0088841 | 54.737 | 380 | 144 | 10 | 7 | 372 | 6 | 371 | 1.34e-123 | 361 |
| Msa0005840 | MtrunA17_Chr6g0457541 | 51.047 | 382 | 154 | 12 | 7 | 372 | 4 | 368 | 7.69e-115 | 338 |
| Msa0005840 | MtrunA17_Chr6g0460451 | 50.649 | 385 | 160 | 10 | 7 | 373 | 4 | 376 | 5.43e-111 | 329 |
| Msa0005840 | MtrunA17_Chr6g0460421 | 50.390 | 385 | 161 | 10 | 7 | 373 | 4 | 376 | 1.14e-110 | 328 |
| Msa0005840 | MtrunA17_Chr3g0088721 | 46.310 | 393 | 172 | 12 | 2 | 372 | 3 | 378 | 5.63e-102 | 306 |
| Msa0005840 | MtrunA17_Chr3g0089001 | 49.344 | 381 | 151 | 15 | 5 | 372 | 32 | 383 | 7.18e-101 | 303 |
| Msa0005840 | MtrunA17_Chr3g0088951 | 48.158 | 380 | 160 | 10 | 5 | 372 | 2 | 356 | 7.94e-101 | 302 |
| Msa0005840 | MtrunA17_Chr3g0088931 | 49.570 | 349 | 135 | 11 | 6 | 335 | 3 | 329 | 1.94e-97 | 295 |
| Msa0005840 | MtrunA17_Chr3g0088551 | 46.883 | 401 | 173 | 16 | 5 | 372 | 2 | 395 | 6.00e-97 | 294 |
| Msa0005840 | MtrunA17_Chr3g0127321 | 44.686 | 414 | 171 | 12 | 2 | 372 | 28 | 426 | 5.47e-96 | 293 |
| Msa0005840 | MtrunA17_Chr1g0170781 | 43.032 | 409 | 172 | 14 | 1 | 372 | 12 | 396 | 1.46e-91 | 280 |
| Msa0005840 | MtrunA17_Chr1g0151721 | 45.263 | 380 | 151 | 11 | 2 | 372 | 16 | 347 | 2.46e-91 | 278 |
| Msa0005840 | MtrunA17_Chr3g0088921 | 44.819 | 415 | 162 | 17 | 3 | 372 | 1 | 393 | 1.04e-90 | 278 |
| Msa0005840 | MtrunA17_Chr3g0127311 | 43.216 | 398 | 184 | 12 | 3 | 372 | 2 | 385 | 2.94e-89 | 275 |
| Msa0005840 | MtrunA17_Chr3g0088601 | 43.672 | 403 | 179 | 12 | 2 | 372 | 11 | 397 | 5.24e-89 | 274 |
| Msa0005840 | MtrunA17_Chr3g0088631 | 45.500 | 400 | 170 | 15 | 5 | 372 | 2 | 385 | 2.53e-88 | 271 |
| Msa0005840 | MtrunA17_Chr3g0088621 | 41.667 | 396 | 188 | 15 | 7 | 375 | 15 | 394 | 8.53e-87 | 268 |
| Msa0005840 | MtrunA17_Chr3g0088671 | 43.902 | 369 | 178 | 10 | 5 | 361 | 2 | 353 | 1.98e-84 | 260 |
| Msa0005840 | MtrunA17_Chr3g0088991 | 44.125 | 383 | 157 | 15 | 3 | 372 | 1 | 339 | 1.88e-83 | 258 |
| Msa0005840 | MtrunA17_Chr3g0088641 | 44.444 | 387 | 174 | 15 | 5 | 377 | 1 | 360 | 3.79e-83 | 257 |
| Msa0005840 | MtrunA17_Chr3g0089051 | 44.527 | 402 | 169 | 16 | 7 | 376 | 57 | 436 | 9.76e-83 | 259 |
| Msa0005840 | MtrunA17_Chr3g0088541 | 42.893 | 394 | 176 | 13 | 5 | 376 | 1 | 367 | 1.08e-82 | 256 |
| Msa0005840 | MtrunA17_Chr3g0088531 | 44.051 | 395 | 174 | 16 | 7 | 375 | 2 | 375 | 1.72e-82 | 256 |
| Msa0005840 | MtrunA17_Chr3g0089041 | 41.026 | 390 | 200 | 14 | 5 | 377 | 1 | 377 | 2.29e-77 | 243 |
| Msa0005840 | MtrunA17_Chr3g0088831 | 39.568 | 417 | 190 | 12 | 7 | 372 | 15 | 420 | 1.11e-76 | 243 |
| Msa0005840 | MtrunA17_Chr3g0088741 | 42.670 | 382 | 184 | 14 | 5 | 376 | 2 | 358 | 1.73e-76 | 240 |
| Msa0005840 | MtrunA17_Chr1g0146371 | 60.406 | 197 | 45 | 3 | 170 | 365 | 3 | 167 | 4.89e-73 | 224 |
| Msa0005840 | MtrunA17_Chr3g0096401 | 42.063 | 378 | 162 | 15 | 8 | 374 | 30 | 361 | 3.40e-68 | 219 |
| Msa0005840 | MtrunA17_Chr7g0214521 | 40.000 | 390 | 189 | 11 | 4 | 377 | 8 | 368 | 2.14e-67 | 217 |
| Msa0005840 | MtrunA17_Chr3g0088701 | 41.071 | 392 | 142 | 15 | 2 | 372 | 3 | 326 | 4.13e-65 | 210 |
| Msa0005840 | MtrunA17_Chr3g0088661 | 40.561 | 392 | 144 | 15 | 2 | 372 | 3 | 326 | 2.35e-63 | 205 |
| Msa0005840 | MtrunA17_Chr5g0417881 | 53.927 | 191 | 76 | 4 | 179 | 363 | 6 | 190 | 5.20e-60 | 192 |
| Msa0005840 | MtrunA17_Chr3g0088561 | 52.542 | 177 | 75 | 2 | 200 | 372 | 1 | 172 | 2.36e-56 | 182 |
| Msa0005840 | MtrunA17_Chr8g0392121 | 47.486 | 179 | 85 | 4 | 197 | 372 | 1 | 173 | 8.69e-45 | 152 |
| Msa0005840 | MtrunA17_Chr1g0151701 | 46.196 | 184 | 82 | 3 | 200 | 372 | 1 | 178 | 6.12e-43 | 147 |
| Msa0005840 | MtrunA17_Chr3g0092331 | 46.629 | 178 | 82 | 4 | 206 | 372 | 5 | 180 | 2.65e-41 | 144 |
| Msa0005840 | MtrunA17_Chr3g0088581 | 41.395 | 215 | 112 | 8 | 167 | 375 | 2 | 208 | 1.42e-40 | 142 |
| Msa0005840 | MtrunA17_Chr3g0088571 | 56.552 | 145 | 51 | 6 | 5 | 138 | 2 | 145 | 4.62e-38 | 134 |
| Msa0005840 | MtrunA17_Chr6g0457511 | 63.303 | 109 | 37 | 3 | 200 | 308 | 1 | 106 | 4.83e-38 | 132 |
| Msa0005840 | MtrunA17_Chr3g0088711 | 43.842 | 203 | 90 | 6 | 173 | 372 | 1 | 182 | 9.12e-37 | 131 |
| Msa0005840 | MtrunA17_Chr3g0088691 | 42.246 | 187 | 98 | 5 | 5 | 187 | 2 | 182 | 1.34e-35 | 128 |
| Msa0005840 | MtrunA17_Chr3g0088591 | 45.806 | 155 | 66 | 4 | 2 | 138 | 15 | 169 | 3.41e-34 | 124 |
| Msa0005840 | MtrunA17_Chr3g0088681 | 43.716 | 183 | 75 | 6 | 200 | 372 | 1 | 165 | 1.55e-33 | 122 |
| Msa0005840 | MtrunA17_Chr2g0300541 | 31.043 | 393 | 213 | 16 | 3 | 366 | 21 | 384 | 3.89e-33 | 127 |
| Msa0005840 | MtrunA17_Chr8g0371031 | 29.040 | 396 | 229 | 11 | 7 | 373 | 24 | 396 | 6.72e-33 | 127 |
| Msa0005840 | MtrunA17_Chr8g0371101 | 31.234 | 397 | 226 | 14 | 3 | 373 | 1 | 376 | 1.17e-32 | 125 |
| Msa0005840 | MtrunA17_Chr1g0146361 | 72.619 | 84 | 19 | 2 | 292 | 373 | 1 | 82 | 1.68e-32 | 117 |
| Msa0005840 | MtrunA17_Chr1g0146381 | 67.045 | 88 | 29 | 0 | 1 | 88 | 1 | 88 | 3.90e-32 | 116 |
| Msa0005840 | MtrunA17_Chr3g0088651 | 46.763 | 139 | 66 | 4 | 5 | 137 | 2 | 138 | 5.76e-26 | 103 |
| Msa0005840 | MtrunA17_Chr4g0010441 | 56.098 | 82 | 33 | 1 | 294 | 372 | 4 | 85 | 5.21e-23 | 92.4 |
| Msa0005840 | MtrunA17_Chr5g0435201 | 27.859 | 341 | 207 | 11 | 3 | 328 | 1 | 317 | 1.30e-21 | 94.7 |
| Msa0005840 | MtrunA17_Chr6g0457521 | 56.180 | 89 | 33 | 2 | 4 | 87 | 54 | 141 | 1.36e-21 | 90.9 |
| Msa0005840 | MtrunA17_Chr6g0488491 | 28.399 | 331 | 206 | 11 | 7 | 328 | 7 | 315 | 2.08e-21 | 94.4 |
| Msa0005840 | MtrunA17_Chr8g0349911 | 60.938 | 64 | 25 | 0 | 156 | 219 | 85 | 148 | 1.81e-19 | 85.5 |
| Msa0005840 | MtrunA17_Chr8g0378641 | 25.735 | 408 | 215 | 17 | 7 | 369 | 12 | 376 | 8.40e-18 | 84.0 |
| Msa0005840 | MtrunA17_Chr3g0143621 | 26.829 | 410 | 236 | 18 | 5 | 373 | 20 | 406 | 4.78e-17 | 82.0 |
| Msa0005840 | MtrunA17_Chr3g0101901 | 39.310 | 145 | 70 | 6 | 5 | 143 | 23 | 155 | 4.86e-17 | 77.8 |
| Msa0005840 | MtrunA17_Chr8g0351561 | 43.434 | 99 | 49 | 4 | 209 | 307 | 1 | 92 | 6.62e-17 | 77.4 |
| Msa0005840 | MtrunA17_Chr6g0449121 | 53.165 | 79 | 27 | 2 | 246 | 324 | 1 | 69 | 7.31e-17 | 74.3 |
| Msa0005840 | MtrunA17_Chr7g0261121 | 25.876 | 371 | 202 | 13 | 1 | 328 | 6 | 346 | 1.08e-14 | 74.7 |
| Msa0005840 | MtrunA17_Chr6g0457551 | 70.270 | 37 | 11 | 0 | 8 | 44 | 5 | 41 | 2.96e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005840 | AT2G17030.1 | 34.005 | 397 | 221 | 14 | 8 | 372 | 3 | 390 | 1.83e-48 | 169 |
| Msa0005840 | AT2G17036.1 | 31.899 | 395 | 226 | 14 | 8 | 372 | 3 | 384 | 4.31e-44 | 157 |
| Msa0005840 | AT2G17036.2 | 31.899 | 395 | 226 | 14 | 8 | 372 | 2 | 383 | 4.41e-44 | 157 |
| Msa0005840 | AT5G24040.1 | 24.607 | 382 | 254 | 13 | 9 | 372 | 4 | 369 | 1.67e-23 | 100 |
| Msa0005840 | AT5G60060.1 | 27.859 | 341 | 216 | 15 | 2 | 325 | 4 | 331 | 6.11e-17 | 82.0 |
Find 96 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGGAGTGTTACTGTTAA+TGG | 0.260239 | 1_1:+8651414 | None:intergenic |
| TGATCCAAGGAGTACGAATT+AGG | 0.261247 | 1_1:+8651341 | None:intergenic |
| TGGGTGAAGGTGGCAAATTT+AGG | 0.262056 | 1_1:-8650737 | Msa0005840:CDS |
| CAGAACAATTTACGATATTC+AGG | 0.271061 | 1_1:+8650542 | None:intergenic |
| TCAGTTAGTGGCTGAATCTT+TGG | 0.273972 | 1_1:-8650918 | Msa0005840:CDS |
| TGTGTTTAAGCTTAATAAAA+AGG | 0.297935 | 1_1:-8650768 | Msa0005840:CDS |
| AAAATGTTACGGTGGTGATT+TGG | 0.307795 | 1_1:+8651481 | None:intergenic |
| GGGTGAAGGTGGCAAATTTA+GGG | 0.314083 | 1_1:-8650736 | Msa0005840:CDS |
| CAATTTATCTCTCATTCATT+TGG | 0.334290 | 1_1:-8651224 | Msa0005840:CDS |
| TCAAATGCGGGGATGATAAT+TGG | 0.334319 | 1_1:-8651057 | Msa0005840:CDS |
| CTGAATATCGTAAATTGTTC+TGG | 0.359358 | 1_1:-8650541 | Msa0005840:CDS |
| AAATGTTACGGTGGTGATTT+GGG | 0.365695 | 1_1:+8651482 | None:intergenic |
| CCTAAGTAAGCCGACATGTT+AGG | 0.373522 | 1_1:+8651025 | None:intergenic |
| TTTACGATATTCAGGATAAT+CGG | 0.381408 | 1_1:+8650550 | None:intergenic |
| AACTGAATAGTGGAGTTATC+TGG | 0.396368 | 1_1:+8650935 | None:intergenic |
| TTTGAACACTACCGGTTGTC+CGG | 0.397021 | 1_1:+8651075 | None:intergenic |
| TCCTTACATGTTCATGTTCG+TGG | 0.406986 | 1_1:+8650795 | None:intergenic |
| GGAATTTGAGGAGTGGATAC+TGG | 0.407057 | 1_1:+8651452 | None:intergenic |
| GAAGCGAATCAGATCGATTT+CGG | 0.409639 | 1_1:+8651540 | None:intergenic |
| GTGACAGCAACGACTTTGCC+AGG | 0.413150 | 1_1:+8651142 | None:intergenic |
| GAGGAGTGGGTGGTAGTGTT+GGG | 0.413864 | 1_1:+8651288 | None:intergenic |
| CTCCATGTCGATGGCGGTGG+AGG | 0.420685 | 1_1:-8651620 | None:intergenic |
| CCTTATGTGGTAGACAAAAC+TGG | 0.423087 | 1_1:-8650977 | Msa0005840:CDS |
| CCTAACATGTCGGCTTACTT+AGG | 0.428884 | 1_1:-8651025 | Msa0005840:CDS |
| AAAATTACACAAAACTCAAC+TGG | 0.429743 | 1_1:-8651316 | Msa0005840:CDS |
| GATGAGGAAGAAGCTGTGTT+TGG | 0.431354 | 1_1:+8651381 | None:intergenic |
| CAATGTCGAGTGGGAATTTG+AGG | 0.432815 | 1_1:+8651440 | None:intergenic |
| CGAGGAGTGGGTGGTAGTGT+TGG | 0.432869 | 1_1:+8651287 | None:intergenic |
| CCAGGGTTCATGTAACCATA+TGG | 0.432952 | 1_1:+8651160 | None:intergenic |
| TAACTCCACTATTCAGTTAG+TGG | 0.450699 | 1_1:-8650930 | Msa0005840:CDS |
| TTCAGATTCTCAATCCACTT+TGG | 0.457114 | 1_1:+8650512 | None:intergenic |
| ATCCAATTCAAAAGTTCCTT+CGG | 0.462497 | 1_1:+8651580 | None:intergenic |
| AATGATCACACAATTCCCTT+TGG | 0.478379 | 1_1:+8650649 | None:intergenic |
| GTGGCTGAATCTTTGGTTGG+TGG | 0.478548 | 1_1:-8650911 | Msa0005840:CDS |
| AGATTCTCAATCCACTTTGG+AGG | 0.478987 | 1_1:+8650515 | None:intergenic |
| AAATCCTAATTCGTACTCCT+TGG | 0.479712 | 1_1:-8651345 | Msa0005840:CDS |
| TTCTCAATCCACTTTGGAGG+TGG | 0.485651 | 1_1:+8650518 | None:intergenic |
| TTCAGCCACTAACTGAATAG+TGG | 0.487571 | 1_1:+8650925 | None:intergenic |
| CGGATTTGTGTCTTGCCAAA+GGG | 0.495229 | 1_1:-8650664 | Msa0005840:CDS |
| TTAAAAGTGCCAACAACGAT+AGG | 0.496039 | 1_1:+8651103 | None:intergenic |
| TCCGATCGATTTGTAGCAAG+TGG | 0.496425 | 1_1:-8651519 | Msa0005840:CDS |
| CGAATTAGGATTTGTGGTGG+TGG | 0.496853 | 1_1:+8651355 | None:intergenic |
| AACACAGATGACGTGCCATA+TGG | 0.497392 | 1_1:-8651175 | Msa0005840:CDS |
| CGATGGCGGTGGAGGCAGAT+TGG | 0.501078 | 1_1:-8651612 | Msa0005840:CDS |
| ACCACGAACATGAACATGTA+AGG | 0.505161 | 1_1:-8650796 | Msa0005840:CDS |
| GTCGTTGCTGTCACTTGCCA+TGG | 0.508046 | 1_1:-8651133 | Msa0005840:CDS |
| AGTGGAGTTATCTGGTTCAA+TGG | 0.508785 | 1_1:+8650943 | None:intergenic |
| ACTGGATGGTTAAAATGTTA+CGG | 0.510475 | 1_1:+8651470 | None:intergenic |
| AACCGGTAGTGTTCAAATGC+GGG | 0.511958 | 1_1:-8651069 | Msa0005840:CDS |
| TTTCAAAGGCCGACCTTATG+TGG | 0.512326 | 1_1:-8650990 | Msa0005840:CDS |
| TGGCGATATCAAATTCTTAG+TGG | 0.518608 | 1_1:-8650888 | Msa0005840:CDS |
| TTTGAGGAGTGGATACTGGA+TGG | 0.521703 | 1_1:+8651456 | None:intergenic |
| GGATATGGAGTGGGTGAAGG+TGG | 0.524790 | 1_1:-8650747 | Msa0005840:CDS |
| TCCCCGCATTTGAACACTAC+CGG | 0.526550 | 1_1:+8651067 | None:intergenic |
| ATCCTCCATGTCGATGGCGG+TGG | 0.528055 | 1_1:-8651623 | None:intergenic |
| GTGAGAAATGTCCGAGGAGT+GGG | 0.529372 | 1_1:+8651275 | None:intergenic |
| TCGGATTTGTGTCTTGCCAA+AGG | 0.531536 | 1_1:-8650665 | Msa0005840:CDS |
| GGAGTACGAATTAGGATTTG+TGG | 0.532902 | 1_1:+8651349 | None:intergenic |
| TAAAAGTGCCAACAACGATA+GGG | 0.541260 | 1_1:+8651104 | None:intergenic |
| AAAGGATATGGAGTGGGTGA+AGG | 0.544340 | 1_1:-8650750 | Msa0005840:CDS |
| TTAGTGGCTGAATCTTTGGT+TGG | 0.546051 | 1_1:-8650914 | Msa0005840:CDS |
| TTGAAGTCGAAGACAGGAGA+AGG | 0.548552 | 1_1:+8651247 | None:intergenic |
| TCGAAGACAGGAGAAGGAAA+AGG | 0.548613 | 1_1:+8651253 | None:intergenic |
| AAATTGTTGAAGTCGAAGAC+AGG | 0.549220 | 1_1:+8651241 | None:intergenic |
| TGCCTCCACCGCCATCGACA+TGG | 0.550573 | 1_1:+8651618 | None:intergenic |
| GTTACGGTGGTGATTTGGGA+TGG | 0.559097 | 1_1:+8651486 | None:intergenic |
| GCTGAATCTTTGGTTGGTGG+TGG | 0.561980 | 1_1:-8650908 | Msa0005840:CDS |
| GGAAGAAGCTGTGTTTGGAG+AGG | 0.580108 | 1_1:+8651386 | None:intergenic |
| CAACACTACCACCCACTCCT+CGG | 0.581458 | 1_1:-8651286 | Msa0005840:CDS |
| GCTAGCATCCTCCATGTCGA+TGG | 0.588331 | 1_1:-8651629 | None:intergenic |
| GAAGGTTATTCCTAACATGT+CGG | 0.589130 | 1_1:-8651035 | Msa0005840:CDS |
| TGTTCTGGCCACCTCCAAAG+TGG | 0.594726 | 1_1:-8650526 | Msa0005840:CDS |
| ACGAAAAGTCATTATACAGA+CGG | 0.599089 | 1_1:+8650828 | None:intergenic |
| TATTCAGGATAATCGGTCAA+AGG | 0.599889 | 1_1:+8650557 | None:intergenic |
| GCCACTTGCTACAAATCGAT+CGG | 0.603998 | 1_1:+8651518 | None:intergenic |
| GGTGAGAAATGTCCGAGGAG+TGG | 0.606106 | 1_1:+8651274 | None:intergenic |
| TAATGGAATCAATGTCGAGT+GGG | 0.612257 | 1_1:+8651431 | None:intergenic |
| TGTTTGGAGAGGTTACAGAA+TGG | 0.615612 | 1_1:+8651397 | None:intergenic |
| ATGCGGGGATGATAATTGGA+AGG | 0.616474 | 1_1:-8651053 | Msa0005840:CDS |
| TTTGTGGTGGTGGTTTGATG+AGG | 0.616532 | 1_1:+8651365 | None:intergenic |
| AGAAATGTCCGAGGAGTGGG+TGG | 0.622073 | 1_1:+8651278 | None:intergenic |
| AGCATCCTCCATGTCGATGG+CGG | 0.625682 | 1_1:-8651626 | None:intergenic |
| TCGAGTGGGAATTTGAGGAG+TGG | 0.626686 | 1_1:+8651445 | None:intergenic |
| GGTGAAGGTGGCAAATTTAG+GGG | 0.632817 | 1_1:-8650735 | Msa0005840:CDS |
| ACCGGTAGTGTTCAAATGCG+GGG | 0.634231 | 1_1:-8651068 | Msa0005840:CDS |
| CATCTGTGTTGTCGTGACGA+TGG | 0.639772 | 1_1:+8651188 | None:intergenic |
| TGACAGCAACGACTTTGCCA+GGG | 0.644576 | 1_1:+8651143 | None:intergenic |
| CCATATGGTTACATGAACCC+TGG | 0.645312 | 1_1:-8651160 | Msa0005840:CDS |
| ATGTGGTAGACAAAACTGGA+TGG | 0.655358 | 1_1:-8650973 | Msa0005840:CDS |
| TTAATGGAATCAATGTCGAG+TGG | 0.660878 | 1_1:+8651430 | None:intergenic |
| GTACGAATTAGGATTTGTGG+TGG | 0.660887 | 1_1:+8651352 | None:intergenic |
| AGATTGGTCTGAACTGCCGA+AGG | 0.661347 | 1_1:-8651596 | Msa0005840:CDS |
| AAATTCTTAGTGGAGAGCGA+TGG | 0.664986 | 1_1:-8650878 | Msa0005840:CDS |
| CAACCGGTAGTGTTCAAATG+CGG | 0.669905 | 1_1:-8651070 | Msa0005840:CDS |
| GAAAAGGTGAGAAATGTCCG+AGG | 0.710899 | 1_1:+8651269 | None:intergenic |
| GGATGGTTAAAATGTTACGG+TGG | 0.793282 | 1_1:+8651473 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTGTTTAAGCTTAATAAAA+AGG | - | chr1_1:8651353-8651372 | Msa0005840:CDS | 20.0% |
| !! | TAAGCTTAATAAAAAGGATA+TGG | - | chr1_1:8651359-8651378 | Msa0005840:CDS | 20.0% |
| !! | TGTGTTTAAGCTTAATAAAA+AGG | - | chr1_1:8651353-8651372 | Msa0005840:CDS | 20.0% |
| !! | TAAGCTTAATAAAAAGGATA+TGG | - | chr1_1:8651359-8651378 | Msa0005840:CDS | 20.0% |
| !!! | TGTGTAATTTTAATGATCCA+AGG | + | chr1_1:8650796-8650815 | None:intergenic | 25.0% |
| ! | AAAATTACACAAAACTCAAC+TGG | - | chr1_1:8650805-8650824 | Msa0005840:CDS | 25.0% |
| ! | CAATTTATCTCTCATTCATT+TGG | - | chr1_1:8650897-8650916 | Msa0005840:CDS | 25.0% |
| ! | TTAATAAAAAGGATATGGAG+TGG | - | chr1_1:8651364-8651383 | Msa0005840:CDS | 25.0% |
| ! | TAATAAAAAGGATATGGAGT+GGG | - | chr1_1:8651365-8651384 | Msa0005840:CDS | 25.0% |
| ! | TTTACGATATTCAGGATAAT+CGG | + | chr1_1:8651574-8651593 | None:intergenic | 25.0% |
| !!! | TGTGTAATTTTAATGATCCA+AGG | + | chr1_1:8650796-8650815 | None:intergenic | 25.0% |
| ! | AAAATTACACAAAACTCAAC+TGG | - | chr1_1:8650805-8650824 | Msa0005840:CDS | 25.0% |
| ! | CAATTTATCTCTCATTCATT+TGG | - | chr1_1:8650897-8650916 | Msa0005840:CDS | 25.0% |
| ! | TTAATAAAAAGGATATGGAG+TGG | - | chr1_1:8651364-8651383 | Msa0005840:CDS | 25.0% |
| ! | TAATAAAAAGGATATGGAGT+GGG | - | chr1_1:8651365-8651384 | Msa0005840:CDS | 25.0% |
| ! | TTTACGATATTCAGGATAAT+CGG | + | chr1_1:8651574-8651593 | None:intergenic | 25.0% |
| ATCCAATTCAAAAGTTCCTT+CGG | + | chr1_1:8650544-8650563 | None:intergenic | 30.0% | |
| ACTGGATGGTTAAAATGTTA+CGG | + | chr1_1:8650654-8650673 | None:intergenic | 30.0% | |
| ACGAAAAGTCATTATACAGA+CGG | + | chr1_1:8651296-8651315 | None:intergenic | 30.0% | |
| CAGAACAATTTACGATATTC+AGG | + | chr1_1:8651582-8651601 | None:intergenic | 30.0% | |
| CTGAATATCGTAAATTGTTC+TGG | - | chr1_1:8651580-8651599 | Msa0005840:CDS | 30.0% | |
| ATCCAATTCAAAAGTTCCTT+CGG | + | chr1_1:8650544-8650563 | None:intergenic | 30.0% | |
| ACTGGATGGTTAAAATGTTA+CGG | + | chr1_1:8650654-8650673 | None:intergenic | 30.0% | |
| ACGAAAAGTCATTATACAGA+CGG | + | chr1_1:8651296-8651315 | None:intergenic | 30.0% | |
| CAGAACAATTTACGATATTC+AGG | + | chr1_1:8651582-8651601 | None:intergenic | 30.0% | |
| CTGAATATCGTAAATTGTTC+TGG | - | chr1_1:8651580-8651599 | Msa0005840:CDS | 30.0% | |
| AAATGTTACGGTGGTGATTT+GGG | + | chr1_1:8650642-8650661 | None:intergenic | 35.0% | |
| AAAATGTTACGGTGGTGATT+TGG | + | chr1_1:8650643-8650662 | None:intergenic | 35.0% | |
| TAATGGAATCAATGTCGAGT+GGG | + | chr1_1:8650693-8650712 | None:intergenic | 35.0% | |
| TTAATGGAATCAATGTCGAG+TGG | + | chr1_1:8650694-8650713 | None:intergenic | 35.0% | |
| ! | GAATGGAGTGTTACTGTTAA+TGG | + | chr1_1:8650710-8650729 | None:intergenic | 35.0% |
| AAATCCTAATTCGTACTCCT+TGG | - | chr1_1:8650776-8650795 | Msa0005840:CDS | 35.0% | |
| AAATTGTTGAAGTCGAAGAC+AGG | + | chr1_1:8650883-8650902 | None:intergenic | 35.0% | |
| !! | TAAAAGTGCCAACAACGATA+GGG | + | chr1_1:8651020-8651039 | None:intergenic | 35.0% |
| !! | TTAAAAGTGCCAACAACGAT+AGG | + | chr1_1:8651021-8651040 | None:intergenic | 35.0% |
| !! | GTTGGCACTTTTAATTGTAC+CGG | - | chr1_1:8651027-8651046 | Msa0005840:CDS | 35.0% |
| !! | TTTTAATTGTACCGGACAAC+CGG | - | chr1_1:8651035-8651054 | Msa0005840:CDS | 35.0% |
| GAAGGTTATTCCTAACATGT+CGG | - | chr1_1:8651086-8651105 | Msa0005840:CDS | 35.0% | |
| ! | TTTTGTCTACCACATAAGGT+CGG | + | chr1_1:8651143-8651162 | None:intergenic | 35.0% |
| ! | AACTGAATAGTGGAGTTATC+TGG | + | chr1_1:8651189-8651208 | None:intergenic | 35.0% |
| TAACTCCACTATTCAGTTAG+TGG | - | chr1_1:8651191-8651210 | Msa0005840:CDS | 35.0% | |
| TGGCGATATCAAATTCTTAG+TGG | - | chr1_1:8651233-8651252 | Msa0005840:CDS | 35.0% | |
| !!! | TTCATTTTCTGTTTCTGCGT+CGG | - | chr1_1:8651437-8651456 | Msa0005840:CDS | 35.0% |
| AATGATCACACAATTCCCTT+TGG | + | chr1_1:8651475-8651494 | None:intergenic | 35.0% | |
| !!! | GTATTGTGAGAGCTCTTTTT+TGG | - | chr1_1:8651518-8651537 | Msa0005840:CDS | 35.0% |
| !!! | TCTTTTTTGGACTTGGATGA+TGG | - | chr1_1:8651531-8651550 | Msa0005840:CDS | 35.0% |
| TATTCAGGATAATCGGTCAA+AGG | + | chr1_1:8651567-8651586 | None:intergenic | 35.0% | |
| TTCAGATTCTCAATCCACTT+TGG | + | chr1_1:8651612-8651631 | None:intergenic | 35.0% | |
| AAATGTTACGGTGGTGATTT+GGG | + | chr1_1:8650642-8650661 | None:intergenic | 35.0% | |
| AAAATGTTACGGTGGTGATT+TGG | + | chr1_1:8650643-8650662 | None:intergenic | 35.0% | |
| TAATGGAATCAATGTCGAGT+GGG | + | chr1_1:8650693-8650712 | None:intergenic | 35.0% | |
| TTAATGGAATCAATGTCGAG+TGG | + | chr1_1:8650694-8650713 | None:intergenic | 35.0% | |
| ! | GAATGGAGTGTTACTGTTAA+TGG | + | chr1_1:8650710-8650729 | None:intergenic | 35.0% |
| AAATCCTAATTCGTACTCCT+TGG | - | chr1_1:8650776-8650795 | Msa0005840:CDS | 35.0% | |
| AAATTGTTGAAGTCGAAGAC+AGG | + | chr1_1:8650883-8650902 | None:intergenic | 35.0% | |
| !! | TAAAAGTGCCAACAACGATA+GGG | + | chr1_1:8651020-8651039 | None:intergenic | 35.0% |
| !! | TTAAAAGTGCCAACAACGAT+AGG | + | chr1_1:8651021-8651040 | None:intergenic | 35.0% |
| !! | GTTGGCACTTTTAATTGTAC+CGG | - | chr1_1:8651027-8651046 | Msa0005840:CDS | 35.0% |
| !! | TTTTAATTGTACCGGACAAC+CGG | - | chr1_1:8651035-8651054 | Msa0005840:CDS | 35.0% |
| GAAGGTTATTCCTAACATGT+CGG | - | chr1_1:8651086-8651105 | Msa0005840:CDS | 35.0% | |
| ! | TTTTGTCTACCACATAAGGT+CGG | + | chr1_1:8651143-8651162 | None:intergenic | 35.0% |
| ! | AACTGAATAGTGGAGTTATC+TGG | + | chr1_1:8651189-8651208 | None:intergenic | 35.0% |
| TAACTCCACTATTCAGTTAG+TGG | - | chr1_1:8651191-8651210 | Msa0005840:CDS | 35.0% | |
| TGGCGATATCAAATTCTTAG+TGG | - | chr1_1:8651233-8651252 | Msa0005840:CDS | 35.0% | |
| !!! | TTCATTTTCTGTTTCTGCGT+CGG | - | chr1_1:8651437-8651456 | Msa0005840:CDS | 35.0% |
| AATGATCACACAATTCCCTT+TGG | + | chr1_1:8651475-8651494 | None:intergenic | 35.0% | |
| !!! | GTATTGTGAGAGCTCTTTTT+TGG | - | chr1_1:8651518-8651537 | Msa0005840:CDS | 35.0% |
| !!! | TCTTTTTTGGACTTGGATGA+TGG | - | chr1_1:8651531-8651550 | Msa0005840:CDS | 35.0% |
| TATTCAGGATAATCGGTCAA+AGG | + | chr1_1:8651567-8651586 | None:intergenic | 35.0% | |
| TTCAGATTCTCAATCCACTT+TGG | + | chr1_1:8651612-8651631 | None:intergenic | 35.0% | |
| ! | TGCCGAAGGAACTTTTGAAT+TGG | - | chr1_1:8650539-8650558 | Msa0005840:CDS | 40.0% |
| ! | GAAGCGAATCAGATCGATTT+CGG | + | chr1_1:8650584-8650603 | None:intergenic | 40.0% |
| GGATGGTTAAAATGTTACGG+TGG | + | chr1_1:8650651-8650670 | None:intergenic | 40.0% | |
| TGTTTGGAGAGGTTACAGAA+TGG | + | chr1_1:8650727-8650746 | None:intergenic | 40.0% | |
| GTACGAATTAGGATTTGTGG+TGG | + | chr1_1:8650772-8650791 | None:intergenic | 40.0% | |
| GGAGTACGAATTAGGATTTG+TGG | + | chr1_1:8650775-8650794 | None:intergenic | 40.0% | |
| ! | TGATCCAAGGAGTACGAATT+AGG | + | chr1_1:8650783-8650802 | None:intergenic | 40.0% |
| !!! | CAACGATAGGGTTTTTTCCA+TGG | + | chr1_1:8651008-8651027 | None:intergenic | 40.0% |
| GGAAAAAACCCTATCGTTGT+TGG | - | chr1_1:8651009-8651028 | Msa0005840:CDS | 40.0% | |
| TCAAATGCGGGGATGATAAT+TGG | - | chr1_1:8651064-8651083 | Msa0005840:CDS | 40.0% | |
| ! | GGAGACATCTACGTTTTCAA+AGG | - | chr1_1:8651117-8651136 | Msa0005840:CDS | 40.0% |
| !! | CCAGTTTTGTCTACCACATA+AGG | + | chr1_1:8651147-8651166 | None:intergenic | 40.0% |
| CCTTATGTGGTAGACAAAAC+TGG | - | chr1_1:8651144-8651163 | Msa0005840:CDS | 40.0% | |
| ATGTGGTAGACAAAACTGGA+TGG | - | chr1_1:8651148-8651167 | Msa0005840:CDS | 40.0% | |
| ! | AGTGGAGTTATCTGGTTCAA+TGG | + | chr1_1:8651181-8651200 | None:intergenic | 40.0% |
| TTCAGCCACTAACTGAATAG+TGG | + | chr1_1:8651199-8651218 | None:intergenic | 40.0% | |
| TCAGTTAGTGGCTGAATCTT+TGG | - | chr1_1:8651203-8651222 | Msa0005840:CDS | 40.0% | |
| TTAGTGGCTGAATCTTTGGT+TGG | - | chr1_1:8651207-8651226 | Msa0005840:CDS | 40.0% | |
| AAATTCTTAGTGGAGAGCGA+TGG | - | chr1_1:8651243-8651262 | Msa0005840:CDS | 40.0% | |
| ACCACGAACATGAACATGTA+AGG | - | chr1_1:8651325-8651344 | Msa0005840:CDS | 40.0% | |
| TCCTTACATGTTCATGTTCG+TGG | + | chr1_1:8651329-8651348 | None:intergenic | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | - | chr1_1:8651404-8651423 | Msa0005840:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | - | chr1_1:8651405-8651424 | Msa0005840:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | - | chr1_1:8651406-8651425 | Msa0005840:CDS | 40.0% |
| !!! | TGAGAGCTCTTTTTTGGACT+TGG | - | chr1_1:8651524-8651543 | Msa0005840:CDS | 40.0% |
| !! | TTTTGGACTTGGATGATGGT+CGG | - | chr1_1:8651535-8651554 | Msa0005840:CDS | 40.0% |
| AGATTCTCAATCCACTTTGG+AGG | + | chr1_1:8651609-8651628 | None:intergenic | 40.0% | |
| ! | TGCCGAAGGAACTTTTGAAT+TGG | - | chr1_1:8650539-8650558 | Msa0005840:CDS | 40.0% |
| ! | GAAGCGAATCAGATCGATTT+CGG | + | chr1_1:8650584-8650603 | None:intergenic | 40.0% |
| GGATGGTTAAAATGTTACGG+TGG | + | chr1_1:8650651-8650670 | None:intergenic | 40.0% | |
| TGTTTGGAGAGGTTACAGAA+TGG | + | chr1_1:8650727-8650746 | None:intergenic | 40.0% | |
| GTACGAATTAGGATTTGTGG+TGG | + | chr1_1:8650772-8650791 | None:intergenic | 40.0% | |
| GGAGTACGAATTAGGATTTG+TGG | + | chr1_1:8650775-8650794 | None:intergenic | 40.0% | |
| ! | TGATCCAAGGAGTACGAATT+AGG | + | chr1_1:8650783-8650802 | None:intergenic | 40.0% |
| !!! | CAACGATAGGGTTTTTTCCA+TGG | + | chr1_1:8651008-8651027 | None:intergenic | 40.0% |
| GGAAAAAACCCTATCGTTGT+TGG | - | chr1_1:8651009-8651028 | Msa0005840:CDS | 40.0% | |
| TCAAATGCGGGGATGATAAT+TGG | - | chr1_1:8651064-8651083 | Msa0005840:CDS | 40.0% | |
| ! | GGAGACATCTACGTTTTCAA+AGG | - | chr1_1:8651117-8651136 | Msa0005840:CDS | 40.0% |
| !! | CCAGTTTTGTCTACCACATA+AGG | + | chr1_1:8651147-8651166 | None:intergenic | 40.0% |
| CCTTATGTGGTAGACAAAAC+TGG | - | chr1_1:8651144-8651163 | Msa0005840:CDS | 40.0% | |
| ATGTGGTAGACAAAACTGGA+TGG | - | chr1_1:8651148-8651167 | Msa0005840:CDS | 40.0% | |
| ! | AGTGGAGTTATCTGGTTCAA+TGG | + | chr1_1:8651181-8651200 | None:intergenic | 40.0% |
| TTCAGCCACTAACTGAATAG+TGG | + | chr1_1:8651199-8651218 | None:intergenic | 40.0% | |
| TCAGTTAGTGGCTGAATCTT+TGG | - | chr1_1:8651203-8651222 | Msa0005840:CDS | 40.0% | |
| TTAGTGGCTGAATCTTTGGT+TGG | - | chr1_1:8651207-8651226 | Msa0005840:CDS | 40.0% | |
| AAATTCTTAGTGGAGAGCGA+TGG | - | chr1_1:8651243-8651262 | Msa0005840:CDS | 40.0% | |
| ACCACGAACATGAACATGTA+AGG | - | chr1_1:8651325-8651344 | Msa0005840:CDS | 40.0% | |
| TCCTTACATGTTCATGTTCG+TGG | + | chr1_1:8651329-8651348 | None:intergenic | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | - | chr1_1:8651404-8651423 | Msa0005840:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | - | chr1_1:8651405-8651424 | Msa0005840:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | - | chr1_1:8651406-8651425 | Msa0005840:CDS | 40.0% |
| !!! | TGAGAGCTCTTTTTTGGACT+TGG | - | chr1_1:8651524-8651543 | Msa0005840:CDS | 40.0% |
| !! | TTTTGGACTTGGATGATGGT+CGG | - | chr1_1:8651535-8651554 | Msa0005840:CDS | 40.0% |
| AGATTCTCAATCCACTTTGG+AGG | + | chr1_1:8651609-8651628 | None:intergenic | 40.0% | |
| !! | TCCGATCGATTTGTAGCAAG+TGG | - | chr1_1:8650602-8650621 | Msa0005840:CDS | 45.0% |
| ! | GCCACTTGCTACAAATCGAT+CGG | + | chr1_1:8650606-8650625 | None:intergenic | 45.0% |
| TTTGAGGAGTGGATACTGGA+TGG | + | chr1_1:8650668-8650687 | None:intergenic | 45.0% | |
| GGAATTTGAGGAGTGGATAC+TGG | + | chr1_1:8650672-8650691 | None:intergenic | 45.0% | |
| CAATGTCGAGTGGGAATTTG+AGG | + | chr1_1:8650684-8650703 | None:intergenic | 45.0% | |
| GATGAGGAAGAAGCTGTGTT+TGG | + | chr1_1:8650743-8650762 | None:intergenic | 45.0% | |
| !! | TTTGTGGTGGTGGTTTGATG+AGG | + | chr1_1:8650759-8650778 | None:intergenic | 45.0% |
| CGAATTAGGATTTGTGGTGG+TGG | + | chr1_1:8650769-8650788 | None:intergenic | 45.0% | |
| GAAAAGGTGAGAAATGTCCG+AGG | + | chr1_1:8650855-8650874 | None:intergenic | 45.0% | |
| TCGAAGACAGGAGAAGGAAA+AGG | + | chr1_1:8650871-8650890 | None:intergenic | 45.0% | |
| TTGAAGTCGAAGACAGGAGA+AGG | + | chr1_1:8650877-8650896 | None:intergenic | 45.0% | |
| AACACAGATGACGTGCCATA+TGG | - | chr1_1:8650946-8650965 | Msa0005840:CDS | 45.0% | |
| CCAGGGTTCATGTAACCATA+TGG | + | chr1_1:8650964-8650983 | None:intergenic | 45.0% | |
| CCATATGGTTACATGAACCC+TGG | - | chr1_1:8650961-8650980 | Msa0005840:CDS | 45.0% | |
| ! | TTTGAACACTACCGGTTGTC+CGG | + | chr1_1:8651049-8651068 | None:intergenic | 45.0% |
| CAACCGGTAGTGTTCAAATG+CGG | - | chr1_1:8651051-8651070 | Msa0005840:CDS | 45.0% | |
| AACCGGTAGTGTTCAAATGC+GGG | - | chr1_1:8651052-8651071 | Msa0005840:CDS | 45.0% | |
| ATGCGGGGATGATAATTGGA+AGG | - | chr1_1:8651068-8651087 | Msa0005840:CDS | 45.0% | |
| CCTAAGTAAGCCGACATGTT+AGG | + | chr1_1:8651099-8651118 | None:intergenic | 45.0% | |
| !! | CCTAACATGTCGGCTTACTT+AGG | - | chr1_1:8651096-8651115 | Msa0005840:CDS | 45.0% |
| TTTCAAAGGCCGACCTTATG+TGG | - | chr1_1:8651131-8651150 | Msa0005840:CDS | 45.0% | |
| AAAGGATATGGAGTGGGTGA+AGG | - | chr1_1:8651371-8651390 | Msa0005840:CDS | 45.0% | |
| TGGGTGAAGGTGGCAAATTT+AGG | - | chr1_1:8651384-8651403 | Msa0005840:CDS | 45.0% | |
| GGGTGAAGGTGGCAAATTTA+GGG | - | chr1_1:8651385-8651404 | Msa0005840:CDS | 45.0% | |
| GGTGAAGGTGGCAAATTTAG+GGG | - | chr1_1:8651386-8651405 | Msa0005840:CDS | 45.0% | |
| TCGGATTTGTGTCTTGCCAA+AGG | - | chr1_1:8651456-8651475 | Msa0005840:CDS | 45.0% | |
| CGGATTTGTGTCTTGCCAAA+GGG | - | chr1_1:8651457-8651476 | Msa0005840:CDS | 45.0% | |
| ! | TTCTCAATCCACTTTGGAGG+TGG | + | chr1_1:8651606-8651625 | None:intergenic | 45.0% |
| !! | TCCGATCGATTTGTAGCAAG+TGG | - | chr1_1:8650602-8650621 | Msa0005840:CDS | 45.0% |
| ! | GCCACTTGCTACAAATCGAT+CGG | + | chr1_1:8650606-8650625 | None:intergenic | 45.0% |
| TTTGAGGAGTGGATACTGGA+TGG | + | chr1_1:8650668-8650687 | None:intergenic | 45.0% | |
| GGAATTTGAGGAGTGGATAC+TGG | + | chr1_1:8650672-8650691 | None:intergenic | 45.0% | |
| CAATGTCGAGTGGGAATTTG+AGG | + | chr1_1:8650684-8650703 | None:intergenic | 45.0% | |
| GATGAGGAAGAAGCTGTGTT+TGG | + | chr1_1:8650743-8650762 | None:intergenic | 45.0% | |
| !! | TTTGTGGTGGTGGTTTGATG+AGG | + | chr1_1:8650759-8650778 | None:intergenic | 45.0% |
| CGAATTAGGATTTGTGGTGG+TGG | + | chr1_1:8650769-8650788 | None:intergenic | 45.0% | |
| GAAAAGGTGAGAAATGTCCG+AGG | + | chr1_1:8650855-8650874 | None:intergenic | 45.0% | |
| TCGAAGACAGGAGAAGGAAA+AGG | + | chr1_1:8650871-8650890 | None:intergenic | 45.0% | |
| TTGAAGTCGAAGACAGGAGA+AGG | + | chr1_1:8650877-8650896 | None:intergenic | 45.0% | |
| AACACAGATGACGTGCCATA+TGG | - | chr1_1:8650946-8650965 | Msa0005840:CDS | 45.0% | |
| CCAGGGTTCATGTAACCATA+TGG | + | chr1_1:8650964-8650983 | None:intergenic | 45.0% | |
| CCATATGGTTACATGAACCC+TGG | - | chr1_1:8650961-8650980 | Msa0005840:CDS | 45.0% | |
| ! | TTTGAACACTACCGGTTGTC+CGG | + | chr1_1:8651049-8651068 | None:intergenic | 45.0% |
| CAACCGGTAGTGTTCAAATG+CGG | - | chr1_1:8651051-8651070 | Msa0005840:CDS | 45.0% | |
| AACCGGTAGTGTTCAAATGC+GGG | - | chr1_1:8651052-8651071 | Msa0005840:CDS | 45.0% | |
| ATGCGGGGATGATAATTGGA+AGG | - | chr1_1:8651068-8651087 | Msa0005840:CDS | 45.0% | |
| CCTAAGTAAGCCGACATGTT+AGG | + | chr1_1:8651099-8651118 | None:intergenic | 45.0% | |
| !! | CCTAACATGTCGGCTTACTT+AGG | - | chr1_1:8651096-8651115 | Msa0005840:CDS | 45.0% |
| TTTCAAAGGCCGACCTTATG+TGG | - | chr1_1:8651131-8651150 | Msa0005840:CDS | 45.0% | |
| AAAGGATATGGAGTGGGTGA+AGG | - | chr1_1:8651371-8651390 | Msa0005840:CDS | 45.0% | |
| TGGGTGAAGGTGGCAAATTT+AGG | - | chr1_1:8651384-8651403 | Msa0005840:CDS | 45.0% | |
| GGGTGAAGGTGGCAAATTTA+GGG | - | chr1_1:8651385-8651404 | Msa0005840:CDS | 45.0% | |
| GGTGAAGGTGGCAAATTTAG+GGG | - | chr1_1:8651386-8651405 | Msa0005840:CDS | 45.0% | |
| TCGGATTTGTGTCTTGCCAA+AGG | - | chr1_1:8651456-8651475 | Msa0005840:CDS | 45.0% | |
| CGGATTTGTGTCTTGCCAAA+GGG | - | chr1_1:8651457-8651476 | Msa0005840:CDS | 45.0% | |
| ! | TTCTCAATCCACTTTGGAGG+TGG | + | chr1_1:8651606-8651625 | None:intergenic | 45.0% |
| !! | AGATTGGTCTGAACTGCCGA+AGG | - | chr1_1:8650525-8650544 | Msa0005840:CDS | 50.0% |
| ! | GTTACGGTGGTGATTTGGGA+TGG | + | chr1_1:8650638-8650657 | None:intergenic | 50.0% |
| TCGAGTGGGAATTTGAGGAG+TGG | + | chr1_1:8650679-8650698 | None:intergenic | 50.0% | |
| GGAAGAAGCTGTGTTTGGAG+AGG | + | chr1_1:8650738-8650757 | None:intergenic | 50.0% | |
| GTGAGAAATGTCCGAGGAGT+GGG | + | chr1_1:8650849-8650868 | None:intergenic | 50.0% | |
| CATCTGTGTTGTCGTGACGA+TGG | + | chr1_1:8650936-8650955 | None:intergenic | 50.0% | |
| TGACAGCAACGACTTTGCCA+GGG | + | chr1_1:8650981-8651000 | None:intergenic | 50.0% | |
| ACCGGTAGTGTTCAAATGCG+GGG | - | chr1_1:8651053-8651072 | Msa0005840:CDS | 50.0% | |
| TCCCCGCATTTGAACACTAC+CGG | + | chr1_1:8651057-8651076 | None:intergenic | 50.0% | |
| GTGGCTGAATCTTTGGTTGG+TGG | - | chr1_1:8651210-8651229 | Msa0005840:CDS | 50.0% | |
| !! | GCTGAATCTTTGGTTGGTGG+TGG | - | chr1_1:8651213-8651232 | Msa0005840:CDS | 50.0% |
| !! | AGATTGGTCTGAACTGCCGA+AGG | - | chr1_1:8650525-8650544 | Msa0005840:CDS | 50.0% |
| ! | GTTACGGTGGTGATTTGGGA+TGG | + | chr1_1:8650638-8650657 | None:intergenic | 50.0% |
| TCGAGTGGGAATTTGAGGAG+TGG | + | chr1_1:8650679-8650698 | None:intergenic | 50.0% | |
| GGAAGAAGCTGTGTTTGGAG+AGG | + | chr1_1:8650738-8650757 | None:intergenic | 50.0% | |
| GTGAGAAATGTCCGAGGAGT+GGG | + | chr1_1:8650849-8650868 | None:intergenic | 50.0% | |
| CATCTGTGTTGTCGTGACGA+TGG | + | chr1_1:8650936-8650955 | None:intergenic | 50.0% | |
| TGACAGCAACGACTTTGCCA+GGG | + | chr1_1:8650981-8651000 | None:intergenic | 50.0% | |
| ACCGGTAGTGTTCAAATGCG+GGG | - | chr1_1:8651053-8651072 | Msa0005840:CDS | 50.0% | |
| TCCCCGCATTTGAACACTAC+CGG | + | chr1_1:8651057-8651076 | None:intergenic | 50.0% | |
| GTGGCTGAATCTTTGGTTGG+TGG | - | chr1_1:8651210-8651229 | Msa0005840:CDS | 50.0% | |
| !! | GCTGAATCTTTGGTTGGTGG+TGG | - | chr1_1:8651213-8651232 | Msa0005840:CDS | 50.0% |
| ! | GAGGAGTGGGTGGTAGTGTT+GGG | + | chr1_1:8650836-8650855 | None:intergenic | 55.0% |
| CAACACTACCACCCACTCCT+CGG | - | chr1_1:8650835-8650854 | Msa0005840:CDS | 55.0% | |
| AGAAATGTCCGAGGAGTGGG+TGG | + | chr1_1:8650846-8650865 | None:intergenic | 55.0% | |
| GGTGAGAAATGTCCGAGGAG+TGG | + | chr1_1:8650850-8650869 | None:intergenic | 55.0% | |
| GTGACAGCAACGACTTTGCC+AGG | + | chr1_1:8650982-8651001 | None:intergenic | 55.0% | |
| ! | GTCGTTGCTGTCACTTGCCA+TGG | - | chr1_1:8650988-8651007 | Msa0005840:CDS | 55.0% |
| GGATATGGAGTGGGTGAAGG+TGG | - | chr1_1:8651374-8651393 | Msa0005840:CDS | 55.0% | |
| TGTTCTGGCCACCTCCAAAG+TGG | - | chr1_1:8651595-8651614 | Msa0005840:CDS | 55.0% | |
| ! | GAGGAGTGGGTGGTAGTGTT+GGG | + | chr1_1:8650836-8650855 | None:intergenic | 55.0% |
| CAACACTACCACCCACTCCT+CGG | - | chr1_1:8650835-8650854 | Msa0005840:CDS | 55.0% | |
| AGAAATGTCCGAGGAGTGGG+TGG | + | chr1_1:8650846-8650865 | None:intergenic | 55.0% | |
| GGTGAGAAATGTCCGAGGAG+TGG | + | chr1_1:8650850-8650869 | None:intergenic | 55.0% | |
| GTGACAGCAACGACTTTGCC+AGG | + | chr1_1:8650982-8651001 | None:intergenic | 55.0% | |
| ! | GTCGTTGCTGTCACTTGCCA+TGG | - | chr1_1:8650988-8651007 | Msa0005840:CDS | 55.0% |
| GGATATGGAGTGGGTGAAGG+TGG | - | chr1_1:8651374-8651393 | Msa0005840:CDS | 55.0% | |
| TGTTCTGGCCACCTCCAAAG+TGG | - | chr1_1:8651595-8651614 | Msa0005840:CDS | 55.0% | |
| ! | CGAGGAGTGGGTGGTAGTGT+TGG | + | chr1_1:8650837-8650856 | None:intergenic | 60.0% |
| ! | CGAGGAGTGGGTGGTAGTGT+TGG | + | chr1_1:8650837-8650856 | None:intergenic | 60.0% |
| ! | CGATGGCGGTGGAGGCAGAT+TGG | - | chr1_1:8650509-8650528 | Msa0005840:CDS | 65.0% |
| ! | CGATGGCGGTGGAGGCAGAT+TGG | - | chr1_1:8650509-8650528 | Msa0005840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8650505 | 8651638 | 8650505 | ID=Msa0005840;Name=Msa0005840 |
| chr1_1 | mRNA | 8650505 | 8651638 | 8650505 | ID=Msa0005840-mRNA-1;Parent=Msa0005840;Name=Msa0005840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|377 |
| chr1_1 | exon | 8650505 | 8651638 | 8650505 | ID=Msa0005840-mRNA-1:exon:3060;Parent=Msa0005840-mRNA-1 |
| chr1_1 | CDS | 8650505 | 8651638 | 8650505 | ID=Msa0005840-mRNA-1:cds;Parent=Msa0005840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
