Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360490 | XP_003618745.1 | 67.358 | 386 | 106 | 5 | 1 | 384 | 1 | 368 | 1.36e-159 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360490 | sp|Q3EBZ2|SKI23_ARATH | 29.684 | 411 | 231 | 11 | 4 | 381 | 2 | 387 | 1.37e-39 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360490 | G7KMS3 | 67.358 | 386 | 106 | 5 | 1 | 384 | 1 | 368 | 6.51e-160 | 463 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057010 | Msa1360490 | 0.801361 | 9.335975e-49 | -8.615850e-47 |
| Msa0644270 | Msa1360490 | 0.800216 | 1.599140e-48 | -8.615850e-47 |
| Msa0746230 | Msa1360490 | 0.983579 | 3.961320e-158 | -8.615850e-47 |
| Msa0205440 | Msa1360490 | 0.807524 | 4.847654e-50 | -8.615850e-47 |
| Msa0548320 | Msa1360490 | 0.824746 | 6.830392e-54 | -8.615850e-47 |
| Msa0978670 | Msa1360490 | 0.858305 | 9.024905e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360490 | MtrunA17_Chr6g0457541 | 67.358 | 386 | 106 | 5 | 1 | 384 | 1 | 368 | 1.25e-163 | 463 |
| Msa1360490 | MtrunA17_Chr6g0457531 | 61.598 | 388 | 122 | 8 | 1 | 384 | 1 | 365 | 1.47e-138 | 399 |
| Msa1360490 | MtrunA17_Chr6g0460421 | 59.694 | 392 | 126 | 10 | 1 | 380 | 1 | 372 | 3.32e-135 | 391 |
| Msa1360490 | MtrunA17_Chr6g0460451 | 58.418 | 392 | 131 | 10 | 1 | 380 | 1 | 372 | 1.37e-133 | 387 |
| Msa1360490 | MtrunA17_Chr6g0457501 | 56.468 | 402 | 135 | 10 | 1 | 384 | 1 | 380 | 2.18e-133 | 388 |
| Msa1360490 | MtrunA17_Chr3g0088751 | 50.886 | 395 | 161 | 12 | 1 | 384 | 1 | 373 | 7.59e-115 | 339 |
| Msa1360490 | MtrunA17_Chr2g0303111 | 49.749 | 398 | 150 | 12 | 3 | 384 | 4 | 367 | 3.36e-110 | 327 |
| Msa1360490 | MtrunA17_Chr3g0088551 | 46.192 | 407 | 175 | 12 | 1 | 379 | 1 | 391 | 1.10e-101 | 306 |
| Msa1360490 | MtrunA17_Chr3g0088841 | 47.848 | 395 | 167 | 11 | 2 | 384 | 4 | 371 | 5.40e-100 | 301 |
| Msa1360490 | MtrunA17_Chr1g0146401 | 46.231 | 398 | 173 | 11 | 1 | 384 | 18 | 388 | 2.82e-99 | 300 |
| Msa1360490 | MtrunA17_Chr1g0157711 | 46.970 | 396 | 154 | 13 | 4 | 382 | 5 | 361 | 6.39e-96 | 290 |
| Msa1360490 | MtrunA17_Chr3g0088721 | 44.307 | 404 | 179 | 15 | 1 | 384 | 1 | 378 | 6.14e-93 | 283 |
| Msa1360490 | MtrunA17_Chr3g0088951 | 47.328 | 393 | 161 | 14 | 1 | 384 | 1 | 356 | 1.53e-89 | 274 |
| Msa1360490 | MtrunA17_Chr3g0089001 | 45.974 | 385 | 166 | 11 | 1 | 379 | 31 | 379 | 1.78e-87 | 270 |
| Msa1360490 | MtrunA17_Chr3g0088621 | 43.902 | 410 | 163 | 16 | 2 | 379 | 13 | 387 | 1.13e-86 | 268 |
| Msa1360490 | MtrunA17_Chr3g0088541 | 44.246 | 391 | 180 | 13 | 3 | 384 | 2 | 363 | 1.66e-85 | 264 |
| Msa1360490 | MtrunA17_Chr3g0088931 | 46.974 | 347 | 158 | 10 | 1 | 341 | 1 | 327 | 3.02e-84 | 261 |
| Msa1360490 | MtrunA17_Chr3g0088921 | 42.721 | 419 | 167 | 16 | 2 | 379 | 3 | 389 | 9.63e-84 | 260 |
| Msa1360490 | MtrunA17_Chr3g0088671 | 45.833 | 360 | 154 | 9 | 1 | 347 | 1 | 332 | 1.77e-83 | 258 |
| Msa1360490 | MtrunA17_Chr3g0088741 | 43.797 | 395 | 169 | 11 | 1 | 377 | 1 | 360 | 9.23e-82 | 254 |
| Msa1360490 | MtrunA17_Chr3g0127321 | 43.124 | 429 | 168 | 14 | 1 | 384 | 29 | 426 | 4.50e-81 | 255 |
| Msa1360490 | MtrunA17_Chr3g0088641 | 41.206 | 398 | 174 | 14 | 3 | 384 | 2 | 355 | 2.19e-79 | 248 |
| Msa1360490 | MtrunA17_Chr1g0151721 | 42.462 | 398 | 148 | 12 | 1 | 384 | 17 | 347 | 8.29e-79 | 246 |
| Msa1360490 | MtrunA17_Chr3g0088631 | 42.092 | 392 | 203 | 9 | 1 | 379 | 1 | 381 | 1.25e-78 | 247 |
| Msa1360490 | MtrunA17_Chr3g0089051 | 40.750 | 400 | 186 | 13 | 2 | 378 | 55 | 426 | 4.36e-78 | 247 |
| Msa1360490 | MtrunA17_Chr3g0088601 | 41.960 | 398 | 195 | 12 | 1 | 379 | 13 | 393 | 4.86e-78 | 246 |
| Msa1360490 | MtrunA17_Chr3g0127311 | 42.651 | 415 | 175 | 14 | 1 | 384 | 3 | 385 | 1.85e-76 | 242 |
| Msa1360490 | MtrunA17_Chr3g0088531 | 41.266 | 395 | 194 | 11 | 4 | 384 | 2 | 372 | 6.76e-76 | 239 |
| Msa1360490 | MtrunA17_Chr1g0170781 | 40.385 | 416 | 178 | 12 | 3 | 384 | 17 | 396 | 2.59e-74 | 236 |
| Msa1360490 | MtrunA17_Chr3g0089041 | 39.900 | 401 | 190 | 11 | 4 | 384 | 3 | 372 | 2.91e-73 | 233 |
| Msa1360490 | MtrunA17_Chr7g0214521 | 39.646 | 396 | 181 | 16 | 4 | 384 | 11 | 363 | 4.86e-66 | 214 |
| Msa1360490 | MtrunA17_Chr3g0088991 | 41.406 | 384 | 168 | 14 | 2 | 379 | 3 | 335 | 9.88e-66 | 212 |
| Msa1360490 | MtrunA17_Chr3g0088831 | 35.240 | 437 | 200 | 12 | 2 | 384 | 13 | 420 | 7.89e-63 | 207 |
| Msa1360490 | MtrunA17_Chr3g0096401 | 38.734 | 395 | 162 | 14 | 5 | 384 | 30 | 359 | 1.04e-56 | 189 |
| Msa1360490 | MtrunA17_Chr3g0088661 | 39.348 | 399 | 154 | 16 | 1 | 384 | 1 | 326 | 1.22e-55 | 186 |
| Msa1360490 | MtrunA17_Chr3g0088701 | 39.348 | 399 | 154 | 16 | 1 | 384 | 1 | 326 | 1.44e-54 | 183 |
| Msa1360490 | MtrunA17_Chr5g0417881 | 57.447 | 188 | 58 | 6 | 198 | 374 | 13 | 189 | 8.66e-53 | 174 |
| Msa1360490 | MtrunA17_Chr3g0088561 | 55.191 | 183 | 61 | 4 | 212 | 384 | 1 | 172 | 1.46e-52 | 172 |
| Msa1360490 | MtrunA17_Chr1g0146371 | 49.758 | 207 | 51 | 5 | 182 | 377 | 3 | 167 | 4.88e-51 | 168 |
| Msa1360490 | MtrunA17_Chr1g0151701 | 53.005 | 183 | 71 | 5 | 212 | 384 | 1 | 178 | 2.22e-48 | 162 |
| Msa1360490 | MtrunA17_Chr3g0088581 | 43.779 | 217 | 89 | 7 | 179 | 379 | 2 | 201 | 6.43e-43 | 149 |
| Msa1360490 | MtrunA17_Chr8g0392121 | 46.114 | 193 | 67 | 5 | 209 | 384 | 1 | 173 | 1.00e-39 | 139 |
| Msa1360490 | MtrunA17_Chr3g0088711 | 43.590 | 195 | 89 | 3 | 185 | 377 | 1 | 176 | 2.02e-37 | 133 |
| Msa1360490 | MtrunA17_Chr6g0457511 | 63.559 | 118 | 20 | 3 | 212 | 317 | 1 | 107 | 3.18e-37 | 130 |
| Msa1360490 | MtrunA17_Chr3g0088571 | 50.955 | 157 | 66 | 6 | 1 | 152 | 1 | 151 | 5.97e-37 | 131 |
| Msa1360490 | MtrunA17_Chr3g0092331 | 40.933 | 193 | 79 | 3 | 214 | 384 | 1 | 180 | 6.50e-36 | 130 |
| Msa1360490 | MtrunA17_Chr3g0088681 | 48.734 | 158 | 64 | 2 | 212 | 369 | 1 | 141 | 8.99e-35 | 126 |
| Msa1360490 | MtrunA17_Chr3g0088691 | 42.574 | 202 | 91 | 8 | 1 | 198 | 1 | 181 | 4.08e-32 | 119 |
| Msa1360490 | MtrunA17_Chr3g0088651 | 47.712 | 153 | 69 | 5 | 1 | 151 | 1 | 144 | 2.46e-29 | 112 |
| Msa1360490 | MtrunA17_Chr3g0088591 | 45.455 | 154 | 73 | 4 | 2 | 146 | 18 | 169 | 2.66e-29 | 111 |
| Msa1360490 | MtrunA17_Chr6g0457521 | 68.605 | 86 | 26 | 1 | 4 | 89 | 57 | 141 | 5.62e-29 | 110 |
| Msa1360490 | MtrunA17_Chr8g0349911 | 68.750 | 64 | 20 | 0 | 168 | 231 | 85 | 148 | 1.70e-24 | 99.8 |
| Msa1360490 | MtrunA17_Chr6g0457551 | 89.130 | 46 | 5 | 0 | 1 | 46 | 1 | 46 | 1.27e-21 | 87.0 |
| Msa1360490 | MtrunA17_Chr3g0101901 | 41.892 | 148 | 67 | 5 | 1 | 147 | 22 | 151 | 1.42e-21 | 90.5 |
| Msa1360490 | MtrunA17_Chr2g0300541 | 26.492 | 419 | 216 | 17 | 4 | 382 | 25 | 391 | 2.33e-21 | 94.7 |
| Msa1360490 | MtrunA17_Chr8g0371101 | 26.016 | 369 | 209 | 12 | 4 | 340 | 5 | 341 | 3.07e-18 | 85.5 |
| Msa1360490 | MtrunA17_Chr8g0371031 | 28.460 | 383 | 183 | 19 | 4 | 340 | 24 | 361 | 3.59e-18 | 85.5 |
| Msa1360490 | MtrunA17_Chr4g0010441 | 48.235 | 85 | 43 | 1 | 300 | 384 | 2 | 85 | 2.28e-17 | 77.0 |
| Msa1360490 | MtrunA17_Chr1g0146361 | 54.651 | 86 | 31 | 2 | 301 | 384 | 2 | 81 | 3.44e-16 | 73.2 |
| Msa1360490 | MtrunA17_Chr6g0449121 | 61.644 | 73 | 14 | 3 | 269 | 332 | 2 | 69 | 9.24e-16 | 71.6 |
| Msa1360490 | MtrunA17_Chr1g0146381 | 60.000 | 60 | 23 | 1 | 2 | 60 | 5 | 64 | 1.31e-15 | 71.6 |
| Msa1360490 | MtrunA17_Chr8g0351561 | 41.346 | 104 | 40 | 2 | 221 | 315 | 1 | 92 | 2.30e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360490 | AT2G17030.1 | 29.684 | 411 | 231 | 11 | 4 | 381 | 2 | 387 | 1.39e-40 | 148 |
| Msa1360490 | AT2G17036.1 | 28.979 | 421 | 215 | 18 | 4 | 381 | 2 | 381 | 1.10e-31 | 124 |
| Msa1360490 | AT2G17036.2 | 28.979 | 421 | 215 | 18 | 4 | 381 | 1 | 380 | 1.19e-31 | 124 |
| Msa1360490 | AT5G60060.1 | 30.471 | 361 | 191 | 14 | 6 | 340 | 11 | 337 | 3.95e-27 | 111 |
| Msa1360490 | AT5G24040.1 | 24.433 | 397 | 241 | 10 | 4 | 377 | 2 | 362 | 1.44e-21 | 95.5 |
Find 105 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTACATATTCCCTAAAA+AGG | 0.197211 | tig0017115:+16566 | Msa1360490:CDS |
| CTGAATATTCCAACTTGTTT+TGG | 0.229967 | tig0017115:+17180 | Msa1360490:CDS |
| CAAATTATCTGTCCTCCATT+TGG | 0.288391 | tig0017115:+16485 | Msa1360490:CDS |
| CATAAGGGTGCCCTTTAAAA+AGG | 0.297560 | tig0017115:-16728 | Msa1360490:intergenic |
| CCAAAGGTTCAGCCACTAAA+TGG | 0.299723 | tig0017115:-16800 | Msa1360490:intergenic |
| GGGTGAAGTTAACGAGTTTA+GGG | 0.316381 | tig0017115:+16973 | Msa1360490:CDS |
| CCTTATGCGGTTGATGAAAA+TGG | 0.316777 | tig0017115:+16744 | Msa1360490:CDS |
| CAAAACAAGTTGGAATATTC+AGG | 0.336277 | tig0017115:-17179 | Msa1360490:intergenic |
| TGGGTGAAGTTAACGAGTTT+AGG | 0.340496 | tig0017115:+16972 | Msa1360490:CDS |
| GAGGTTTGCCACGCGTGTTT+TGG | 0.347039 | tig0017115:-16398 | Msa1360490:intergenic |
| GAACCGTGCGAGCTATGTTT+TGG | 0.351429 | tig0017115:+17118 | Msa1360490:CDS |
| CGATGGAGATTTGTTGTTAG+TGG | 0.355342 | tig0017115:+16890 | Msa1360490:CDS |
| CCATTTAGTGGCTGAACCTT+TGG | 0.363928 | tig0017115:+16800 | Msa1360490:CDS |
| AAATTATCTGTCCTCCATTT+GGG | 0.378956 | tig0017115:+16486 | Msa1360490:CDS |
| TAATTTGAAGAGTGGGAACT+TGG | 0.393000 | tig0017115:-16220 | None:intergenic |
| CATCCATGGCGGCGGTTGAC+TGG | 0.409781 | tig0017115:+16064 | None:intergenic |
| CGAAATGTGGCAATGAGAAC+TGG | 0.410594 | tig0017115:+16664 | Msa1360490:CDS |
| ATTAGTGATGATATCTTAAG+AGG | 0.424783 | tig0017115:+17080 | Msa1360490:CDS |
| CCATACACCATTGACATGTT+GGG | 0.425510 | tig0017115:-16696 | Msa1360490:intergenic |
| TGGAGGGTTATTGCTGTTGA+TGG | 0.434908 | tig0017115:-16274 | Msa1360490:intergenic |
| ACGTTTATGTGCATGATGTA+AGG | 0.435533 | tig0017115:+16913 | Msa1360490:CDS |
| AGACTCAAATGTCCATTTAG+TGG | 0.446433 | tig0017115:+16788 | Msa1360490:CDS |
| TATGACCCTCTTTCTTGTAA+AGG | 0.448145 | tig0017115:+16444 | Msa1360490:CDS |
| TCCATACACCATTGACATGT+TGG | 0.451101 | tig0017115:-16697 | Msa1360490:intergenic |
| CATTTCGAAAGTAACGGAAA+TGG | 0.457568 | tig0017115:-16648 | Msa1360490:intergenic |
| AATGATCACACGATTCCCTT+TGG | 0.457670 | tig0017115:-17060 | Msa1360490:intergenic |
| ATTTCGAAAGTAACGGAAAT+GGG | 0.457898 | tig0017115:-16647 | Msa1360490:intergenic |
| CCCAACATGTCAATGGTGTA+TGG | 0.460232 | tig0017115:+16696 | Msa1360490:CDS |
| AGGAATGGTAATTTGAAGAG+TGG | 0.461097 | tig0017115:-16228 | Msa1360490:intergenic |
| TTTGAAGAGTGGGAACTTGG+AGG | 0.462532 | tig0017115:-16217 | Msa1360490:intergenic |
| TTATCAACCGAGGGCAAAGT+AGG | 0.463956 | tig0017115:-16368 | Msa1360490:intergenic |
| TCGGAAGAATAAATTATTAG+TGG | 0.464956 | tig0017115:+16863 | Msa1360490:CDS |
| TCTTGTTGTTGTTGTGGTGG+TGG | 0.467960 | tig0017115:-16336 | Msa1360490:intergenic |
| TTTAAAGCGGCAACAATGAG+AGG | 0.475144 | tig0017115:-16618 | Msa1360490:intergenic |
| CCATGTAGAGGGTGAACCTT+CGG | 0.477848 | tig0017115:+16833 | Msa1360490:CDS |
| TTGAAGAGTGGGAACTTGGA+GGG | 0.478746 | tig0017115:-16216 | Msa1360490:intergenic |
| GTGGCTGAACCTTTGGTTGG+TGG | 0.479791 | tig0017115:+16807 | Msa1360490:CDS |
| TTTGATGCCGCAGTTGCAAA+TGG | 0.486884 | tig0017115:-16520 | Msa1360490:intergenic |
| TGGAAATGATGCTTCCCAAA+TGG | 0.488597 | tig0017115:-16500 | Msa1360490:intergenic |
| AATGGTAAGACAGTTATTGT+TGG | 0.490052 | tig0017115:+16762 | Msa1360490:CDS |
| GTTGGAATATTCAGGAGAAT+CGG | 0.493339 | tig0017115:-17171 | Msa1360490:intergenic |
| ATCATTTCCATTTGCAACTG+CGG | 0.497280 | tig0017115:+16513 | Msa1360490:CDS |
| TGTTCTTCTTGTTGTTGTTG+TGG | 0.497531 | tig0017115:-16342 | Msa1360490:intergenic |
| CAGATTTGTCTGTTGCCAAA+GGG | 0.499116 | tig0017115:+17045 | Msa1360490:CDS |
| CCGAAGGTTCACCCTCTACA+TGG | 0.509419 | tig0017115:-16833 | Msa1360490:intergenic |
| GAGGGTGAACCTTCGGTTGG+TGG | 0.524060 | tig0017115:+16840 | Msa1360490:CDS |
| TCAGATTTGTCTGTTGCCAA+AGG | 0.532428 | tig0017115:+17044 | Msa1360490:CDS |
| TTTGTTCAAGCTTAATGAGA+AGG | 0.533518 | tig0017115:+16941 | Msa1360490:CDS |
| TTAATGAGAAGGAGAAGAAG+TGG | 0.534717 | tig0017115:+16952 | Msa1360490:CDS |
| TTAGTGGCTGAACCTTTGGT+TGG | 0.535767 | tig0017115:+16804 | Msa1360490:CDS |
| TTTCCGTTACTTTCGAAATG+TGG | 0.536550 | tig0017115:+16651 | Msa1360490:CDS |
| AACAAACCCTACTTTGCCCT+CGG | 0.537577 | tig0017115:+16361 | Msa1360490:CDS |
| GTTGTTGCTGCCACGTGCCA+TGG | 0.539751 | tig0017115:+16588 | Msa1360490:CDS |
| GGTGATCCCCAACATGTCAA+TGG | 0.543625 | tig0017115:+16689 | Msa1360490:CDS |
| ACAAGACCTTTACAAGAAAG+AGG | 0.544681 | tig0017115:-16450 | Msa1360490:intergenic |
| GTTGGTGGTGTCCATGTAGA+GGG | 0.549184 | tig0017115:+16822 | Msa1360490:CDS |
| TTGCCACATTTCGAAAGTAA+CGG | 0.550781 | tig0017115:-16654 | Msa1360490:intergenic |
| GGCTAACTCTTATCAACCGA+GGG | 0.560589 | tig0017115:-16377 | Msa1360490:intergenic |
| TAATGAGAAGGAGAAGAAGT+GGG | 0.560700 | tig0017115:+16953 | Msa1360490:CDS |
| CCATGTCGTTGGCGTCAGAA+AGG | 0.562079 | tig0017115:-16248 | Msa1360490:intergenic |
| GGAATGGTAATTTGAAGAGT+GGG | 0.563430 | tig0017115:-16227 | Msa1360490:intergenic |
| ACTCAGATCCGCCTAGGACG+TGG | 0.563518 | tig0017115:-17203 | Msa1360490:intergenic |
| GGTTGGTGGTGTCCATGTAG+AGG | 0.566033 | tig0017115:+16821 | Msa1360490:CDS |
| ATCAGATTGAGAAGCTCCGT+TGG | 0.566429 | tig0017115:-16096 | Msa1360490:intergenic |
| TCTTCTTGTTGTTGTTGTGG+TGG | 0.566830 | tig0017115:-16339 | Msa1360490:intergenic |
| CCTTTCTGACGCCAACGACA+TGG | 0.568942 | tig0017115:+16248 | Msa1360490:CDS |
| GAGGGTCATAATCGAGGAGT+GGG | 0.570481 | tig0017115:-16431 | Msa1360490:intergenic |
| AGGACGTGGCCAAAACAAGT+TGG | 0.576346 | tig0017115:-17189 | Msa1360490:intergenic |
| CGTTTATGTGCATGATGTAA+GGG | 0.586949 | tig0017115:+16914 | Msa1360490:CDS |
| GTTGATGGTATCCATGTCGT+TGG | 0.587062 | tig0017115:-16259 | Msa1360490:intergenic |
| TCCGATCAACTTGTTCAACA+TGG | 0.587534 | tig0017115:+16157 | Msa1360490:CDS |
| TTCTTCCGACCACCAACCGA+AGG | 0.587579 | tig0017115:-16849 | Msa1360490:intergenic |
| GTTGTGGTGGTGGTTTGATG+AGG | 0.588081 | tig0017115:-16326 | Msa1360490:intergenic |
| AGACCAGTCAACCGCCGCCA+TGG | 0.588730 | tig0017115:-16067 | Msa1360490:intergenic |
| TATCAACCGAGGGCAAAGTA+GGG | 0.591775 | tig0017115:-16367 | Msa1360490:intergenic |
| GTGAACCTTCGGTTGGTGGT+CGG | 0.592129 | tig0017115:+16844 | Msa1360490:CDS |
| TGTTTGGAGAGGCGACAGAA+TGG | 0.593981 | tig0017115:-16294 | None:intergenic |
| GCTATAAGCATCCATGGCGG+CGG | 0.594630 | tig0017115:+16056 | None:intergenic |
| TGGAGAGGCGACAGAATGGA+GGG | 0.599874 | tig0017115:-16290 | Msa1360490:intergenic |
| GGTCATAATCGAGGAGTGGG+TGG | 0.600580 | tig0017115:-16428 | Msa1360490:intergenic |
| TTGGAGAGGCGACAGAATGG+AGG | 0.604058 | tig0017115:-16291 | Msa1360490:intergenic |
| AAATTATTAGTGGAGAGCGA+TGG | 0.609711 | tig0017115:+16873 | Msa1360490:CDS |
| GCCATGTTGAACAAGTTGAT+CGG | 0.610376 | tig0017115:-16158 | Msa1360490:intergenic |
| TTAAAGCGGCAACAATGAGA+GGG | 0.618743 | tig0017115:-16617 | Msa1360490:intergenic |
| GTAGAGGGTGAACCTTCGGT+TGG | 0.622007 | tig0017115:+16837 | Msa1360490:CDS |
| CATACACCATTGACATGTTG+GGG | 0.623025 | tig0017115:-16695 | Msa1360490:intergenic |
| AGTCCAAAACATAGCTCGCA+CGG | 0.623098 | tig0017115:-17121 | Msa1360490:intergenic |
| TGACTGGTCTAAACTTCCAA+CGG | 0.624352 | tig0017115:+16080 | Msa1360490:CDS |
| TGGCTAACTCTTATCAACCG+AGG | 0.625280 | tig0017115:-16378 | Msa1360490:intergenic |
| TAACGAACTCAGATCCGCCT+AGG | 0.630137 | tig0017115:-17209 | Msa1360490:intergenic |
| AGAGGGTCATAATCGAGGAG+TGG | 0.634960 | tig0017115:-16432 | Msa1360490:intergenic |
| CAAGACCTTTACAAGAAAGA+GGG | 0.643897 | tig0017115:-16449 | Msa1360490:intergenic |
| AAATGATGCTTCCCAAATGG+AGG | 0.645415 | tig0017115:-16497 | Msa1360490:intergenic |
| AAGAAAGAGGGTCATAATCG+AGG | 0.646139 | tig0017115:-16437 | Msa1360490:intergenic |
| TATTCAGGAGAATCGGACAA+AGG | 0.650496 | tig0017115:-17164 | Msa1360490:intergenic |
| ACATGGACACCACCAACCAA+AGG | 0.653214 | tig0017115:-16816 | Msa1360490:intergenic |
| TAAGAGGATATTGTAGACGT+AGG | 0.667353 | tig0017115:+17096 | Msa1360490:CDS |
| GGTGAAGTTAACGAGTTTAG+GGG | 0.668574 | tig0017115:+16974 | Msa1360490:CDS |
| TCAGGAGAATCGGACAAAGG+CGG | 0.677233 | tig0017115:-17161 | Msa1360490:intergenic |
| AGGAGTGGGTGGAAGAATCG+AGG | 0.679395 | tig0017115:-16417 | Msa1360490:intergenic |
| AGAGTTAGCCAAAACACGCG+TGG | 0.681164 | tig0017115:+16390 | Msa1360490:CDS |
| TCGTTGGCGTCAGAAAGGAA+TGG | 0.697034 | tig0017115:-16243 | Msa1360490:intergenic |
| GAATATGTAGAAACAATCGT+CGG | 0.699359 | tig0017115:-16556 | Msa1360490:intergenic |
| AAATGGGCGAGCATTTAAAG+CGG | 0.718665 | tig0017115:-16631 | Msa1360490:intergenic |
| ATGTGGCAATGAGAACTGGA+AGG | 0.732321 | tig0017115:+16668 | Msa1360490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACATTTGAAGAAGTTTT+AGG | - | tig0017115:16197-16216 | Msa1360490:intergenic | 25.0% |
| ! | TTTCTACATATTCCCTAAAA+AGG | + | tig0017115:16566-16585 | Msa1360490:CDS | 25.0% |
| ! | TCGGAAGAATAAATTATTAG+TGG | + | tig0017115:16863-16882 | Msa1360490:CDS | 25.0% |
| ! | ATTAGTGATGATATCTTAAG+AGG | + | tig0017115:17080-17099 | Msa1360490:CDS | 25.0% |
| !! | GTAACATTTGAAGAAGTTTT+AGG | - | tig0017115:16197-16216 | Msa1360490:intergenic | 25.0% |
| ! | TTTCTACATATTCCCTAAAA+AGG | + | tig0017115:16566-16585 | Msa1360490:CDS | 25.0% |
| ! | TCGGAAGAATAAATTATTAG+TGG | + | tig0017115:16863-16882 | Msa1360490:CDS | 25.0% |
| ! | ATTAGTGATGATATCTTAAG+AGG | + | tig0017115:17080-17099 | Msa1360490:CDS | 25.0% |
| !!! | CATTTGAAGAAGTTTTAGGA+CGG | - | tig0017115:16193-16212 | Msa1360490:intergenic | 30.0% |
| AAATTATCTGTCCTCCATTT+GGG | + | tig0017115:16486-16505 | Msa1360490:CDS | 30.0% | |
| GAATATGTAGAAACAATCGT+CGG | - | tig0017115:16559-16578 | Msa1360490:intergenic | 30.0% | |
| ! | ATTTCGAAAGTAACGGAAAT+GGG | - | tig0017115:16650-16669 | Msa1360490:intergenic | 30.0% |
| ! | GAGACATATGCCTTTTTAAA+GGG | + | tig0017115:16718-16737 | Msa1360490:CDS | 30.0% |
| AATGGTAAGACAGTTATTGT+TGG | + | tig0017115:16762-16781 | Msa1360490:CDS | 30.0% | |
| TTTGTTCAAGCTTAATGAGA+AGG | + | tig0017115:16941-16960 | Msa1360490:CDS | 30.0% | |
| ! | CAAAACAAGTTGGAATATTC+AGG | - | tig0017115:17182-17201 | Msa1360490:intergenic | 30.0% |
| !! | CTGAATATTCCAACTTGTTT+TGG | + | tig0017115:17180-17199 | Msa1360490:CDS | 30.0% |
| !!! | CATTTGAAGAAGTTTTAGGA+CGG | - | tig0017115:16193-16212 | Msa1360490:intergenic | 30.0% |
| AAATTATCTGTCCTCCATTT+GGG | + | tig0017115:16486-16505 | Msa1360490:CDS | 30.0% | |
| GAATATGTAGAAACAATCGT+CGG | - | tig0017115:16559-16578 | Msa1360490:intergenic | 30.0% | |
| ! | ATTTCGAAAGTAACGGAAAT+GGG | - | tig0017115:16650-16669 | Msa1360490:intergenic | 30.0% |
| ! | GAGACATATGCCTTTTTAAA+GGG | + | tig0017115:16718-16737 | Msa1360490:CDS | 30.0% |
| AATGGTAAGACAGTTATTGT+TGG | + | tig0017115:16762-16781 | Msa1360490:CDS | 30.0% | |
| TTTGTTCAAGCTTAATGAGA+AGG | + | tig0017115:16941-16960 | Msa1360490:CDS | 30.0% | |
| ! | CAAAACAAGTTGGAATATTC+AGG | - | tig0017115:17182-17201 | Msa1360490:intergenic | 30.0% |
| !! | CTGAATATTCCAACTTGTTT+TGG | + | tig0017115:17180-17199 | Msa1360490:CDS | 30.0% |
| TAATTTGAAGAGTGGGAACT+TGG | - | tig0017115:16223-16242 | Msa1360490:intergenic | 35.0% | |
| GGAATGGTAATTTGAAGAGT+GGG | - | tig0017115:16230-16249 | Msa1360490:intergenic | 35.0% | |
| AGGAATGGTAATTTGAAGAG+TGG | - | tig0017115:16231-16250 | Msa1360490:intergenic | 35.0% | |
| ! | GATGAGGTAGAGATTTTGTT+TGG | - | tig0017115:16313-16332 | Msa1360490:intergenic | 35.0% |
| !! | TGTTCTTCTTGTTGTTGTTG+TGG | - | tig0017115:16345-16364 | Msa1360490:intergenic | 35.0% |
| TATGACCCTCTTTCTTGTAA+AGG | + | tig0017115:16444-16463 | Msa1360490:CDS | 35.0% | |
| CAAGACCTTTACAAGAAAGA+GGG | - | tig0017115:16452-16471 | Msa1360490:intergenic | 35.0% | |
| ACAAGACCTTTACAAGAAAG+AGG | - | tig0017115:16453-16472 | Msa1360490:intergenic | 35.0% | |
| CAAATTATCTGTCCTCCATT+TGG | + | tig0017115:16485-16504 | Msa1360490:CDS | 35.0% | |
| ATCATTTCCATTTGCAACTG+CGG | + | tig0017115:16513-16532 | Msa1360490:CDS | 35.0% | |
| ! | CATTTCGAAAGTAACGGAAA+TGG | - | tig0017115:16651-16670 | Msa1360490:intergenic | 35.0% |
| ! | TTTCCGTTACTTTCGAAATG+TGG | + | tig0017115:16651-16670 | Msa1360490:CDS | 35.0% |
| TTGCCACATTTCGAAAGTAA+CGG | - | tig0017115:16657-16676 | Msa1360490:intergenic | 35.0% | |
| ! | GGAGACATATGCCTTTTTAA+AGG | + | tig0017115:16717-16736 | Msa1360490:CDS | 35.0% |
| ! | CATTTTCATCAACCGCATAA+GGG | - | tig0017115:16746-16765 | Msa1360490:intergenic | 35.0% |
| AGACTCAAATGTCCATTTAG+TGG | + | tig0017115:16788-16807 | Msa1360490:CDS | 35.0% | |
| AAATTATTAGTGGAGAGCGA+TGG | + | tig0017115:16873-16892 | Msa1360490:CDS | 35.0% | |
| ACGTTTATGTGCATGATGTA+AGG | + | tig0017115:16913-16932 | Msa1360490:CDS | 35.0% | |
| CGTTTATGTGCATGATGTAA+GGG | + | tig0017115:16914-16933 | Msa1360490:CDS | 35.0% | |
| TTAATGAGAAGGAGAAGAAG+TGG | + | tig0017115:16952-16971 | Msa1360490:CDS | 35.0% | |
| TAATGAGAAGGAGAAGAAGT+GGG | + | tig0017115:16953-16972 | Msa1360490:CDS | 35.0% | |
| TAAGAGGATATTGTAGACGT+AGG | + | tig0017115:17096-17115 | Msa1360490:CDS | 35.0% | |
| !! | TATGTTTTGGACTTGGATCA+AGG | + | tig0017115:17131-17150 | Msa1360490:CDS | 35.0% |
| GTTGGAATATTCAGGAGAAT+CGG | - | tig0017115:17174-17193 | Msa1360490:intergenic | 35.0% | |
| TAATTTGAAGAGTGGGAACT+TGG | - | tig0017115:16223-16242 | Msa1360490:intergenic | 35.0% | |
| GGAATGGTAATTTGAAGAGT+GGG | - | tig0017115:16230-16249 | Msa1360490:intergenic | 35.0% | |
| AGGAATGGTAATTTGAAGAG+TGG | - | tig0017115:16231-16250 | Msa1360490:intergenic | 35.0% | |
| ! | GATGAGGTAGAGATTTTGTT+TGG | - | tig0017115:16313-16332 | Msa1360490:intergenic | 35.0% |
| !! | TGTTCTTCTTGTTGTTGTTG+TGG | - | tig0017115:16345-16364 | Msa1360490:intergenic | 35.0% |
| TATGACCCTCTTTCTTGTAA+AGG | + | tig0017115:16444-16463 | Msa1360490:CDS | 35.0% | |
| CAAGACCTTTACAAGAAAGA+GGG | - | tig0017115:16452-16471 | Msa1360490:intergenic | 35.0% | |
| ACAAGACCTTTACAAGAAAG+AGG | - | tig0017115:16453-16472 | Msa1360490:intergenic | 35.0% | |
| CAAATTATCTGTCCTCCATT+TGG | + | tig0017115:16485-16504 | Msa1360490:CDS | 35.0% | |
| ATCATTTCCATTTGCAACTG+CGG | + | tig0017115:16513-16532 | Msa1360490:CDS | 35.0% | |
| ! | CATTTCGAAAGTAACGGAAA+TGG | - | tig0017115:16651-16670 | Msa1360490:intergenic | 35.0% |
| ! | TTTCCGTTACTTTCGAAATG+TGG | + | tig0017115:16651-16670 | Msa1360490:CDS | 35.0% |
| TTGCCACATTTCGAAAGTAA+CGG | - | tig0017115:16657-16676 | Msa1360490:intergenic | 35.0% | |
| ! | GGAGACATATGCCTTTTTAA+AGG | + | tig0017115:16717-16736 | Msa1360490:CDS | 35.0% |
| ! | CATTTTCATCAACCGCATAA+GGG | - | tig0017115:16746-16765 | Msa1360490:intergenic | 35.0% |
| AGACTCAAATGTCCATTTAG+TGG | + | tig0017115:16788-16807 | Msa1360490:CDS | 35.0% | |
| AAATTATTAGTGGAGAGCGA+TGG | + | tig0017115:16873-16892 | Msa1360490:CDS | 35.0% | |
| ACGTTTATGTGCATGATGTA+AGG | + | tig0017115:16913-16932 | Msa1360490:CDS | 35.0% | |
| CGTTTATGTGCATGATGTAA+GGG | + | tig0017115:16914-16933 | Msa1360490:CDS | 35.0% | |
| TTAATGAGAAGGAGAAGAAG+TGG | + | tig0017115:16952-16971 | Msa1360490:CDS | 35.0% | |
| TAATGAGAAGGAGAAGAAGT+GGG | + | tig0017115:16953-16972 | Msa1360490:CDS | 35.0% | |
| TAAGAGGATATTGTAGACGT+AGG | + | tig0017115:17096-17115 | Msa1360490:CDS | 35.0% | |
| !! | TATGTTTTGGACTTGGATCA+AGG | + | tig0017115:17131-17150 | Msa1360490:CDS | 35.0% |
| GTTGGAATATTCAGGAGAAT+CGG | - | tig0017115:17174-17193 | Msa1360490:intergenic | 35.0% | |
| !! | TGACTGGTCTAAACTTCCAA+CGG | + | tig0017115:16080-16099 | Msa1360490:CDS | 40.0% |
| ! | TCCGATCAACTTGTTCAACA+TGG | + | tig0017115:16157-16176 | Msa1360490:CDS | 40.0% |
| !! | GCCATGTTGAACAAGTTGAT+CGG | - | tig0017115:16161-16180 | Msa1360490:intergenic | 40.0% |
| !!! | TTGAAGAAGTTTTAGGACGG+AGG | - | tig0017115:16190-16209 | Msa1360490:intergenic | 40.0% |
| !! | GGTAGAGATTTTGTTTGGAG+AGG | - | tig0017115:16308-16327 | Msa1360490:intergenic | 40.0% |
| !! | TCTTCTTGTTGTTGTTGTGG+TGG | - | tig0017115:16342-16361 | Msa1360490:intergenic | 40.0% |
| AAGAAAGAGGGTCATAATCG+AGG | - | tig0017115:16440-16459 | Msa1360490:intergenic | 40.0% | |
| AAATGATGCTTCCCAAATGG+AGG | - | tig0017115:16500-16519 | Msa1360490:intergenic | 40.0% | |
| TGGAAATGATGCTTCCCAAA+TGG | - | tig0017115:16503-16522 | Msa1360490:intergenic | 40.0% | |
| !!! | CAATCGTCGGCTTCATTTTT+GGG | - | tig0017115:16546-16565 | Msa1360490:intergenic | 40.0% |
| !!! | ACAATCGTCGGCTTCATTTT+TGG | - | tig0017115:16547-16566 | Msa1360490:intergenic | 40.0% |
| ! | TGGCAGCAACAACCTTTTTA+GGG | - | tig0017115:16581-16600 | Msa1360490:intergenic | 40.0% |
| !!! | CAATGAGAGGGTTTTTTCCA+TGG | - | tig0017115:16608-16627 | Msa1360490:intergenic | 40.0% |
| TTAAAGCGGCAACAATGAGA+GGG | - | tig0017115:16620-16639 | Msa1360490:intergenic | 40.0% | |
| ! | TTTAAAGCGGCAACAATGAG+AGG | - | tig0017115:16621-16640 | Msa1360490:intergenic | 40.0% |
| AAATGGGCGAGCATTTAAAG+CGG | - | tig0017115:16634-16653 | Msa1360490:intergenic | 40.0% | |
| CATACACCATTGACATGTTG+GGG | - | tig0017115:16698-16717 | Msa1360490:intergenic | 40.0% | |
| CCATACACCATTGACATGTT+GGG | - | tig0017115:16699-16718 | Msa1360490:intergenic | 40.0% | |
| TCCATACACCATTGACATGT+TGG | - | tig0017115:16700-16719 | Msa1360490:intergenic | 40.0% | |
| !! | CATAAGGGTGCCCTTTAAAA+AGG | - | tig0017115:16731-16750 | Msa1360490:intergenic | 40.0% |
| !!! | TTTTAAAGGGCACCCTTATG+CGG | + | tig0017115:16731-16750 | Msa1360490:CDS | 40.0% |
| ! | CCATTTTCATCAACCGCATA+AGG | - | tig0017115:16747-16766 | Msa1360490:intergenic | 40.0% |
| !! | CCTTATGCGGTTGATGAAAA+TGG | + | tig0017115:16744-16763 | Msa1360490:CDS | 40.0% |
| !! | CGATGGAGATTTGTTGTTAG+TGG | + | tig0017115:16890-16909 | Msa1360490:CDS | 40.0% |
| TGGGTGAAGTTAACGAGTTT+AGG | + | tig0017115:16972-16991 | Msa1360490:CDS | 40.0% | |
| GGGTGAAGTTAACGAGTTTA+GGG | + | tig0017115:16973-16992 | Msa1360490:CDS | 40.0% | |
| GGTGAAGTTAACGAGTTTAG+GGG | + | tig0017115:16974-16993 | Msa1360490:CDS | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | + | tig0017115:16992-17011 | Msa1360490:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | + | tig0017115:16993-17012 | Msa1360490:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | + | tig0017115:16994-17013 | Msa1360490:CDS | 40.0% |
| TCAGATTTGTCTGTTGCCAA+AGG | + | tig0017115:17044-17063 | Msa1360490:CDS | 40.0% | |
| CAGATTTGTCTGTTGCCAAA+GGG | + | tig0017115:17045-17064 | Msa1360490:CDS | 40.0% | |
| AATGATCACACGATTCCCTT+TGG | - | tig0017115:17063-17082 | Msa1360490:intergenic | 40.0% | |
| TATTCAGGAGAATCGGACAA+AGG | - | tig0017115:17167-17186 | Msa1360490:intergenic | 40.0% | |
| !! | TGACTGGTCTAAACTTCCAA+CGG | + | tig0017115:16080-16099 | Msa1360490:CDS | 40.0% |
| ! | TCCGATCAACTTGTTCAACA+TGG | + | tig0017115:16157-16176 | Msa1360490:CDS | 40.0% |
| !! | GCCATGTTGAACAAGTTGAT+CGG | - | tig0017115:16161-16180 | Msa1360490:intergenic | 40.0% |
| !!! | TTGAAGAAGTTTTAGGACGG+AGG | - | tig0017115:16190-16209 | Msa1360490:intergenic | 40.0% |
| !! | GGTAGAGATTTTGTTTGGAG+AGG | - | tig0017115:16308-16327 | Msa1360490:intergenic | 40.0% |
| !! | TCTTCTTGTTGTTGTTGTGG+TGG | - | tig0017115:16342-16361 | Msa1360490:intergenic | 40.0% |
| AAGAAAGAGGGTCATAATCG+AGG | - | tig0017115:16440-16459 | Msa1360490:intergenic | 40.0% | |
| AAATGATGCTTCCCAAATGG+AGG | - | tig0017115:16500-16519 | Msa1360490:intergenic | 40.0% | |
| TGGAAATGATGCTTCCCAAA+TGG | - | tig0017115:16503-16522 | Msa1360490:intergenic | 40.0% | |
| !!! | CAATCGTCGGCTTCATTTTT+GGG | - | tig0017115:16546-16565 | Msa1360490:intergenic | 40.0% |
| !!! | ACAATCGTCGGCTTCATTTT+TGG | - | tig0017115:16547-16566 | Msa1360490:intergenic | 40.0% |
| ! | TGGCAGCAACAACCTTTTTA+GGG | - | tig0017115:16581-16600 | Msa1360490:intergenic | 40.0% |
| !!! | CAATGAGAGGGTTTTTTCCA+TGG | - | tig0017115:16608-16627 | Msa1360490:intergenic | 40.0% |
| TTAAAGCGGCAACAATGAGA+GGG | - | tig0017115:16620-16639 | Msa1360490:intergenic | 40.0% | |
| ! | TTTAAAGCGGCAACAATGAG+AGG | - | tig0017115:16621-16640 | Msa1360490:intergenic | 40.0% |
| AAATGGGCGAGCATTTAAAG+CGG | - | tig0017115:16634-16653 | Msa1360490:intergenic | 40.0% | |
| CATACACCATTGACATGTTG+GGG | - | tig0017115:16698-16717 | Msa1360490:intergenic | 40.0% | |
| CCATACACCATTGACATGTT+GGG | - | tig0017115:16699-16718 | Msa1360490:intergenic | 40.0% | |
| TCCATACACCATTGACATGT+TGG | - | tig0017115:16700-16719 | Msa1360490:intergenic | 40.0% | |
| !! | CATAAGGGTGCCCTTTAAAA+AGG | - | tig0017115:16731-16750 | Msa1360490:intergenic | 40.0% |
| !!! | TTTTAAAGGGCACCCTTATG+CGG | + | tig0017115:16731-16750 | Msa1360490:CDS | 40.0% |
| ! | CCATTTTCATCAACCGCATA+AGG | - | tig0017115:16747-16766 | Msa1360490:intergenic | 40.0% |
| !! | CCTTATGCGGTTGATGAAAA+TGG | + | tig0017115:16744-16763 | Msa1360490:CDS | 40.0% |
| !! | CGATGGAGATTTGTTGTTAG+TGG | + | tig0017115:16890-16909 | Msa1360490:CDS | 40.0% |
| TGGGTGAAGTTAACGAGTTT+AGG | + | tig0017115:16972-16991 | Msa1360490:CDS | 40.0% | |
| GGGTGAAGTTAACGAGTTTA+GGG | + | tig0017115:16973-16992 | Msa1360490:CDS | 40.0% | |
| GGTGAAGTTAACGAGTTTAG+GGG | + | tig0017115:16974-16993 | Msa1360490:CDS | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | + | tig0017115:16992-17011 | Msa1360490:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | + | tig0017115:16993-17012 | Msa1360490:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | + | tig0017115:16994-17013 | Msa1360490:CDS | 40.0% |
| TCAGATTTGTCTGTTGCCAA+AGG | + | tig0017115:17044-17063 | Msa1360490:CDS | 40.0% | |
| CAGATTTGTCTGTTGCCAAA+GGG | + | tig0017115:17045-17064 | Msa1360490:CDS | 40.0% | |
| AATGATCACACGATTCCCTT+TGG | - | tig0017115:17063-17082 | Msa1360490:intergenic | 40.0% | |
| TATTCAGGAGAATCGGACAA+AGG | - | tig0017115:17167-17186 | Msa1360490:intergenic | 40.0% | |
| ATCAGATTGAGAAGCTCCGT+TGG | - | tig0017115:16099-16118 | Msa1360490:intergenic | 45.0% | |
| TTGAAGAGTGGGAACTTGGA+GGG | - | tig0017115:16219-16238 | Msa1360490:intergenic | 45.0% | |
| TTTGAAGAGTGGGAACTTGG+AGG | - | tig0017115:16220-16239 | Msa1360490:intergenic | 45.0% | |
| !! | GTTGATGGTATCCATGTCGT+TGG | - | tig0017115:16262-16281 | Msa1360490:intergenic | 45.0% |
| ! | TGGAGGGTTATTGCTGTTGA+TGG | - | tig0017115:16277-16296 | Msa1360490:intergenic | 45.0% |
| !! | TCTTGTTGTTGTTGTGGTGG+TGG | - | tig0017115:16339-16358 | Msa1360490:intergenic | 45.0% |
| AACAAACCCTACTTTGCCCT+CGG | + | tig0017115:16361-16380 | Msa1360490:CDS | 45.0% | |
| TATCAACCGAGGGCAAAGTA+GGG | - | tig0017115:16370-16389 | Msa1360490:intergenic | 45.0% | |
| TTATCAACCGAGGGCAAAGT+AGG | - | tig0017115:16371-16390 | Msa1360490:intergenic | 45.0% | |
| GGCTAACTCTTATCAACCGA+GGG | - | tig0017115:16380-16399 | Msa1360490:intergenic | 45.0% | |
| TGGCTAACTCTTATCAACCG+AGG | - | tig0017115:16381-16400 | Msa1360490:intergenic | 45.0% | |
| TTTGATGCCGCAGTTGCAAA+TGG | - | tig0017115:16523-16542 | Msa1360490:intergenic | 45.0% | |
| ! | GTGGCAGCAACAACCTTTTT+AGG | - | tig0017115:16582-16601 | Msa1360490:intergenic | 45.0% |
| CGAAATGTGGCAATGAGAAC+TGG | + | tig0017115:16664-16683 | Msa1360490:CDS | 45.0% | |
| ATGTGGCAATGAGAACTGGA+AGG | + | tig0017115:16668-16687 | Msa1360490:CDS | 45.0% | |
| CCCAACATGTCAATGGTGTA+TGG | + | tig0017115:16696-16715 | Msa1360490:CDS | 45.0% | |
| CCAAAGGTTCAGCCACTAAA+TGG | - | tig0017115:16803-16822 | Msa1360490:intergenic | 45.0% | |
| CCATTTAGTGGCTGAACCTT+TGG | + | tig0017115:16800-16819 | Msa1360490:CDS | 45.0% | |
| TTAGTGGCTGAACCTTTGGT+TGG | + | tig0017115:16804-16823 | Msa1360490:CDS | 45.0% | |
| AGTCCAAAACATAGCTCGCA+CGG | - | tig0017115:17124-17143 | Msa1360490:intergenic | 45.0% | |
| !! | TGCGAGCTATGTTTTGGACT+TGG | + | tig0017115:17124-17143 | Msa1360490:CDS | 45.0% |
| ATCAGATTGAGAAGCTCCGT+TGG | - | tig0017115:16099-16118 | Msa1360490:intergenic | 45.0% | |
| TTGAAGAGTGGGAACTTGGA+GGG | - | tig0017115:16219-16238 | Msa1360490:intergenic | 45.0% | |
| TTTGAAGAGTGGGAACTTGG+AGG | - | tig0017115:16220-16239 | Msa1360490:intergenic | 45.0% | |
| !! | GTTGATGGTATCCATGTCGT+TGG | - | tig0017115:16262-16281 | Msa1360490:intergenic | 45.0% |
| ! | TGGAGGGTTATTGCTGTTGA+TGG | - | tig0017115:16277-16296 | Msa1360490:intergenic | 45.0% |
| !! | TCTTGTTGTTGTTGTGGTGG+TGG | - | tig0017115:16339-16358 | Msa1360490:intergenic | 45.0% |
| AACAAACCCTACTTTGCCCT+CGG | + | tig0017115:16361-16380 | Msa1360490:CDS | 45.0% | |
| TATCAACCGAGGGCAAAGTA+GGG | - | tig0017115:16370-16389 | Msa1360490:intergenic | 45.0% | |
| TTATCAACCGAGGGCAAAGT+AGG | - | tig0017115:16371-16390 | Msa1360490:intergenic | 45.0% | |
| GGCTAACTCTTATCAACCGA+GGG | - | tig0017115:16380-16399 | Msa1360490:intergenic | 45.0% | |
| TGGCTAACTCTTATCAACCG+AGG | - | tig0017115:16381-16400 | Msa1360490:intergenic | 45.0% | |
| TTTGATGCCGCAGTTGCAAA+TGG | - | tig0017115:16523-16542 | Msa1360490:intergenic | 45.0% | |
| ! | GTGGCAGCAACAACCTTTTT+AGG | - | tig0017115:16582-16601 | Msa1360490:intergenic | 45.0% |
| CGAAATGTGGCAATGAGAAC+TGG | + | tig0017115:16664-16683 | Msa1360490:CDS | 45.0% | |
| ATGTGGCAATGAGAACTGGA+AGG | + | tig0017115:16668-16687 | Msa1360490:CDS | 45.0% | |
| CCCAACATGTCAATGGTGTA+TGG | + | tig0017115:16696-16715 | Msa1360490:CDS | 45.0% | |
| CCAAAGGTTCAGCCACTAAA+TGG | - | tig0017115:16803-16822 | Msa1360490:intergenic | 45.0% | |
| CCATTTAGTGGCTGAACCTT+TGG | + | tig0017115:16800-16819 | Msa1360490:CDS | 45.0% | |
| TTAGTGGCTGAACCTTTGGT+TGG | + | tig0017115:16804-16823 | Msa1360490:CDS | 45.0% | |
| AGTCCAAAACATAGCTCGCA+CGG | - | tig0017115:17124-17143 | Msa1360490:intergenic | 45.0% | |
| !! | TGCGAGCTATGTTTTGGACT+TGG | + | tig0017115:17124-17143 | Msa1360490:CDS | 45.0% |
| TCGTTGGCGTCAGAAAGGAA+TGG | - | tig0017115:16246-16265 | Msa1360490:intergenic | 50.0% | |
| TGTTTGGAGAGGCGACAGAA+TGG | - | tig0017115:16297-16316 | Msa1360490:intergenic | 50.0% | |
| !! | GTTGTGGTGGTGGTTTGATG+AGG | - | tig0017115:16329-16348 | Msa1360490:intergenic | 50.0% |
| AGAGTTAGCCAAAACACGCG+TGG | + | tig0017115:16390-16409 | Msa1360490:CDS | 50.0% | |
| GAGGGTCATAATCGAGGAGT+GGG | - | tig0017115:16434-16453 | Msa1360490:intergenic | 50.0% | |
| AGAGGGTCATAATCGAGGAG+TGG | - | tig0017115:16435-16454 | Msa1360490:intergenic | 50.0% | |
| !!! | AGGGTTTTTTCCATGGCACG+TGG | - | tig0017115:16601-16620 | Msa1360490:intergenic | 50.0% |
| GGTGATCCCCAACATGTCAA+TGG | + | tig0017115:16689-16708 | Msa1360490:CDS | 50.0% | |
| ACATGGACACCACCAACCAA+AGG | - | tig0017115:16819-16838 | Msa1360490:intergenic | 50.0% | |
| !! | GTTGGTGGTGTCCATGTAGA+GGG | + | tig0017115:16822-16841 | Msa1360490:CDS | 50.0% |
| CCATGTAGAGGGTGAACCTT+CGG | + | tig0017115:16833-16852 | Msa1360490:CDS | 50.0% | |
| ! | GAACCGTGCGAGCTATGTTT+TGG | + | tig0017115:17118-17137 | Msa1360490:CDS | 50.0% |
| TCAGGAGAATCGGACAAAGG+CGG | - | tig0017115:17164-17183 | Msa1360490:intergenic | 50.0% | |
| AGGACGTGGCCAAAACAAGT+TGG | - | tig0017115:17192-17211 | Msa1360490:intergenic | 50.0% | |
| !!! | ACTTGTTTTGGCCACGTCCT+AGG | + | tig0017115:17192-17211 | Msa1360490:CDS | 50.0% |
| TCGTTGGCGTCAGAAAGGAA+TGG | - | tig0017115:16246-16265 | Msa1360490:intergenic | 50.0% | |
| TGTTTGGAGAGGCGACAGAA+TGG | - | tig0017115:16297-16316 | Msa1360490:intergenic | 50.0% | |
| !! | GTTGTGGTGGTGGTTTGATG+AGG | - | tig0017115:16329-16348 | Msa1360490:intergenic | 50.0% |
| AGAGTTAGCCAAAACACGCG+TGG | + | tig0017115:16390-16409 | Msa1360490:CDS | 50.0% | |
| GAGGGTCATAATCGAGGAGT+GGG | - | tig0017115:16434-16453 | Msa1360490:intergenic | 50.0% | |
| AGAGGGTCATAATCGAGGAG+TGG | - | tig0017115:16435-16454 | Msa1360490:intergenic | 50.0% | |
| !!! | AGGGTTTTTTCCATGGCACG+TGG | - | tig0017115:16601-16620 | Msa1360490:intergenic | 50.0% |
| GGTGATCCCCAACATGTCAA+TGG | + | tig0017115:16689-16708 | Msa1360490:CDS | 50.0% | |
| ACATGGACACCACCAACCAA+AGG | - | tig0017115:16819-16838 | Msa1360490:intergenic | 50.0% | |
| !! | GTTGGTGGTGTCCATGTAGA+GGG | + | tig0017115:16822-16841 | Msa1360490:CDS | 50.0% |
| CCATGTAGAGGGTGAACCTT+CGG | + | tig0017115:16833-16852 | Msa1360490:CDS | 50.0% | |
| ! | GAACCGTGCGAGCTATGTTT+TGG | + | tig0017115:17118-17137 | Msa1360490:CDS | 50.0% |
| TCAGGAGAATCGGACAAAGG+CGG | - | tig0017115:17164-17183 | Msa1360490:intergenic | 50.0% | |
| AGGACGTGGCCAAAACAAGT+TGG | - | tig0017115:17192-17211 | Msa1360490:intergenic | 50.0% | |
| !!! | ACTTGTTTTGGCCACGTCCT+AGG | + | tig0017115:17192-17211 | Msa1360490:CDS | 50.0% |
| CCATGTCGTTGGCGTCAGAA+AGG | - | tig0017115:16251-16270 | Msa1360490:intergenic | 55.0% | |
| CCTTTCTGACGCCAACGACA+TGG | + | tig0017115:16248-16267 | Msa1360490:CDS | 55.0% | |
| TGGAGAGGCGACAGAATGGA+GGG | - | tig0017115:16293-16312 | Msa1360490:intergenic | 55.0% | |
| TTGGAGAGGCGACAGAATGG+AGG | - | tig0017115:16294-16313 | Msa1360490:intergenic | 55.0% | |
| ! | GAGGTTTGCCACGCGTGTTT+TGG | - | tig0017115:16401-16420 | Msa1360490:intergenic | 55.0% |
| AGGAGTGGGTGGAAGAATCG+AGG | - | tig0017115:16420-16439 | Msa1360490:intergenic | 55.0% | |
| GGTCATAATCGAGGAGTGGG+TGG | - | tig0017115:16431-16450 | Msa1360490:intergenic | 55.0% | |
| GTGGCTGAACCTTTGGTTGG+TGG | + | tig0017115:16807-16826 | Msa1360490:CDS | 55.0% | |
| !! | GGTTGGTGGTGTCCATGTAG+AGG | + | tig0017115:16821-16840 | Msa1360490:CDS | 55.0% |
| CCGAAGGTTCACCCTCTACA+TGG | - | tig0017115:16836-16855 | Msa1360490:intergenic | 55.0% | |
| GTAGAGGGTGAACCTTCGGT+TGG | + | tig0017115:16837-16856 | Msa1360490:CDS | 55.0% | |
| !! | GTGAACCTTCGGTTGGTGGT+CGG | + | tig0017115:16844-16863 | Msa1360490:CDS | 55.0% |
| TTCTTCCGACCACCAACCGA+AGG | - | tig0017115:16852-16871 | Msa1360490:intergenic | 55.0% | |
| !!! | TGTTTTGGCCACGTCCTAGG+CGG | + | tig0017115:17195-17214 | Msa1360490:CDS | 55.0% |
| CCATGTCGTTGGCGTCAGAA+AGG | - | tig0017115:16251-16270 | Msa1360490:intergenic | 55.0% | |
| CCTTTCTGACGCCAACGACA+TGG | + | tig0017115:16248-16267 | Msa1360490:CDS | 55.0% | |
| TGGAGAGGCGACAGAATGGA+GGG | - | tig0017115:16293-16312 | Msa1360490:intergenic | 55.0% | |
| TTGGAGAGGCGACAGAATGG+AGG | - | tig0017115:16294-16313 | Msa1360490:intergenic | 55.0% | |
| ! | GAGGTTTGCCACGCGTGTTT+TGG | - | tig0017115:16401-16420 | Msa1360490:intergenic | 55.0% |
| AGGAGTGGGTGGAAGAATCG+AGG | - | tig0017115:16420-16439 | Msa1360490:intergenic | 55.0% | |
| GGTCATAATCGAGGAGTGGG+TGG | - | tig0017115:16431-16450 | Msa1360490:intergenic | 55.0% | |
| GTGGCTGAACCTTTGGTTGG+TGG | + | tig0017115:16807-16826 | Msa1360490:CDS | 55.0% | |
| !! | GGTTGGTGGTGTCCATGTAG+AGG | + | tig0017115:16821-16840 | Msa1360490:CDS | 55.0% |
| CCGAAGGTTCACCCTCTACA+TGG | - | tig0017115:16836-16855 | Msa1360490:intergenic | 55.0% | |
| GTAGAGGGTGAACCTTCGGT+TGG | + | tig0017115:16837-16856 | Msa1360490:CDS | 55.0% | |
| !! | GTGAACCTTCGGTTGGTGGT+CGG | + | tig0017115:16844-16863 | Msa1360490:CDS | 55.0% |
| TTCTTCCGACCACCAACCGA+AGG | - | tig0017115:16852-16871 | Msa1360490:intergenic | 55.0% | |
| !!! | TGTTTTGGCCACGTCCTAGG+CGG | + | tig0017115:17195-17214 | Msa1360490:CDS | 55.0% |
| GTTGTTGCTGCCACGTGCCA+TGG | + | tig0017115:16588-16607 | Msa1360490:CDS | 60.0% | |
| GAGGGTGAACCTTCGGTTGG+TGG | + | tig0017115:16840-16859 | Msa1360490:CDS | 60.0% | |
| GTTGTTGCTGCCACGTGCCA+TGG | + | tig0017115:16588-16607 | Msa1360490:CDS | 60.0% | |
| GAGGGTGAACCTTCGGTTGG+TGG | + | tig0017115:16840-16859 | Msa1360490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017115 | gene | 16069 | 17223 | 16069 | ID=Msa1360490;Name=Msa1360490 |
| tig0017115 | mRNA | 16069 | 17223 | 16069 | ID=Msa1360490-mRNA-1;Parent=Msa1360490;Name=Msa1360490-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|384 |
| tig0017115 | exon | 16069 | 17223 | 16069 | ID=Msa1360490-mRNA-1:exon:11980;Parent=Msa1360490-mRNA-1 |
| tig0017115 | CDS | 16069 | 17223 | 16069 | ID=Msa1360490-mRNA-1:cds;Parent=Msa1360490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
